Query 537021.9.peg.1078_1 Match_columns 62 No_of_seqs 36 out of 38 Neff 2.2 Searched_HMMs 23785 Date Wed May 25 06:28:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1078.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2wbn_A G2P, terminase large su 97.2 7.8E-05 3.3E-09 47.0 1.1 37 5-41 158-201 (212) 2 1b33_N Phycobilisome 7.8 KD li 35.5 20 0.00086 17.3 2.6 23 6-28 32-54 (67) 3 2r2i_A Guanylyl cyclase-activa 14.0 78 0.0033 14.1 2.1 23 3-26 12-34 (198) 4 1jfm_A RAE-1 beta, retinoic ac 13.0 80 0.0034 14.0 1.9 16 5-20 158-173 (174) 5 1bgk_A BGK; neurotoxin, potass 9.0 20 0.00086 17.3 -2.3 15 7-21 2-16 (37) 6 1kcg_C ULBP3 protein; protein- 8.8 1.2E+02 0.0049 13.1 2.1 15 6-20 161-175 (178) 7 2bng_A MB2760; epoxide hydrola 7.9 1.2E+02 0.0051 13.0 1.3 15 20-34 113-129 (149) 8 3dbo_B Uncharacterized protein 7.8 1.3E+02 0.0055 12.9 2.8 32 6-37 92-123 (150) 9 1zbt_A RF-1, peptide chain rel 7.3 1.4E+02 0.0058 12.7 2.0 15 5-19 136-151 (371) 10 3d5a_X RF1, peptide chain rele 6.9 1.4E+02 0.0061 12.6 2.0 15 5-19 118-133 (354) No 1 >2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A Probab=97.16 E-value=7.8e-05 Score=47.00 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHC-------CCEEECHHHHHHHHHHHHHH Q ss_conf 52899999999875215-------81601000167899999999 Q 537021.9.peg.1 5 LECQEWLDEFHQYHRCE-------GRVIKEKDDLICASRYALMM 41 (62) Q Consensus 5 ~~C~~Wf~Efr~YHRkd-------GKIVk~~DDlmsAtRYA~m~ 41 (62) -.|.++.+||..|+.+. .+.++..|+.|+|.|||++. T Consensus 158 ~~C~~li~El~~Y~~d~dk~g~~~~~p~d~~dH~~DAlRYai~~ 201 (212) T 2wbn_A 158 LRTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFER 201 (212) T ss_dssp TTCHHHHHHHHHCCEEECTTCCEEEEECSSSCHHHHHHHHHTGG T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 75899999997287156889986688878876187888860303 No 2 >1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1 Probab=35.50 E-value=20 Score=17.29 Aligned_cols=23 Identities=17% Similarity=0.590 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHHHHCCCEEECH Q ss_conf 28999999998752158160100 Q 537021.9.peg.1 6 ECQEWLDEFHQYHRCEGRVIKEK 28 (62) Q Consensus 6 ~C~~Wf~Efr~YHRkdGKIVk~~ 28 (62) .-..||.|-..-..--|||+|.. T Consensus 32 py~nWf~EQQrIqK~GGkI~KVe 54 (67) T 1b33_N 32 PYENWFREQQRIQKMGGKIVKVE 54 (67) T ss_dssp EHHHHHHHHHHHHHTTCEEEEEE T ss_pred CHHHHHHHHHHHHHHCCEEEEEE T ss_conf 55888889999998188089999 No 3 >2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Probab=13.99 E-value=78 Score=14.10 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 345289999999987521581601 Q 537021.9.peg.1 3 SILECQEWLDEFHQYHRCEGRVIK 26 (62) Q Consensus 3 ~~~~C~~Wf~Efr~YHRkdGKIVk 26 (62) ++.||..||..|.-=. .+|+|-+ T Consensus 12 ~~~e~~~~y~~F~~~~-~~G~i~~ 34 (198) T 2r2i_A 12 SATECHQWYKKFMTEC-PSGQLTL 34 (198) T ss_dssp HTSCHHHHHHHHHHHC-TTSEECH T ss_pred CHHHHHHHHHHHCCCC-CCCEEEH T ss_conf 9999999999865779-4994219 No 4 >1jfm_A RAE-1 beta, retinoic acid early transcript beta; murine NK cell ligand, NKG2D, MHC-I platform, immune system; 2.85A {Mus musculus} SCOP: d.19.1.1 PDB: 1jsk_C Probab=13.04 E-value=80 Score=14.04 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5289999999987521 Q 537021.9.peg.1 5 LECQEWLDEFHQYHRC 20 (62) Q Consensus 5 ~~C~~Wf~Efr~YHRk 20 (62) -+|.+|+.+|-.|.++ T Consensus 158 ~~C~~wL~kyL~~gke 173 (174) T 1jfm_A 158 HECSQKMDEFLKQSKE 173 (174) T ss_dssp HHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCCC T ss_conf 7759999999861678 No 5 >1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma granulifera} SCOP: g.19.1.1 Probab=8.97 E-value=20 Score=17.28 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 899999999875215 Q 537021.9.peg.1 7 CQEWLDEFHQYHRCE 21 (62) Q Consensus 7 C~~Wf~Efr~YHRkd 21 (62) |.|||.|-.--|-|. T Consensus 2 crdwfketacrhaks 16 (37) T 1bgk_A 2 CRDWFKETACRHAKS 16 (37) T ss_dssp CCCCSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 188999999887776 No 6 >1kcg_C ULBP3 protein; protein-protein complex, C-type lectin-like receptor, MHC class I-like molecule, immune system; HET: GSH; 2.60A {Homo sapiens} SCOP: d.19.1.1 Probab=8.83 E-value=1.2e+02 Score=13.11 Aligned_cols=15 Identities=27% Similarity=0.864 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 289999999987521 Q 537021.9.peg.1 6 ECQEWLDEFHQYHRC 20 (62) Q Consensus 6 ~C~~Wf~Efr~YHRk 20 (62) +|.+|++.|-.|.++ T Consensus 161 ~Ci~wL~~yL~~gk~ 175 (178) T 1kcg_C 161 DCKSWLRDFLMHRKK 175 (178) T ss_dssp HHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 308999999986287 No 7 >2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8 Probab=7.87 E-value=1.2e+02 Score=13.05 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=10.8 Q ss_pred HCCCEEECHH--HHHHH Q ss_conf 1581601000--16789 Q 537021.9.peg.1 20 CEGRVIKEKD--DLICA 34 (62) Q Consensus 20 kdGKIVk~~D--DlmsA 34 (62) +||||+..+| |.++. T Consensus 113 ~dGkI~~~r~Y~D~~~~ 129 (149) T 2bng_A 113 DDGRITLWRDYFDVYDM 129 (149) T ss_dssp ETTEEEEEEEECCHHHH T ss_pred CCCEEEEEEEECCHHHH T ss_conf 69979999995188999 No 8 >3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis H37RV} Probab=7.85 E-value=1.3e+02 Score=12.87 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHHHCCCEEECHHHHHHHHHH Q ss_conf 28999999998752158160100016789999 Q 537021.9.peg.1 6 ECQEWLDEFHQYHRCEGRVIKEKDDLICASRY 37 (62) Q Consensus 6 ~C~~Wf~Efr~YHRkdGKIVk~~DDlmsAtRY 37 (62) +....+.+.+...++.|+-+...|-++.||-. T Consensus 92 ~~A~~a~~l~~~~~~~g~~i~~~D~lIAAtAl 123 (150) T 3dbo_B 92 DAARMWARLRIHLAESGRRVRINDLWIAAVAA 123 (150) T ss_dssp HHHHHHHHHHHHHHHHTCCCBHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 99999999999998413677865199999999 No 9 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Probab=7.26 E-value=1.4e+02 Score=12.71 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=8.8 Q ss_pred HHHHHHHHH-HHHHHH Q ss_conf 528999999-998752 Q 537021.9.peg.1 5 LECQEWLDE-FHQYHR 19 (62) Q Consensus 5 ~~C~~Wf~E-fr~YHR 19 (62) .||++|-++ ||||-| T Consensus 136 ~EA~dwA~~L~RMY~r 151 (371) T 1zbt_A 136 DEAALFAGDLLNMYQK 151 (371) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 3799999999999999 No 10 >3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Probab=6.91 E-value=1.4e+02 Score=12.61 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=9.4 Q ss_pred HHHHHHHHH-HHHHHH Q ss_conf 528999999-998752 Q 537021.9.peg.1 5 LECQEWLDE-FHQYHR 19 (62) Q Consensus 5 ~~C~~Wf~E-fr~YHR 19 (62) .||++|-++ ||||-| T Consensus 118 ~EA~dwA~~L~RMY~r 133 (354) T 3d5a_X 118 EEAALFARDLFNMYLR 133 (354) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 2499999999999999 Done!