Query 537021.9.peg.1073_1
Match_columns 162
No_of_seqs 114 out of 241
Neff 7.0
Searched_HMMs 23785
Date Wed May 25 08:02:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1073.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ohg_A Major capsid protein; v 85.9 1.8 7.5E-05 22.0 11.5 125 9-152 146-276 (282)
2 2e0z_A Virus-like particle; ba 34.0 23 0.00097 15.3 7.0 111 18-152 232-344 (345)
3 3gjy_A Spermidine synthase; AP 21.3 23 0.00098 15.3 0.8 44 75-118 25-74 (317)
4 3llm_A ATP-dependent RNA helic 20.7 38 0.0016 14.0 1.8 24 17-40 93-118 (235)
5 3h6x_A Dutpase; jelly-roll bet 12.8 64 0.0027 12.7 2.5 15 125-139 113-127 (148)
6 2jtt_C Calcyclin-binding prote 9.1 86 0.0036 11.9 2.0 24 16-47 6-29 (35)
7 2v33_A E1 envelope glycoprotei 9.0 82 0.0035 12.0 0.8 47 73-128 13-59 (91)
8 2pk8_A Uncharacterized protein 8.2 95 0.004 11.7 5.5 35 16-50 20-54 (103)
9 1ujc_A Phosphohistidine phosph 7.3 1E+02 0.0044 11.4 3.9 35 9-43 19-56 (161)
10 3c2t_A Deoxyuridine triphospha 7.2 1E+02 0.0044 11.4 1.7 64 70-134 72-136 (141)
No 1
>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97} SCOP: d.183.1.1 PDB: 2frp_A 2fsy_A 2ft1_A 2fte_A 3ddx_A 2gp1_A 2fs3_A 3e8k_A 1if0_A
Probab=85.91 E-value=1.8 Score=21.96 Aligned_cols=125 Identities=12% Similarity=0.069 Sum_probs=77.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 86531789999999999976998348999499999999861243113454214677655415556789971842679982
Q 537021.9.peg.1 9 TQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHP 88 (162)
Q Consensus 9 T~~~lTE~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sdfG~v~ivp 88 (162)
+....+.+.+.+++.++-.++.++..++++|.....+..+-....++-. ......... +=+| ++|+.
T Consensus 146 ~~~~~~~d~~~~~~~~l~~~~~~~~~~vmn~~~~~~l~~lkd~~G~~~~--~~~~~~~~~----------~l~G-~Pv~~ 212 (282)
T 1ohg_A 146 ATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIF--GGPQAFTSN----------IMWG-LPVVP 212 (282)
T ss_dssp CTTCCHHHHHHHHHHHTGGGTSCCCEEEECHHHHHHHHTCBCTTSCBTT--TTTTSCCCS----------EETT-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHEECCCCCEEE--CCCCCCCCC----------CCCC-EEEEE
T ss_conf 3345314568999987775356676599931434446410367886530--354446777----------1066-26997
Q ss_pred CCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCC------CCEEEEEEEEEEEEEECHHHCEEE
Q ss_conf 5656887644205999846454531027642000136678------822679999987587080006899
Q 537021.9.peg.1 89 NRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNG------DANKGVLIGEGALKVRNEKAVGVV 152 (162)
Q Consensus 89 nr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktG------D~~k~~i~~E~tL~~~n~~a~g~I 152 (162)
+..|+++ ++++.|.+....-+.|.-...+ +.... |-.....+..+++.+++|+|.-++
T Consensus 213 s~~v~~~-----~~~~gdf~~~~~~~~r~~~~v~-~~~~~~~~f~~~~v~~ra~~r~~~~v~~p~A~v~~ 276 (282)
T 1ohg_A 213 TKAQAAG-----TFTVGGFDMASQVWDRMDATVE-VSREDRDNFVKNMLTILCEERLALAHYRPTAIIKG 276 (282)
T ss_dssp CTTSCTT-----EEEEECHHHHEEEEESEEEEEE-EESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEE
T ss_pred ECCCCCC-----CEEEECCCCEEEEEECCCCEEE-EECCCCHHHHCCCEEEEEEEEEEEEEECCCEEEEE
T ss_conf 2788766-----1476110003899980340899-92254106557909999999985157078809999
No 2
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}
Probab=34.01 E-value=23 Score=15.33 Aligned_cols=111 Identities=14% Similarity=0.219 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf 99999999976998348999499999999861243113454214677655415556789971842679982565688764
Q 537021.9.peg.1 18 LDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAE 97 (162)
Q Consensus 18 l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sdfG~v~ivpnr~~~~~~~ 97 (162)
+-.++.++-..|-.|-.++++|..-..+.....++... .. ..+ ..=++ -+|+....++.+.
T Consensus 232 V~~Av~~L~~~~~GPy~Lvlsp~~y~~L~r~~~~tG~~-e~---------~~I-------k~l~~-g~Ii~sp~i~~g~- 292 (345)
T 2e0z_A 232 LMNALQEASNASAGPFGLIINPKRYAKLLKIYEKSGKM-LV---------EVL-------KEIFR-GGIIVTLNIDENK- 292 (345)
T ss_dssp HHHHHHHHHTTCCSCEEEEECHHHHHHHCSBCSTTSCB-HH---------HHH-------HHHCT-TEEEECTTSCTTC-
T ss_pred HHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCC-HH---------HHH-------HHHHC-CCEEECCCCCCCE-
T ss_conf 99999999964889869998889999985335889971-89---------999-------99867-9868677537985-
Q ss_pred CCEEEEEE--CHHHEEEEECCCCCEECCCCCCCCCEEEEEEEEEEEEEECHHHCEEE
Q ss_conf 42059998--46454531027642000136678822679999987587080006899
Q 537021.9.peg.1 98 TARNAFLI--DPNMLEFLWLRTIHEDKNIAKNGDANKGVLIGEGALKVRNEKAVGVV 152 (162)
Q Consensus 98 ~~~~~~il--D~~~~~~~~Lr~~~~~e~laktGD~~k~~i~~E~tL~~~n~~a~g~I 152 (162)
++++ ++.++.+..-..+ ....+...++.....+.--+++.+++|.|.-.+
T Consensus 293 ----Avlvs~~~~~~dL~vGqDl-sv~Yl~~~~~~~~f~i~Es~t~rv~~peAivvL 344 (345)
T 2e0z_A 293 ----VIIFANTPAVLDVVVGQDV-TLQELGPEGDDVAFLVSEAIGIRIKNPEAIVVL 344 (345)
T ss_dssp ----EEEEECSTTTEEEEEEEEE-EEEECCCCSSEEEEEEEEEEEEEESCGGGEEEE
T ss_pred ----EEEEECCCCCEEEEEECCE-EEECCCCCCCEEEEEEEEEEEEEECCCCEEEEE
T ss_conf ----9999669875699982440-540234678607999998888786499658960
No 3
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=21.25 E-value=23 Score=15.31 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=27.1
Q ss_pred EEEECCCEEEEEEECCCCCCCC------CCCEEEEEECHHHEEEEECCCC
Q ss_conf 8997184267998256568876------4420599984645453102764
Q 537021.9.peg.1 75 DIYDRPFGKVMVHPNRVMASNA------ETARNAFLIDPNMLEFLWLRTI 118 (162)
Q Consensus 75 d~y~sdfG~v~ivpnr~~~~~~------~~~~~~~ilD~~~~~~~~Lr~~ 118 (162)
..|.++||++.++++++.+... ..-..+.+=||.++.+.|.|-+
T Consensus 25 ~~~~~~~g~~~~~~d~~~~~~~~l~~~g~~qS~v~l~dP~~L~~~Y~r~m 74 (317)
T 3gjy_A 25 GTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWI 74 (317)
T ss_dssp EEEECSSSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHH
T ss_pred CEEECCCEEEEEEECCCCCCCEEEEECCEECCCEECCCCCCCCCHHHHHH
T ss_conf 16844771799986587898479988998622063689741033999999
No 4
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=20.73 E-value=38 Score=14.03 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHCCCC-C-CEEEECHH
Q ss_conf 999999999976998-3-48999499
Q 537021.9.peg.1 17 ILDEVMQEGYQNGDN-F-RHIIVSPY 40 (162)
Q Consensus 17 ~l~~~lq~i~~~GG~-~-~~i~v~p~ 40 (162)
.-.-+++..|..|.. . +++++-|.
T Consensus 93 iPq~Lle~~~~~~~~~~~~I~~tqPR 118 (235)
T 3llm_A 93 VPQFILDDFIQNDRAAECNIVVTQPR 118 (235)
T ss_dssp HHHHHHHHHHHTTCGGGCEEEEEESS
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 99999986764278888659996373
No 5
>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus mutans}
Probab=12.82 E-value=64 Score=12.68 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=7.9
Q ss_pred CCCCCCEEEEEEEEE
Q ss_conf 667882267999998
Q 537021.9.peg.1 125 AKNGDANKGVLIGEG 139 (162)
Q Consensus 125 aktGD~~k~~i~~E~ 139 (162)
-+-||-.-.+++.++
T Consensus 113 i~~G~RIaQlv~~p~ 127 (148)
T 3h6x_A 113 LEAGERVVQGVFMPF 127 (148)
T ss_dssp ECTTCEEEEEEEEEC
T ss_pred ECCCCEEEEEEEEEE
T ss_conf 759997988998657
No 6
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=9.08 E-value=86 Score=11.91 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH
Q ss_conf 99999999999769983489994999999998
Q 537021.9.peg.1 16 QILDEVMQEGYQNGDNFRHIIVSPYVKSEFVR 47 (162)
Q Consensus 16 ~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~ 47 (162)
+.|-++|+++|+.|-+. .||.|++
T Consensus 6 ~glM~~mK~mY~~GDde--------mKrtIak 29 (35)
T 2jtt_C 6 EGLMNVLKKIYEDGDDD--------MKRTINK 29 (35)
T ss_dssp CSHHHHHHHHHTTCCSS--------HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH--------HHHHHHH
T ss_conf 89999999999816589--------9999999
No 7
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=8.98 E-value=82 Score=12.04 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=23.1
Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCC
Q ss_conf 67899718426799825656887644205999846454531027642000136678
Q 537021.9.peg.1 73 TADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNG 128 (162)
Q Consensus 73 svd~y~sdfG~v~ivpnr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktG 128 (162)
+-=.|-+|||.+..+. +.... ..+.-+--+ -..+.||.. +.++...|
T Consensus 13 ~~CtySsDFGGvAtl~--Y~~~k---~GkCaVHs~--S~~atl~es--~v~v~~~G 59 (91)
T 2v33_A 13 ATCTHSSDFGGVLTLT--YKTNK---NGDCSVHSH--SNVATLQEA--TAKVKTAG 59 (91)
T ss_dssp EEEBCEEEEEEEEEEE--EEESS---CEEEEEECC--CSSEEESBS--EEEECTTC
T ss_pred EEEEECCCCCCEEEEE--EECCC---CCCCCEECC--CCCEEEEEE--EEEHHCCC
T ss_conf 7878213767779999--71577---702627826--881787870--59711175
No 8
>2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=8.16 E-value=95 Score=11.67 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHC
Q ss_conf 99999999999769983489994999999998612
Q 537021.9.peg.1 16 QILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMS 50 (162)
Q Consensus 16 ~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~ 50 (162)
..+...++..-..|=+|+++++||--...++....
T Consensus 20 ~~iEekinELk~dG~ePDiiL~G~eayef~~~~vk 54 (103)
T 2pk8_A 20 GEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLK 54 (103)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99999999998658998779985899999999998
No 9
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=7.30 E-value=1e+02 Score=11.43 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHH---HHHHHCCCCCCEEEECHHHHH
Q ss_conf 86531789999999---999976998348999499999
Q 537021.9.peg.1 9 TQRTFSKQILDEVM---QEGYQNGDNFRHIIVSPYVKS 43 (162)
Q Consensus 9 T~~~lTE~~l~~~l---q~i~~~GG~~~~i~v~p~~K~ 43 (162)
.+|+||+.-..++- +.+-+.|-.|+.|+++|..+.
T Consensus 19 ~~RpLt~~G~~qa~~l~~~L~~~~~~~d~v~sSp~~Ra 56 (161)
T 1ujc_A 19 SVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRA 56 (161)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHTTCCCCEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHH
T ss_conf 78988999999999999999856999898985885789
No 10
>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} PDB: 3c3i_A*
Probab=7.20 E-value=1e+02 Score=11.40 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEEEEECCC-EEEEEEECCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCCCCEEEE
Q ss_conf 555678997184-26799825656887644205999846454531027642000136678822679
Q 537021.9.peg.1 70 IVATADIYDRPF-GKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNGDANKGV 134 (162)
Q Consensus 70 i~~svd~y~sdf-G~v~ivpnr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktGD~~k~~ 134 (162)
+.++..++.+|| |++.+...++-..+..-...--|.+.-...+.. ..+..+++|.+|-=+++++
T Consensus 72 L~~~~GvID~gYrGei~v~l~N~~~~~~~i~~G~RIaQlv~~~~~~-~~~~~v~~l~~t~Rg~~GF 136 (141)
T 3c2t_A 72 IDVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQLILEQIVT-PGVAVVLDLSDTARGSGGF 136 (141)
T ss_dssp EEECCCEECTTCCSCCEEEEEECSSSCEEECTTCEEEEEEEEECCC-CCCCCCCC-----------
T ss_pred EEEECEEECCCCCCEEEEEEEECCCCCEEECCCCEEEEEEECCCCC-EEEEEECCCCCCCCCCCCC
T ss_conf 7974537978888289999998999977710899999999636572-1599933178752468988
Done!