RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.1073_1
         (162 letters)



>gnl|CDD|130862 TIGR01803, CM-like, chorismate mutase related enzymes.  This
           subfamily includes two enzymes which are variants on the
           mechanism of chorismate mutase and are likely to have
           evolved from an ancestral chorismate mutase enzyme.
           4-amino-4-deoxy-chorismate mutase produces
           amino-deoxy-prephenate which is subsequently converted
           to para-dimethylamino-phenylalanine, a component of the
           natural product pristinamycin. Isochorismate-pyruvate
           lyase presumably catalyzes the same type of 2+2+2
           cyclo-rearrangement as chorismate mutase, but acting on
           isochorismate, this results in two broken bonds instead
           of one broken and one made. The product of this reaction
           is salicylate (2-hydroxy-benzoate) which is also
           incorporated into various natural products.
          Length = 82

 Score = 32.9 bits (75), Expect = 0.041
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 70  IVATADIYDRPFGKVMVHPNRVMASNAETARNA--FLIDPNMLEFLWLRTIHE 120
            V  A  + R     +  P RV A     AR A    +DP  +E L+ + IH 
Sbjct: 25  YVKRASEFKRSHEAAIPAPERVAAVLPNAARWAEENGLDPPFVEGLFAQIIHW 77


>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase.  This enzyme is part
           of the tagatose-6-phosphate pathway of
           galactose-6-phosphate degradation.
          Length = 467

 Score = 27.0 bits (59), Expect = 2.5
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 62  SGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHED 121
            G   + T+     I     G++ +      A +         +  N     W++    +
Sbjct: 251 LGHYSDKTMEGVNHILAENGGELDLRDEDFQALD-AAKDLNDFLGINYYMSDWMQAFDGE 309

Query: 122 KNIAKNGDANKG 133
             I  NG   KG
Sbjct: 310 TEIIHNGKGEKG 321


>gnl|CDD|149602 pfam08604, Nup153, Nucleoporin Nup153-like.  This family contains
           both the nucleoporin Nup153 from human and Nup153 from
           fission yeast. These have been demonstrated to be
           functionally equivalent.
          Length = 519

 Score = 26.6 bits (58), Expect = 3.1
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 53  NVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARNA 102
           N+++F    S  S N++I+  + + D PF      P +     A  AR++
Sbjct: 124 NLSAFG-TLSPSSGNDSILNLSQLGDSPFY-----PGKTTYGGAAAARSS 167


>gnl|CDD|180219 PRK05716, PRK05716, methionine aminopeptidase; Validated.
          Length = 252

 Score = 25.9 bits (58), Expect = 4.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 116 RTIHEDKNIAKNGDANKGVLIGEG 139
           R  HE+  I   G    G ++ EG
Sbjct: 173 RKFHEEPQIPHYGAPGDGPVLKEG 196


>gnl|CDD|183884 PRK13189, PRK13189, peroxiredoxin; Provisional.
          Length = 222

 Score = 26.1 bits (58), Expect = 4.7
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)

Query: 85  MVHPNRVMASNAETARNAFLIDPN 108
           M+ P +   +N  T R  F+IDP 
Sbjct: 116 MISPGK--GTN--TVRAVFIIDPK 135


>gnl|CDD|180923 PRK07309, PRK07309, aromatic amino acid aminotransferase;
           Validated.
          Length = 391

 Score = 25.8 bits (57), Expect = 5.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 10/40 (25%)

Query: 97  ETARNAFLIDPNMLEFLWLRTIHEDKNIAKNGDANKGVLI 136
           +T  N F++ P MLE          K I + GD  K V++
Sbjct: 143 DTTENDFVLTPEMLE----------KAILEQGDKLKAVIL 172


>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase.
          Length = 608

 Score = 25.6 bits (56), Expect = 6.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 13  FSKQILDEVMQEGYQNG 29
           F+KQ +DE+++ GY NG
Sbjct: 556 FTKQEIDEIVEIGYLNG 572


>gnl|CDD|172631 PRK14142, PRK14142, heat shock protein GrpE; Provisional.
          Length = 223

 Score = 25.3 bits (55), Expect = 7.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 14  SKQILDEVMQEGYQNGDN-FRHIIV 37
           SK ++  VM++GYQ G+   RH +V
Sbjct: 154 SKPVIGTVMRQGYQLGEQVLRHALV 178


>gnl|CDD|183006 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional.
          Length = 420

 Score = 25.3 bits (56), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 62  SGKSHNNTIVATADIYDRP 80
              +  + IV TAD+ DR 
Sbjct: 89  KPGTEPDEIVFTADVIDRA 107


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,538,092
Number of extensions: 146976
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 17
Length of query: 162
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,136,185
Effective search space: 314350060
Effective search space used: 314350060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)