BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.1064_1 (238 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.1064_1 Length = 238 Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFI 60 MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFI Sbjct: 1 MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFI 60 Query: 61 GREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPP 120 GREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPP Sbjct: 61 GREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPP 120 Query: 121 QQLRDNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ 180 QQLRDNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ Sbjct: 121 QQLRDNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ 180 Query: 181 GLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYFHNLAQAQGLQ 238 GLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYFHNLAQAQGLQ Sbjct: 181 GLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYFHNLAQAQGLQ 238 >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 29.3 bits (64), Expect = 0.056, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 132 PNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQGLVSGSVAWNR 191 PN SLE+ +L NY T+ +YE A + +L E L T + + L + + W R Sbjct: 22 PNVSLEK---VLQNYATIAHAKYEDALM--CARTLDSAIETLVTTPNKKNLENARLQWIR 76 Query: 192 A 192 A Sbjct: 77 A 77 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 188 AWNRAIDETNRKLHDVRLAAMLK 210 AWN I++++RK D R + +K Sbjct: 29 AWNTIIEDSSRKESDQRFSKTIK 51 >gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 19/43 (44%) Query: 63 EISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLL 105 EI ++SY L P Q R NI SD+L + D + Sbjct: 305 EIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFM 347 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.130 0.369 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 148,374 Number of Sequences: 1233 Number of extensions: 5868 Number of successful extensions: 13 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 9 length of query: 238 length of database: 328,796 effective HSP length: 71 effective length of query: 167 effective length of database: 241,253 effective search space: 40289251 effective search space used: 40289251 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 37 (18.9 bits)