RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.1064_1
(238 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.6 bits (87), Expect = 0.002
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 73/205 (35%)
Query: 70 LQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPPQQLRD---N 126
+ +YS P L LS ++ H V T F QL++
Sbjct: 1 MDAYSTRP-------------LTLSH---GSLE-----HVLLVPTASFFIASQLQEQFNK 39
Query: 127 DVPEKP--NASLEERK---EILYNYPTMGS---------------------QQYEKAFLD 160
+PE A+ +E E++ + +G ++E +L+
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 161 R-----LQSSLQQDREDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRLAAMLK-ASDE 214
L + L Q+ + K L+ + A R +A+ + +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKE--LIK---NYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 215 QERL-------DNIQEKHAYFHNLA 232
+L N + YF L
Sbjct: 153 NAQLVAIFGGQGNTDD---YFEELR 174
Score = 36.1 bits (83), Expect = 0.008
Identities = 39/269 (14%), Positives = 67/269 (24%), Gaps = 118/269 (43%)
Query: 6 ASLAPDPKAIASLQLS--ANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFIG-- 61
A L + N A A R D+ + +++ G +++ F G
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 62 ---------REISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHV 112
R++ Y Q+Y H L+ DL+ + + L
Sbjct: 165 NTDDYFEELRDL----Y-QTY--HV--------------LVGDLI-KFSAETLSELIRTT 202
Query: 113 NTTKDFPPQQLRDNDV------PEK-PNA--------SLEERKEILYNYPTMG-SQ--QY 154
+ Q L ++ P P+ S P +G Q Y
Sbjct: 203 LDAEKVFTQGL---NILEWLENPSNTPDKDYLLSIPISC----------PLIGVIQLAHY 249
Query: 155 E----------KAFLDRLQSSLQQDREDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVR 204
L+ + T H+QGLV+
Sbjct: 250 VVTAKLLGFTPGELRSYLKGA---------TG-HSQGLVT-------------------- 279
Query: 205 LAAMLKASDEQERLDNIQEKHAYFHNLAQ 233
A + +D E F +
Sbjct: 280 -AVAIAETDSWES----------FFVSVR 297
Score = 28.4 bits (63), Expect = 1.3
Identities = 9/85 (10%), Positives = 16/85 (18%), Gaps = 36/85 (42%)
Query: 46 QYKTSGVDKIIDSFIGREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLL 105
D I + +S D+ +I
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNA-------------------------KDI---QI---- 457
Query: 106 PHHHTHVNTTKDFPPQQLRDNDVPE 130
P + T D + L +
Sbjct: 458 PVYDTF--DGSDL--RVLSGSISER 478
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.3 bits (72), Expect = 0.11
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 155 EKAFLDRLQSSLQQDRED----LETK 176
EK L +LQ+SL+ +D L K
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
Score = 28.8 bits (63), Expect = 1.1
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 11 DPKAIASLQLSANL-ANASANA 31
+ +A+ LQ S L A+ SA A
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
Score = 27.3 bits (59), Expect = 2.9
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 3 KQRASLAPDPKAI-ASLQLSANLANASANAYRENID 37
KQ +L K + ASL+L A+ +A A A + ++
Sbjct: 19 KQ--AL----KKLQASLKLYAD-DSAPALAIKATME 47
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 29.6 bits (66), Expect = 0.63
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 28/151 (18%)
Query: 1 MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKT--SGVDKIIDS 58
MG+ A A P A+A L+A E + +G+ + KT G
Sbjct: 1 MGQPPAEEAEQPGALAREFLAAMXXXXXXXXXXEEWLDILGNGLLRKKTLVPGPPGSSRP 60
Query: 59 FIGREISIPHYL-------QSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTH 111
G+ +++ H + + + + I + +P
Sbjct: 61 VKGQVVTV-HLQTSLENGTRVQEEPELVFTLGDCDVIQA----------LDLSVPLMDVG 109
Query: 112 VNTTKDFPPQQ------LRDNDVPEKPNASL 136
+ R +P P+A+L
Sbjct: 110 ETAMVTADSKYCYGPQGSRSPYIP--PHAAL 138
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 389
Score = 28.1 bits (62), Expect = 1.9
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 137 EERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQGLVSGSVAWNRAIDET 196
E +I+ T Q+ + + ++ RE++ +G V G++ D
Sbjct: 117 IEGNKIVSEENTWDEQKESDSVIVDIEVFTSLLREEMLILSKEKGKVVGNLRIRSGNDVI 176
Query: 197 NRKLHDVRLAAMLKASDEQERLDN------IQEKHAYFHNLAQ 233
+ A+ D + +D + EK A F L +
Sbjct: 177 DLSKTGHGAYAIEPTPDLIDFIDVDAEFVLVVEKDAVFQQLHR 219
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2,
structural genomics, PSI, protein structure initiative;
3.00A {Pseudomonas aeruginosa}
Length = 428
Score = 27.4 bits (60), Expect = 3.3
Identities = 10/76 (13%), Positives = 21/76 (27%)
Query: 71 QSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPPQQLRDNDVPE 130
+ SL N + + L+ I +L H + N Q + +
Sbjct: 119 RDLSLAGRVTFRANGKLESRLVDFRKAIAVIPNLNIHLNRAANEGWPINAQNELPPIIAQ 178
Query: 131 KPNASLEERKEILYNY 146
+ + +L
Sbjct: 179 LAPGEAADFRLLLDEQ 194
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
alternative splicing, GTPase activation, metal-binding,
phorbol-ester binding; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 27.0 bits (59), Expect = 4.1
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 10/113 (8%)
Query: 66 IPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPH-HHTHVNTTKDFPPQQLR 124
I Y+++ + I + N + + + +P TH
Sbjct: 126 ITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVSE 185
Query: 125 DNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKL 177
A+L+E ++I +YEK ++ + +
Sbjct: 186 KRLTSLVRRATLKENEQI---------PKYEKIHNFKVHTFRGPHWCEYCANF 229
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; HET:
MES; 2.00A {Methanocaldococcus jannaschii} SCOP:
c.55.3.1
Length = 230
Score = 25.8 bits (56), Expect = 8.2
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 170 REDLETKLHNQGLVSGSVAWNRAIDETNRK--LHDVRLAAMLKA 211
R L+ L N G V + I++ L+D+ + A K
Sbjct: 49 RAYLKKLLENLGYVEKRILEAEEINQLMNSINLNDIEINAFSKV 92
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.130 0.369
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,936,796
Number of extensions: 84805
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 21
Length of query: 238
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 148
Effective length of database: 3,511,270
Effective search space: 519667960
Effective search space used: 519667960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.4 bits)