HHsearch alignment for GI: peg_1079 and conserved domain: pfam04466
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=100.00 E-value=2.4e-42 Score=248.03 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=188.5
Q ss_pred CCCCCCCHHHHCCCC-CCEEEEECC--CCHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHCCCC----CCCEEE
Q ss_conf 974336965503331-358998189--897499886311247--58739999248999875655640367----997599
Q 537021.9.peg.1 1 LKAYEQGRDKWQSNT-VHYVWFDEE--PPEDVYFEGLTRINA--TQGLVTLTLTPLKGRSPIIEHYLSAS----SSDRQV 71 (251)
Q Consensus 1 f~~~~q~~~~~~G~~-~~~i~~DE~--~~~~~~~~~~~r~~~--~~g~i~~~~nP~~~~~~~~~~~~~~~----~~~~~~ 71 (251)
T Consensus 85 f~G~d-~~~~iks~~~i~~~~~eEa~~~~~~~~~~l~~~~r~~~~~~~i~~~~NP~~~~~w~~~~~~~~~~~~~~~~~~~ 163 (387)
T pfam04466 85 FYGMD-DPAKIKSIKDVSDAWIEEAAEFKTEDFDQLIPTIRRPKPGSEIFMSFNPVNKLNWTYKRFFKNDKSELDDDTYI 163 (387)
T ss_pred EEECC-CHHHHHCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCEEE
T ss_conf 98578-96884163661499994124479989999998853178871999982899987748899741775467788599
Q ss_pred EEEEHHHCCCCCHHHHHHHHHC--CCHHHHHHHHCCCCEEECCCEEECCCCEEECCCCCCCCCCEEEEEECCCC-CCCCE
Q ss_conf 9977133466889999999870--89735643300510010143000012034315654656743575200377-48719
Q 537021.9.peg.1 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFA 148 (251)
Q Consensus 72 ~~~t~~DNp~l~~~~~~~~~~~--~~~~~~~~~~~G~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~g~D~G~-~~p~a 148 (251)
T Consensus 164 ~~~ty~DNp~L~~~~i~~~e~~k~~dp~~y~~~~lGe~~~~~g~V~~~~~~~~~~~~~~~~~~~~~~~G~D~G~~~dpta 243 (387)
T pfam04466 164 HHSTYRDNPFLPEVDIREIEELKRRNPDYYRIEYLGEFGGLGTLVLPNFEIKPLWVEAAEDAHIKLGFKRDFGFDESATA 243 (387)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCEEEECCEEEECCCCCHHHHHCCCCCCEECCCCCCCCE
T ss_conf 99996169989999999999987039999899775715634877973544555232640220003342135464378877
Q ss_pred EEEEEEECCCCEEEEEEEHHHC--CCCHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCCHHHHHHHCCCEEEECCCCCC
Q ss_conf 9999997739989999431025--99879999999833248708972630011178888889999978974776577777
Q 537021.9.peg.1 149 AGHLVWNRDSDVIYVVKNYRCR--EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226 (251)
Q Consensus 149 ~~~~~~~~~~~~~~i~de~~~~--~~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~r~~G~~~~~~~~~~~ 226 (251)
T Consensus 244 ~v~~~~~~~~~~lyi~~e~y~~~~~~~~~~~~~~~~~~~~~~~~------i~~dsa~p~~i~~~~~~~~~~~~~----~~ 313 (387)
T pfam04466 244 SVRGALDVKKKVIYLYDEYYDPANQAIDDRTAEVLRDKNYTKEA------IKADSAEAKSIAALKSPGIFKIVG----AK 313 (387)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCE------EECCCCCCCHHHHHHHHCCHHHHC----CC
T ss_conf 99999977998999999998467876608999998863766650------223676852567998715434412----30
Q ss_pred CCCCCHHHHHHHHHH---HHCCCCCEE
Q ss_conf 677758998999999---860799078
Q 537021.9.peg.1 227 DGSNGVEAGISDMLD---RMRSGRWKV 250 (251)
Q Consensus 227 kg~~sV~~GI~~l~~---~~~~grl~V 250 (251)
T Consensus 314 k~~~sv~~gi~~l~~~~~i~~~~~~~~ 340 (387)
T pfam04466 314 KGPGSVLQKTRFLDTFRAVLIGEYLDP 340 (387)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 489727888889999999960576200