RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.1078_1
         (62 letters)



>2wbn_A G2P, terminase large subunit; large terminase, nuclease,
           viral protein, DNA packaging; 1.90A {Bacillus phage
           SPP1} PDB: 2wc9_A (A:)
          Length = 212

 Score = 30.3 bits (68), Expect = 0.097
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 7/41 (17%)

Query: 7   CQEWLDEFHQYHRCE-------GRVIKEKDDLICASRYALM 40
                 EF               R+  + +  I A+RYA  
Sbjct: 160 TPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFE 200


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0693    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 534,284
Number of extensions: 18482
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 62
Length of database: 4,956,049
Length adjustment: 31
Effective length of query: 31
Effective length of database: 3,908,094
Effective search space: 121150914
Effective search space used: 121150914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)