RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.1064_1
         (238 letters)



>gnl|CDD|33922 COG4187, RocB, Arginine degradation protein (predicted deacylase)
           [Amino acid transport and metabolism].
          Length = 553

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 88  INNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPPQQLRDNDVPEKPNASLEERKEILYNYP 147
           +N   ++  +T+R+ +L       V+     PP  L   D+ E  N    ER  + +N+ 
Sbjct: 247 VNANFMASEITRRL-ELNADLADRVDGEITPPPSCLEQKDLKESYNVQTPERAWLYFNWL 305

Query: 148 TMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ 180
                +  K   DRL+   +   E+    L ++
Sbjct: 306 YHS--RTAKELFDRLKEEAETAAEEAIETLRDR 336


>gnl|CDD|35589 KOG0368, KOG0368, KOG0368, Acetyl-CoA carboxylase [Lipid transport
            and metabolism].
          Length = 2196

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 88   INNLLLSDLLTQRIQDLLPH--HHTHVNTTKDFPPQQLRDNDVPEKPNASLEERKEILYN 145
            +   L  D L + I    P   +       + +  +        +  +  +    E    
Sbjct: 2087 LRRRLAEDQLLKEILSASPDLTYKEKQAMLQKWFEESEGAVKWED--DQQVVTWIEEQST 2144

Query: 146  YPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHN 179
                  +  E   LD+L   +  DR+     L  
Sbjct: 2145 IEKNIEELKETYLLDQLAKLINSDRKGAIDGLAE 2178


>gnl|CDD|36022 KOG0804, KOG0804, KOG0804, Cytoplasmic Zn-finger protein BRAP2
           (BRCA1 associated protein) [General function prediction
           only].
          Length = 493

 Score = 26.5 bits (58), Expect = 6.3
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 159 LDRLQSSLQQDREDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERL 218
           L + Q  L+++RE+      N+ L+     W   + E   +  +   +   K +D QE+L
Sbjct: 391 LKKCQKELKEEREE------NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444

Query: 219 DNI 221
            ++
Sbjct: 445 RDL 447


>gnl|CDD|32986 COG3173, COG3173, Predicted aminoglycoside phosphotransferase
           [General function prediction only].
          Length = 321

 Score = 26.5 bits (58), Expect = 7.0
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 155 EKAFLDRLQSSLQQDREDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDE 214
           E A     +  +    E L T    +GL  G  A   A+          RLAA+ +A D 
Sbjct: 245 EPAARAIFRLGVPALDELLATYARARGLALGLWAAYIALAY-------FRLAAIPQAIDA 297

Query: 215 QERLDNIQEKHAY 227
           +  LD I   HA 
Sbjct: 298 RRALDGILADHAE 310


>gnl|CDD|39889 KOG4691, KOG4691, KOG4691, Uncharacterized conserved protein
           [Function unknown].
          Length = 227

 Score = 25.9 bits (56), Expect = 9.9
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 115 TKDFPPQQLRDNDVPEKPNASLEERKEIL-----YNYPTMGSQQYEKAFLDRLQSSLQQD 169
            +  P  + +   V   P    EE  E++     Y       +   ++ + R+  +    
Sbjct: 37  PRHLPLAKSKIERVNMPPAQDPEEFFELMERYQHYRQTVRSLRMEFRSEVQRVHEARAGV 96

Query: 170 REDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHA 226
             +              +AWN+A +    +L   RL     A +E+E+   I E+ A
Sbjct: 97  LIER-KAEKEAAEHRELMAWNQAENRRLHELRIARL-----AQEEREQEQRIAEEQA 147


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,778,468
Number of extensions: 139918
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 16
Length of query: 238
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,297,318
Effective search space: 631705746
Effective search space used: 631705746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)