HHsearch alignment for GI: peg_1079 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=98.05 E-value=0.00069 Score=40.30 Aligned_cols=236 Identities=12% Similarity=0.079 Sum_probs=118.4
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCC---CHHHHHHHHHHHCCCCCE-EEEEECCC-CCCCHHHHHHC-----CCC-----C
Q ss_conf 743369655033313589981898---974998863112475873-99992489-99875655640-----367-----9
Q 537021.9.peg.1 2 KAYEQGRDKWQSNTVHYVWFDEEP---PEDVYFEGLTRINATQGL-VTLTLTPL-KGRSPIIEHYL-----SAS-----S 66 (251)
Q Consensus 2 ~~~~q~~~~~~G~~~~~i~~DE~~---~~~~~~~~~~r~~~~~g~-i~~~~nP~-~~~~~~~~~~~-----~~~-----~ 66 (251)
T Consensus 110 ~~ls~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~sg~~~r~~~l~~~ITTag~~~~~~~~~~~~~~~~vl~g~~~~~d 189 (473)
T pfam03354 110 KALSNNGDQYDGGNPSLAIFDEMHEFKDRELVSTIVTGMRKQDNPQTIQITTAGPNRGGPYDEEREYIKRILEGDVERDD 189 (473)
T ss_pred EEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99857898766998728998722304882789999876316888719997677889887189999999999708777678
Q ss_pred CCEEEEEEEH-------------HHCCCC----CHHHH-HHHHHC--CC--HHHHHHHHCCCCEEE-CCCEEE--CCCCE
Q ss_conf 9759999771-------------334668----89999-999870--89--735643300510010-143000--01203
Q 537021.9.peg.1 67 SDRQVIRMTI-------------NETPHY----NEQER-KRIIDS--YP--LHEREARTKGEPILG-SGRIFP--IVEED 121 (251)
Q Consensus 67 ~~~~~~~~t~-------------~DNp~l----~~~~~-~~~~~~--~~--~~~~~~~~~G~~~~~-~g~v~~--~~~~~ 121 (251)
T Consensus 190 ~~~f~~i~~~d~~dd~~D~~~W~kANP~lg~~~~~~~l~~~~~~a~~~p~~~~~f~~k~lN~w~~~~~~~wl~~~~w~~~ 269 (473)
T pfam03354 190 DSYFGLIYELDNDDEVKDPAKWIKANPLLGSSLTRDNLLKGLIDAIGSPLKMNKFLTKNFNLWMGQDTDSWLTLQDWEQA 269 (473)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHC
T ss_conf 76699997169887768989999859676788799999999999864937689999972386344544657899999747
Q ss_pred EECCCCCCCCCCEEEEEECCCCCC-CCEEEEEEEECCCCEEEEEEEHHHCCCCH--------------------------
Q ss_conf 431565465674357520037748-71999999977399899994310259987--------------------------
Q 537021.9.peg.1 122 IVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVVKNYRCREQTP-------------------------- 174 (251)
Q Consensus 122 ~~~~~~~~~~~~~~~~g~D~G~~~-p~a~~~~~~~~~~~~~~i~de~~~~~~t~-------------------------- 174 (251)
T Consensus 270 -~~~~~~-~~g~~~~~G~DlS~~~Dlta~~~-~~~-~~~~~~~~~~~~ip~~~~~~~~~~~~~y~~w~~~G~~l~~~~g~ 345 (473)
T pfam03354 270 -VFPPFD-INGRRVYIGVDLSMKGDVTALVF-VYP-LDGKFYLHAHSFIPESQAEQIKQDGINYREFIDRGECLTLHDGG 345 (473)
T ss_pred -CCCHHH-HCCCEEEEEEEECCCCCCCEEEE-EEE-ECCEEEEEEEEECCHHHHHHHHCCCCCHHHHHHHCCEEEECCCC
T ss_conf -898578-47996999984035776413799-999-78999999986568627666540155689999709879944898
Q ss_pred ----HHHHHHHHHCCC--CCEEEECCCCCEECCCCCCCHHHHHHHCCC--EEEECCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf ----999999983324--870897263001117888888999997897--477657777767775899899999986079
Q 537021.9.peg.1 175 ----IFHVAALKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGM--KMLPECATFDDGSNGVEAGISDMLDRMRSG 246 (251)
Q Consensus 175 ----~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~s~~e~~r~~G~--~~~~~~~~~~kg~~sV~~GI~~l~~~~~~g 246 (251)
T Consensus 346 ~iD~~~v~~~i~~~~~~~~~~v~----~i~yD~~~a~~~~~~le~~g~~~~~v~~----~Q~~~~ls~~~k~le~~~~~g 417 (473)
T pfam03354 346 MIDPNQIIPWILDFITKTGLDVQ----AIGYDPWQAKYFIDRLESTFLDWPLVEI----RQGFFSLSNPIKELQELVAEN 417 (473)
T ss_pred EECHHHHHHHHHHHHHHCCCCEE----EEEECHHHHHHHHHHHHHCCCCCCEEEE----CCCCCCCCHHHHHHHHHHHCC
T ss_conf 32699999999999996299725----9984667899999999961899866984----687630077999999999779
Q ss_pred CCE
Q ss_conf 907
Q 537021.9.peg.1 247 RWK 249 (251)
Q Consensus 247 rl~ 249 (251)
T Consensus 418 ~i~ 420 (473)
T pfam03354 418 KLT 420 (473)
T ss_pred CEE
T ss_conf 989