RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1078_1
         (62 letters)



>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral
           protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB:
           2wc9_A
          Length = 212

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 10/56 (17%)

Query: 6   ECQEWLDEFHQYHRCEGR-------VIKEKDDLICASRYALMMKIFSISKPGYSSW 54
                  EF        +       +  + +  I A+RYA       + K G S W
Sbjct: 159 RTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFERD---MKKGGVSLW 211


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 602,698
Number of extensions: 21036
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 13
Length of query: 62
Length of database: 5,693,230
Length adjustment: 33
Effective length of query: 29
Effective length of database: 4,893,178
Effective search space: 141902162
Effective search space used: 141902162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.5 bits)