BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.1074_1
(169 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.1074_1
Length = 169
Score = 347 bits (889), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MTIVNNTFITSSSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGP 60
MTIVNNTFITSSSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGP
Sbjct: 1 MTIVNNTFITSSSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGP 60
Query: 61 NAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGTQEAVDDVGYILKYKEQKLKKALEI 120
NAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGTQEAVDDVGYILKYKEQKLKKALEI
Sbjct: 61 NAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGTQEAVDDVGYILKYKEQKLKKALEI 120
Query: 121 RKDVEFALVSSQGSEKTSPRKMAALSSWIKKNASRGTGGVLEDMILSLA 169
RKDVEFALVSSQGSEKTSPRKMAALSSWIKKNASRGTGGVLEDMILSLA
Sbjct: 121 RKDVEFALVSSQGSEKTSPRKMAALSSWIKKNASRGTGGVLEDMILSLA 169
>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 427
Score = 26.9 bits (58), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 1 MTIVNNTFITSS----STTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLA 56
+T+ + IT+S N ++L DV+ ++ P D P Y ++ + T PE + D
Sbjct: 294 LTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISDFC 352
Query: 57 SP---GPNAQLEGDEYSF 71
+P P+A + D F
Sbjct: 353 APLGITPSAIIPFDGAVF 370
>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 452
Score = 23.5 bits (49), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 105 YILKYKEQKLKKALEIRKDVEFALVSSQGSEKTSPRKMAALS-SWIK 150
Y L + K+K ++ KD++ ++ + G+ T K+A S +W+K
Sbjct: 187 YGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLK 233
>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1386
Score = 23.5 bits (49), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 4 VNNTFITSSSTTNKESLSDVVSRITPEDTPIYSM 37
+ NT +T + K++L D+ + P D +S+
Sbjct: 358 IRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSV 391
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 23.1 bits (48), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 60 PNAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGTQEAVDDVGYILK 108
P L GD+ I +++GN ++ WI S Q + +D+ ++L+
Sbjct: 361 PLFPLTGDDVVKYGIPPGKKVGNILVHCKQEWINSSFQLSQEDLHHLLR 409
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 22.7 bits (47), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 51 VVDDLASPGPNAQLEGD 67
V+D +A+ P A++EGD
Sbjct: 150 VIDSVAALTPRAEIEGD 166
>gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 217
Score = 21.6 bits (44), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 43 THSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPE 78
+H I +W + ASP A+++G TIN P+
Sbjct: 57 SHIIPEKWKLRTPASPHLAAEIDGVIIDPATINPPD 92
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 21.6 bits (44), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 10 TSSSTTNKESLSDVVSRITPEDTP 33
T+ T+ SLSD S+I E TP
Sbjct: 324 TTIKTSQFSSLSDQTSKINSEQTP 347
>gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 261
Score = 21.2 bits (43), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 12 SSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSI 46
S+ S+ ++ + P++ Y +IKK T H++
Sbjct: 217 SNLCTPHSIIPTLATVHPQELIQYPLIKKNTWHAL 251
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.310 0.126 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,161
Number of Sequences: 1233
Number of extensions: 3885
Number of successful extensions: 11
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 169
length of database: 328,796
effective HSP length: 68
effective length of query: 101
effective length of database: 244,952
effective search space: 24740152
effective search space used: 24740152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 35 (18.1 bits)