Query 537021.9.peg.1079_1 Match_columns 251 No_of_seqs 131 out of 760 Neff 9.0 Searched_HMMs 13730 Date Wed May 25 06:37:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1079.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d3bzka5 c.55.3.13 (A:325-473) 47.8 7.2 0.00052 16.1 5.0 52 132-185 3-55 (149) 2 d1rifa_ c.37.1.23 (A:) DNA hel 44.1 8.3 0.0006 15.8 4.0 17 76-92 85-101 (282) 3 d1yksa1 c.37.1.14 (A:185-324) 43.3 8.5 0.00062 15.7 3.0 10 161-170 101-110 (140) 4 d1vdma1 c.61.1.1 (A:1-153) Ppr 28.8 9.3 0.00068 15.5 1.1 32 156-187 81-112 (153) 5 d1a1va1 c.37.1.14 (A:190-325) 21.2 21 0.0015 13.6 4.0 10 161-170 97-106 (136) 6 d1dkgd1 c.55.1.1 (D:3-185) Hea 20.1 16 0.0012 14.2 1.0 17 204-220 149-165 (183) 7 d1jcea1 c.55.1.1 (A:4-140) Pro 18.3 25 0.0018 13.2 1.7 10 136-145 2-11 (137) 8 d1bupa1 c.55.1.1 (A:4-188) Hea 17.8 21 0.0016 13.6 1.2 16 205-220 153-168 (185) 9 d1z3ix2 c.37.1.19 (X:92-389) R 13.8 33 0.0024 12.6 3.4 30 161-190 195-224 (298) 10 d1c4oa2 c.37.1.19 (A:410-583) 12.5 36 0.0026 12.4 3.7 35 29-64 20-54 (174) No 1 >d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Probab=47.75 E-value=7.2 Score=16.12 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=27.7 Q ss_pred CCEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEHHHC-CCCHHHHHHHHHHCC Q ss_conf 743575200377487199999997739989999431025-998799999998332 Q 537021.9.peg.1 132 HWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR-EQTPIFHVAALKSWG 185 (251) Q Consensus 132 ~~~~~~g~D~G~~~p~a~~~~~~~~~~~~~~i~de~~~~-~~t~~~~~~~i~~~~ 185 (251) ...+..|+|.||.+. +-++++|.+|+.+.-.--|-.. ....+...+.|.++. T Consensus 3 ~~~~vlg~DPg~r~g--ck~AvlD~~G~vld~~viyp~~~~~~~~~a~~~l~~li 55 (149) T d3bzka5 3 GPRATLGLDPGLRTG--VKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALC 55 (149) T ss_dssp CSCCEEEEECCSTTC--EEEEEECTTSCEEEEEEECCSTTTCCHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCC--CEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 885588878886566--18999979999899999843796779999999999999 No 2 >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Probab=44.10 E-value=8.3 Score=15.80 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=8.4 Q ss_pred HHHCCCCCHHHHHHHHH Q ss_conf 13346688999999987 Q 537021.9.peg.1 76 INETPHYNEQERKRIID 92 (251) Q Consensus 76 ~~DNp~l~~~~~~~~~~ 92 (251) ..++..++.+.+.+... T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (282) T d1rifa_ 85 INEKEELSRKDFDEWLS 101 (282) T ss_dssp GGCCCCCCHHHHHHHHH T ss_pred CCCCCCCCCHHCCCCCC T ss_conf 34564335100102124 No 3 >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Probab=43.30 E-value=8.5 Score=15.73 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=6.6 Q ss_pred EEEEEEHHHC Q ss_conf 9999431025 Q 537021.9.peg.1 161 IYVVKNYRCR 170 (251) Q Consensus 161 ~~i~de~~~~ 170 (251) +.|+||.... T Consensus 101 lvIiDEaH~~ 110 (140) T d1yksa1 101 VIIMDEAHFL 110 (140) T ss_dssp EEEETTTTCC T ss_pred EEEECCCCCC T ss_conf 8997543346 No 4 >d1vdma1 c.61.1.1 (A:1-153) Pprobable purine phosphoribosyltransferase PH0095 {Pyrococcus horikoshii [TaxId: 53953]} Probab=28.77 E-value=9.3 Score=15.52 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=27.5 Q ss_pred CCCCEEEEEEEHHHCCCCHHHHHHHHHHCCCC Q ss_conf 73998999943102599879999999833248 Q 537021.9.peg.1 156 RDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187 (251) Q Consensus 156 ~~~~~~~i~de~~~~~~t~~~~~~~i~~~~~~ 187 (251) ..++.+.|+|....+|.|....++.|++.+.. T Consensus 81 ~~gk~VLIVDDii~TG~Tl~~~~~~l~~~g~~ 112 (153) T d1vdma1 81 LKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAK 112 (153) T ss_dssp CBTCEEEEEEEEESSCHHHHHHHHHHHTTTBS T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCC T ss_conf 68998999960144687489999877740985 No 5 >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Probab=21.20 E-value=21 Score=13.59 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=6.6 Q ss_pred EEEEEEHHHC Q ss_conf 9999431025 Q 537021.9.peg.1 161 IYVVKNYRCR 170 (251) Q Consensus 161 ~~i~de~~~~ 170 (251) +.|+||.... T Consensus 97 ~vIiDE~H~~ 106 (136) T d1a1va1 97 IIICDECHST 106 (136) T ss_dssp EEEEETTTCC T ss_pred EEEEECCCCC T ss_conf 9998255535 No 6 >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Probab=20.13 E-value=16 Score=14.25 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=10.7 Q ss_pred CCCHHHHHHHCCCEEEE Q ss_conf 88889999978974776 Q 537021.9.peg.1 204 GEQLSAQYRRQGMKMLP 220 (251) Q Consensus 204 ~~s~~e~~r~~G~~~~~ 220 (251) ...+.+-.+.+|++... T Consensus 149 r~~l~~Aa~~AG~~~~~ 165 (183) T d1dkgd1 149 RQATKDAGRIAGLEVKR 165 (183) T ss_dssp HHHHHHHHHHTTCEESC T ss_pred HHHHHHHHHHCCCCEEE T ss_conf 99999999986998778 No 7 >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Probab=18.30 E-value=25 Score=13.23 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=7.4 Q ss_pred EEEECCCCCC Q ss_conf 7520037748 Q 537021.9.peg.1 136 IGGMDFGWHH 145 (251) Q Consensus 136 ~~g~D~G~~~ 145 (251) .+|+|||.++ T Consensus 2 ~iGIDlGTtn 11 (137) T d1jcea1 2 DIGIDLGTAN 11 (137) T ss_dssp EEEEEECSSE T ss_pred EEEEECCHHH T ss_conf 3899757562 No 8 >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Probab=17.78 E-value=21 Score=13.56 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=10.3 Q ss_pred CCHHHHHHHCCCEEEE Q ss_conf 8889999978974776 Q 537021.9.peg.1 205 EQLSAQYRRQGMKMLP 220 (251) Q Consensus 205 ~s~~e~~r~~G~~~~~ 220 (251) ..+.+-.+.+|++... T Consensus 153 ~~~~~Aa~~AGl~~~~ 168 (185) T d1bupa1 153 QATKDAGTIAGLNVLR 168 (185) T ss_dssp HHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCCCCEEE T ss_conf 9999999986997689 No 9 >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Probab=13.76 E-value=33 Score=12.58 Aligned_cols=30 Identities=10% Similarity=-0.074 Sum_probs=17.3 Q ss_pred EEEEEEHHHCCCCHHHHHHHHHHCCCCCEE Q ss_conf 999943102599879999999833248708 Q 537021.9.peg.1 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPW 190 (251) Q Consensus 161 ~~i~de~~~~~~t~~~~~~~i~~~~~~~~~ 190 (251) +.|+||-..-........+.+........+ T Consensus 195 ~vI~DEaH~ikn~~s~~~~a~~~l~~~~rl 224 (298) T d1z3ix2 195 LVICDEGHRLKNSDNQTYLALNSMNAQRRV 224 (298) T ss_dssp EEEETTGGGCCTTCHHHHHHHHHHCCSEEE T ss_pred EEECCCCCCCCCCCCHHHHHHHCCCCCEEE T ss_conf 541142322013220345644213411256 No 10 >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Probab=12.51 E-value=36 Score=12.37 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=15.9 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCC Q ss_conf 998863112475873999924899987565564036 Q 537021.9.peg.1 29 VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64 (251) Q Consensus 29 ~~~~~~~r~~~~~g~i~~~~nP~~~~~~~~~~~~~~ 64 (251) +..++..+ ..++.++++.++.......+...+... T Consensus 20 ll~~i~~~-~~~g~r~lvfc~t~~~~~~l~~~L~~~ 54 (174) T d1c4oa2 20 LMEGIRER-AARGERTLVTVLTVRMAEELTSFLVEH 54 (174) T ss_dssp HHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHHT T ss_pred HHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHC T ss_conf 99999999-865983899982303799999999865 Done!