RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.1078_1 (62 letters) >2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A (A:) Length = 212 Score = 30.3 bits (68), Expect = 0.097 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 7/41 (17%) Query: 7 CQEWLDEFHQYHRCE-------GRVIKEKDDLICASRYALM 40 EF R+ + + I A+RYA Sbjct: 160 TPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFE 200 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.138 0.447 Gapped Lambda K H 0.267 0.0693 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 534,284 Number of extensions: 18482 Number of successful extensions: 78 Number of sequences better than 10.0: 1 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 8 Length of query: 62 Length of database: 4,956,049 Length adjustment: 31 Effective length of query: 31 Effective length of database: 3,908,094 Effective search space: 121150914 Effective search space used: 121150914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.1 bits)