Query 537021.9.peg.1058_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 05:06:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1058.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2ev0a1 a.4.5.24 (A:2-62) Mang 8.4 58 0.0042 14.5 1.1 22 13-34 24-45 (61) 2 d2isya1 a.4.5.24 (A:2-64) Iron 4.9 1.2E+02 0.0085 13.1 1.1 23 12-34 25-47 (63) 3 d1pm3a_ b.41.1.2 (A:) MTH1895 4.6 77 0.0056 13.9 -0.0 14 19-32 38-51 (78) 4 d1v54i_ f.23.3.1 (I:) Mitochon 2.4 1.9E+02 0.014 12.1 0.1 17 19-35 1-17 (73) 5 d2duca1 b.47.1.4 (A:2-301) Cor 2.3 1.6E+02 0.011 12.5 -0.3 23 4-26 30-52 (300) 6 d1y9ba1 a.43.1.9 (A:3-83) Hypo 2.2 2.7E+02 0.019 11.4 1.3 21 12-32 14-35 (81) 7 d1o57a1 a.4.5.40 (A:2-74) N-te 2.0 2.4E+02 0.018 11.6 0.3 13 20-32 32-44 (73) 8 d1nppa2 b.34.5.4 (A:191-248) N 1.8 3.1E+02 0.022 11.1 0.9 11 1-11 3-13 (58) 9 d2hepa1 a.2.21.1 (A:1-42) Hypo 1.8 1.6E+02 0.012 12.4 -0.9 22 11-32 2-23 (42) 10 d2oz4a1 b.1.1.3 (A:283-366) In 1.8 2E+02 0.015 12.0 -0.5 9 22-30 8-16 (84) No 1 >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=8.40 E-value=58 Score=14.49 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=17.3 Q ss_pred HHHHHHHHCCCCCCHHHHHHHH Q ss_conf 9998533103670066767865 Q 537021.9.peg.1 13 KKLIRRSASLSKPSISEGIKKR 34 (37) Q Consensus 13 kklirrsaslskpsisegikkr 34 (37) -+-|-+.-..|+||.|+-+|+- T Consensus 24 ~~~iA~~L~vs~~SVs~mikrL 45 (61) T d2ev0a1 24 VSDIAEALAVHPSSVTKMVQKL 45 (61) T ss_dssp HHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999589951599999999 No 2 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=4.91 E-value=1.2e+02 Score=13.10 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=17.4 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 39998533103670066767865 Q 537021.9.peg.1 12 PKKLIRRSASLSKPSISEGIKKR 34 (37) Q Consensus 12 pkklirrsaslskpsisegikkr 34 (37) .-.-|-+.-..|+||.++.+|+- T Consensus 25 ~~~~iA~~L~vs~~SVt~mvkrL 47 (63) T d2isya1 25 LRARIAERLDQSGPTVSQTVSRM 47 (63) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHCCCCHHHHHHHHHH T ss_conf 09999999689944399999999 No 3 >d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=4.65 E-value=77 Score=13.93 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=10.2 Q ss_pred HHCCCCCCHHHHHH Q ss_conf 31036700667678 Q 537021.9.peg.1 19 SASLSKPSISEGIK 32 (37) Q Consensus 19 saslskpsisegik 32 (37) |--++||.||++|+ T Consensus 38 sLiI~k~Gis~~ig 51 (78) T d1pm3a_ 38 SLVLGKGGISEGLG 51 (78) T ss_dssp EEEEECCC------ T ss_pred EEEECCCCCCHHHC T ss_conf 99973764110100 No 4 >d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]} Probab=2.35 E-value=1.9e+02 Score=12.13 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=7.7 Q ss_pred HHCCCCCCHHHHHHHHH Q ss_conf 31036700667678653 Q 537021.9.peg.1 19 SASLSKPSISEGIKKRI 35 (37) Q Consensus 19 saslskpsisegikkri 35 (37) |+||.||..-.-..+|+ T Consensus 1 s~~l~KPqmrGLl~~~l 17 (73) T d1v54i_ 1 STALAKPQMRGLLARRL 17 (73) T ss_dssp CCCCCCCCCBSHHHHHH T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 98766217767999999 No 5 >d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]} Probab=2.28 E-value=1.6e+02 Score=12.48 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=16.6 Q ss_pred CCCCCEECHHHHHHHHHCCCCCC Q ss_conf 02571231399985331036700 Q 537021.9.peg.1 4 TLGDEVIIPKKLIRRSASLSKPS 26 (37) Q Consensus 4 tlgdeviipkklirrsaslskps 26 (37) -|||.|+-|...|-.+..++.|. T Consensus 30 WL~d~VyCPRHVi~s~~~~~~~~ 52 (300) T d2duca1 30 WLDDTVYCPRHVICTAEDMLNPN 52 (300) T ss_dssp EETTEEEEEGGGGCCSSCCSSCC T ss_pred EECCEEECCCEEEECCCCCCCCC T ss_conf 75899974652785277667877 No 6 >d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]} Probab=2.18 E-value=2.7e+02 Score=11.42 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.7 Q ss_pred HHHHHHHHHCCCC-CCHHHHHH Q ss_conf 3999853310367-00667678 Q 537021.9.peg.1 12 PKKLIRRSASLSK-PSISEGIK 32 (37) Q Consensus 12 pkklirrsaslsk-psisegik 32 (37) -|.+|+|.|.++. -+.|+=+- T Consensus 14 ~k~li~rAA~l~G~~tls~Fv~ 35 (81) T d1y9ba1 14 TQDLLAKAAALAGMSSINSFVL 35 (81) T ss_dssp HHHHHHHHHHHTTCSCHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHH T ss_conf 9999999998709982899999 No 7 >d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]} Probab=2.00 E-value=2.4e+02 Score=11.62 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=8.8 Q ss_pred HCCCCCCHHHHHH Q ss_conf 1036700667678 Q 537021.9.peg.1 20 ASLSKPSISEGIK 32 (37) Q Consensus 20 aslskpsisegik 32 (37) -.-.|-||||.+- T Consensus 32 ~~~AKSsISEDl~ 44 (73) T d1o57a1 32 YESAKSSISEDLT 44 (73) T ss_dssp TTCCHHHHHHHHH T ss_pred HCHHHCHHHHHHH T ss_conf 6521020265799 No 8 >d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=1.81 E-value=3.1e+02 Score=11.12 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=7.7 Q ss_pred CCCCCCCCEEC Q ss_conf 94102571231 Q 537021.9.peg.1 1 LEFTLGDEVII 11 (37) Q Consensus 1 leftlgdevii 11 (37) .+|..||.|-| T Consensus 3 vdf~~Gd~V~I 13 (58) T d1nppa2 3 VEFEKGDQVRV 13 (58) T ss_dssp CSCCTTCEEEE T ss_pred CCCCCCCEEEE T ss_conf 55259999999 No 9 >d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]} Probab=1.80 E-value=1.6e+02 Score=12.43 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=15.3 Q ss_pred CHHHHHHHHHCCCCCCHHHHHH Q ss_conf 1399985331036700667678 Q 537021.9.peg.1 11 IPKKLIRRSASLSKPSISEGIK 32 (37) Q Consensus 11 ipkklirrsaslskpsisegik 32 (37) +.++.|.|-.-|++-+-++|+. T Consensus 2 m~~~~i~RINeLakK~K~~gLT 23 (42) T d2hepa1 2 ISNAKIARINELAAKAKAGVIT 23 (42) T ss_dssp CCSHHHHHHHHHHHHHHHHCCC T ss_pred CCHHHHHHHHHHHHHHHCCCCC T ss_conf 8889999999999874035999 No 10 >d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Probab=1.76 E-value=2e+02 Score=11.98 Aligned_cols=9 Identities=67% Similarity=1.184 Sum_probs=0.0 Q ss_pred CCCCCHHHH Q ss_conf 367006676 Q 537021.9.peg.1 22 LSKPSISEG 30 (37) Q Consensus 22 lskpsiseg 30 (37) ||.|+.||| T Consensus 8 lsep~v~eG 16 (84) T d2oz4a1 8 LTKPEVSEG 16 (84) T ss_dssp ESCSEEETT T ss_pred ECCCCCCCC T ss_conf 536757889 Done!