Query         537021.9.peg.1058_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed May 25 05:06:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1058.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2ev0a1 a.4.5.24 (A:2-62) Mang   8.4      58  0.0042   14.5   1.1   22   13-34     24-45  (61)
  2 d2isya1 a.4.5.24 (A:2-64) Iron   4.9 1.2E+02  0.0085   13.1   1.1   23   12-34     25-47  (63)
  3 d1pm3a_ b.41.1.2 (A:) MTH1895    4.6      77  0.0056   13.9  -0.0   14   19-32     38-51  (78)
  4 d1v54i_ f.23.3.1 (I:) Mitochon   2.4 1.9E+02   0.014   12.1   0.1   17   19-35      1-17  (73)
  5 d2duca1 b.47.1.4 (A:2-301) Cor   2.3 1.6E+02   0.011   12.5  -0.3   23    4-26     30-52  (300)
  6 d1y9ba1 a.43.1.9 (A:3-83) Hypo   2.2 2.7E+02   0.019   11.4   1.3   21   12-32     14-35  (81)
  7 d1o57a1 a.4.5.40 (A:2-74) N-te   2.0 2.4E+02   0.018   11.6   0.3   13   20-32     32-44  (73)
  8 d1nppa2 b.34.5.4 (A:191-248) N   1.8 3.1E+02   0.022   11.1   0.9   11    1-11      3-13  (58)
  9 d2hepa1 a.2.21.1 (A:1-42) Hypo   1.8 1.6E+02   0.012   12.4  -0.9   22   11-32      2-23  (42)
 10 d2oz4a1 b.1.1.3 (A:283-366) In   1.8   2E+02   0.015   12.0  -0.5    9   22-30      8-16  (84)

No 1  
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=8.40  E-value=58  Score=14.49  Aligned_cols=22  Identities=14%  Similarity=0.164  Sum_probs=17.3

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             9998533103670066767865
Q 537021.9.peg.1   13 KKLIRRSASLSKPSISEGIKKR   34 (37)
Q Consensus        13 kklirrsaslskpsisegikkr   34 (37)
                      -+-|-+.-..|+||.|+-+|+-
T Consensus        24 ~~~iA~~L~vs~~SVs~mikrL   45 (61)
T d2ev0a1          24 VSDIAEALAVHPSSVTKMVQKL   45 (61)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999589951599999999


No 2  
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.91  E-value=1.2e+02  Score=13.10  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=17.4

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             39998533103670066767865
Q 537021.9.peg.1   12 PKKLIRRSASLSKPSISEGIKKR   34 (37)
Q Consensus        12 pkklirrsaslskpsisegikkr   34 (37)
                      .-.-|-+.-..|+||.++.+|+-
T Consensus        25 ~~~~iA~~L~vs~~SVt~mvkrL   47 (63)
T d2isya1          25 LRARIAERLDQSGPTVSQTVSRM   47 (63)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             09999999689944399999999


No 3  
>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.65  E-value=77  Score=13.93  Aligned_cols=14  Identities=50%  Similarity=0.584  Sum_probs=10.2

Q ss_pred             HHCCCCCCHHHHHH
Q ss_conf             31036700667678
Q 537021.9.peg.1   19 SASLSKPSISEGIK   32 (37)
Q Consensus        19 saslskpsisegik   32 (37)
                      |--++||.||++|+
T Consensus        38 sLiI~k~Gis~~ig   51 (78)
T d1pm3a_          38 SLVLGKGGISEGLG   51 (78)
T ss_dssp             EEEEECCC------
T ss_pred             EEEECCCCCCHHHC
T ss_conf             99973764110100


No 4  
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.35  E-value=1.9e+02  Score=12.13  Aligned_cols=17  Identities=29%  Similarity=0.583  Sum_probs=7.7

Q ss_pred             HHCCCCCCHHHHHHHHH
Q ss_conf             31036700667678653
Q 537021.9.peg.1   19 SASLSKPSISEGIKKRI   35 (37)
Q Consensus        19 saslskpsisegikkri   35 (37)
                      |+||.||..-.-..+|+
T Consensus         1 s~~l~KPqmrGLl~~~l   17 (73)
T d1v54i_           1 STALAKPQMRGLLARRL   17 (73)
T ss_dssp             CCCCCCCCCBSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             98766217767999999


No 5  
>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]}
Probab=2.28  E-value=1.6e+02  Score=12.48  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=16.6

Q ss_pred             CCCCCEECHHHHHHHHHCCCCCC
Q ss_conf             02571231399985331036700
Q 537021.9.peg.1    4 TLGDEVIIPKKLIRRSASLSKPS   26 (37)
Q Consensus         4 tlgdeviipkklirrsaslskps   26 (37)
                      -|||.|+-|...|-.+..++.|.
T Consensus        30 WL~d~VyCPRHVi~s~~~~~~~~   52 (300)
T d2duca1          30 WLDDTVYCPRHVICTAEDMLNPN   52 (300)
T ss_dssp             EETTEEEEEGGGGCCSSCCSSCC
T ss_pred             EECCEEECCCEEEECCCCCCCCC
T ss_conf             75899974652785277667877


No 6  
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}
Probab=2.18  E-value=2.7e+02  Score=11.42  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=15.7

Q ss_pred             HHHHHHHHHCCCC-CCHHHHHH
Q ss_conf             3999853310367-00667678
Q 537021.9.peg.1   12 PKKLIRRSASLSK-PSISEGIK   32 (37)
Q Consensus        12 pkklirrsaslsk-psisegik   32 (37)
                      -|.+|+|.|.++. -+.|+=+-
T Consensus        14 ~k~li~rAA~l~G~~tls~Fv~   35 (81)
T d1y9ba1          14 TQDLLAKAAALAGMSSINSFVL   35 (81)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999999998709982899999


No 7  
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=2.00  E-value=2.4e+02  Score=11.62  Aligned_cols=13  Identities=38%  Similarity=0.401  Sum_probs=8.8

Q ss_pred             HCCCCCCHHHHHH
Q ss_conf             1036700667678
Q 537021.9.peg.1   20 ASLSKPSISEGIK   32 (37)
Q Consensus        20 aslskpsisegik   32 (37)
                      -.-.|-||||.+-
T Consensus        32 ~~~AKSsISEDl~   44 (73)
T d1o57a1          32 YESAKSSISEDLT   44 (73)
T ss_dssp             TTCCHHHHHHHHH
T ss_pred             HCHHHCHHHHHHH
T ss_conf             6521020265799


No 8  
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=1.81  E-value=3.1e+02  Score=11.12  Aligned_cols=11  Identities=45%  Similarity=0.827  Sum_probs=7.7

Q ss_pred             CCCCCCCCEEC
Q ss_conf             94102571231
Q 537021.9.peg.1    1 LEFTLGDEVII   11 (37)
Q Consensus         1 leftlgdevii   11 (37)
                      .+|..||.|-|
T Consensus         3 vdf~~Gd~V~I   13 (58)
T d1nppa2           3 VEFEKGDQVRV   13 (58)
T ss_dssp             CSCCTTCEEEE
T ss_pred             CCCCCCCEEEE
T ss_conf             55259999999


No 9  
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=1.80  E-value=1.6e+02  Score=12.43  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             1399985331036700667678
Q 537021.9.peg.1   11 IPKKLIRRSASLSKPSISEGIK   32 (37)
Q Consensus        11 ipkklirrsaslskpsisegik   32 (37)
                      +.++.|.|-.-|++-+-++|+.
T Consensus         2 m~~~~i~RINeLakK~K~~gLT   23 (42)
T d2hepa1           2 ISNAKIARINELAAKAKAGVIT   23 (42)
T ss_dssp             CCSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCC
T ss_conf             8889999999999874035999


No 10 
>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.76  E-value=2e+02  Score=11.98  Aligned_cols=9  Identities=67%  Similarity=1.184  Sum_probs=0.0

Q ss_pred             CCCCCHHHH
Q ss_conf             367006676
Q 537021.9.peg.1   22 LSKPSISEG   30 (37)
Q Consensus        22 lskpsiseg   30 (37)
                      ||.|+.|||
T Consensus         8 lsep~v~eG   16 (84)
T d2oz4a1           8 LTKPEVSEG   16 (84)
T ss_dssp             ESCSEEETT
T ss_pred             ECCCCCCCC
T ss_conf             536757889


Done!