RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 537021.9.peg.1073_1
(162 letters)
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 26.7 bits (58), Expect = 1.1
Identities = 6/81 (7%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Query: 28 NGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVH 87
GD+ R + + P + + + + + T + + P +
Sbjct: 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP------ATHMPVYTHHSFPLIPPGIP 244
Query: 88 PNRVMASNAETARNAFLIDPN 108
+ + +
Sbjct: 245 DRDPETGKGLYRADVCALTFS 265
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 26.5 bits (58), Expect = 1.3
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 83 KVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNGD 129
V + AR A + F R I ++ I + G
Sbjct: 138 TVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGA 184
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 26.1 bits (57), Expect = 1.5
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 83 KVMVHPNRVMASNAE---TARNAFLIDPNMLEFLWLR 116
++ V P ++ + E TA +DPN L F L
Sbjct: 5 QLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLV 41
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
69002]}
Length = 183
Score = 25.1 bits (54), Expect = 3.2
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYA 60
MTK A+D D V E +NG H+ + + + + + +
Sbjct: 40 MTKTAEDLIPAHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPATANILGQTANG 99
Query: 61 TSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARN 101
+ T++A + N +M + +RN
Sbjct: 100 VAMNLVATTVLAH-----PHNTIFFPNMNDLMWNKTVVSRN 135
>d1zbma1 c.94.1.1 (A:2-261) Hypothetical protein AF1704
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 260
Score = 24.9 bits (54), Expect = 3.5
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 83 KVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTI--HEDKNIAKNGDANKGVLIGEGA 140
+ + +A L+ +E + + + + G+LI EG
Sbjct: 87 SEISLDGKRIAVPGRYTTANLLL-KLAVEDFEPVEMPFDRIIQAVLDEEVDAGLLIHEGQ 145
Query: 141 LKVRNEKAVGVVADLF 156
+ + V DL+
Sbjct: 146 ITYADYGLK-CVLDLW 160
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a3 [TaxId: 9606]}
Length = 93
Score = 24.8 bits (54), Expect = 4.2
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGD---NFRHIIVSPYVKSEFVRFMSDSNVASF 57
+ K+ T F + ++ M N D +F E+VR ++ +
Sbjct: 37 LQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFV----------EYVRSLACLCLYCH 86
Query: 58 RY 59
Y
Sbjct: 87 EY 88
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 24.4 bits (53), Expect = 5.3
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 32 FRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHPNRV 91
+R I Y + E++ + S +A AD Y ++ ++
Sbjct: 6 YRDIDKPAYTRREYITGIPGSKIAQH--------KMGRKQKDADDYPVQISLIVEETVQL 57
Query: 92 MASNAETARNA 102
+ E +R +
Sbjct: 58 RHGSLEASRLS 68
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens),
s100a4 [TaxId: 9606]}
Length = 93
Score = 24.1 bits (52), Expect = 6.1
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGD---NFRHIIVSPYVKSEFVRFMSDSNVASF 57
+T++ + + ++M N D +F E+ F+S +
Sbjct: 37 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDF----------QEYCVFLSCIAMMCN 86
Query: 58 RY 59
+
Sbjct: 87 EF 88
>d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 111
Score = 23.9 bits (52), Expect = 6.4
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 11/57 (19%)
Query: 3 KKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRY 59
++K ++ L + HI S +V ++ D A R
Sbjct: 45 LESKKISKTQAVTSNL------KREFKTKDVHIGPSDHVG-----WLDDRKWAYVRL 90
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 23.6 bits (50), Expect = 8.8
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 11 RTFSKQILDEVMQEGYQNGDNFRHI-IVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNT 69
R Q D++ E D F ++ + Y + V DS + Y K + T
Sbjct: 53 RILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHV---PDSGATATAYLCGVKGNFQT 109
Query: 70 IVATADIYDRPFGKVMVHPNRVMASNAETARNA 102
I +A + + S A+ A
Sbjct: 110 IGLSAAARFNQCNTTRGNE---VISVMNRAKKA 139
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3,
Nqo3, C-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 82
Score = 23.6 bits (51), Expect = 9.5
Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 2/31 (6%)
Query: 58 RYATSGKSHNNTIVATADIYDRPFGKVMVHP 88
Y + V A R + HP
Sbjct: 7 FYLRPTMWKAHQAVGKAQEAARAE--LWAHP 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 567,317
Number of extensions: 24211
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 21
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)