RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.1074_1
(169 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 35.3 bits (81), Expect = 0.006
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 44/136 (32%)
Query: 19 SLSDVVSRITPEDTPIYSMIK----KGTTHSIH-PEWVVDDLA---------SPGPNA-- 62
SL+DV+S I S+++ +G T + P D+L +PG A
Sbjct: 1772 SLADVMS--------IESLVEVVFYRGMTMQVAVPR---DELGRSNYGMIAINPGRVAAS 1820
Query: 63 -QLEGDEYSFKTINTPERMG------NYTQIMRKSWILSGTQEAVDDVGYILKY-KEQK- 113
E +Y + + +R G NY + + ++ +G A+D V +L + K QK
Sbjct: 1821 FSQEALQYVVERVG--KRTGWLVEIVNY-NVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 114 ----LKKALEIRKDVE 125
L+K+L + ++VE
Sbjct: 1878 DIIELQKSLSL-EEVE 1892
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.4 bits (67), Expect = 0.25
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 21/44 (47%)
Query: 110 KEQKLKK---ALEIRKDVEFALVSSQGSEKTSPRKMAALSSWIK 150
++Q LKK +L++ +A + ++P AL+ IK
Sbjct: 18 EKQALKKLQASLKL-----YA-------DDSAP----ALA--IK 43
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint
center for structural genomics, JCSG; 2.28A
{Desulfovibrio desulfuricans subsp}
Length = 496
Score = 27.6 bits (61), Expect = 1.3
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 21 SDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPERM 80
+ V + ++ + + AS A ++GD I +
Sbjct: 251 MEFVEVRQEDFEEVF------ASGHMASGAGSASGASVSGYAVIKGDT----VIGENVLV 300
Query: 81 GNYTQIMRKSWILSGT 96
+ +W+ G+
Sbjct: 301 SQRAYL-DNAWMGKGS 315
>2wmm_A Chromosome partition protein MUKB; cell division, DNA
condensation, nucleotide-binding, cell cycle, coiled
coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia
coli}
Length = 162
Score = 27.9 bits (62), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 18 ESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEG 66
LS++ ++ ED P +S + + H+I VV DL+ LEG
Sbjct: 42 VLLSEIYDDVSLEDAPYFSALYGPSRHAI----VVPDLS--QVTEHLEG 84
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing
factor, phosphoprotein, polymorphism, proto-oncogene,
structural genomics; 1.48A {Homo sapiens}
Length = 112
Score = 26.9 bits (59), Expect = 2.3
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 27 ITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPE 78
+ + + EW + +A+ Y ++ NTPE
Sbjct: 64 VEENIVKDLPFEPSKKLYVVKQEWFWGSIQM---DARAGETMYLYEKANTPE 112
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 109
Score = 26.6 bits (58), Expect = 2.9
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 23 VVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPE 78
+ + EW + +A+ Y ++ NTPE
Sbjct: 51 THLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQM---DARAGETMYLYEKANTPE 103
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.9 bits (56), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 91 WILSGTQEAVDDVGYILKYKEQKLKKALEIRKDVEFALVSSQGSEK 136
W+ S T+E VDD KY+ L+ + IR +E L + EK
Sbjct: 876 WVDSKTKEPVDDKDVKAKYETSILEHS-GIRL-IEPELFNGYNPEK 919
>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin
digestion, mechanism; 1.90A {Proteus vulgaris} SCOP:
a.102.3.2 b.18.1.17 b.24.1.1 b.30.5.2
Length = 1021
Score = 25.1 bits (54), Expect = 8.2
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 12 SSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPE--WVVDDLASPGPNAQLEGDEY 69
S T ES + ITP P G IH +V N + E
Sbjct: 598 SDKTQNESTAIFGETITPASLPQGFYAFNGGAFGIHRWQDKMVT---LKAYNTNVWSSE- 653
Query: 70 SFKTINTPERMGNY 83
N R G Y
Sbjct: 654 ---IYNKDNRYGRY 664
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
3fsb_A* 3fsc_A*
Length = 273
Score = 24.8 bits (53), Expect = 8.8
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 45 SIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGT 96
+I ++ + G N +E I+ + + I + S+I + +
Sbjct: 4 NISKSAIIKEGVIIGENVTIE----DNVYIDYGCIIRDNVHIKKGSFIGARS 51
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains,
type I KH domains, fragIle X mental retardation protein,
RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Length = 144
Score = 24.8 bits (53), Expect = 9.4
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 74 INTPERMGNYTQIMRKSWILSGTQEAVDDVGYILKYKEQKLK 115
I + ++ GT++++ + +L Y LK
Sbjct: 103 IEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYLK 144
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.310 0.126 0.351
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,394,224
Number of extensions: 61176
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 15
Length of query: 169
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 83
Effective length of database: 3,608,246
Effective search space: 299484418
Effective search space used: 299484418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.7 bits)