Query 537021.9.peg.1074_1
Match_columns 169
No_of_seqs 120 out of 249
Neff 5.6
Searched_HMMs 13730
Date Wed May 25 07:42:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1074.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a5 a.24.9.1 (A:489-646) V 41.0 10 0.00074 15.9 3.5 27 105-131 80-106 (158)
2 d1st6a4 a.24.9.1 (A:372-488) V 27.0 17 0.0013 14.6 3.8 28 105-132 87-114 (117)
3 d1smya2 d.181.1.1 (A:50-172) R 25.2 11 0.00082 15.7 1.0 17 13-29 19-35 (123)
4 d1bdfa2 d.181.1.1 (A:53-178) R 24.4 12 0.00087 15.5 1.0 16 13-28 19-34 (126)
5 d1st6a3 a.24.9.1 (A:253-371) V 16.0 30 0.0022 13.2 3.5 23 105-127 96-118 (119)
6 d1a9xa4 c.30.1.1 (A:556-676) C 12.7 20 0.0014 14.3 -0.1 38 101-138 15-53 (121)
7 d2ft1a1 d.183.1.1 (A:104-383) 11.7 40 0.0029 12.5 8.0 110 18-133 16-125 (280)
8 d1vi2a1 c.2.1.7 (A:107-288) Pu 10.2 13 0.00098 15.2 -1.6 22 94-115 133-159 (182)
9 d1kr4a_ d.58.5.2 (A:) Hypothet 8.3 7.9 0.00057 16.6 -3.4 42 14-55 66-107 (110)
10 d1naqa_ d.58.5.2 (A:) Cut A1 { 8.2 8 0.00058 16.6 -3.4 42 14-55 64-105 (106)
No 1
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=41.04 E-value=10 Score=15.95 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 012799999999999999999997348
Q 537021.9.peg.1 105 YILKYKEQKLKKALEIRKDVEFALVSS 131 (169)
Q Consensus 105 ~~~E~a~q~~k~~kElKrDiE~~~~~~ 131 (169)
.+..+|.|+..++++|++.|..++++-
T Consensus 80 eA~~lA~qi~~kL~dL~~~v~~Avv~~ 106 (158)
T d1st6a5 80 QARAIAAQLQDSLKDLKARMQEAMTQE 106 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 2
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.02 E-value=17 Score=14.58 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0127999999999999999999973487
Q 537021.9.peg.1 105 YILKYKEQKLKKALEIRKDVEFALVSSQ 132 (169)
Q Consensus 105 ~~~E~a~q~~k~~kElKrDiE~~~~~~~ 132 (169)
.+..+|.|+..++.+|+-.|..++.+..
T Consensus 87 eA~~lA~qi~~kL~~L~~~v~~Av~n~~ 114 (117)
T d1st6a4 87 EARALAKQIATSLQNLQSKTNRAVANTR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999987467
No 3
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=25.23 E-value=11 Score=15.68 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHCCC
Q ss_conf 23342017779875485
Q 537021.9.peg.1 13 STTNKESLSDVVSRITP 29 (169)
Q Consensus 13 ~~g~rEdl~dvI~~isP 29 (169)
..|.|||+.|+|-|+--
T Consensus 19 i~GV~EDV~eIiLNLK~ 35 (123)
T d1smya2 19 IPGVKEDVVEIILNLKE 35 (123)
T ss_dssp CTTBSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 78814669999986330
No 4
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=24.35 E-value=12 Score=15.53 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHCC
Q ss_conf 2334201777987548
Q 537021.9.peg.1 13 STTNKESLSDVVSRIT 28 (169)
Q Consensus 13 ~~g~rEdl~dvI~~is 28 (169)
.-|.|||+.|+|-|+-
T Consensus 19 i~GV~EDV~~IiLNLK 34 (126)
T d1bdfa2 19 KEGVQEDILEILLNLK 34 (126)
T ss_dssp CTTBSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7881466999997343
No 5
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.01 E-value=30 Score=13.20 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01279999999999999999999
Q 537021.9.peg.1 105 YILKYKEQKLKKALEIRKDVEFA 127 (169)
Q Consensus 105 ~~~E~a~q~~k~~kElKrDiE~~ 127 (169)
.+..+|.|+..++.+|+..|..+
T Consensus 96 eA~~lA~qi~~kL~~L~~~v~~A 118 (119)
T d1st6a3 96 MAMQKAQQVSQGLDLLTAKVENA 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998703
No 6
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=12.70 E-value=20 Score=14.26 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCC
Q ss_conf 4337012799999999999999-9999973487777763
Q 537021.9.peg.1 101 DDVGYILKYKEQKLKKALEIRK-DVEFALVSSQGSEKTS 138 (169)
Q Consensus 101 ~~aG~~~E~a~q~~k~~kElKr-DiE~~~~~~~a~~at~ 138 (169)
..-|.+.|+.|-...+.++||. .+|..++++++.+-++
T Consensus 15 ~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVst 53 (121)
T d1a9xa4 15 NRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVST 53 (121)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHC
T ss_conf 711663002088999999999669847997167665306
No 7
>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]}
Probab=11.75 E-value=40 Score=12.48 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=61.1
Q ss_pred CCHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHH
Q ss_conf 01777987548541732342077521453688888501565554434675434100122235575579987415661458
Q 537021.9.peg.1 18 ESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGTQ 97 (169)
Q Consensus 18 Edl~dvI~~isP~~TPf~S~i~~~~a~~t~~eW~~d~L~~~~~n~~~EG~d~~~~~~~~~~r~~NytQI~~k~~~VSgT~ 97 (169)
+.+..+|.... ...|+...+.....++...+|....-.....--+.||+..+....+-.. +.--...+.-.+.||.
T Consensus 16 ~~~~~ii~~~~-~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~a~~v~Eg~~~~~~~~~f~~-v~~~~~k~~~~~~iS~-- 91 (280)
T d2ft1a1 16 MQIPGIIMPGL-RRLTIRDLLAQGRTSSNALEYVREEVFTNNADVVAEKALKPESDITFSK-QTANVKTIAHWVQASR-- 91 (280)
T ss_dssp EECCSCBCCCC-CCCCSGGGSEEEECCSSEEEEEEEEEEECCCEEECTTCCCCBCEEEEEE-EEEECEEEEEEEEEEH--
T ss_pred EEHHHHHHHHC-CCHHHHHHHCEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCC-CCCCCEEEEEEECCCH--
T ss_conf 72256787530-3144786605377279978988885476866896268877756544343-4344589999953699--
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 865433701279999999999999999999734877
Q 537021.9.peg.1 98 EAVDDVGYILKYKEQKLKKALEIRKDVEFALVSSQG 133 (169)
Q Consensus 98 ~av~~aG~~~E~a~q~~k~~kElKrDiE~~~~~~~a 133 (169)
+..+... +-..|-..+-.+.+.+.+|.+++.+..
T Consensus 92 ell~ds~--~~~~~v~~~l~~~~a~~~d~a~l~G~g 125 (280)
T d2ft1a1 92 QVMDDAP--MLQSYINNRLMYGLALKEEGQLLNGDG 125 (280)
T ss_dssp HHHHHST--THHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9984117--899999999999999986566530556
No 8
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
Probab=10.24 E-value=13 Score=15.25 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=8.8
Q ss_pred CCHHHHHHHCCH-----HHHHHHHHHH
Q ss_conf 145886543370-----1279999999
Q 537021.9.peg.1 94 SGTQEAVDDVGY-----ILKYKEQKLK 115 (169)
Q Consensus 94 SgT~~av~~aG~-----~~E~a~q~~k 115 (169)
+...+.....|. -+.+-||-..
T Consensus 133 T~ll~~a~~~g~~~i~Gl~Mli~Qa~~ 159 (182)
T d1vi2a1 133 TKLLQQAQQAGCKTIDGYGMLLWQGAE 159 (182)
T ss_dssp CHHHHHHHTTTCEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCEEECCHHHHHHHHHH
T ss_conf 299999998849485549999999999
No 9
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga maritima [TaxId: 2336]}
Probab=8.30 E-value=7.9 Score=16.60 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEEEEEC
Q ss_conf 334201777987548541732342077521453688888501
Q 537021.9.peg.1 14 TTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDL 55 (169)
Q Consensus 14 ~g~rEdl~dvI~~isP~~TPf~S~i~~~~a~~t~~eW~~d~L 55 (169)
....+.|.+.|-.+-|.|+|-.-.+.-......|.+|..+.+
T Consensus 66 ~~~~~~l~~~I~~~HpYevPeIi~~~~~~~~~~Y~~Wv~~~~ 107 (110)
T d1kr4a_ 66 EEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRESV 107 (110)
T ss_dssp GGGHHHHHHHHHHHCSSSSCCEEEECCCCEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 989999999999509997988999976468978999999864
No 10
>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]}
Probab=8.21 E-value=8 Score=16.55 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEEEEEC
Q ss_conf 334201777987548541732342077521453688888501
Q 537021.9.peg.1 14 TTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDL 55 (169)
Q Consensus 14 ~g~rEdl~dvI~~isP~~TPf~S~i~~~~a~~t~~eW~~d~L 55 (169)
.....+|.+.|-..-|.|+|-.-.+.-...+..|.+|..+.+
T Consensus 64 ~~~~~~l~~~i~~~HpYevPeIi~~~~~~~~~~Y~~Wv~~~~ 105 (106)
T d1naqa_ 64 VSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 105 (106)
T ss_dssp GGGHHHHHHHHHHHSTTSCCCEEEEECCBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 989999999998509987978999984127978999999863
Done!