RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.1074_1 (169 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 35.3 bits (81), Expect = 0.006 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 44/136 (32%) Query: 19 SLSDVVSRITPEDTPIYSMIK----KGTTHSIH-PEWVVDDLA---------SPGPNA-- 62 SL+DV+S I S+++ +G T + P D+L +PG A Sbjct: 1772 SLADVMS--------IESLVEVVFYRGMTMQVAVPR---DELGRSNYGMIAINPGRVAAS 1820 Query: 63 -QLEGDEYSFKTINTPERMG------NYTQIMRKSWILSGTQEAVDDVGYILKY-KEQK- 113 E +Y + + +R G NY + + ++ +G A+D V +L + K QK Sbjct: 1821 FSQEALQYVVERVG--KRTGWLVEIVNY-NVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877 Query: 114 ----LKKALEIRKDVE 125 L+K+L + ++VE Sbjct: 1878 DIIELQKSLSL-EEVE 1892 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.4 bits (67), Expect = 0.25 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 21/44 (47%) Query: 110 KEQKLKK---ALEIRKDVEFALVSSQGSEKTSPRKMAALSSWIK 150 ++Q LKK +L++ +A + ++P AL+ IK Sbjct: 18 EKQALKKLQASLKL-----YA-------DDSAP----ALA--IK 43 >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint center for structural genomics, JCSG; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496 Score = 27.6 bits (61), Expect = 1.3 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 11/76 (14%) Query: 21 SDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPERM 80 + V + ++ + + AS A ++GD I + Sbjct: 251 MEFVEVRQEDFEEVF------ASGHMASGAGSASGASVSGYAVIKGDT----VIGENVLV 300 Query: 81 GNYTQIMRKSWILSGT 96 + +W+ G+ Sbjct: 301 SQRAYL-DNAWMGKGS 315 >2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli} Length = 162 Score = 27.9 bits (62), Expect = 1.4 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Query: 18 ESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEG 66 LS++ ++ ED P +S + + H+I VV DL+ LEG Sbjct: 42 VLLSEIYDDVSLEDAPYFSALYGPSRHAI----VVPDLS--QVTEHLEG 84 >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Score = 26.9 bits (59), Expect = 2.3 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 3/52 (5%) Query: 27 ITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPE 78 + + + EW + +A+ Y ++ NTPE Sbjct: 64 VEENIVKDLPFEPSKKLYVVKQEWFWGSIQM---DARAGETMYLYEKANTPE 112 >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Score = 26.6 bits (58), Expect = 2.9 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 3/56 (5%) Query: 23 VVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPE 78 + + EW + +A+ Y ++ NTPE Sbjct: 51 THLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQM---DARAGETMYLYEKANTPE 103 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 25.9 bits (56), Expect = 4.9 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 91 WILSGTQEAVDDVGYILKYKEQKLKKALEIRKDVEFALVSSQGSEK 136 W+ S T+E VDD KY+ L+ + IR +E L + EK Sbjct: 876 WVDSKTKEPVDDKDVKAKYETSILEHS-GIRL-IEPELFNGYNPEK 919 >1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin digestion, mechanism; 1.90A {Proteus vulgaris} SCOP: a.102.3.2 b.18.1.17 b.24.1.1 b.30.5.2 Length = 1021 Score = 25.1 bits (54), Expect = 8.2 Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 9/74 (12%) Query: 12 SSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPE--WVVDDLASPGPNAQLEGDEY 69 S T ES + ITP P G IH +V N + E Sbjct: 598 SDKTQNESTAIFGETITPASLPQGFYAFNGGAFGIHRWQDKMVT---LKAYNTNVWSSE- 653 Query: 70 SFKTINTPERMGNY 83 N R G Y Sbjct: 654 ---IYNKDNRYGRY 664 >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 Score = 24.8 bits (53), Expect = 8.8 Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 45 SIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGT 96 +I ++ + G N +E I+ + + I + S+I + + Sbjct: 4 NISKSAIIKEGVIIGENVTIE----DNVYIDYGCIIRDNVHIKKGSFIGARS 51 >2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144 Score = 24.8 bits (53), Expect = 9.4 Identities = 7/42 (16%), Positives = 16/42 (38%) Query: 74 INTPERMGNYTQIMRKSWILSGTQEAVDDVGYILKYKEQKLK 115 I + ++ GT++++ + +L Y LK Sbjct: 103 IEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYLK 144 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.310 0.126 0.351 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,394,224 Number of extensions: 61176 Number of successful extensions: 138 Number of sequences better than 10.0: 1 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 15 Length of query: 169 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 83 Effective length of database: 3,608,246 Effective search space: 299484418 Effective search space used: 299484418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 53 (24.7 bits)