RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.1078_1 (62 letters) >2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A Length = 212 Score = 35.1 bits (80), Expect = 0.004 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 10/56 (17%) Query: 6 ECQEWLDEFHQYHRCEGR-------VIKEKDDLICASRYALMMKIFSISKPGYSSW 54 EF + + + + I A+RYA + K G S W Sbjct: 159 RTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFERD---MKKGGVSLW 211 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.138 0.447 Gapped Lambda K H 0.267 0.0519 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 602,698 Number of extensions: 21036 Number of successful extensions: 91 Number of sequences better than 10.0: 1 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 13 Length of query: 62 Length of database: 5,693,230 Length adjustment: 33 Effective length of query: 29 Effective length of database: 4,893,178 Effective search space: 141902162 Effective search space used: 141902162 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.5 bits)