BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1058_1
         (37 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1058_1 
          Length = 37

 Score = 70.9 bits (172), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  LEFTLGDEVIIPKKLIRRSASLSKPSISEGIKKRIRV 37
          LEFTLGDEVIIPKKLIRRSASLSKPSISEGIKKRIRV
Sbjct: 1  LEFTLGDEVIIPKKLIRRSASLSKPSISEGIKKRIRV 37


>537021.9.peg.1101_1 
          Length = 37

 Score = 23.1 bits (48), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 5  LGDEVIIPKKL 15
           GDE+IIPKKL
Sbjct: 11 FGDEMIIPKKL 21


>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score = 21.6 bits (44), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 5   LGDEVIIPKKLIR 17
            GDEVI+PK + R
Sbjct: 174 FGDEVIVPKSIKR 186


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.138    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,376
Number of Sequences: 1233
Number of extensions: 389
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 37
length of database: 328,796
effective HSP length: 11
effective length of query: 26
effective length of database: 315,233
effective search space:  8196058
effective search space used:  8196058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)