BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.1078_1
         (62 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|307315429|ref|ZP_07594994.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
 gi|306898808|gb|EFN29464.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
          Length = 477

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           C EW +EF  YHR +GR++KE+DDLI ASRYALMMK  + +  GY++W +T RKV+
Sbjct: 422 CTEWFEEFRLYHRKDGRIVKERDDLISASRYALMMKRHARANNGYANWNFTARKVL 477


>gi|15965769|ref|NP_386122.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
 gi|15075038|emb|CAC46595.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
          Length = 477

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           C EW +EF  YHR +GR++KE+DDLI ASRYALMMK  + +  GY++W +T RKV+
Sbjct: 422 CTEWFEEFRLYHRKDGRIVKERDDLISASRYALMMKRHARANNGYANWNFTARKVL 477


>gi|307318836|ref|ZP_07598268.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
 gi|306895557|gb|EFN26311.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
          Length = 477

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           C EW +EF  YHR +GR++KE+DDLI ASRYALMMK  + +  GY++W +T RKV+
Sbjct: 422 CTEWFEEFRLYHRKDGRIVKERDDLISASRYALMMKRHARANNGYANWNFTARKVL 477


>gi|227821702|ref|YP_002825672.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
 gi|227340701|gb|ACP24919.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
          Length = 416

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           C EW +EF  YHR +G+V+KE+DD+I ASRYALMMK F+  K   ++WK++ RKVI
Sbjct: 361 CGEWFEEFRLYHRKDGKVVKERDDVISASRYALMMKRFARVKADAAAWKFSERKVI 416


>gi|227822449|ref|YP_002826421.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
 gi|227341450|gb|ACP25668.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
          Length = 454

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           C EW +EF  YHR +GR++KE+DDLI ASRYALMMK ++ +  G ++W +T RKV+
Sbjct: 399 CAEWFEEFRLYHRKDGRIVKERDDLISASRYALMMKRYARANNGNANWNFTARKVL 454


>gi|150397042|ref|YP_001327509.1| hypothetical protein Smed_1839 [Sinorhizobium medicae WSM419]
 gi|150028557|gb|ABR60674.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419]
          Length = 477

 Score = 96.6 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           C EW +EF  YHR +GR++KE+DDL+ ASRYALMMK  + +  G ++WK+T RKV+
Sbjct: 422 CTEWFEEFRLYHRKDGRIVKERDDLLAASRYALMMKRHARAIGGNANWKFTARKVL 477


>gi|315122536|ref|YP_004063025.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495938|gb|ADR52537.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 455

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/57 (80%), Positives = 51/57 (89%)

Query: 6   ECQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
           +CQEWLDEF QYHR EGR+IKEK+DLICASRY LMMK FS+S+P  SSWKYTPRKVI
Sbjct: 399 DCQEWLDEFRQYHRREGRIIKEKEDLICASRYGLMMKRFSVSRPVCSSWKYTPRKVI 455


>gi|167041080|gb|ABZ05841.1| hypothetical protein ALOHA_HF400048F7ctg1g8 [uncultured marine
           microorganism HF4000_48F7]
          Length = 504

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 9   EWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSS 53
           +W  EF  YHR +G+V+++ DDL+ A+RYA     ++ +      
Sbjct: 428 QWFQEFRMYHRKDGKVVRKHDDLMSATRYACQSLRYATTANFQPR 472


>gi|71897556|ref|ZP_00679801.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
 gi|71732459|gb|EAO34512.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
          Length = 471

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 8   QEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYS 52
            EW +EF  YHR +GR++K  DDL+ A+RYA+MM+ ++      +
Sbjct: 417 TEWFEEFRLYHREDGRIVKHHDDLLSATRYAMMMRRYAKPPRVAT 461


>gi|273810450|ref|YP_003344921.1| TerL [Xylella phage Xfas53]
 gi|257097825|gb|ACV41131.1| TerL [Xylella phage Xfas53]
          Length = 470

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 8   QEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSIS 47
            EW +EF  YHR +GR++K  DDL+ A+RYA+MM+ ++  
Sbjct: 416 TEWFEEFRLYHREDGRIVKHHDDLLSATRYAMMMRRYAKP 455


>gi|158422463|ref|YP_001523755.1| putative DNA packaging protein GP2 [Azorhizobium caulinodans ORS
           571]
 gi|158329352|dbj|BAF86837.1| putative DNA packaging protein GP2 [Azorhizobium caulinodans ORS
           571]
          Length = 251

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 34/45 (75%)

Query: 8   QEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYS 52
           ++W+ EF  YHR +G+++KE+DDL+ A+RYA+MMK F+  +P   
Sbjct: 189 EDWMSEFRLYHRKDGKIVKERDDLMSATRYAIMMKRFASPEPTGP 233


>gi|148557334|ref|YP_001264916.1| hypothetical protein Swit_4440 [Sphingomonas wittichii RW1]
 gi|148502524|gb|ABQ70778.1| hypothetical protein Swit_4440 [Sphingomonas wittichii RW1]
          Length = 276

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 8   QEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYS 52
           ++W  EF  YHR +G V+K  DD + ASRYA+MMK F+++ P   
Sbjct: 218 EDWFAEFRLYHRKDGSVVKTNDDRLSASRYAMMMKRFAVTAPAAR 262


>gi|71274675|ref|ZP_00650963.1| Protein of unknown function DUF264 [Xylella fastidiosa Dixon]
 gi|71901596|ref|ZP_00683677.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
 gi|170730087|ref|YP_001775520.1| putative DNA packaging protein GP2 [Xylella fastidiosa M12]
 gi|71164407|gb|EAO14121.1| Protein of unknown function DUF264 [Xylella fastidiosa Dixon]
 gi|71728644|gb|EAO30794.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
 gi|167964880|gb|ACA11890.1| putative DNA packaging protein GP2 [Xylella fastidiosa M12]
          Length = 472

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 8   QEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKP 49
            EW +E   YHR  GR+ K  DDL+ A+RYA+MM+ ++    
Sbjct: 418 AEWFEECSLYHRDNGRITKRHDDLLSATRYAMMMRRYAKITN 459


>gi|281599695|gb|ADA72679.1| Gp2-like protein [Shigella flexneri 2002017]
          Length = 441

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 377 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 421


>gi|327251967|gb|EGE63639.1| DNA packaging protein gp2 [Escherichia coli STEC_7v]
 gi|327254495|gb|EGE66117.1| DNA packaging protein gp2 [Escherichia coli STEC_7v]
          Length = 499

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|315299781|gb|EFU59021.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           16-3]
          Length = 499

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|331657716|ref|ZP_08358678.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           coli TA206]
 gi|331055964|gb|EGI27973.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           coli TA206]
          Length = 499

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|293410725|ref|ZP_06654301.1| DNA-packaging protein gp2 [Escherichia coli B354]
 gi|291471193|gb|EFF13677.1| DNA-packaging protein gp2 [Escherichia coli B354]
          Length = 499

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|62178924|ref|YP_215341.1| gp2-like protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62126557|gb|AAX64260.1| gp2-like protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713379|gb|EFZ04950.1| gp2-like protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 499

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|323967108|gb|EGB62533.1| terminase [Escherichia coli M863]
          Length = 499

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|218549377|ref|YP_002383168.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           fergusonii ATCC 35469]
 gi|307311077|ref|ZP_07590721.1| protein of unknown function DUF264 [Escherichia coli W]
 gi|331669066|ref|ZP_08369914.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           coli TA271]
 gi|218356918|emb|CAQ89550.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           fergusonii ATCC 35469]
 gi|306908583|gb|EFN39080.1| protein of unknown function DUF264 [Escherichia coli W]
 gi|312945545|gb|ADR26372.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315061655|gb|ADT75982.1| DNA packaging protein gp2 (terminase large subunit) [Escherichia
           coli W]
 gi|323377763|gb|ADX50031.1| DNA packaging protein gp2 (terminase large subunit) [Escherichia
           coli KO11]
 gi|324117758|gb|EGC11657.1| terminase [Escherichia coli E1167]
 gi|331064260|gb|EGI36171.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
           coli TA271]
          Length = 499

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 479


>gi|281599578|gb|ADA72562.1| putative terminase large subunit [Shigella flexneri 2002017]
          Length = 351

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 287 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 331


>gi|110804280|ref|YP_687800.1| putative terminase large subunit [Shigella flexneri 5 str. 8401]
 gi|110613828|gb|ABF02495.1| putative terminase large subunit [Shigella flexneri 5 str. 8401]
          Length = 354

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 290 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 334


>gi|24111660|ref|NP_706170.1| putative terminase large subunit [Shigella flexneri 2a str. 301]
 gi|24050435|gb|AAN41877.1| putative terminase large subunit [Shigella flexneri 2a str. 301]
 gi|313646707|gb|EFS11166.1| DNA packaging gp2 domain protein [Shigella flexneri 2a str. 2457T]
          Length = 300

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 236 CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 280


>gi|300920006|ref|ZP_07136465.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           115-1]
 gi|300412953|gb|EFJ96263.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           115-1]
          Length = 498

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RY  MM+ F+I    
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKLNDDILSAVRYGYMMRRFAIQMRD 479


>gi|30061789|ref|NP_835960.1| putative terminase large subunit [Shigella flexneri 2a str. 2457T]
 gi|30040031|gb|AAP15765.1| putative terminase large subunit [Shigella flexneri 2a str. 2457T]
          Length = 124

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMKIFSISKPG 50
           C+ + +EF  YHR   G+++K  DD++ A RYA MM+ F+     
Sbjct: 60  CEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRD 104


>gi|27476053|ref|NP_775255.1| terminase [Pseudomonas phage PaP3]
 gi|27414483|gb|AAL85569.1| terminase [Pseudomonas phage PaP3]
          Length = 482

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMM-KIFSISK 48
           C  +L E   YHR +G+++   DD+I A+RYAL+M    +   
Sbjct: 416 CTNFLKEMKMYHRKDGKIVDRNDDMISATRYALLMASRHARPG 458


>gi|167600439|ref|YP_001671939.1| terminase large subunit [Pseudomonas phage LUZ24]
 gi|161168302|emb|CAP45467.1| terminase large subunit [Pseudomonas phage LUZ24]
          Length = 482

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMM-KIFSISK 48
           C  +L E   YHR +G++I   DD+I A+RYAL+M    +   
Sbjct: 416 CTNFLKEMKMYHRKDGKIIDRNDDMISATRYALLMASRHARPG 458


>gi|137993|sp|P16938|VG2_BPLP7 RecName: Full=Protein GP2
 gi|75884|pir||Z2BPL7 gene 2 protein - phage LP-7 (fragment)
 gi|553003|gb|AAA88220.1| packaging glycoprotein [Enterobacteria phage LP7]
          Length = 475

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYALMMK 42
           C+ + +EF  YHR   G+++K  DD++ A+RY  MM+
Sbjct: 431 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGYMMR 467


>gi|89885991|ref|YP_516188.1| phage terminase large subunit [Sodalis phage phiSG1]
 gi|89191726|dbj|BAE80473.1| phage terminase large subunit [Sodalis phage phiSG1]
 gi|125470018|gb|ABN42210.1| gp02 [Sodalis phage phiSG1]
          Length = 475

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 9   EWLDEFHQYHRCE-GRVIKEKDDLICASRYALMMKIFSI 46
           ++ DE++ YHR E  R++K +DD++ A RYA MM+ +++
Sbjct: 415 DFFDEYNFYHRDEKSRIVKMRDDILDAVRYAYMMRRYAV 453


>gi|219681243|ref|YP_002455888.1| Gp2 [Salmonella enterica bacteriophage SE1]
 gi|66473858|gb|AAY46504.1| Gp2 [Salmonella phage SE1]
          Length = 499

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|60476789|gb|AAX21426.1| gp2 [Enterobacteria phage L]
          Length = 499

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|24371583|ref|NP_720326.1| gp2 [Enterobacteria phage ST64T]
 gi|24250810|gb|AAL15523.1| gp2 [Salmonella phage ST64T]
          Length = 517

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 453 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 486


>gi|238912312|ref|ZP_04656149.1| putative terminase large subunit [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|261245593|emb|CBG23388.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 499

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|221328620|ref|YP_002533461.1| Terminase, large subunit [Salmonella phage epsilon34]
 gi|255252684|ref|YP_003090219.1| Terminase, large subunit [Salmonella phage c341]
 gi|193244688|gb|ACF16628.1| Terminase, large subunit [Salmonella phage epsilon34]
 gi|223697657|gb|ACN18281.1| Terminase, large subunit [Salmonella phage g341c]
          Length = 499

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|46358697|ref|YP_006405.1| Gp2 [Enterobacteria phage ST104]
 gi|46357933|dbj|BAD15212.1| Gp2 [Enterobacteria phage ST104]
 gi|312911340|dbj|BAJ35314.1| putative terminase large subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|326622293|gb|EGE28638.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 482

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 418 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 451


>gi|318065950|ref|YP_004123808.1| Gp2 [Salmonella phage ST160]
 gi|289066936|gb|ADC81147.1| Gp2 [Salmonella phage ST160]
          Length = 517

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 453 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 486


>gi|197363441|ref|YP_002143078.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197094918|emb|CAR60455.1| putative terminase large subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|320086843|emb|CBY96615.1| DNA packaging protein gp2 Terminase large subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|198245578|ref|YP_002214540.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197940094|gb|ACH77427.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|168240109|ref|ZP_02665041.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451817|ref|YP_002044341.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194410121|gb|ACF70340.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205340165|gb|EDZ26929.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|51236724|ref|YP_063734.1| terminase large subunit [Enterobacteria phage P22]
 gi|137879|sp|P26745|TERL_BPP22 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein gp2; AltName: Full=Terminase large subunit
 gi|21914414|gb|AAM81379.1|AF527608_1 terminase large subunit [Salmonella phage P22-pbi]
 gi|553005|gb|AAA72959.1| DNA pacaging [Enterobacteria phage P22]
 gi|8439622|gb|AAF75044.1| terminase large subunit [Enterobacteria phage P22]
 gi|28394263|tpg|DAA00977.1| TPA_inf: terminase large subunit [Enterobacteria phage P22]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|157734711|dbj|BAF80717.1| terminase large subunit [Enterobacteria phage P22]
 gi|169658843|dbj|BAG12600.1| terminase large subunit [Enterobacteria phage P22]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|94317806|gb|ABF15069.1| terminase large subunit Gp2 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 278

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 218 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 251


>gi|161504537|ref|YP_001571649.1| hypothetical protein SARI_02650 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865884|gb|ABX22507.1| hypothetical protein SARI_02650 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 499

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 435 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 468


>gi|215304|gb|AAA72960.1| unnamed protein product [Enterobacteria phage P22]
          Length = 101

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7  CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
          C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 37 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 70


>gi|321225021|gb|EFX50082.1| Phage terminase, large subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 267

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 7   CQEWLDEFHQYHRC-EGRVIKEKDDLICASRYAL 39
           C+ + +EF  YHR   G+++K  DD++ A+RY  
Sbjct: 203 CEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGY 236


>gi|167583562|ref|YP_001671752.1| terminase large subunit [Enterobacteria phage phiEco32]
 gi|164375400|gb|ABY52808.1| terminase large subunit [Enterobacteria phage phiEco32]
          Length = 513

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 11  LDEFHQYHRCEGRVIKEKDDLICASRYALMMKIF 44
            +E  +YHR  G++IKE DDL+ A RY+      
Sbjct: 453 FEEKARYHRKVGKIIKEHDDLMDAMRYSACSVTH 486


>gi|264678784|ref|YP_003278691.1| phage DNA packaging protein Gp2 [Comamonas testosteroni CNB-2]
 gi|262209297|gb|ACY33395.1| putative phage DNA packaging protein Gp2 [Comamonas testosteroni
           CNB-2]
          Length = 434

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 9   EWLDEFHQYHRCE-GRVIKEKDDLICASRY 37
           +WL+E+  Y R + G+++K+ D  + A+RY
Sbjct: 218 DWLNEYRIYRRDDKGQIVKKDDHAMDATRY 247


>gi|309804997|ref|ZP_07699054.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165656|gb|EFO67882.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 09V1-c]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 9   EWLDEFHQY--HRCEGRVIKEKDDLICASRYAL 39
            W +E +QY  +   G  +KE DD + A RYA+
Sbjct: 360 NWFNEVYQYIWNEKTGEPVKENDDSMDAMRYAI 392


>gi|309804260|ref|ZP_07698337.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 11V1-d]
 gi|309808639|ref|ZP_07702531.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809485|ref|ZP_07703343.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308163663|gb|EFO65933.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 11V1-d]
 gi|308168113|gb|EFO70239.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170157|gb|EFO72192.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 409

 Score = 37.3 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 9   EWLDEFHQY--HRCEGRVIKEKDDLICASRYAL 39
            W +E +QY  +   G  +KE DD + A RYA+
Sbjct: 360 NWFNEVYQYIWNEKTGEPVKENDDSMDAMRYAI 392


>gi|49146380|ref|YP_025488.1| putative phage DNA packaging protein Gp2 [Caedibacter
           taeniospiralis]
 gi|40458348|gb|AAR87096.1| putative phage DNA packaging protein Gp2 [Caedibacter
           taeniospiralis]
          Length = 474

 Score = 36.9 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 9   EWLDEFHQYHRCE-GRVIKEKDDLICASRYALMM-KIFSIS 47
             L EF  Y R E G V K  D L+   RY +M  +  + S
Sbjct: 416 NTLKEFRMYSRDEKGHVKKGNDHLMDCLRYIVMSGERLAKS 456


>gi|309806821|ref|ZP_07700810.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166795|gb|EFO68985.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           LactinV 03V1-b]
          Length = 409

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 9   EWLDEFHQY--HRCEGRVIKEKDDLICASRYAL 39
            WL+E +QY  +   G  +KE DD + A RYA+
Sbjct: 360 NWLNEVYQYIWNEKTGEPVKENDDSMDAMRYAI 392


>gi|325912773|ref|ZP_08175152.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           UPII 60-B]
 gi|325477904|gb|EGC81037.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           UPII 60-B]
          Length = 409

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 9   EWLDEFHQY--HRCEGRVIKEKDDLICASRYAL 39
            WL+E +QY  +   G  +KE DD + A RYA+
Sbjct: 360 NWLNEVYQYIWNEKTGEPVKENDDSMDAMRYAI 392


>gi|329919929|ref|ZP_08276833.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           SPIN 1401G]
 gi|328936867|gb|EGG33301.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
           SPIN 1401G]
          Length = 409

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 9   EWLDEFHQY--HRCEGRVIKEKDDLICASRYAL 39
            WL+E +QY  +   G  +KE DD + A RYA+
Sbjct: 360 NWLNEVYQYIWNEKTGEPVKENDDSMDAMRYAI 392


>gi|300766295|ref|ZP_07076256.1| hypothetical protein LMHG_12799 [Listeria monocytogenes FSL N1-017]
 gi|300513003|gb|EFK40089.1| hypothetical protein LMHG_12799 [Listeria monocytogenes FSL N1-017]
          Length = 439

 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 10  WLDEFHQYHRCE--GRVIKEKDDLICASRYA 38
           WL E   Y R E  G+ + + +  +  SRYA
Sbjct: 398 WLQEMGMYVRDENSGKPVDKNNHAMDTSRYA 428


>gi|47097311|ref|ZP_00234868.1| phage terminase, large subunit, PBSX family [Listeria monocytogenes
           str. 1/2a F6854]
 gi|293596726|ref|ZP_05263865.2| phage terminase [Listeria monocytogenes J2818]
 gi|47014321|gb|EAL05297.1| phage terminase, large subunit, PBSX family [Listeria monocytogenes
           str. 1/2a F6854]
 gi|293591870|gb|EFG00205.1| phage terminase [Listeria monocytogenes J2818]
          Length = 442

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 10  WLDEFHQYHRCE--GRVIKEKDDLICASRYA 38
           WL E   Y R E  G+ + + +  +  SRYA
Sbjct: 401 WLQEMGMYVRDENSGKPVDKNNHAMDTSRYA 431


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.311    0.136    0.433 

Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 647,519,515
Number of Sequences: 13984884
Number of extensions: 20172721
Number of successful extensions: 76394
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 76312
Number of HSP's gapped (non-prelim): 60
length of query: 62
length of database: 4,792,584,752
effective HSP length: 34
effective length of query: 28
effective length of database: 4,317,098,696
effective search space: 120878763488
effective search space used: 120878763488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 76 (33.8 bits)