Query         537021.9.peg.1078_1
Match_columns 62
No_of_seqs    36 out of 38
Neff          2.2 
Searched_HMMs 23785
Date          Wed May 25 06:28:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1078.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2wbn_A G2P, terminase large su  97.2 7.8E-05 3.3E-09   47.0   1.1   37    5-41    158-201 (212)
  2 1b33_N Phycobilisome 7.8 KD li  35.5      20 0.00086   17.3   2.6   23    6-28     32-54  (67)
  3 2r2i_A Guanylyl cyclase-activa  14.0      78  0.0033   14.1   2.1   23    3-26     12-34  (198)
  4 1jfm_A RAE-1 beta, retinoic ac  13.0      80  0.0034   14.0   1.9   16    5-20    158-173 (174)
  5 1bgk_A BGK; neurotoxin, potass   9.0      20 0.00086   17.3  -2.3   15    7-21      2-16  (37)
  6 1kcg_C ULBP3 protein; protein-   8.8 1.2E+02  0.0049   13.1   2.1   15    6-20    161-175 (178)
  7 2bng_A MB2760; epoxide hydrola   7.9 1.2E+02  0.0051   13.0   1.3   15   20-34    113-129 (149)
  8 3dbo_B Uncharacterized protein   7.8 1.3E+02  0.0055   12.9   2.8   32    6-37     92-123 (150)
  9 1zbt_A RF-1, peptide chain rel   7.3 1.4E+02  0.0058   12.7   2.0   15    5-19    136-151 (371)
 10 3d5a_X RF1, peptide chain rele   6.9 1.4E+02  0.0061   12.6   2.0   15    5-19    118-133 (354)

No 1  
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=97.16  E-value=7.8e-05  Score=47.00  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHC-------CCEEECHHHHHHHHHHHHHH
Q ss_conf             52899999999875215-------81601000167899999999
Q 537021.9.peg.1    5 LECQEWLDEFHQYHRCE-------GRVIKEKDDLICASRYALMM   41 (62)
Q Consensus         5 ~~C~~Wf~Efr~YHRkd-------GKIVk~~DDlmsAtRYA~m~   41 (62)
                      -.|.++.+||..|+.+.       .+.++..|+.|+|.|||++.
T Consensus       158 ~~C~~li~El~~Y~~d~dk~g~~~~~p~d~~dH~~DAlRYai~~  201 (212)
T 2wbn_A          158 LRTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFER  201 (212)
T ss_dssp             TTCHHHHHHHHHCCEEECTTCCEEEEECSSSCHHHHHHHHHTGG
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             75899999997287156889986688878876187888860303


No 2  
>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1
Probab=35.50  E-value=20  Score=17.29  Aligned_cols=23  Identities=17%  Similarity=0.590  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHCCCEEECH
Q ss_conf             28999999998752158160100
Q 537021.9.peg.1    6 ECQEWLDEFHQYHRCEGRVIKEK   28 (62)
Q Consensus         6 ~C~~Wf~Efr~YHRkdGKIVk~~   28 (62)
                      .-..||.|-..-..--|||+|..
T Consensus        32 py~nWf~EQQrIqK~GGkI~KVe   54 (67)
T 1b33_N           32 PYENWFREQQRIQKMGGKIVKVE   54 (67)
T ss_dssp             EHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             55888889999998188089999


No 3  
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=13.99  E-value=78  Score=14.10  Aligned_cols=23  Identities=26%  Similarity=0.580  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             345289999999987521581601
Q 537021.9.peg.1    3 SILECQEWLDEFHQYHRCEGRVIK   26 (62)
Q Consensus         3 ~~~~C~~Wf~Efr~YHRkdGKIVk   26 (62)
                      ++.||..||..|.-=. .+|+|-+
T Consensus        12 ~~~e~~~~y~~F~~~~-~~G~i~~   34 (198)
T 2r2i_A           12 SATECHQWYKKFMTEC-PSGQLTL   34 (198)
T ss_dssp             HTSCHHHHHHHHHHHC-TTSEECH
T ss_pred             CHHHHHHHHHHHCCCC-CCCEEEH
T ss_conf             9999999999865779-4994219


No 4  
>1jfm_A RAE-1 beta, retinoic acid early transcript beta; murine NK cell ligand, NKG2D, MHC-I platform, immune system; 2.85A {Mus musculus} SCOP: d.19.1.1 PDB: 1jsk_C
Probab=13.04  E-value=80  Score=14.04  Aligned_cols=16  Identities=31%  Similarity=0.565  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             5289999999987521
Q 537021.9.peg.1    5 LECQEWLDEFHQYHRC   20 (62)
Q Consensus         5 ~~C~~Wf~Efr~YHRk   20 (62)
                      -+|.+|+.+|-.|.++
T Consensus       158 ~~C~~wL~kyL~~gke  173 (174)
T 1jfm_A          158 HECSQKMDEFLKQSKE  173 (174)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             7759999999861678


No 5  
>1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma granulifera} SCOP: g.19.1.1
Probab=8.97  E-value=20  Score=17.28  Aligned_cols=15  Identities=27%  Similarity=0.702  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             899999999875215
Q 537021.9.peg.1    7 CQEWLDEFHQYHRCE   21 (62)
Q Consensus         7 C~~Wf~Efr~YHRkd   21 (62)
                      |.|||.|-.--|-|.
T Consensus         2 crdwfketacrhaks   16 (37)
T 1bgk_A            2 CRDWFKETACRHAKS   16 (37)
T ss_dssp             CCCCSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             188999999887776


No 6  
>1kcg_C ULBP3 protein; protein-protein complex, C-type lectin-like receptor, MHC class I-like molecule, immune system; HET: GSH; 2.60A {Homo sapiens} SCOP: d.19.1.1
Probab=8.83  E-value=1.2e+02  Score=13.11  Aligned_cols=15  Identities=27%  Similarity=0.864  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             289999999987521
Q 537021.9.peg.1    6 ECQEWLDEFHQYHRC   20 (62)
Q Consensus         6 ~C~~Wf~Efr~YHRk   20 (62)
                      +|.+|++.|-.|.++
T Consensus       161 ~Ci~wL~~yL~~gk~  175 (178)
T 1kcg_C          161 DCKSWLRDFLMHRKK  175 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             308999999986287


No 7  
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=7.87  E-value=1.2e+02  Score=13.05  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=10.8

Q ss_pred             HCCCEEECHH--HHHHH
Q ss_conf             1581601000--16789
Q 537021.9.peg.1   20 CEGRVIKEKD--DLICA   34 (62)
Q Consensus        20 kdGKIVk~~D--DlmsA   34 (62)
                      +||||+..+|  |.++.
T Consensus       113 ~dGkI~~~r~Y~D~~~~  129 (149)
T 2bng_A          113 DDGRITLWRDYFDVYDM  129 (149)
T ss_dssp             ETTEEEEEEEECCHHHH
T ss_pred             CCCEEEEEEEECCHHHH
T ss_conf             69979999995188999


No 8  
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis H37RV}
Probab=7.85  E-value=1.3e+02  Score=12.87  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHCCCEEECHHHHHHHHHH
Q ss_conf             28999999998752158160100016789999
Q 537021.9.peg.1    6 ECQEWLDEFHQYHRCEGRVIKEKDDLICASRY   37 (62)
Q Consensus         6 ~C~~Wf~Efr~YHRkdGKIVk~~DDlmsAtRY   37 (62)
                      +....+.+.+...++.|+-+...|-++.||-.
T Consensus        92 ~~A~~a~~l~~~~~~~g~~i~~~D~lIAAtAl  123 (150)
T 3dbo_B           92 DAARMWARLRIHLAESGRRVRINDLWIAAVAA  123 (150)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             99999999999998413677865199999999


No 9  
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=7.26  E-value=1.4e+02  Score=12.71  Aligned_cols=15  Identities=13%  Similarity=0.361  Sum_probs=8.8

Q ss_pred             HHHHHHHHH-HHHHHH
Q ss_conf             528999999-998752
Q 537021.9.peg.1    5 LECQEWLDE-FHQYHR   19 (62)
Q Consensus         5 ~~C~~Wf~E-fr~YHR   19 (62)
                      .||++|-++ ||||-|
T Consensus       136 ~EA~dwA~~L~RMY~r  151 (371)
T 1zbt_A          136 DEAALFAGDLLNMYQK  151 (371)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             3799999999999999


No 10 
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=6.91  E-value=1.4e+02  Score=12.61  Aligned_cols=15  Identities=27%  Similarity=0.465  Sum_probs=9.4

Q ss_pred             HHHHHHHHH-HHHHHH
Q ss_conf             528999999-998752
Q 537021.9.peg.1    5 LECQEWLDE-FHQYHR   19 (62)
Q Consensus         5 ~~C~~Wf~E-fr~YHR   19 (62)
                      .||++|-++ ||||-|
T Consensus       118 ~EA~dwA~~L~RMY~r  133 (354)
T 3d5a_X          118 EEAALFARDLFNMYLR  133 (354)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             2499999999999999


Done!