Query 537021.9.peg.1058_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 05:10:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1058.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2a7u_A ATP synthase alpha cha 12.9 97 0.0029 15.3 1.5 15 22-36 3-17 (26) 2 >1lm5_A Subdomain of desmoplak 12.3 66 0.0019 16.1 0.5 18 18-35 16-33 (87) 3 >2iuk_A SEED lipoxygenase; iro 12.0 35 0.001 17.3 -1.0 29 7-35 2-30 (31) 4 >1gff_3 Bacteriophage G4 capsi 8.4 95 0.0028 15.3 0.1 13 13-25 2-14 (26) 5 >2v7y_A Chaperone protein DNAK 7.1 1.1E+02 0.0033 15.0 -0.0 27 4-30 39-65 (73) 6 >1f8n_A Lipoxygenase-1; dioxyg 6.9 74 0.0022 15.8 -1.0 28 8-35 2-29 (30) 7 >1cks_A Cyclin-dependent kinas 4.7 3.1E+02 0.0091 13.0 1.1 11 8-18 21-31 (31) 8 >3drw_A ADP-specific phosphofr 4.7 2.7E+02 0.008 13.2 0.8 13 1-13 102-114 (132) 9 >2jc9_A Cytosolic purine 5'-nu 4.6 1.7E+02 0.0052 14.1 -0.2 18 18-36 21-38 (72) 10 >1z5h_A Tricorn protease inter 4.6 3.3E+02 0.0099 12.8 1.2 17 19-35 74-90 (109) No 1 >>2a7u_A ATP synthase alpha chain; alpha helix bundle, hydrolase; NMR {Synthetic} (A:) Probab=12.91 E-value=97 Score=15.29 Aligned_cols=15 Identities=53% Similarity=0.612 Sum_probs=11.5 Q ss_pred CCCCCHHHHHHHHHC Q ss_conf 367006676786533 Q 537021.9.peg.1 22 LSKPSISEGIKKRIR 36 (37) Q Consensus 22 lskpsisegikkrir 36 (37) |....|||-||.||. T Consensus 3 lnsteiselikqria 17 (26) T 2a7u_A 3 LNSTEISELIKQRIA 17 (26) T ss_dssp SSGGGGHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 763889999999988 No 2 >>1lm5_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat,, structural protein; 1.80A {Homo sapiens} (A:1-34,A:162-214) Probab=12.29 E-value=66 Score=16.07 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=13.6 Q ss_pred HHHCCCCCCHHHHHHHHH Q ss_conf 331036700667678653 Q 537021.9.peg.1 18 RSASLSKPSISEGIKKRI 35 (37) Q Consensus 18 rsaslskpsisegikkri 35 (37) ....|.|-||+|||...| T Consensus 16 DTEnLEKIsItEGi~RGI 33 (87) T 1lm5_A 16 DTENLEKISITEGIERGI 33 (87) T ss_dssp ETTTTEEECHHHHHHTTS T ss_pred ECCCCCEEEHHHHHHCCC T ss_conf 889997875999998699 No 3 >>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} (A:602-632) Probab=12.01 E-value=35 Score=17.34 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.4 Q ss_pred CCEECHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 71231399985331036700667678653 Q 537021.9.peg.1 7 DEVIIPKKLIRRSASLSKPSISEGIKKRI 35 (37) Q Consensus 7 deviipkklirrsaslskpsisegikkri 35 (37) |+--.|..||+|.-....|+-..|++-.| T Consensus 2 ~~qaLP~DLikRG~Av~Dp~~phglrLlI 30 (31) T 2iuk_A 2 THQALPADLVKRGLAIEDPSAPHGLRLVI 30 (31) T ss_dssp GGSSHHHHHHHTTSEEECSSSTTSEEESS T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 34668899997589765555643322457 No 4 >>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4} (3:) Probab=8.37 E-value=95 Score=15.32 Aligned_cols=13 Identities=62% Similarity=0.578 Sum_probs=10.2 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9998533103670 Q 537021.9.peg.1 13 KKLIRRSASLSKP 25 (37) Q Consensus 13 kklirrsaslskp 25 (37) ||-||||..-||- T Consensus 2 kksirrsggkskg 14 (26) T 1gff_3 2 KKSIRRSGGKSKG 14 (26) T ss_pred CCHHHHCCCCCCC T ss_conf 4113222787786 No 5 >>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:157-197,A:283-314) Probab=7.12 E-value=1.1e+02 Score=15.03 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.6 Q ss_pred CCCCCEECHHHHHHHHHCCCCCCHHHH Q ss_conf 025712313999853310367006676 Q 537021.9.peg.1 4 TLGDEVIIPKKLIRRSASLSKPSISEG 30 (37) Q Consensus 4 tlgdeviipkklirrsaslskpsiseg 30 (37) .||+..+-|-+-.-+.|.+++-.|.|= T Consensus 39 ~LG~r~~~pv~~~L~da~l~~~dIdeV 65 (73) T 2v7y_A 39 HLGERTMGPVRQALQDAGLTPADIDKV 65 (73) T ss_dssp TCSHTTHHHHHHHHHHHTCCGGGCSEE T ss_pred CCCHHHHHHHHHHHHHCCCCHHHCCEE T ss_conf 758999999999999849998999589 No 6 >>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} (A:577-606) Probab=6.88 E-value=74 Score=15.82 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=21.1 Q ss_pred CEECHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 1231399985331036700667678653 Q 537021.9.peg.1 8 EVIIPKKLIRRSASLSKPSISEGIKKRI 35 (37) Q Consensus 8 eviipkklirrsaslskpsisegikkri 35 (37) |--.|..||+|.-....|+-..|++-.| T Consensus 2 eqaLP~DLikRG~Av~Dp~~phGlrLlI 29 (30) T 1f8n_A 2 DQALPADLIKRGVAIKDPSTPHGVRLLI 29 (30) T ss_dssp GGSHHHHHHHTTSEEECTTSTTSEEESS T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 5778899997599876556655543457 No 7 >>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} (A:1-31) Probab=4.70 E-value=3.1e+02 Score=12.96 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=8.2 Q ss_pred CEECHHHHHHH Q ss_conf 12313999853 Q 537021.9.peg.1 8 EVIIPKKLIRR 18 (37) Q Consensus 8 eviipkklirr 18 (37) .||+||.+.++ T Consensus 21 HViLPk~~aKk 31 (31) T 1cks_A 21 HVMLPRELSKQ 31 (31) T ss_dssp CEECCHHHHHT T ss_pred EEEECHHHHHH T ss_conf 99968899965 No 8 >>3drw_A ADP-specific phosphofructokinase; AMP, cytoplasm, glycolysis, magnesium, metal-binding, transferase, structural genomics, PSI-2; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A (A:35-119,A:175-221) Probab=4.66 E-value=2.7e+02 Score=13.22 Aligned_cols=13 Identities=54% Similarity=0.751 Sum_probs=8.9 Q ss_pred CCCCCCCCEECHH Q ss_conf 9410257123139 Q 537021.9.peg.1 1 LEFTLGDEVIIPK 13 (37) Q Consensus 1 leftlgdeviipk 13 (37) ++|.||||.|+.+ T Consensus 102 ~~f~l~~~~i~~~ 114 (132) T 3drw_A 102 LKFKLGDETIEIP 114 (132) T ss_dssp CEEESSSCEEECC T ss_pred CEEECCCCEEECC T ss_conf 8764478338668 No 9 >>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2jcm_A* (A:406-477) Probab=4.57 E-value=1.7e+02 Score=14.10 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=11.2 Q ss_pred HHHCCCCCCHHHHHHHHHC Q ss_conf 3310367006676786533 Q 537021.9.peg.1 18 RSASLSKPSISEGIKKRIR 36 (37) Q Consensus 18 rsaslskpsisegikkrir 36 (37) -|+|-.+|.|+. |+++|| T Consensus 21 DssS~e~PDIs~-i~~~Ir 38 (72) T 2jc9_A 21 DSSSNERPDISS-IQRRIK 38 (72) T ss_dssp --------------CHHHH T ss_pred HHHHCCCHHHHH-HHHHHH T ss_conf 765313567799-999999 No 10 >>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A (A:503-537,A:707-780) Probab=4.55 E-value=3.3e+02 Score=12.78 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.3 Q ss_pred HHCCCCCCHHHHHHHHH Q ss_conf 31036700667678653 Q 537021.9.peg.1 19 SASLSKPSISEGIKKRI 35 (37) Q Consensus 19 saslskpsisegikkri 35 (37) -++...|+++-||+|-+ T Consensus 74 ~~~I~sk~~n~Gi~KGl 90 (109) T 1z5h_A 74 VRNIGSKNISMGLAKGI 90 (109) T ss_dssp HHTTCCTTSHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHH T ss_conf 84488853678999999 Done!