BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1073_1
         (162 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1073_1 
          Length = 162

 Score =  337 bits (863), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYA 60
           MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYA
Sbjct: 1   MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYA 60

Query: 61  TSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHE 120
           TSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHE
Sbjct: 61  TSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHE 120

Query: 121 DKNIAKNGDANKGVLIGEGALKVRNEKAVGVVADLFGLSKTT 162
           DKNIAKNGDANKGVLIGEGALKVRNEKAVGVVADLFGLSKTT
Sbjct: 121 DKNIAKNGDANKGVLIGEGALKVRNEKAVGVVADLFGLSKTT 162


>537021.9.peg.1087_1 
          Length = 48

 Score = 52.8 bits (125), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 24/25 (96%)

Query: 83  KVMVHPNRVMASNAETARNAFLIDP 107
           KVMVHPNRVMASNAETARNAFLI P
Sbjct: 4   KVMVHPNRVMASNAETARNAFLIHP 28


>gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 355

 Score = 25.0 bits (53), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 31  NFRHIIVSPYVKS--EFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVM--- 85
           +F  I V P V    E     SD  + ++R + +G  H NT  +   I   P G V+   
Sbjct: 205 SFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQ 264

Query: 86  ----VHPNRVMASNAETAR 100
                H N+  A N   A+
Sbjct: 265 QERSQHKNKAQAWNMLRAK 283


>gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 339

 Score = 23.5 bits (49), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 1  MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVS 38
          M  +AKD  Q   S  + +E + +  Q+G +F  +I S
Sbjct: 51 MLFRAKDAMQYISSILLYEETLYQNAQDGTSFVDLISS 88


>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 404

 Score = 23.5 bits (49), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 71  VATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEF 112
           + +  +Y+ P G +++H +R + S +  + +A L D  M  +
Sbjct: 271 IKSRGVYETPGGTILLHAHRAIESISLDSGSAHLKDDLMSRY 312


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,945
Number of Sequences: 1233
Number of extensions: 3805
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)