Query 537021.9.peg.1073_1 Match_columns 162 No_of_seqs 114 out of 241 Neff 7.0 Searched_HMMs 33803 Date Wed May 25 05:49:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1073.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ohg_A Major capsid protein; 96.2 0.091 2.7E-06 30.6 11.0 130 6-154 143-278 (282) 2 >1wrj_A Methylated-DNA--protei 23.6 50 0.0015 14.2 2.5 16 75-90 5-20 (36) 3 >1dkg_D Molecular chaperone DN 22.0 54 0.0016 14.0 4.2 50 3-52 36-94 (97) 4 >2e0z_A Virus-like particle; b 17.8 67 0.002 13.5 9.7 113 16-152 230-344 (345) 5 >1r7a_A Sucrose phosphorylase; 17.7 68 0.002 13.5 3.3 25 10-34 73-97 (108) 6 >3gjy_A Spermidine synthase; A 14.6 81 0.0024 13.0 3.8 21 74-94 24-44 (64) 7 >1msw_D DNA-directed RNA polym 10.7 1.1E+02 0.0032 12.3 1.8 17 16-32 53-69 (242) 8 >2pk8_A Uncharacterized protei 9.0 1.2E+02 0.0037 11.9 5.5 36 15-50 19-54 (103) 9 >2v33_A E1 envelope glycoprote 8.3 1.3E+02 0.0038 11.8 0.8 17 72-88 12-28 (91) 10 >2jtt_C Calcyclin-binding prot 8.2 1.3E+02 0.0039 11.7 2.0 24 16-47 6-29 (35) No 1 >>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97} (A:) Probab=96.21 E-value=0.091 Score=30.58 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=88.6 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEE Q ss_conf 78886531789999999999976998348999499999999861243113454214677655415556789971842679 Q 537021.9.peg.1 6 KDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVM 85 (162) Q Consensus 6 t~GT~~~lTE~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sdfG~v~ 85 (162) +.......+.+.+.+++.++..++.++..++++|.....+.++-....++--. ....+.. ..+-.++ T Consensus 143 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~vm~~~~~~~l~~lkd~~g~~l~~--~~~~~~~-----------~~l~G~p 209 (282) T 1ohg_A 143 SLNATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFG--GPQAFTS-----------NIMWGLP 209 (282) T ss_dssp GGCCTTCCHHHHHHHHHHHTGGGTSCCCEEEECHHHHHHHHTCBCTTSCBTTT--TTTSCCC-----------SEETTEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHEECCCCCEEEC--CCCCCCC-----------CEECCEE T ss_conf 11235654146799999867644566755998053644565212689966531--3455776-----------4035703 Q ss_pred EEECCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCC------CCEEEEEEEEEEEEEECHHHCEEEEC Q ss_conf 9825656887644205999846454531027642000136678------82267999998758708000689974 Q 537021.9.peg.1 86 VHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNG------DANKGVLIGEGALKVRNEKAVGVVAD 154 (162) Q Consensus 86 ivpnr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktG------D~~k~~i~~E~tL~~~n~~a~g~I~d 154 (162) |+.+..||.+ ++++.|+....+-+.|.-...+ ....+ +.....+...+...+.+|+|..++.. T Consensus 210 V~~~~~~~~~-----~~~~gd~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~a~~~~~~ 278 (282) T 1ohg_A 210 VVPTKAQAAG-----TFTVGGFDMASQVWDRMDATVE-VSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTF 278 (282) T ss_dssp EEECTTSCTT-----EEEEECHHHHEEEEESEEEEEE-EESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEEEC T ss_pred EEECCCCCCC-----EEEEEECCCEEEEEEECCCEEE-EECCCCHHHHCCEEEEEEEEEEEEEEECCCEEEEEEE T ss_conf 7871788766-----0688504441799991240899-9505410655890999999998437706882999998 No 2 >>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii} (A:1-36) Probab=23.58 E-value=50 Score=14.22 Aligned_cols=16 Identities=38% Similarity=0.839 Sum_probs=12.8 Q ss_pred EEEECCCEEEEEEECC Q ss_conf 8997184267998256 Q 537021.9.peg.1 75 DIYDRPFGKVMVHPNR 90 (162) Q Consensus 75 d~y~sdfG~v~ivpnr 90 (162) .+|.|+||.+.++-+. T Consensus 5 G~Y~SP~G~ITvak~~ 20 (36) T 1wrj_A 5 GLYKSPFGPITVAKNE 20 (36) T ss_dssp EEEEETTEEEEEEECS T ss_pred EEEECCCCEEEEEEEC T ss_conf 9998961128999989 No 3 >>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:183-227,D:312-363) Probab=22.01 E-value=54 Score=14.03 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=38.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC----EEEEC-----HHHHHHHHHHHCCC Q ss_conf 5567888653178999999999997699834----89994-----99999999861243 Q 537021.9.peg.1 3 KKAKDGTQRTFSKQILDEVMQEGYQNGDNFR----HIIVS-----PYVKSEFVRFMSDS 52 (162) Q Consensus 3 ~~~t~GT~~~lTE~~l~~~lq~i~~~GG~~~----~i~v~-----p~~K~~is~f~~~~ 52 (162) ..+++|.+.-|-|....-+-+.+.++|=+++ ++++| |..++.+..+++.. T Consensus 36 v~a~~G~~~lL~er~~~~i~~aL~~Agl~~~dId~ViLVGGsSRIP~Vq~~L~~~fGke 94 (97) T 1dkg_D 36 VLATNGDTHLLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 94 (97) T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSC T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 99806997759999999999999984989889998999892541789999999986889 No 4 >>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} (A:) Probab=17.84 E-value=67 Score=13.48 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=64.8 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCC Q ss_conf 99999999999769983489994999999998612431134542146776554155567899718426799825656887 Q 537021.9.peg.1 16 QILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASN 95 (162) Q Consensus 16 ~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sdfG~v~ivpnr~~~~~ 95 (162) ..+-.++.++...|-.|-.+.++|..-..++....++.... -..| ...=.-+|++.+.+..+ T Consensus 230 ~~i~~a~~~l~~~~~gpy~lvl~~~~y~~l~~~~~~~g~~~----------~~~i--------~~l~~g~i~~~p~i~~~ 291 (345) T 2e0z_A 230 NDLMNALQEASNASAGPFGLIINPKRYAKLLKIYEKSGKML----------VEVL--------KEIFRGGIIVTLNIDEN 291 (345) T ss_dssp HHHHHHHHHHHTTCCSCEEEEECHHHHHHHCSBCSTTSCBH----------HHHH--------HHHCTTEEEECTTSCTT T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCCH----------HHHH--------HHHHCCCEEECCCCCCC T ss_conf 99999999999548898699988899999852367899718----------9999--------99867986876740588 Q ss_pred CCCCEEEEEEC--HHHEEEEECCCCCEECCCCCCCCCEEEEEEEEEEEEEECHHHCEEE Q ss_conf 64420599984--6454531027642000136678822679999987587080006899 Q 537021.9.peg.1 96 AETARNAFLID--PNMLEFLWLRTIHEDKNIAKNGDANKGVLIGEGALKVRNEKAVGVV 152 (162) Q Consensus 96 ~~~~~~~~ilD--~~~~~~~~Lr~~~~~e~laktGD~~k~~i~~E~tL~~~n~~a~g~I 152 (162) .++++. +..+.+..=..+ ....+...++.....+.--+++.+++|.|.-.+ T Consensus 292 -----~a~l~s~~~~~~~l~~g~d~-~i~y~~~~~~~~~~~~~E~~~~~v~~~~a~v~l 344 (345) T 2e0z_A 292 -----KVIIFANTPAVLDVVVGQDV-TLQELGPEGDDVAFLVSEAIGIRIKNPEAIVVL 344 (345) T ss_dssp -----CEEEEECSTTTEEEEEEEEE-EEEECCCCSSEEEEEEEEEEEEEESCGGGEEEE T ss_pred -----EEEEEECCCCCEEEEEECCE-EEEECCCCCCEEEEEEEEEEEEEECCCCEEEEC T ss_conf -----18999768986589972332-552014678707999998889897388658860 No 5 >>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} (A:235-342) Probab=17.65 E-value=68 Score=13.46 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=21.2 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCE Q ss_conf 6531789999999999976998348 Q 537021.9.peg.1 10 QRTFSKQILDEVMQEGYQNGDNFRH 34 (162) Q Consensus 10 ~~~lTE~~l~~~lq~i~~~GG~~~~ 34 (162) ..-|++..++.+++.|.++||..+. T Consensus 73 ~GLL~~eei~~lv~~~~~~Gg~vs~ 97 (108) T 1r7a_A 73 KGLVPDEDVDNLVNTIHANTHGESQ 97 (108) T ss_dssp CCSSCHHHHHHHHHHHHHHTTTHHH T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 4245579999999997652267763 No 6 >>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} (A:1-64) Probab=14.61 E-value=81 Score=12.99 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=17.9 Q ss_pred EEEEECCCEEEEEEECCCCCC Q ss_conf 789971842679982565688 Q 537021.9.peg.1 74 ADIYDRPFGKVMVHPNRVMAS 94 (162) Q Consensus 74 vd~y~sdfG~v~ivpnr~~~~ 94 (162) .-+|..|+|+..++|+++-+. T Consensus 24 ~~~~~vd~G~aeL~pD~~r~~ 44 (64) T 3gjy_A 24 AGTYEGEYSVIELEADSYTTD 44 (64) T ss_dssp CEEEECSSSEEEEEECSSSTT T ss_pred CEEEECCCEEEEEEECCCCCC T ss_conf 216743756899996788898 No 7 >>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} (D:280-450,D:529-539,D:780-839) Probab=10.66 E-value=1.1e+02 Score=12.26 Aligned_cols=17 Identities=6% Similarity=-0.312 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999999769983 Q 537021.9.peg.1 16 QILDEVMQEGYQNGDNF 32 (162) Q Consensus 16 ~~l~~~lq~i~~~GG~~ 32 (162) ..+.++++.+|++||.. T Consensus 53 ~~vLdvi~~~w~~gg~~ 69 (242) T 1msw_D 53 KKVLAVANVITKWKHCP 69 (242) T ss_dssp HHHHHHHHHHTTCSSCS T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 89999999999616886 No 8 >>2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} (A:) Probab=8.99 E-value=1.2e+02 Score=11.88 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHC Q ss_conf 899999999999769983489994999999998612 Q 537021.9.peg.1 15 KQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMS 50 (162) Q Consensus 15 E~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~ 50 (162) ...+...++..-..|=+|+++++||--...++.... T Consensus 19 l~~iEekinELk~dG~ePDiiL~G~eayef~~~~vk 54 (103) T 2pk8_A 19 LGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLK 54 (103) T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH T ss_conf 999999999998658998779985899999999998 No 9 >>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} (A:) Probab=8.28 E-value=1.3e+02 Score=11.76 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=12.1 Q ss_pred EEEEEEECCCEEEEEEE Q ss_conf 56789971842679982 Q 537021.9.peg.1 72 ATADIYDRPFGKVMVHP 88 (162) Q Consensus 72 ~svd~y~sdfG~v~ivp 88 (162) .+-=.|-+|||.+..+. T Consensus 12 v~~CtySsDFGGvati~ 28 (91) T 2v33_A 12 VATCTHSSDFGGVLTLT 28 (91) T ss_dssp EEEEBCEEEEEEEEEEE T ss_pred EEEEEECCCCCCEEEEE T ss_conf 77878124767769999 No 10 >>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus} (C:) Probab=8.23 E-value=1.3e+02 Score=11.69 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH Q ss_conf 99999999999769983489994999999998 Q 537021.9.peg.1 16 QILDEVMQEGYQNGDNFRHIIVSPYVKSEFVR 47 (162) Q Consensus 16 ~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~ 47 (162) +-|-++|+++|+.|-+. .||.|++ T Consensus 6 ~~lM~~mK~mY~~GDde--------mKrtI~k 29 (35) T 2jtt_C 6 EGLMNVLKKIYEDGDDD--------MKRTINK 29 (35) T ss_dssp CSHHHHHHHHHTTCCSS--------HHHHHHH T ss_pred HHHHHHHHHHHHCCCHH--------HHHHHHH T ss_conf 89999999998817699--------9999999 Done!