BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.1079_1
(251 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|167041080|gb|ABZ05841.1| hypothetical protein ALOHA_HF400048F7ctg1g8 [uncultured marine
microorganism HF4000_48F7]
Length = 504
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 99/251 (39%), Positives = 155/251 (61%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K+Y+ G W V YVW DEEPP+++Y + L + G V+LT TP G + ++
Sbjct: 173 FKSYDAGPASWMGVAVDYVWLDEEPPQEIYSQALRATLKSGGPVSLTFTPEAGVTGVVAM 232
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L+ + +++ T ++ PH + + R+ I+ + P HER R+KG P LGSG++FP+ E+
Sbjct: 233 FLNERKGGQALVQATWDDAPHLSLEVREEILAALPPHERLMRSKGIPTLGSGQVFPVPED 292
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I++++ IP+H+ +I G+DFG+ HP A + +RD+DV+Y+ YR + + H A
Sbjct: 293 QIMVSAFAIPDHFSRIAGIDFGFDHPTACVWMAHDRDTDVVYLYDAYREKGSGMLQHAEA 352
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K G ++P AWPHDG HDK SGE L+ QYRR G+ L T +G VE G+ +L
Sbjct: 353 IKHRGGFIPVAWPHDGSIHDKGSGEALATQYRRSGVNFLGSHFTNPEGGIAVEPGLMALL 412
Query: 241 DRMRSGRWKVF 251
RM++GR+KVF
Sbjct: 413 TRMQTGRFKVF 423
>gi|307315429|ref|ZP_07594994.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
gi|306898808|gb|EFN29464.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
Length = 477
Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 174/251 (69%), Positives = 201/251 (80%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ+NTV YVWFDEEPPEDVYFEG+TR NAT+G + +T TPL+G S ++
Sbjct: 169 FKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGAIAVTFTPLRGLSAVVAR 228
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
YL S DR VI MTI + HY QER+R+IDSYP HEREART+G P LGSGRIFP+ EE
Sbjct: 229 YLMEKSPDRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRGVPALGSGRIFPVTEE 288
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I I+ +IP+HWVQIGG+DFGW HPFAA W+RD+DV +V K YR RE TPI H AA
Sbjct: 289 SIRIDPFEIPKHWVQIGGLDFGWDHPFAAVGCAWDRDADVFHVTKIYREREATPIIHAAA 348
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG +PWAWPHDGLQHDK SGEQL+AQYR QG+ +LPE ATFDDG+NGVEAG+SDML
Sbjct: 349 LKPWGAAMPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVEAGLSDML 408
Query: 241 DRMRSGRWKVF 251
RM+SGRWKVF
Sbjct: 409 QRMQSGRWKVF 419
>gi|15965769|ref|NP_386122.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
gi|15075038|emb|CAC46595.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
Length = 477
Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 174/251 (69%), Positives = 201/251 (80%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ+NTV YVWFDEEPPEDVYFEG+TR NAT+G + +T TPL+G S ++
Sbjct: 169 FKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGAIAVTFTPLRGLSAVVAR 228
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
YL S DR VI MTI + HY QER+R+IDSYP HEREART+G P LGSGRIFP+ EE
Sbjct: 229 YLMEKSPDRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRGVPALGSGRIFPVTEE 288
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I I+ +IP+HWVQIGG+DFGW HPFAA W+RD+DV +V K YR RE TPI H AA
Sbjct: 289 SIRIDPFEIPKHWVQIGGLDFGWDHPFAAVGCAWDRDADVFHVTKIYREREATPIIHAAA 348
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG +PWAWPHDGLQHDK SGEQL+AQYR QG+ +LPE ATFDDG+NGVEAG+SDML
Sbjct: 349 LKPWGAAMPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVEAGLSDML 408
Query: 241 DRMRSGRWKVF 251
RM+SGRWKVF
Sbjct: 409 QRMQSGRWKVF 419
>gi|307318836|ref|ZP_07598268.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
gi|306895557|gb|EFN26311.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
Length = 477
Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 174/251 (69%), Positives = 201/251 (80%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ+NTV YVWFDEEPPEDVYFEG+TR NAT+G + +T TPL+G S ++
Sbjct: 169 FKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGAIAVTFTPLRGLSAVVAR 228
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
YL S DR VI MTI + HY QER+R+IDSYP HEREART+G P LGSGRIFP+ EE
Sbjct: 229 YLMEKSPDRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRGVPALGSGRIFPVTEE 288
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I I+ +IP+HWVQIGG+DFGW HPFAA W+RD+DV +V K YR RE TPI H AA
Sbjct: 289 SIRIDPFEIPKHWVQIGGLDFGWDHPFAAVGCAWDRDADVFHVTKIYREREATPIIHAAA 348
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG +PWAWPHDGLQHDK SGEQL+AQYR QG+ +LPE ATFDDG+NGVEAG+SDML
Sbjct: 349 LKPWGAAMPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVEAGLSDML 408
Query: 241 DRMRSGRWKVF 251
RM+SGRWKVF
Sbjct: 409 QRMQSGRWKVF 419
>gi|150397042|ref|YP_001327509.1| hypothetical protein Smed_1839 [Sinorhizobium medicae WSM419]
gi|150028557|gb|ABR60674.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419]
Length = 477
Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats.
Identities = 176/251 (70%), Positives = 201/251 (80%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ+NTV YVWFDEEPPEDVYFEG+TR NAT+G + +T TPLKG S ++
Sbjct: 169 FKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGLSAVVAR 228
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
YL S+DR+V MTI + HY +ER+RIIDSYP HEREARTKG P LGSGRIFP+ EE
Sbjct: 229 YLMEKSADREVTTMTIEDAEHYTPEERRRIIDSYPAHEREARTKGVPALGSGRIFPVTEE 288
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + DIP+HWVQIGG+DFGW HPFAA W+RD+DV YV K YR RE TPI H AA
Sbjct: 289 SIRADPFDIPKHWVQIGGLDFGWDHPFAAVGCAWDRDADVFYVTKLYRERESTPIIHAAA 348
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG LPWAWPHDGLQHDK SGEQL+AQYR QG+ +LPE ATFDDG+NGVEAG+SDML
Sbjct: 349 LKPWGGTLPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVEAGLSDML 408
Query: 241 DRMRSGRWKVF 251
RM++GRWKVF
Sbjct: 409 QRMQTGRWKVF 419
>gi|227821702|ref|YP_002825672.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
gi|227340701|gb|ACP24919.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
Length = 416
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 174/251 (69%), Positives = 201/251 (80%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ+NTV YVWFDEEPPEDVYFEG+TR NAT+G + +T TPLKG S ++
Sbjct: 108 FKAYEQGRGKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGMSTVVAR 167
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
Y+ S DR+VI MTI++ HY +ER+RIIDSYP HEREARTKG P LGSGRIFP+ EE
Sbjct: 168 YILEKSPDREVITMTIDDAEHYTPEERQRIIDSYPAHEREARTKGVPSLGSGRIFPVAEE 227
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I I +IP+HWVQIGG+DFGW HPF A W+RD+DV YV K YR RE TPI H AA
Sbjct: 228 SITIAPFEIPKHWVQIGGLDFGWDHPFGAAGCAWDRDADVFYVTKVYREREATPIIHAAA 287
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG WLPW+WPHDGLQHDK SGEQL+ QYR QG+ MLPE ATF+DG+NGVEAG+SDML
Sbjct: 288 LKPWGAWLPWSWPHDGLQHDKGSGEQLATQYRAQGLNMLPERATFEDGTNGVEAGLSDML 347
Query: 241 DRMRSGRWKVF 251
RM++GRWKVF
Sbjct: 348 QRMQTGRWKVF 358
>gi|71274675|ref|ZP_00650963.1| Protein of unknown function DUF264 [Xylella fastidiosa Dixon]
gi|71901596|ref|ZP_00683677.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
gi|170730087|ref|YP_001775520.1| putative DNA packaging protein GP2 [Xylella fastidiosa M12]
gi|71164407|gb|EAO14121.1| Protein of unknown function DUF264 [Xylella fastidiosa Dixon]
gi|71728644|gb|EAO30794.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
gi|167964880|gb|ACA11890.1| putative DNA packaging protein GP2 [Xylella fastidiosa M12]
Length = 472
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 153/251 (60%), Positives = 197/251 (78%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK+++QGR+KWQ++TVH+VWFDEEPPEDVYFEG+TR N T G V +T TPLKG S ++
Sbjct: 164 LKSFDQGREKWQADTVHWVWFDEEPPEDVYFEGITRTNRTFGPVFMTFTPLKGMSNVVRR 223
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L+ ++DR ++M+I + HY+ +E RI SYP HER+ART+G P LGSGR+FPI +E
Sbjct: 224 FLTEDAADRGYVQMSIEDAEHYSAEECARITASYPPHERDARTQGVPALGSGRVFPIAQE 283
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + IP W IGGMDFG+ HPFAA L W+RD+D++YVV YR RE TPI H AA
Sbjct: 284 EISVAPFAIPAQWALIGGMDFGYDHPFAAVKLAWDRDADILYVVCAYRKRESTPIIHAAA 343
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG LPWAWPHDGLQHDK SG+QL+ QYR+QG+ MLP+ ATF+DG+NG+EAG+++ML
Sbjct: 344 LKPWGVTLPWAWPHDGLQHDKGSGDQLAEQYRQQGLAMLPQRATFEDGTNGLEAGVTEML 403
Query: 241 DRMRSGRWKVF 251
DRM +GR KVF
Sbjct: 404 DRMHTGRLKVF 414
>gi|227822449|ref|YP_002826421.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
gi|227341450|gb|ACP25668.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
Length = 454
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 174/251 (69%), Positives = 201/251 (80%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ+NTV YVWFDEEPPEDVYFEG+TR NAT+G + +T TPLKG S ++
Sbjct: 146 FKAYEQGRGKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGAIAVTFTPLKGLSNVVAR 205
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
YL S DR+VI MTI + HY +ER+RII+SYP HEREARTKG P LGSGRIFP+ EE
Sbjct: 206 YLMEKSPDREVITMTIEDAEHYTPEERQRIIESYPAHEREARTKGVPALGSGRIFPVTEE 265
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + DIP+HWVQIGG+DFGW HPFAA W+RD+DV YV + YR RE TPI H AA
Sbjct: 266 AIRVEPFDIPKHWVQIGGLDFGWDHPFAAVGCAWDRDADVFYVTRIYREREATPIIHAAA 325
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LK WG WLP+AWPHDGLQHDK SGEQL+AQYR QG+ +L E ATFDDG+NGVEAG+SDML
Sbjct: 326 LKPWGAWLPFAWPHDGLQHDKGSGEQLAAQYRAQGLPLLAERATFDDGTNGVEAGLSDML 385
Query: 241 DRMRSGRWKVF 251
RM++GRWKVF
Sbjct: 386 QRMQTGRWKVF 396
>gi|71897556|ref|ZP_00679801.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
gi|71732459|gb|EAO34512.1| Protein of unknown function DUF264 [Xylella fastidiosa Ann-1]
Length = 471
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 155/251 (61%), Positives = 196/251 (78%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK+++QGR+KWQ++TV +VWFDEEPPEDVYFEG+TR N T G V +T TPLKG S ++
Sbjct: 163 LKSFDQGREKWQADTVDWVWFDEEPPEDVYFEGITRTNRTFGPVFMTFTPLKGMSSVVRR 222
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + DR +++MTI++ HY+ ++R RII SYP HEREARTKG P LGSGR+FPI E+
Sbjct: 223 FLLEQAPDRGLVQMTIDDAEHYSPEDRARIIASYPAHEREARTKGTPSLGSGRVFPIAED 282
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I I IPE W IGGMDFG+ HPFAA + W+R++DVIYV+ YR RE TP+ H AA
Sbjct: 283 SIAIAPFSIPEEWALIGGMDFGYDHPFAAVKMAWDREADVIYVMCAYRQREATPVIHTAA 342
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
L+ WG LPWAWPHDGLQHDK SGEQL+ QYR+QG+ ML + ATF DG+NG+EAG+++ML
Sbjct: 343 LRPWGAHLPWAWPHDGLQHDKGSGEQLAEQYRQQGLSMLGQRATFTDGTNGLEAGVTEML 402
Query: 241 DRMRSGRWKVF 251
DRM +GR KVF
Sbjct: 403 DRMHTGRLKVF 413
>gi|273810450|ref|YP_003344921.1| TerL [Xylella phage Xfas53]
gi|257097825|gb|ACV41131.1| TerL [Xylella phage Xfas53]
Length = 470
Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 155/251 (61%), Positives = 196/251 (78%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK+++QGR+KWQ++TV +VWFDEEPPEDVYFEG+TR N T G V +T TPLKG S ++
Sbjct: 162 LKSFDQGREKWQADTVDWVWFDEEPPEDVYFEGITRTNRTFGPVFMTFTPLKGMSSVVRR 221
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + DR +++MTI++ HY+ ++R RII SYP HEREARTKG P LGSGR+FPI E+
Sbjct: 222 FLLEQAPDRGLVQMTIDDAEHYSPEDRARIIASYPAHEREARTKGTPSLGSGRVFPIAED 281
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I I IPE W IGGMDFG+ HPFAA + W+R++DVIYV+ YR RE TP+ H AA
Sbjct: 282 SIAIAPFSIPEEWALIGGMDFGYDHPFAAVKMAWDREADVIYVMCAYRQREATPVIHTAA 341
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
L+ WG LPWAWPHDGLQHDK SGEQL+ QYR+QG+ ML + ATF DG+NG+EAG+++ML
Sbjct: 342 LRPWGAHLPWAWPHDGLQHDKGSGEQLAEQYRQQGLSMLGQRATFTDGTNGLEAGVTEML 401
Query: 241 DRMRSGRWKVF 251
DRM +GR KVF
Sbjct: 402 DRMHTGRLKVF 412
>gi|315122536|ref|YP_004063025.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495938|gb|ADR52537.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 455
Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats.
Identities = 219/251 (87%), Positives = 233/251 (92%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LKAYEQGR+KWQSNTV YVWFDEEPPEDVYFEGLTRINATQGLV LTLTPLKGRS I+EH
Sbjct: 147 LKAYEQGREKWQSNTVDYVWFDEEPPEDVYFEGLTRINATQGLVALTLTPLKGRSNIVEH 206
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
YLS+SS DRQVIRMT+ ETPHY +ER RII+SYPLHEREARTKGEP+LGSGRIFPI+E+
Sbjct: 207 YLSSSSPDRQVIRMTLEETPHYTAKERIRIINSYPLHEREARTKGEPVLGSGRIFPILEQ 266
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
DIVI S DIPEHW QIGGMDFGWHHPFAA L WNRDSDVIYVVKNYRCREQTP+FH A
Sbjct: 267 DIVITSFDIPEHWSQIGGMDFGWHHPFAAVQLAWNRDSDVIYVVKNYRCREQTPLFHAAV 326
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
LKSWGKWLPWAWPHDGLQHDK SGEQL+ QYR+QGMKMLPECATFDDGSNGVEAG+SD+L
Sbjct: 327 LKSWGKWLPWAWPHDGLQHDKGSGEQLAVQYRQQGMKMLPECATFDDGSNGVEAGVSDIL 386
Query: 241 DRMRSGRWKVF 251
DRMRSGRWKVF
Sbjct: 387 DRMRSGRWKVF 397
>gi|167600439|ref|YP_001671939.1| terminase large subunit [Pseudomonas phage LUZ24]
gi|161168302|emb|CAP45467.1| terminase large subunit [Pseudomonas phage LUZ24]
Length = 482
Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 9/260 (3%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K+YE +DK+ + +W DEE P+D+Y + +TR T G+V LT TP G + I++
Sbjct: 154 FKSYEMSQDKFMGTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKD 213
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + ++ + + PH + + +++++ Y ER R +G P+LGSG +FPI+EE
Sbjct: 214 FLQDLKPGQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGVPMLGSGVVFPILEE 273
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
V IP+H+ +I G+D G+ HP A + W+ + D Y+ +T H A
Sbjct: 274 KFVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADA 333
Query: 181 L-KSWGKWLPWAWPHDGLQHDKRS-GEQLSAQYRRQG-MKMLPECATFDDGS------NG 231
+ G +P PHD +HD + G + + + ++ E + G N
Sbjct: 334 IYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNS 393
Query: 232 VEAGISDMLDRMRSGRWKVF 251
VE G++ ML RM +G KVF
Sbjct: 394 VEFGVNWMLTRMENGDLKVF 413
>gi|27476053|ref|NP_775255.1| terminase [Pseudomonas phage PaP3]
gi|27414483|gb|AAL85569.1| terminase [Pseudomonas phage PaP3]
Length = 482
Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K+YE +DK+ + +W DEE P+D+Y + +TR T G+V LT TP G + I++
Sbjct: 154 FKSYEMSQDKFMGTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKD 213
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + +I + + PH + + +++++ Y ER R +G P+LGSG +FPI+EE
Sbjct: 214 FLQDLKPGQFLIHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGIPMLGSGVVFPILEE 273
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
V DIP+H+ +I G+D G+ HP A + W+ + D Y+ +T H A
Sbjct: 274 KFVCEPFDIPDHFHRIIGIDLGFDHPNAIACVAWDAEKDKYYLYDERSESGETLGMHADA 333
Query: 181 L-KSWGKWLPWAWPHDGLQHDKRS-GEQLSAQYRRQG-MKMLPECATFDDGS------NG 231
+ G +P PHD +HD + G + + + ++ E + G N
Sbjct: 334 IYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNS 393
Query: 232 VEAGISDMLDRMRSGRWKVF 251
VE G++ ML RM +G KVF
Sbjct: 394 VEFGVNWMLTRMENGDLKVF 413
>gi|318065950|ref|YP_004123808.1| Gp2 [Salmonella phage ST160]
gi|289066936|gb|ADC81147.1| Gp2 [Salmonella phage ST160]
Length = 517
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 200 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 259
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 260 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 319
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 320 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 379
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N VE+GIS++
Sbjct: 380 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELR 439
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 440 DLMLEGRFKVF 450
>gi|197363441|ref|YP_002143078.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197094918|emb|CAR60455.1| putative terminase large subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|320086843|emb|CBY96615.1| DNA packaging protein gp2 Terminase large subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 499
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|238912312|ref|ZP_04656149.1| putative terminase large subunit [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|261245593|emb|CBG23388.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 499
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|221328620|ref|YP_002533461.1| Terminase, large subunit [Salmonella phage epsilon34]
gi|255252684|ref|YP_003090219.1| Terminase, large subunit [Salmonella phage c341]
gi|193244688|gb|ACF16628.1| Terminase, large subunit [Salmonella phage epsilon34]
gi|223697657|gb|ACN18281.1| Terminase, large subunit [Salmonella phage g341c]
Length = 499
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|24371583|ref|NP_720326.1| gp2 [Enterobacteria phage ST64T]
gi|24250810|gb|AAL15523.1| gp2 [Salmonella phage ST64T]
Length = 517
Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 160/251 (63%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 200 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 259
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 260 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 319
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 320 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 379
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GI ++
Sbjct: 380 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFPDGGNSVESGIGELR 439
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 440 DLMLEGRFKVF 450
>gi|161504537|ref|YP_001571649.1| hypothetical protein SARI_02650 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865884|gb|ABX22507.1| hypothetical protein SARI_02650 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 499
Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|51236724|ref|YP_063734.1| terminase large subunit [Enterobacteria phage P22]
gi|137879|sp|P26745|TERL_BPP22 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein gp2; AltName: Full=Terminase large subunit
gi|21914414|gb|AAM81379.1|AF527608_1 terminase large subunit [Salmonella phage P22-pbi]
gi|553005|gb|AAA72959.1| DNA pacaging [Enterobacteria phage P22]
gi|8439622|gb|AAF75044.1| terminase large subunit [Enterobacteria phage P22]
gi|28394263|tpg|DAA00977.1| TPA_inf: terminase large subunit [Enterobacteria phage P22]
Length = 499
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|168240109|ref|ZP_02665041.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451817|ref|YP_002044341.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194410121|gb|ACF70340.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205340165|gb|EDZ26929.1| DNA packaging protein gp2 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
Length = 499
Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|60476789|gb|AAX21426.1| gp2 [Enterobacteria phage L]
Length = 499
Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 160/251 (63%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GI ++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFPDGGNSVESGIGELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|219681243|ref|YP_002455888.1| Gp2 [Salmonella enterica bacteriophage SE1]
gi|66473858|gb|AAY46504.1| Gp2 [Salmonella phage SE1]
Length = 499
Score = 205 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 160/251 (63%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRAAWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|198245578|ref|YP_002214540.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197940094|gb|ACH77427.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 499
Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 AIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFSDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|157734711|dbj|BAF80717.1| terminase large subunit [Enterobacteria phage P22]
gi|169658843|dbj|BAG12600.1| terminase large subunit [Enterobacteria phage P22]
Length = 499
Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 AIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFSDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DLMLEGRFKVF 432
>gi|326622293|gb|EGE28638.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 482
Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 161/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 165 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 224
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 225 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 284
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 285 AIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 344
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLPE ATF DG N VE+GIS++
Sbjct: 345 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFSDGGNSVESGISELR 404
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 405 DLMLEGRFKVF 415
>gi|62178924|ref|YP_215341.1| gp2-like protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|62126557|gb|AAX64260.1| gp2-like protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322713379|gb|EFZ04950.1| gp2-like protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 499
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 124/251 (49%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D IYV + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADTIYVSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYAEAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|218549377|ref|YP_002383168.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
fergusonii ATCC 35469]
gi|307311077|ref|ZP_07590721.1| protein of unknown function DUF264 [Escherichia coli W]
gi|331669066|ref|ZP_08369914.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
coli TA271]
gi|218356918|emb|CAQ89550.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
fergusonii ATCC 35469]
gi|306908583|gb|EFN39080.1| protein of unknown function DUF264 [Escherichia coli W]
gi|312945545|gb|ADR26372.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
coli O83:H1 str. NRG 857C]
gi|315061655|gb|ADT75982.1| DNA packaging protein gp2 (terminase large subunit) [Escherichia
coli W]
gi|323377763|gb|ADX50031.1| DNA packaging protein gp2 (terminase large subunit) [Escherichia
coli KO11]
gi|324117758|gb|EGC11657.1| terminase [Escherichia coli E1167]
gi|331064260|gb|EGI36171.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
coli TA271]
Length = 499
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 124/251 (49%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D IYV + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADTIYVSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|323967108|gb|EGB62533.1| terminase [Escherichia coli M863]
Length = 499
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 124/251 (49%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D IYV + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAHVQLWWDKDADTIYVSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|281599695|gb|ADA72679.1| Gp2-like protein [Shigella flexneri 2002017]
Length = 441
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 124/251 (49%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 124 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 183
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 184 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 243
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D IYV + ++ +E+T + A
Sbjct: 244 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADTIYVSRVWKAKEKTAVQAWGA 303
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 304 VKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 363
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 364 DMMLDGRFKVF 374
>gi|110804280|ref|YP_687800.1| putative terminase large subunit [Shigella flexneri 5 str. 8401]
gi|110613828|gb|ABF02495.1| putative terminase large subunit [Shigella flexneri 5 str. 8401]
Length = 354
Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 37 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 96
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 97 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 156
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++++D IYV + ++ +E+T + A
Sbjct: 157 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGA 216
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 217 VKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 276
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 277 DMMLDGRFKVF 287
>gi|46358697|ref|YP_006405.1| Gp2 [Enterobacteria phage ST104]
gi|46357933|dbj|BAD15212.1| Gp2 [Enterobacteria phage ST104]
gi|312911340|dbj|BAJ35314.1| putative terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
Length = 499
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 121/251 (48%), Positives = 160/251 (63%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E T + A
Sbjct: 302 TIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N VE+GIS++
Sbjct: 362 VKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+K F
Sbjct: 422 DLMLEGRFKAF 432
>gi|281599578|gb|ADA72562.1| putative terminase large subunit [Shigella flexneri 2002017]
Length = 351
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 123/251 (49%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 34 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 93
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 94 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 153
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++++D IYV + ++ +E+T + A
Sbjct: 154 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGA 213
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+KSW +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 214 VKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 273
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 274 DMMLDGRFKVF 284
>gi|315299781|gb|EFU59021.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
16-3]
Length = 499
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 121/251 (48%), Positives = 162/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VW DEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWVDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D+IY+ + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADIIYLSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K W +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKPWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|331657716|ref|ZP_08358678.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
coli TA206]
gi|331055964|gb|EGI27973.1| DNA packaging protein gp2 (Terminase large subunit) [Escherichia
coli TA206]
Length = 499
Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D+IY+ + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADIIYLSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K W +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKPWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|327251967|gb|EGE63639.1| DNA packaging protein gp2 [Escherichia coli STEC_7v]
gi|327254495|gb|EGE66117.1| DNA packaging protein gp2 [Escherichia coli STEC_7v]
Length = 499
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D+IY+ + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADIIYLSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K W +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKPWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|293410725|ref|ZP_06654301.1| DNA-packaging protein gp2 [Escherichia coli B354]
gi|291471193|gb|EFF13677.1| DNA-packaging protein gp2 [Escherichia coli B354]
Length = 499
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 122/251 (48%), Positives = 163/251 (64%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ IGGMDFGW HP A L W++D+D+IY+ + ++ +E+T + A
Sbjct: 302 TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADIIYLSRVWKAKEKTAVQAWGA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K W +P AWPHDG QH+K GEQL QY G ML E AT+ DG N VE GI+++
Sbjct: 362 VKPWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|300920006|ref|ZP_07136465.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
115-1]
gi|300412953|gb|EFJ96263.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
115-1]
Length = 498
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 119/251 (47%), Positives = 160/251 (63%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y QGR +WQ +T+H VWFDEEPP +Y EGLTR N LT TPL G S ++
Sbjct: 182 FKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTK 241
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GSGRIF I EE
Sbjct: 242 FLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE 301
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I + P+H+ I MDFGW HP A L W++D DVIY+ + ++ +++ +A
Sbjct: 302 TIKCQPFECPDHFYVINAMDFGWDHPQAHIQLWWDKDEDVIYLSRVWKAKQKKATEAWSA 361
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K+W K P AWPHDG QH+K G QL QY G MLP+ AT+ DG N VE GI+++
Sbjct: 362 VKAWSKNTPTAWPHDGHQHEKGGGAQLKEQYADAGFDMLPDHATWPDGGNAVEPGIAEIR 421
Query: 241 DRMRSGRWKVF 251
D M GR+KVF
Sbjct: 422 DMMLDGRFKVF 432
>gi|167583562|ref|YP_001671752.1| terminase large subunit [Enterobacteria phage phiEco32]
gi|164375400|gb|ABY52808.1| terminase large subunit [Enterobacteria phage phiEco32]
Length = 513
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 81/268 (30%), Positives = 139/268 (51%), Gaps = 17/268 (6%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPED---VYFEGLTRINATQGLVTLTLTPLKGRSPI 57
++ +QG TV Y+W DEE P + ++ + +TR T+GLVT+T TP G + +
Sbjct: 177 FRSTQQGEHTLMGATVDYIWLDEEDPYESMAIFAQCVTRTLTTKGLVTITATPENGLTEL 236
Query: 58 IEHYLSASSSDR----QVIRMTINETP-----HYNEQERKRIIDSYPLHEREARTKGEPI 108
++ ++ + + + H +Q+ K + + P + E R+KG P+
Sbjct: 237 VDKFMKGEGDESTGSLYFQNASWWDAHVDLGGHITDQDIKDMTEGIPAWQLEMRSKGMPL 296
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
LGSG I+ + ++ I +IP+ W ++ +D G HP AA ++ ++D IYV +Y+
Sbjct: 297 LGSGLIYDVSDDTIKCEPFEIPDTWKRVCAIDIGIDHPTAAVWTAYDANTDTIYVYDSYK 356
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
TP++H A+ G+W+P PHD +K SG ++ Y+ G+ + E G
Sbjct: 357 EGGFTPVYHAPAINGRGQWIPVILPHDADNTEKGSGSSVAQFYKNAGVNVQSETFYNKIG 416
Query: 229 SNG-----VEAGISDMLDRMRSGRWKVF 251
+G VE GI+D+ +RM SGR+KVF
Sbjct: 417 MDGKKNFFVEPGITDIRERMMSGRFKVF 444
>gi|49146380|ref|YP_025488.1| putative phage DNA packaging protein Gp2 [Caedibacter
taeniospiralis]
gi|40458348|gb|AAR87096.1| putative phage DNA packaging protein Gp2 [Caedibacter
taeniospiralis]
Length = 474
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 40/285 (14%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRI----NATQGLVTLTLTPLKGRSP 56
K+YEQGR K+Q+ + V DEEPP D+Y E L R +G+V LT+TPL G +
Sbjct: 133 FKSYEQGRKKFQAAKLDLVHLDEEPPRDIYVESLMRTMSTEVDNEGIVLLTMTPLLGLTD 192
Query: 57 IIEHYLSASSS-----------------------------DRQVIRMTINETPHYNEQER 87
+I + + +R I+ + ++ PH + +
Sbjct: 193 LILEFQETTIEREVINGSGVSEMSEMTEEVIKVDEGSIVNNRFYIQASWDDNPHLLDSAK 252
Query: 88 KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPF 147
+ + S HE+EAR G P LGSG ++P+ E +V+N IP+HW ++ G+DFGW +P
Sbjct: 253 ETLSKSLKPHEKEARKHGIPSLGSGLVYPVSEVAVVVNPFVIPKHWGRVFGLDFGWINPT 312
Query: 148 AAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG-KWLPWAWPHDGLQHDKRSGEQ 206
AA V +RD+DV+Y+ Y E+TP HV LK G + + G Q +R G
Sbjct: 313 AALFAVIDRDNDVMYLTGEYYVSERTPQQHVYELKKLGADKINGVYDPAGEQSSQRDGGD 372
Query: 207 LSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
L+ YR G++ L N E GI +L R ++G+ K+F
Sbjct: 373 LAQLYRDSGLRYLY------KADNAKEEGIMKVLQRFQNGKLKIF 411
>gi|24111660|ref|NP_706170.1| putative terminase large subunit [Shigella flexneri 2a str. 301]
gi|24050435|gb|AAN41877.1| putative terminase large subunit [Shigella flexneri 2a str. 301]
gi|313646707|gb|EFS11166.1| DNA packaging gp2 domain protein [Shigella flexneri 2a str. 2457T]
Length = 300
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 113/233 (48%), Positives = 151/233 (64%)
Query: 19 VWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINE 78
+WFDEEPP +Y EGLTR N LT TPL G S ++ +L S ++V+ MTI +
Sbjct: 1 MWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYD 60
Query: 79 TPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGG 138
HY ++++++II SYP HEREAR +G P +GSGRIF I EE I + P+H+ IGG
Sbjct: 61 AEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGG 120
Query: 139 MDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQ 198
MDFGW HP A L W++++D IYV + ++ +E+T + A+KSW +P AWPHDG Q
Sbjct: 121 MDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQ 180
Query: 199 HDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
H+K GEQL QY G ML E AT+ DG N VE GI+++ D M GR+KVF
Sbjct: 181 HEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVF 233
>gi|137993|sp|P16938|VG2_BPLP7 RecName: Full=Protein GP2
gi|75884|pir||Z2BPL7 gene 2 protein - phage LP-7 (fragment)
gi|553003|gb|AAA88220.1| packaging glycoprotein [Enterobacteria phage LP7]
Length = 475
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 106/226 (46%), Positives = 141/226 (62%)
Query: 26 PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQ 85
P +Y EGLTR N LT TPL G S + +L S ++V+ MTI + HY ++
Sbjct: 203 PYSIYAEGLTRTNKYGQFSILTFTPLMGMSDGVTKFLKNPSKSQKVVNMTIYDAEHYTDE 262
Query: 86 ERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHH 145
++++II SYP HEREAR +G P +GSGRIF I EE I + P+H+ I DFGW+H
Sbjct: 263 QKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNH 322
Query: 146 PFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGE 205
P A L W++D+DV Y+ + ++ E T + A+KSW +P AWPHDG QH+K GE
Sbjct: 323 PQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGE 382
Query: 206 QLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
QL QY G MLP+ ATF DG N VE+GIS++ D M GR+KVF
Sbjct: 383 QLKTQYADAGFSMLPDHATFPDGGNSVESGISELRDLMLEGRFKVF 428
>gi|94317806|gb|ABF15069.1| terminase large subunit Gp2 [Salmonella enterica subsp. enterica
serovar Typhimurium]
Length = 278
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 99/215 (46%), Positives = 134/215 (62%)
Query: 37 INATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPL 96
N LT TPL G S ++ +L S ++V+ MTI + HY ++++++II SYP
Sbjct: 1 TNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPE 60
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
HEREAR +G P +GSGRIF I EE I + P+H+ I DFGW+HP A L W++
Sbjct: 61 HEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDK 120
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
D+DV Y+ + ++ E T + A+KSW +P AWPHDG QH+K GEQL QY G
Sbjct: 121 DADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGF 180
Query: 217 KMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
MLP+ ATF DG N VE+GIS++ D M GR+KVF
Sbjct: 181 SMLPDHATFPDGGNSVESGISELRDLMLEGRFKVF 215
>gi|89885991|ref|YP_516188.1| phage terminase large subunit [Sodalis phage phiSG1]
gi|89191726|dbj|BAE80473.1| phage terminase large subunit [Sodalis phage phiSG1]
gi|125470018|gb|ABN42210.1| gp02 [Sodalis phage phiSG1]
Length = 475
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 10/256 (3%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP-PEDVYFEGLTRI----NATQGLVTLTLTPLKGRS 55
+Y QG+ + V + DEEP +Y + LTR G LT TP GR+
Sbjct: 160 FWSYSQGQHALMGDCVDWFHIDEEPRDPTIYPQVLTRTATGDRGKGGRGILTFTPENGRT 219
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
++ ++ S + I + ++ PH +++ + ++ S+P H+R+ RTKG P+LG GRI+
Sbjct: 220 DLVIGFMDNPSPAQTCINVGWDDAPHLSQKVKNDLLASFPAHQRDMRTKGIPMLGHGRIY 279
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ E+ I + +P HW+ I GMDFGW HP A LVW+ ++++ YV + Y+ R+ +P
Sbjct: 280 DLGEDFITCDPFPVPAHWLVIDGMDFGWDHPQAHIQLVWDNENEMFYVTRAYKARQVSPA 339
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+A+ W + +P AWP DGL +K SG Q Y G ML + A + DGS VE
Sbjct: 340 EAYSAVSIWAENVPTAWPSDGLMTEKGSGIQQKTYYDDAGFCMLRDPAQWPDGSRSVE-- 397
Query: 236 ISDMLDRMRSGRWKVF 251
+ D MR G++KVF
Sbjct: 398 ---LHDLMRRGKFKVF 410
>gi|158422463|ref|YP_001523755.1| putative DNA packaging protein GP2 [Azorhizobium caulinodans ORS
571]
gi|158329352|dbj|BAF86837.1| putative DNA packaging protein GP2 [Azorhizobium caulinodans ORS
571]
Length = 251
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 100/183 (54%), Positives = 136/183 (74%)
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLD 128
R I+ T ++ PH +Q++ + + P H R+ARTKG P+LGSGR+FPI EE I+ +++
Sbjct: 3 RFCIQATWDDVPHLTQQQKDELWAAIPAHMRDARTKGIPVLGSGRVFPIAEELILCDAMP 62
Query: 129 IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL 188
IP+HW +I G+DFGW HPF A + W+RD+DVIYVV YR RE++ + H AA++ WGK +
Sbjct: 63 IPKHWARINGLDFGWDHPFGAVSIAWDRDADVIYVVNTYRAREESSVIHAAAIRPWGKKI 122
Query: 189 PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRW 248
P AWPHDG QHDK SG+QL+ QYR G++ML E AT + G NGVEAGI +ML+RM++GR
Sbjct: 123 PCAWPHDGFQHDKGSGQQLAEQYRDHGLEMLDEHATHEQGGNGVEAGIMEMLERMQTGRL 182
Query: 249 KVF 251
KVF
Sbjct: 183 KVF 185
>gi|321225021|gb|EFX50082.1| Phage terminase, large subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
Length = 267
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 93/200 (46%), Positives = 128/200 (64%)
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS 111
G S ++ +L S ++V+ MTI + HY ++++++II SYP HEREAR +G P +GS
Sbjct: 1 MGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGS 60
Query: 112 GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
GRIF I EE I + P+H+ I DFGW+HP A L W++D+DV Y+ + ++ E
Sbjct: 61 GRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSE 120
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
T + A+KSW +P AWPHDG QH+K GEQL QY G MLP+ ATF DG N
Sbjct: 121 NTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNS 180
Query: 232 VEAGISDMLDRMRSGRWKVF 251
VE+GIS++ D M GR+KVF
Sbjct: 181 VESGISELRDLMLEGRFKVF 200
>gi|41179257|ref|NP_958579.1| putative terminase large subunit [Lactobacillus prophage Lj965]
gi|42518398|ref|NP_964328.1| Lj965 prophage terminase large subunit [Lactobacillus johnsonii NCC
533]
gi|39652610|gb|AAK27894.2| putative terminase large subunit [Lactobacillus prophage Lj965]
gi|41582683|gb|AAS08294.1| Lj965 prophage terminase large subunit [Lactobacillus prophage
Lj965]
Length = 424
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 24/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ +FDE P+ + R + T + P +++
Sbjct: 121 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWI 180
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
R + I T+++ P + R Y + +G ++ G I+ ++D
Sbjct: 181 DQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD 240
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP------I 175
++ + D+G +P A R+ V Y+VK Y +T
Sbjct: 241 TMVVNELPNHFEKYYVSCDYGTLNPTAFLLWG--RNHGVWYLVKEYYYSGRTTSRQKTDE 298
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ LK + + S S R+ G K+ N V G
Sbjct: 299 EYCHDLKEFLGDIR------AEMIIDPSAASFSTTLRQNGFKVR-------KAKNDVLDG 345
Query: 236 ISDMLDRMRSGRWK 249
I M G+ K
Sbjct: 346 IRVTQTAMNEGKIK 359
>gi|148557334|ref|YP_001264916.1| hypothetical protein Swit_4440 [Sphingomonas wittichii RW1]
gi|148502524|gb|ABQ70778.1| hypothetical protein Swit_4440 [Sphingomonas wittichii RW1]
Length = 276
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 118/209 (56%), Positives = 145/209 (69%)
Query: 43 LVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR 102
T L + YL + R V RMTI++ HY+ ER I+ SYP HER+AR
Sbjct: 6 PWTWALNAHREGRNHKLVYLWETPMTRHVTRMTIDDAEHYSPAERAAIVASYPAHERKAR 65
Query: 103 TKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+G P+LGSGR+FP+ E+ I I + ++P W QIGG+DFGW HP AA L W+RD+D IY
Sbjct: 66 AEGIPMLGSGRVFPVDEDVIKIRAFEVPAGWTQIGGIDFGWDHPTAAVRLAWDRDADCIY 125
Query: 163 VVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPEC 222
V +Y RE TPI H AALK WG WLPWAWPHDGLQHDK SG L+ QYR QG+ +LPE
Sbjct: 126 VTASYGVREATPILHAAALKPWGNWLPWAWPHDGLQHDKGSGAALAQQYRDQGLSLLPEK 185
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
A+F++G NGVEAGI++MLDRM SGRWKVF
Sbjct: 186 ASFEEGGNGVEAGIAEMLDRMLSGRWKVF 214
>gi|329667176|gb|AEB93124.1| phage terminase large subunit [Lactobacillus johnsonii DPC 6026]
Length = 424
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 24/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ +FDE P+ + R + + + P ++
Sbjct: 121 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVSGAKMWFNCNPSGPYHWFKLDWI 180
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
R + + T+++ P ++ R Y + +G ++ G I+ ++D
Sbjct: 181 DRLKGKRALRLHFTMHDNPSLDKATISRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD 240
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP------I 175
++ + D+G +P A R+ + Y++K Y +T
Sbjct: 241 TMVVNELPNHFEKYYVSCDYGTLNPTAFLLWG--RNHGIWYLIKEYYYSGRTTSRQKTDE 298
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ LK + + S S R+ G K+ N V G
Sbjct: 299 EYCHDLKEFLGNIR------AEMIIDPSAASFSTTLRQNGFKVR-------KAKNDVIDG 345
Query: 236 ISDMLDRMRSGRWK 249
I M G+ K
Sbjct: 346 IRVTQTAMNEGKIK 359
>gi|291543425|emb|CBL16534.1| phage terminase, large subunit, PBSX family [Ruminococcus sp.
18P13]
Length = 432
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 78/255 (30%), Gaps = 23/255 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ ++ DE P + + R + + + P ++
Sbjct: 116 ESSAALIQGITLGGIFLDEVALMPRSFVEQAIARCSISGSRLWFNCNPDHPYHWFYREWI 175
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
++ + T+ + + R R Y + G+ SG ++P+ +D
Sbjct: 176 CKAAEKNALYLHFTMEDNLSLTPRIRARYRRLYAGVFYDRFILGKWTASSGLVYPMFRKD 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPI 175
+ P + D+G +P + +W V Y + Y +T
Sbjct: 236 -THLFTEPPACSRFVVSCDYGTVNPTSM--GLWGESGGVWYRLGEYYYASRQTGISRTDE 292
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
H AL+ S RR G N V +G
Sbjct: 293 EHYTALEQLCSGRTID-----CVVIDPSAASFMECIRRHG------RFRVIPAKNDVLSG 341
Query: 236 ISDMLDRMRSGRWKV 250
I + D ++SGR ++
Sbjct: 342 IRRVSDALKSGRIRI 356
>gi|237795749|ref|YP_002863301.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
Ba4 str. 657]
gi|229261123|gb|ACQ52156.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
Ba4 str. 657]
Length = 502
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 77/256 (30%), Gaps = 24/256 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V FDE P+ + R + + P YL
Sbjct: 129 EGSQDLIQGITLAGVLFDEVALMPQSFANQATARCSVEGAKMWFNCNPDGPYHWFKIEYL 188
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
V T+++ +E+ ++R Y + G L G I+ + ED
Sbjct: 189 DKLKEKNAVHLHFTMDDNLSLSEKVKERYKRMYSGIFYKRYILGLWCLAEGIIYDMFNED 248
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTPI 175
++ +D+G + + Y+VK Y ++ +
Sbjct: 249 FHKVKTISRKYDKYYVSIDYGTQNATVFLLWGL--CNGKWYIVKEYYYSGRDTSLQKSDV 306
Query: 176 FHVAALKSWGKWL-PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ LK + + P D S Q R G K N V
Sbjct: 307 QYSKELKKFLGDIVPVKIIVD------PSAASFIKQLRDDGFK------NILKAKNDVLD 354
Query: 235 GISDMLDRMRSGRWKV 250
GI + + G + V
Sbjct: 355 GIRTVASALSIGLFYV 370
>gi|251777775|ref|ZP_04820695.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082090|gb|EES47980.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 452
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 73/250 (29%), Gaps = 12/250 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V FDE P+ + +R + + P +L
Sbjct: 129 EGSQDLIQGITLAGVLFDEVALMPQSFVNQATSRCSVDGAKMWFNCNPDGPYHWFKTEFL 188
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
V T+++ +E+ ++R Y + G L G I+ + ED
Sbjct: 189 DKLKEKNAVHLHFTMDDNLSLSERVKERYKRMYSGIFYKRYILGLWCLAEGVIYDMFNED 248
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ-TPIFHVAA 180
+ +D+G + +D Y+VK Y + T I
Sbjct: 249 NHKVETIKRRYEKYYVSIDYGTQNATVFLLWGLYQD--KWYIVKEYYYSGRNTGIQKADI 306
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
S S Q R G K +N V GI +
Sbjct: 307 QYSKDLKKFLGDIIPVKIIVDPSAASFIKQLRDDGFK------NILPANNDVLDGIRTVA 360
Query: 241 DRMRSGRWKV 250
+ G + V
Sbjct: 361 SALSIGLFYV 370
>gi|307693548|ref|ZP_07635785.1| Lj965 prophage terminase large subunit [Ruminococcaceae bacterium
D16]
Length = 418
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 24/255 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ Q T+ DE P + R + + + P + ++
Sbjct: 117 ERSAALVQGITLAGALLDEVALMPRSFVEQVCARCSVEGSRLWFSCNPESPAHWFYQEWI 176
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + + + + P + +R + GE + G ++ +D
Sbjct: 177 QKAEEKKVLRLSFAMTDNPSLSPAMLERYRTMFQGAFYRRFVLGEWVNAEGLVYDFFSQD 236
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
+V + D+G +P + +W R + V Y ++ Y R++T
Sbjct: 237 LVREP-PLDVSGPFYVSCDYGTVNPTSM--GLWGRKNGVWYRLEEYYYNSRQARRQKTDQ 293
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ L + K P G S RR+G+ + +N V +G
Sbjct: 294 EYADDLGALVKGRPL-----GAVVVDPSAASFIEVLRRRGVPVR-------KANNDVLSG 341
Query: 236 ISDMLDRMRSGRWKV 250
I ++ G+ +
Sbjct: 342 IRLTARLLKEGKLVI 356
>gi|28210787|ref|NP_781731.1| phage terminase large subunit [Clostridium tetani E88]
gi|28203225|gb|AAO35668.1| phage terminase large subunit [Clostridium tetani E88]
Length = 447
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 76/255 (29%), Gaps = 22/255 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V FDE P+ + R + + P YL
Sbjct: 124 EASQDLIQGITLAGVLFDEVALMPQSFVNQATARCSVDGAKMWFNCNPEGPYHWFKVEYL 183
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ T+N+ +E+ ++R Y + G L G I+ + ED
Sbjct: 184 DNLEYKNGIHLHFTMNDNLSLSEKVKERYKRMYSGIFYKRYILGLWCLAEGVIYDMFNED 243
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTPI 175
++ +D+G + Y+VK Y +T I
Sbjct: 244 FHKVKTVHRKYEKYYVSIDYGTQNATVFLLWGL--CEGKWYIVKEYYYSGRDKSLQKTDI 301
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ LK + + S AQ R G + + N V G
Sbjct: 302 QYSKDLKGFLGDIVPV-----KIIIDPSAASFIAQLRSDGFEQIR------KAKNDVLDG 350
Query: 236 ISDMLDRMRSGRWKV 250
I + + ++V
Sbjct: 351 IRTVASALSLDMFRV 365
>gi|290891580|ref|ZP_06554636.1| hypothetical protein AWRIB429_2026 [Oenococcus oeni AWRIB429]
gi|290478767|gb|EFD87435.1| hypothetical protein AWRIB429_2026 [Oenococcus oeni AWRIB429]
Length = 431
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 75/254 (29%), Gaps = 25/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ +FDE P+ + R + + P +L
Sbjct: 125 ESSQDLVQGITLSGFFFDEVALMPQSFVNQATARCSVENSKLWFNCNPAGPYHWFKVEWL 184
Query: 63 SASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ I T+ + P ++ R+R Y + G ++ G I+ +E+
Sbjct: 185 DQLDKHNTIRIHFTMADNPSLSQAIRERFERMYSGVFYQRYILGLWVMSEGIIYDNFDEN 244
Query: 122 IVINSLDIPEHWV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTP 174
++ H+ D+G +P Y + Y +T
Sbjct: 245 SMVIDPPNDRHYEKYYVSCDYGTLNPTVFLLWGLF--DGTWYCLDEYYYSGRDTQRQKTD 302
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ L + + D S A R++G T N V
Sbjct: 303 EQYADDLDKFLDDVKATIIVD------PSAASFIAVLRKRG-------RTVIKAKNDVLD 349
Query: 235 GISDMLDRMRSGRW 248
GI M +G+
Sbjct: 350 GIRATQTAMNTGKI 363
>gi|322806568|emb|CBZ04137.1| phage terminase large subunit [Clostridium botulinum H04402 065]
Length = 450
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 16/252 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V FDE P+ + R + + + P YL
Sbjct: 127 EGSQDLIQGITLAGVLFDEVALMPQSFVNQATARCSVERAKMWFNCNPDGPYHWFKIEYL 186
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
V T+++ +E+ ++R Y + G L G I+ + ED
Sbjct: 187 DKLKEKNAVHLHFTMDDNLSLSEKVKERYKRMYSGIFYKRYILGLWCLAEGVIYDMFNED 246
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
++ +D+G + + Y++K Y + + +
Sbjct: 247 FHKVKTIPKKYEKYYVSIDYGTQNATVFLLWGL--YNGKWYIIKEYYYSGRDTSLQKSDV 304
Query: 182 ---KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
K +L P + S Q R G K N V GI
Sbjct: 305 QYSKELKNFLGDIVPVKIIV--DPSAASFIKQLRDDGFK------NILKAKNDVIDGIRT 356
Query: 239 MLDRMRSGRWKV 250
+ + + V
Sbjct: 357 VASALNLSLFYV 368
>gi|51512091|gb|AAU05290.1| terminase large subunit [Enterobacteria phage T5]
Length = 438
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 25/257 (9%)
Query: 8 RDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-- 61
D + ++ FDE DV + L L ++ +G + E Y
Sbjct: 140 ADSAVGRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGGNWFKEFYAY 199
Query: 62 -LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + I T + P + + + + + + + + G+IF
Sbjct: 200 GFDDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVFEGQIFDTFNA 259
Query: 121 DIVINSLDIPEHWVQI-------GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ L H+ + G+D G+ P A + ++ D+D YV++ Y+ E+T
Sbjct: 260 TDHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAVLTIKYHYDTDTYYVLEEYQQAEKT 319
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H A ++ D+ + +AQ+R+ + E A+ V
Sbjct: 320 TAQHAAYIQHCIDRYKV---------DRIFVDSAAAQFRQ-DLAYEHEIASAP-AKKSVL 368
Query: 234 AGISDMLDRMRSGRWKV 250
G++ + + G+ V
Sbjct: 369 DGLACLQALFQQGKIIV 385
>gi|182682964|ref|YP_001837088.1| terminase, large subunit [Enterobacteria phage EPS7]
gi|182630676|gb|ACB97608.1| terminase, large subunit [Enterobacteria phage EPS7]
Length = 438
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 92/257 (35%), Gaps = 25/257 (9%)
Query: 8 RDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-- 61
D + ++ FDE DV + L L ++ +G + E Y
Sbjct: 140 ADSAVGRSYDFIIFDEAAISDVGGAAFDIQLRPTLDKPNSKALFISTPRGGNWFKEFYEK 199
Query: 62 -LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + + I T + P + + + + + + + + G+IF
Sbjct: 200 GFNETLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVFEGQIFDTFNA 259
Query: 121 DIVINSLDIPEHWVQI-------GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ L H+ + G+D G+ P A + ++ D+DV YV++ Y+ E+T
Sbjct: 260 IEHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAVLTIKYHYDTDVYYVLEEYQQAEKT 319
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H ++ D D+ + +AQ+R+ + E A+ V
Sbjct: 320 TAQHATYIQH---------CIDRYNVDRIFVDSAAAQFRQ-DLAYEHEIASAP-AKKSVL 368
Query: 234 AGISDMLDRMRSGRWKV 250
G++ + + G+ V
Sbjct: 369 DGLACLQALFQQGKIIV 385
>gi|225017299|ref|ZP_03706491.1| hypothetical protein CLOSTMETH_01225 [Clostridium methylpentosum
DSM 5476]
gi|224949916|gb|EEG31125.1| hypothetical protein CLOSTMETH_01225 [Clostridium methylpentosum
DSM 5476]
Length = 424
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 71/253 (28%), Gaps = 23/253 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ V DE P + + R + + P ++
Sbjct: 118 EGSAALIQGVTLAGVLCDEVALMPRSFVEQAIARCSVAGSKLWFNCNPEHPFHWFYLEWI 177
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + + P + R+R Y E G SG+++P+ +
Sbjct: 178 QKAEEKNALHLHFRMEDNPSLSPALRRRYETLYSGAFYERFVLGHWTAQSGQVYPMFDPA 237
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
+ D+G +P + G + Y + Y +T
Sbjct: 238 RHVVRELPDRFDSYYISCDYGITNPASFGLWGC---NQKWYRIDEYYFDSRREQARRTDE 294
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A L+ S RR G +N V+ G
Sbjct: 295 EYYAELERLAGGREI-----RAVIADPSASSWIECIRRHG------KFRVIPANNDVQRG 343
Query: 236 ISDMLDRMRSGRW 248
IS + D +R G+
Sbjct: 344 ISLVSDALREGKL 356
>gi|326633035|ref|YP_004306624.1| terminase large subunit [Enterobacteria phage SPC35]
gi|321272229|gb|ADW80121.1| terminase large subunit [Enterobacteria phage SPC35]
Length = 438
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 25/257 (9%)
Query: 8 RDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-- 61
D + ++ FDE DV + L L ++ +G + E Y
Sbjct: 140 ADSAVGRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGGNWFKEFYAY 199
Query: 62 -LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + I T + P + + + + + + + + G+IF
Sbjct: 200 GFDDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVFEGQIFDTFNA 259
Query: 121 DIVINSLDIPEHWVQI-------GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ L H+ + G+D G+ P A + ++ D+D YV++ Y+ E+T
Sbjct: 260 IDHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAVLTIKYHYDTDTYYVLEEYQQAEKT 319
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H A ++ D+ + +AQ+R+ + E A+ V
Sbjct: 320 TAQHAAYIQHCIDRYKV---------DRVFVDSAAAQFRQ-DLAYEHEIASAP-AKKSVL 368
Query: 234 AGISDMLDRMRSGRWKV 250
G++ + + G+ V
Sbjct: 369 DGLACLQALFQQGKIIV 385
>gi|312134857|ref|YP_004002195.1| phage terminase, large subunit, pbsx family [Caldicellulosiruptor
owensensis OL]
gi|311774908|gb|ADQ04395.1| phage terminase, large subunit, PBSX family [Caldicellulosiruptor
owensensis OL]
Length = 404
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 20/253 (7%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ + + T+ DE V+ + L R + V T P + Y+
Sbjct: 101 EKAETRIRGLTLAGALCDEVTTYPRSVFEQLLARCSVEGAKVFATTNPDSPYHWLYVDYI 160
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + ++ + P + + I +Y + GE + G I+ + +E
Sbjct: 161 QKADEKGYFVMKFSLEDNPFLPPEYIEFIKKTYTGLFYKRFILGEWVAAEGIIYDMFDEK 220
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE----QTPIFH 177
+ + + I G+DFG +P + + YV+K Y +T +
Sbjct: 221 THVINELSEKFDKHIVGVDFGMQNPTVFLLIGI--KDSIAYVIKEYYHEGREQTKTVDRY 278
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
K W + + S + L Q + G + +N V GI+
Sbjct: 279 SKDFKDWLGDI-----KPSRIYIDPSAQALMQQLKADGFS------NVREANNDVLDGIA 327
Query: 238 DMLDRMRSGRWKV 250
+ + + V
Sbjct: 328 TVSKFLSQQKLFV 340
>gi|238062875|ref|ZP_04607584.1| phage terminase [Micromonospora sp. ATCC 39149]
gi|237884686|gb|EEP73514.1| phage terminase [Micromonospora sp. ATCC 39149]
Length = 428
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 15/252 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + T+ + DE PE + + L R++ + T P + + YL +
Sbjct: 119 KVRGMTLCIAYGDELTTIPEAFFTQVLARLSVAGAQLFGTTNPDSPNHWLRKKYLLRAGE 178
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ + T+ + PH + Q + + Y + G + G +F + +ED +
Sbjct: 179 LNLRTWHSTLRDNPHLDPQYVRNLTTEYVGLWYKRFILGAWVQAEGAVFDMWDEDRHVIP 238
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC------REQTPIFHVAA 180
+ H G+D+G + AA L +D +++ +R R+ T
Sbjct: 239 VLPAIHRWISLGIDYGTRNATAALILGVGQDG-RLHLTHEWRHDPAVARRQLTDAGLSRE 297
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
L++W +P A GL+ + + +A R +++ + T N V GI
Sbjct: 298 LRAWLGRLQVPGATGLTGLRPEWTVVDPAAASLR---LQLHEDGMTPALADNAVLDGIRL 354
Query: 239 MLDRMRSGRWKV 250
M + + + +V
Sbjct: 355 MSSLLGNDQLRV 366
>gi|46401884|ref|YP_006983.1| terminase, large subunit [Enterobacteria phage T5]
gi|45775062|gb|AAS77194.1| terminase, large subunit [Enterobacteria phage T5]
gi|59897286|gb|AAX12081.1| ORF144 [Enterobacteria phage T5]
Length = 438
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 89/257 (34%), Gaps = 25/257 (9%)
Query: 8 RDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-- 61
D + ++ FDE D + L L ++ +G + E Y
Sbjct: 140 ADSAVGRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGGNWFKEFYAY 199
Query: 62 -LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + I T + P + + + + + + + + G+IF
Sbjct: 200 GFDDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVFEGQIFDTFNA 259
Query: 121 DIVINSLDIPEHWVQI-------GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ L H+ + G+D G+ P A + ++ D+D YV++ Y+ E+T
Sbjct: 260 IDHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAVLTIKYHYDTDTYYVLEEYQQAEKT 319
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H A ++ D+ + +AQ+R+ + E A+ V
Sbjct: 320 TAQHAAYIQHCIDRYKV---------DRIFVDSAAAQFRQ-DLAYEHEIASAP-AKKSVL 368
Query: 234 AGISDMLDRMRSGRWKV 250
G++ + + G+ V
Sbjct: 369 DGLACLQALFQQGKIIV 385
>gi|288922855|ref|ZP_06417020.1| hypothetical protein FrEUN1fDRAFT_6718 [Frankia sp. EUN1f]
gi|288345825|gb|EFC80189.1| hypothetical protein FrEUN1fDRAFT_6718 [Frankia sp. EUN1f]
Length = 375
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 23/256 (8%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
+ + T + DE PE+ + + L R + + T P + + + +L
Sbjct: 118 RLRGLTCAGAYADELTLLPEEFFQQLLARCSVPGAKIFGTTNPDGPQHWLRKKFLLRVGD 177
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T+++ P + + + Y + G+ ++ G I+ + +ED +
Sbjct: 178 LDLATWHFTLDDNPALDPTYVENLKKEYVGLWYKRFILGQWVMAEGAIYDMWDEDTHLVD 237
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPIFHVAA 180
G+D+G +PF+ L D +Y+ +R R T +
Sbjct: 238 RLPSIERWLALGVDYGTVNPFSGLLLGLGND-RRLYLTHEWRWDSKLERRSLTDSQYSTR 296
Query: 181 LKSW------GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
++ W G P + D S Q G+ A G N V +
Sbjct: 297 VREWLTALDLGMNAPARVDPEWFIVD-PSAASFKTQLFSDGV------ANVMGGDNDVVS 349
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + R +V
Sbjct: 350 GIRTVASLLGNDRLRV 365
>gi|116492550|ref|YP_804285.1| Phage terminase large subunit [Pediococcus pentosaceus ATCC 25745]
gi|116102700|gb|ABJ67843.1| Phage terminase large subunit [Pediococcus pentosaceus ATCC 25745]
Length = 423
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 43/254 (16%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ + G + P +++
Sbjct: 123 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARVSVSGGKYWFNMNPEGPYHWFKLNWI 182
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
R + I + + P +E R +Y + G ++ G I+ +
Sbjct: 183 DDLKGKRALRIHFRMEDNPSLSEDVIGRYKRNYSGVFYQRYILGLWVMSEGVIYDNFNRE 242
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
++ S +D+G +P L+W + V Y +K Y R++T
Sbjct: 243 TMVVSEPPGRCTKYYVSVDYGTQNPT--VFLLWGFYNGVWYCLKEYYYDGRHSARQKTDD 300
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ L + + + S A R + +++ N V G
Sbjct: 301 QYANDLDEFVGNI------NARIIIDPSAASFIAVLRNRHYRIIR-------ADNDVLNG 347
Query: 236 ISDMLDRMRSGRWK 249
I + M +G K
Sbjct: 348 IRETQSAMNNGLIK 361
>gi|268608029|ref|ZP_06141759.1| phage terminase large subunit [Ruminococcus flavefaciens FD-1]
Length = 415
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 23/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ V+ DE P + L R + + + P ++
Sbjct: 116 EGSAALIQGMTLSGVFLDEAALMPRSFVEQALARCSVSGSKMWFNCNPDNPAHWFYTEWI 175
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ I T+++ P ++ ++R Y + G+ G ++P+ E
Sbjct: 176 KKAEEKHALYIHFTMDDNPSLSDALKQRYKRLYSGAFYDRFVLGKWTASQGVVYPMFSEK 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ------TPI 175
+ S D+ E + D+G +P + +W V Y + Y + T
Sbjct: 236 KHVYSGDV-ECERFVISCDYGTVNPSS--FGLWGLSGGVWYRLSEYYYSSKREGVSRTDE 292
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
H AAL+ S RR G N V G
Sbjct: 293 EHYAALERLAGGREI-----SRVIVDPSAASFIECIRRHG------RFRVVKADNDVITG 341
Query: 236 ISDMLDRMRSGRWK 249
I ++ + R +
Sbjct: 342 IRNVSTALSENRLR 355
>gi|264678784|ref|YP_003278691.1| phage DNA packaging protein Gp2 [Comamonas testosteroni CNB-2]
gi|262209297|gb|ACY33395.1| putative phage DNA packaging protein Gp2 [Comamonas testosteroni
CNB-2]
Length = 434
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 12/221 (5%)
Query: 35 TRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD----RQVIRMTINETPHYNEQERKRI 90
R+ +G+ LT TPL G + +++ S R V++ ++ PH E+ + ++
Sbjct: 1 MRLMTREGISMLTFTPLSGLTALVQQLTSPDPEGKVIGRAVVQCGWDDVPHLTEEAKAKL 60
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAG 150
+ H+R+ARTKG P LG+G I+P+ E DIV+ +P+ W + GMD GW + +A
Sbjct: 61 LSRLMPHQRDARTKGVPALGAGAIYPVPESDIVVPDFQLPDFWPRAYGMDVGW-NRTSAV 119
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
+RDSD++Y+ N+ + P H ++K+ G W+P A ++ GEQL
Sbjct: 120 WGAHDRDSDIVYLYSNHYRGQAEPSVHATSIKARGDWIPGAIDPASRGRSQKDGEQLLQN 179
Query: 211 YRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
Y G++++ +NGVEAGI + +RM +GR KVF
Sbjct: 180 YVDLGLQLVT-------ANNGVEAGIYQVWERMSTGRLKVF 213
>gi|317055978|ref|YP_004104445.1| phage terminase large subunit, PBSX family [Ruminococcus albus 7]
gi|315448247|gb|ADU21811.1| phage terminase, large subunit, PBSX family [Ruminococcus albus 7]
Length = 409
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/255 (16%), Positives = 76/255 (29%), Gaps = 22/255 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ + DE P + + R + + P ++
Sbjct: 112 EASSALIQGVTLAGILLDETALMPRSFVEQAVARCSVRGSKLWFNCNPDNPYHWFKREWI 171
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
++ I + + P +E+ ++R Y E G G I+P+ +E
Sbjct: 172 DKAAEKNLLYIHFELKDNPSLSEEVKRRYERLYSGAFYERFVLGRWSAAEGLIYPMFDEK 231
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
+ + D+G +P + +W D+ Y + Y +T
Sbjct: 232 KYVCDKAPDDCERFAVSCDYGTVNPSS--FGLWGLKDDIWYRIGEYYYDSAKEGSRRTDE 289
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
H AL+ + + D S RR G N V G
Sbjct: 290 EHYDALEELAGDRDIDY----VVCD-PSAASFIQCIRRHG------KFRVIQAKNDVVTG 338
Query: 236 ISDMLDRMRSGRWKV 250
I D +R GR +
Sbjct: 339 IRRTQDMIRGGRLMI 353
>gi|294478923|gb|ADE87488.1| large subunit terminase [Deep-sea thermophilic phage D6E]
Length = 427
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 20/249 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++FDE PE + R + + P YL
Sbjct: 125 ESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEYL 184
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ T+++ ++Q ++R Y + G +L G I+ + ++D
Sbjct: 185 DKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQD 244
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNY------RCREQTPI 175
+ + D+G +P +W + V Y VK Y +++T
Sbjct: 245 EHVVPTVPRPYEKYYVSCDYGTQNPTT--FGLWGLYNGVWYKVKEYHYDGRKENKQKTDQ 302
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ L + + + + S A R++G+K++ N V G
Sbjct: 303 EYYEDLMKFIEDIEKHKFKGVIV--DPSAASFIALLRQKGIKVI-------KAKNDVLDG 353
Query: 236 ISDMLDRMR 244
I ++ +
Sbjct: 354 IRNVATALN 362
>gi|326791841|ref|YP_004309662.1| phage terminase, large subunit, PBSX family [Clostridium
lentocellum DSM 5427]
gi|326542605|gb|ADZ84464.1| phage terminase, large subunit, PBSX family [Clostridium
lentocellum DSM 5427]
Length = 434
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 78/260 (30%), Gaps = 28/260 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ +D Q T+ +FDE PE + R + P +++
Sbjct: 125 ERSQDLIQGITLAGCFFDEVALMPESFVNQATGRCSVDGSKFWFNCNPDGPYHWFKVNWI 184
Query: 63 SASSSDR-QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP-IVEE 120
+ T+++ E+ ++R Y + KG + G I+ +E
Sbjct: 185 DKQVEKNLLYLHFTMDDNLSLTEKIKQRYRSMYSGVFYDRYIKGLWAVAEGIIYDMFHKE 244
Query: 121 DIVINSLDIPEH-----WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE---- 171
+++ ++ + + +D+G +P D + Y + Y
Sbjct: 245 KHIVDVQELIANGLTFLGEKYVSIDYGTQNPTVFLLWELASDKN-WYCTREYHYSGRSEA 303
Query: 172 --QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+T +V L W D ++ +L +
Sbjct: 304 SQKTDSEYVEDLTE--------WLGDTQVRFVIVDPSAASFIAE----LLKHKFKVKKAN 351
Query: 230 NGVEAGISDMLDRMRSGRWK 249
N V GI + + G+
Sbjct: 352 NSVLDGIRLVATLLTEGKIF 371
>gi|291544739|emb|CBL17848.1| phage terminase, large subunit, PBSX family [Ruminococcus sp.
18P13]
Length = 414
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 21/255 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ + DE P + R + + + P + ++
Sbjct: 115 ESSAALIQGITLAGAFLDEVALMPRSFVEQAAARCSVSGSRLWFNCNPDSAEHWFYKEWI 174
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV-EE 120
+ + T+ + +++ R+R Y + KG + G ++P +
Sbjct: 175 CKKTEKNALHLHFTMQDNYALDKKIRERYERLYTGVFYDRYIKGLWCMAEGLVYPNWSDR 234
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ-----TPI 175
++ + + ++ +D+G +PF+AG + + I V + Y ++ T
Sbjct: 235 YVLHGDIRLSQNVEWYIAIDYGTINPFSAGLWAVSP-RNAIRVAEYYYNSKEERTMRTDE 293
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
H AAL+ P S RR G T N V G
Sbjct: 294 EHYAALEQLAGDRPIQ-----HVIVDPSAASFIECIRRHG------RFTVRKAHNEVLPG 342
Query: 236 ISDMLDRMRSGRWKV 250
IS +++GR +
Sbjct: 343 ISRTATLIQNGRILI 357
>gi|326775607|ref|ZP_08234872.1| phage terminase, large subunit, PBSX family [Streptomyces cf.
griseus XylebKG-1]
gi|326655940|gb|EGE40786.1| phage terminase, large subunit, PBSX family [Streptomyces cf.
griseus XylebKG-1]
Length = 416
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/253 (18%), Positives = 87/253 (34%), Gaps = 18/253 (7%)
Query: 8 RDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
++ + T DE P++ + + L R++ + + P + ++
Sbjct: 114 EERLRGMTCAGALVDEATLVPQEFWTQLLGRMSVPGAKLFASTNPGSPAHWLKRDFIDRR 173
Query: 66 SS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ +++ P + + I + + GE I G IF + +E+ +
Sbjct: 174 DELGIRYWHYVLDDNPSLGDDYKNSIKNEFVGLWYRRFVLGEWIAAEGSIFDMWDEEKHV 233
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPIFHV 178
G+D+G +PF A L RD +Y +R R+ T I +
Sbjct: 234 VDTLPEIAKWISVGVDYGQTNPFHATLLGLGRD-RRLYAASEWRYDGRQQRRQLTDIEYS 292
Query: 179 AALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ W + P S SAQ RR + T +N V GI
Sbjct: 293 ERMRGWLSNVAGIGPVRPQFVTVDPSAASFSAQLRR-------DRLTPTPANNAVLDGIR 345
Query: 238 DMLDRMRSGRWKV 250
M + +G+ V
Sbjct: 346 TMASLLSAGKLVV 358
>gi|291541718|emb|CBL14828.1| phage terminase, large subunit, PBSX family [Ruminococcus bromii
L2-63]
Length = 419
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 73/255 (28%), Gaps = 23/255 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ V FDE P + L R + + P ++
Sbjct: 117 ESSASLIQGMTLSGVLFDEVALMPRSFVEQALARCSVSGSRFWFNCNPEFPEHWFYREWI 176
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ T+ + P + KR Y E KG + G ++P ++ +
Sbjct: 177 KKCGDKNALYLHFTMQDNPSLKPEVIKRYESLYSGVFYERFVKGRWVAVFGAVYPFMDNE 236
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPI 175
+ + D+G +P + +W R + V Y V Y ++T
Sbjct: 237 RMYCDIPSDIESW-AVSCDYGTVNPAS--FGLWGRKNGVWYRVDEYYFNSRTQGFQKTDE 293
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
H L+ S RR G T N V G
Sbjct: 294 EHYDGLEKLIDGRKI-----ECVIVDPSAASFIEVIRRHG------KYTVVSAENNVING 342
Query: 236 ISDMLDRMRSGRWKV 250
I ++ + ++
Sbjct: 343 IRQTSQALKDRKIRI 357
>gi|121534831|ref|ZP_01666651.1| protein of unknown function DUF264 [Thermosinus carboxydivorans
Nor1]
gi|121306626|gb|EAX47548.1| protein of unknown function DUF264 [Thermosinus carboxydivorans
Nor1]
Length = 845
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/300 (14%), Positives = 87/300 (29%), Gaps = 63/300 (21%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGR---SPIIE 59
++Q + Y+ FDE D +Y R + + G +
Sbjct: 483 DELRYQGHEYQYIAFDELTHFDERQYLYLLSRCRTSDPALRCYVRAASNPGGPGHHWVKA 542
Query: 60 HYLSASSSD-----------RQVIRMTINETPHY--NEQERKRIIDSYPLHEREARTKGE 106
++ + R + + + P + + ++S P ER+A G+
Sbjct: 543 RFIDVAPPGKTYVDPVTGLTRCFVPARVFDNPILLRADPLYLKRLESLPEAERKALLLGD 602
Query: 107 PILGSGRIFPIVEED-IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
+G++F D V+ IP W++ MD+G+ P+ + + VIYV +
Sbjct: 603 WDAFAGQVFSEWRRDVHVVEPFAIPAGWLRFRAMDWGFSKPYCILWFAVDY-NGVIYVYR 661
Query: 166 NYRC---------REQTPIFHVAALKSWGKWL--------------------PWAWPHDG 196
++T +K+ W
Sbjct: 662 ELYGLKPGCVDVGTQETAREVAQKVKAAEDWKNFIADEGVKLETQLSGEKIAYGVADPAC 721
Query: 197 LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM-----RSGRWKVF 251
G ++ + +G+ P N G + R+ KVF
Sbjct: 722 WAKTGHDGPSIAETFASEGVFWKP-------ADNDRLQGKMQVHLRLRGWGPERPGLKVF 774
>gi|167771112|ref|ZP_02443165.1| hypothetical protein ANACOL_02466 [Anaerotruncus colihominis DSM
17241]
gi|167666782|gb|EDS10912.1| hypothetical protein ANACOL_02466 [Anaerotruncus colihominis DSM
17241]
Length = 434
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 23/253 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ V FDE P + L R + + + P + ++
Sbjct: 118 EGSAALIQGATLSGVLFDEAALMPRSFVEQALARCSDERARFWFSCNPEHPQHWFYTEWI 177
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + T+ + P +E +R Y + G+ G ++P+ +
Sbjct: 178 LQAHEKSALYLHFTMRDNPSLSEAVLRRYERLYAGTFYDRFVLGKWTAAQGAVYPMFDPA 237
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTPI 175
+ + P+ D+G +P + +W V Y + Y +T
Sbjct: 238 VHV-VEHAPQCGRFYISCDYGTVNPAS--FGLWGESGGVWYRIAEYYHDSRRTGEVKTDE 294
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ AL + S A RR G N V G
Sbjct: 295 QYYEALAALAGERRVEAVIV-----DPSAASFIACIRRHG------RFRVVPARNEVAEG 343
Query: 236 ISDMLDRMRSGRW 248
I + R+R R
Sbjct: 344 IQAVSRRLREKRL 356
>gi|268608995|ref|ZP_06142722.1| Phage terminase large subunit [Ruminococcus flavefaciens FD-1]
Length = 421
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 81/255 (31%), Gaps = 22/255 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQG-LVTLTLTPLKGRSPIIEHY 61
E Q T+ V FDE PE + + R + G + + P ++
Sbjct: 115 EASYKLVQGITLAGVLFDEVALMPESFVNQAIARTLSVSGAKLWFSCNPDSPAHWFYTNW 174
Query: 62 LSASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + + I + + P ++ +R ++ + G+ ++ G ++ + +
Sbjct: 175 ILKAQEKNALRIHFRMEDNPVMTPEKIRRTESTFSGVFYQRYVLGDWVVAEGLVYTMFDR 234
Query: 121 -DIVINSLDIPEHW---VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ---- 172
+ + N+ D+ +D+G +P + G + + ++Y +
Sbjct: 235 AEHIFNAGDLTVDPVAGDMFISIDYGTKNPTSMGLWYVDISGHAWRIRESYYDGRKGGSP 294
Query: 173 -TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
T H A L+ + S RR G N
Sbjct: 295 RTDEEHYAELERLAGEYTDFIGSVIV---DPSAASFIECIRRHG------TFRVRKADND 345
Query: 232 VEAGISDMLDRMRSG 246
V GI D ++ G
Sbjct: 346 VIDGIRDTQTLLQLG 360
>gi|160934785|ref|ZP_02082171.1| hypothetical protein CLOLEP_03660 [Clostridium leptum DSM 753]
gi|156866238|gb|EDO59610.1| hypothetical protein CLOLEP_03660 [Clostridium leptum DSM 753]
Length = 420
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 75/250 (30%), Gaps = 24/250 (9%)
Query: 11 WQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS- 67
Q T+ + DE P + L R + P R E ++
Sbjct: 123 IQGITLAGILLDEVALMPRSFVEQALARCSVEGSKFWFNCNPEHPRHWFYEEWIQKRDEK 182
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSL 127
+ + + + P +E+ +R Y + +G + G ++P +EE
Sbjct: 183 NAYYLHFRMEDNPSLSEKMIERYRGLYSGSFYQRFIEGRWVAAEGLVYPFMEEPDRFLPP 242
Query: 128 DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTPIFHVAAL 181
I D+G +P + +W R V Y +K Y +T H L
Sbjct: 243 PEGPFEEFIVSCDYGTVNPAS--FGLWGRKEGVWYRLKEYYYDSKRDGGPKTDEEHYQGL 300
Query: 182 KS-WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
S G P D S RR G N V GI +
Sbjct: 301 VSLLGARRPRCVIVD------PSAASFQEVIRRHG------EYRVIPAKNNVLDGIRQVS 348
Query: 241 DRMRSGRWKV 250
++ G ++
Sbjct: 349 TALKEGAVEI 358
>gi|310658835|ref|YP_003936556.1| terminase, large subunit [Clostridium sticklandii DSM 519]
gi|308825613|emb|CBH21651.1| Terminase, large subunit [Clostridium sticklandii]
Length = 429
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 77/249 (30%), Gaps = 15/249 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ +D Q T+ +FDE PE + R + P ++
Sbjct: 124 ERSQDLVQGITLAGCFFDEVALMPESFVNQATGRCSVDGSKWWFNCNPNGPFHWFKTDWI 183
Query: 63 SASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + T+++ +E+ ++R Y + G +L G I+ + ED
Sbjct: 184 DKAIDKNILYLHFTMDDNLSLSEKIKERYRKMYSGVFFKRYILGLWVLAEGIIYDMFTED 243
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE--QTPIFHVA 179
I + D+G +P ++ Y VK Y + +
Sbjct: 244 DHIVPSKDRTYSKFYVSCDYGTQNPTT--FGMYGEYLGKWYKVKEYYYSGRKEGKQKTDS 301
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ + +G+ D + ++ + N V GI +
Sbjct: 302 EFADDYEKFIEGYEVEGIIVDPSAASFIAE--------LRKRNHRVIKAKNDVLDGIRSV 353
Query: 240 LDRMRSGRW 248
++ G +
Sbjct: 354 GTLLKMGVF 362
>gi|191638099|ref|YP_001987265.1| Putative phage terminase large subunit B [Lactobacillus casei BL23]
gi|190712401|emb|CAQ66407.1| Putative phage terminase large subunit B [Lactobacillus casei BL23]
gi|327385325|gb|AEA56799.1| hypothetical protein LCBD_1302 [Lactobacillus casei BD-II]
Length = 417
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/254 (16%), Positives = 84/254 (33%), Gaps = 25/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++FDE P+ + R++ T G + P ++
Sbjct: 116 ESSQDLIQGITLAGMFFDEAALMPQSFVNQATARVSVTGGKYWFNMNPEGPYHWFKTDWI 175
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ R + + + + P +++ R Y + G+ +L G ++ +D
Sbjct: 176 DQADEKRALRLHFVMTDNPSLSDEVIDRYEHMYSGVFYQRYILGQWVLADGIVYDNFNKD 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC------REQTPI 175
++++ +D+G +P L+W + V Y +K Y R++T
Sbjct: 236 EMVSNPSQQPS-RYYVSVDYGTQNPT--VFLLWGKCGSVWYCLKEYYYDGRHSSRQKTDD 292
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + D S + R N V G
Sbjct: 293 EYARDFSQFVGDIRCEVIVD------PSAASFITKLRE-------RRYRVIKADNDVLNG 339
Query: 236 ISDMLDRMRSGRWK 249
I + M SG K
Sbjct: 340 IRETQTAMNSGEIK 353
>gi|225871048|ref|YP_002746995.1| phage terminase, large subunit [Streptococcus equi subsp. equi
4047]
gi|225700452|emb|CAW94859.1| putative phage terminase, large subunit [Streptococcus equi subsp.
equi 4047]
Length = 415
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 84/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S V V +E D Y + R+ + + L P+
Sbjct: 105 FKGLD-NPEKIKSIKGVSDVVMEEASEFTLDDYTQLTLRLRDRKHLKKQIFLMFNPVSKV 163
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 164 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDK 223
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + I + D H G+D+G+ + P A H+ + ++ +Y+++ Y + T
Sbjct: 224 LIFPKYEKKILNKDKLSHLPSFFGLDYGFINDPSAFLHVKIDDNNKKLYILEEYVRKNLT 283
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 284 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRIIDVKKGPGSVM 333
Query: 234 AGISDMLD 241
GI +L
Sbjct: 334 QGIQYLLQ 341
>gi|116495400|ref|YP_807134.1| Phage terminase large subunit [Lactobacillus casei ATCC 334]
gi|89953853|gb|ABD83384.1| phage terminase large subunit [Lactobacillus casei ATCC 334]
gi|116105550|gb|ABJ70692.1| Phage terminase large subunit [Lactobacillus casei ATCC 334]
Length = 417
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 25/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++FDE P+ + R++ T G + P ++
Sbjct: 116 ESSQDLIQGITLAGMFFDEAALMPQSFVNQATARVSVTGGKYWFNMNPEGPYHWFKTDWI 175
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ R + + + + P +++ R Y + G+ +L G ++ ++D
Sbjct: 176 DQADDKRALRLHFVMTDNPSLSDEVIDRYEHMYSGVFYQRYILGQWVLADGIVYDNFDKD 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC------REQTPI 175
++++ +D+G +P L+W + V Y +K Y R++T
Sbjct: 236 EMVSNPSQQPS-RYYVSVDYGTQNPT--VFLLWGKCGSVWYCLKEYYYDGRHSSRQKTDD 292
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + D ++ +K+ N V G
Sbjct: 293 EYARDFSQFVGDIRCEVIVD---------PSAASFI----VKLRERRYRVIKADNDVLNG 339
Query: 236 ISDMLDRMRSGRWK 249
I + M SG K
Sbjct: 340 IRETQTAMNSGEIK 353
>gi|323480189|gb|ADX79628.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
62]
Length = 429
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 70/249 (28%), Gaps = 13/249 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 127 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 186
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE-E 120
+ + I T+ + P +E+ R Y + +G +L G IF + E
Sbjct: 187 DKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDAE 246
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+V +D+G + + + Y + Y + +
Sbjct: 247 TMVKEPPKNAIASQYYVSIDYGTQNATVFLLWA--KYEENWYCIDEYYYSGRDESKQKSD 304
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
K + S A R G K++ N V GI
Sbjct: 305 DKYLKDLNSFVEGKKVKIIVDPSAASFIALLRENGYKVI-------KAKNNVIDGIRATQ 357
Query: 241 DRMRSGRWK 249
M G+
Sbjct: 358 TAMNEGKIY 366
>gi|293382499|ref|ZP_06628433.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
R712]
gi|293387900|ref|ZP_06632439.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
S613]
gi|312906897|ref|ZP_07765894.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 512]
gi|312978848|ref|ZP_07790574.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 516]
gi|291080047|gb|EFE17411.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
R712]
gi|291082747|gb|EFE19710.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
S613]
gi|310627151|gb|EFQ10434.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 512]
gi|311288285|gb|EFQ66841.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 516]
Length = 430
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 70/249 (28%), Gaps = 13/249 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 128 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 187
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE-E 120
+ + I T+ + P +E+ R Y + +G +L G IF + E
Sbjct: 188 DKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDAE 247
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+V +D+G + + + Y + Y + +
Sbjct: 248 TMVKEPPKNAIASQYYVSIDYGTQNATVFLLWA--KYEENWYCIDEYYYSGRDESKQKSD 305
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
K + S A R G K++ N V GI
Sbjct: 306 DKYLKDLNSFVEGKKVKIIVDPSAASFIALLRENGYKVI-------KAKNNVIDGIRATQ 358
Query: 241 DRMRSGRWK 249
M G+
Sbjct: 359 TAMNEGKIY 367
>gi|257415566|ref|ZP_05592560.1| phage terminase large subunit [Enterococcus faecalis AR01/DG]
gi|257157394|gb|EEU87354.1| phage terminase large subunit [Enterococcus faecalis ARO1/DG]
Length = 429
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 70/249 (28%), Gaps = 13/249 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 127 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 186
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE-E 120
+ + I T+ + P +E+ R Y + +G +L G IF + E
Sbjct: 187 DKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDAE 246
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+V +D+G + + + Y + Y + +
Sbjct: 247 TMVKEPPKNAIASQYYVSIDYGTQNATVFLLWA--KYEENWYCIDEYYYSGRDESKQKSD 304
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
K + S A R G K++ N V GI
Sbjct: 305 DKYLKDLNSFVEGKKVKIIVDPSAASFIALLRENGYKVI-------KAKNNVIDGIRATQ 357
Query: 241 DRMRSGRWK 249
M G+
Sbjct: 358 TAMNEGKIY 366
>gi|167746088|ref|ZP_02418215.1| hypothetical protein ANACAC_00783 [Anaerostipes caccae DSM 14662]
gi|167654603|gb|EDR98732.1| hypothetical protein ANACAC_00783 [Anaerostipes caccae DSM 14662]
Length = 421
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 22/251 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ +D Q T+ V+FDE PE + R + P +++
Sbjct: 126 ERSQDLIQGITLAGVFFDEVALMPESFVNQATGRCSVDGSKFWFNCNPDGPYHWFKTNWI 185
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ R V T+ + E+ + R Y + G + G IF + + +
Sbjct: 186 DRAEEKRLVYLHFTMEDNLSLTERIKARYRSMYSGVFYKRYILGLWAVAEGIIFDMFDAE 245
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTPI 175
I + + +D+G + N K Y +T
Sbjct: 246 KHIVNGSQESIGSRYISIDYGTQNATVFLLWGKNLKG-KWICSKEYYYSGRDESSQKTDS 304
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ L+ + K + + + D + A+ +++G ++ N V G
Sbjct: 305 EYADDLEEFTKGIDI----ERVIVDPAAA-SFIAELKKRGFRI-------KKAKNDVLDG 352
Query: 236 ISDMLDRMRSG 246
I + + + G
Sbjct: 353 IRFVGNMLNLG 363
>gi|30061788|ref|NP_835959.1| putative terminase large subunit [Shigella flexneri 2a str. 2457T]
gi|30040030|gb|AAP15764.1| putative terminase large subunit [Shigella flexneri 2a str. 2457T]
Length = 186
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 87/184 (47%), Positives = 120/184 (65%)
Query: 19 VWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINE 78
+WFDEEPP +Y EGLTR N LT TPL G S ++ +L S ++V+ MTI +
Sbjct: 1 MWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYD 60
Query: 79 TPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGG 138
HY ++++++II SYP HEREAR +G P +GSGRIF I EE I + P+H+ IGG
Sbjct: 61 AEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGG 120
Query: 139 MDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQ 198
MDFGW HP A L W++++D IYV + ++ +E+T + A+KSW +P AWPHDG Q
Sbjct: 121 MDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQ 180
Query: 199 HDKR 202
H+K
Sbjct: 181 HEKG 184
>gi|239631319|ref|ZP_04674350.1| phage terminase large subunit [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239525784|gb|EEQ64785.1| phage terminase large subunit [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 417
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/254 (16%), Positives = 84/254 (33%), Gaps = 25/254 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++FDE P+ + R++ T G + P ++
Sbjct: 116 ESSQDLIQGITLAGMFFDEAALMPQSFVNQATARVSVTGGKYWFNMNPEGPYHWFKTDWI 175
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ R + + + + P +++ R Y + G+ +L G ++ +D
Sbjct: 176 DQADDKRALRLHFVMTDNPSLSDEVIDRYEHMYSGVFYQRYILGQWVLADGIVYDNFNKD 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC------REQTPI 175
++N+ +D+G +P L+W + V Y +K Y R++T
Sbjct: 236 GMVNNPSQQPS-RYYVSVDYGTQNPT--VFLLWGKCGSVWYCLKEYYYDGRHSSRQKTDD 292
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + D S + R N V G
Sbjct: 293 EYARDFSQFVGDIHCEVIVD------PSAASFITKLRE-------RRYRVIKADNDVLNG 339
Query: 236 ISDMLDRMRSGRWK 249
I + M SG K
Sbjct: 340 IRETQTAMNSGEIK 353
>gi|289434977|ref|YP_003464849.1| phage terminase large subunit [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171221|emb|CBH27763.1| phage terminase large subunit [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 430
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 26/255 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++FDE P+ + + R++ P ++
Sbjct: 127 ESSQDLIQGITLAGMFFDEVALMPKSFVEQAIARLSIDGAKQWFNCNPDSPYHWFKLEFI 186
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + ++ T+++ +E+ ++R S+ + G ++ G I+ + +D
Sbjct: 187 DGAEEKQMLVLHFTMDDNLSLSERVKERYKRSFTGIFYQRYILGLWVMAEGVIYDMFNKD 246
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAA-GHLVWNRDSDVIYVVKNYRCRE------QTP 174
+ + + D+G +PFA +++ V Y V+ Y +T
Sbjct: 247 KHVVKTEDRPYTRYYISCDYGTQNPFALGLWGLYD---GVWYKVREYHYGGREKGIQRTD 303
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ AL + L D S R++G K++ N V
Sbjct: 304 EQYFTALDDFANRLTKKVIID------PSATSFITLVRQKGWKVI-------KAKNDVLE 350
Query: 235 GISDMLDRMRSGRWK 249
GI ++ + K
Sbjct: 351 GIRNVASCLGEESIK 365
>gi|315032537|gb|EFT44469.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0017]
Length = 427
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 70/249 (28%), Gaps = 13/249 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 128 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 187
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE-E 120
+ + I T+ + P +E+ R Y + +G +L G IF + E
Sbjct: 188 DKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDAE 247
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+V +D+G + + + Y + Y + +
Sbjct: 248 TMVKEPPKNAIASQYYVSIDYGTQNATVFLLWA--KYEENWYCIDEYYYSGRDESKQKSD 305
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
K + S A R G K++ N V GI
Sbjct: 306 DKYLKDLNSFVEGKKVKIIVDPSAASFIALLRENGYKVI-------KAQNNVIDGIRATQ 358
Query: 241 DRMRSGRWK 249
M G+
Sbjct: 359 TAMNEGKIY 367
>gi|154496017|ref|ZP_02034713.1| hypothetical protein BACCAP_00300 [Bacteroides capillosus ATCC
29799]
gi|150274900|gb|EDN01956.1| hypothetical protein BACCAP_00300 [Bacteroides capillosus ATCC
29799]
Length = 415
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 77/255 (30%), Gaps = 25/255 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ V DE P + R + + P + ++
Sbjct: 115 EGSAALIQGVTLAGVLLDEVALMPRSFVEQACARCSVAGSRLWFNCNPEGPEHWFYKEWI 174
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ R + T+ + P + + R + GE + GR++ +E
Sbjct: 175 QKAEERRALYLHFTMEDNPGLRPEVKARYGRMFSGAFYRRFVLGEWVAAEGRVYDFFDES 234
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
+ D W D+G +P + G W + Y VK + R++T
Sbjct: 235 YLEEPPDGLSRW--CISCDYGTVNPASFGLWGW--KDGIWYRVKEFYYNSRETKRQKTDG 290
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ L+ + S RR+G ++L N V +G
Sbjct: 291 EYAQDLRELAGGRDI-----WMVVVDPSAASFIEVLRREGWRVL-------KAENDVLSG 338
Query: 236 ISDMLDRMRSGRWKV 250
I +R + +
Sbjct: 339 IRTTAGLLREKKLVI 353
>gi|39653713|ref|NP_945278.1| terminase, large subunit [Streptococcus phage EJ-1]
gi|38638881|emb|CAE82121.1| terminase, large subunit [Streptococcus phage EJ-1]
Length = 421
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 23/256 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++FDE PE +G R + T P +++
Sbjct: 127 ESSQDLIQGLTLAGIFFDEVALMPESFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVNWI 186
Query: 63 SA-SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV-EE 120
+ + + +++ +E +KR Y + +G + G ++ + ++
Sbjct: 187 DKAETKNMLYLHFDMDDNLSLSENIKKRYRSQYQGVFYQRYIQGLWTVAEGIVYDMFSKD 246
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTP 174
V+++L + +D+G + + Y+ + Y +T
Sbjct: 247 KHVVSTLPEMSKLGKYVSVDYGTQNATVFLLWEKDIIG-KYYLTREYYYSGRDENVQKTN 305
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ L +W D + D S A+ +++G K+ N V
Sbjct: 306 AEYADDLTAWLGDTNI----DRIIID-PSAASFIAELKKRGYKI-------KKARNNVLE 353
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + V
Sbjct: 354 GIRFVGSMLGQEKIAV 369
>gi|310828790|ref|YP_003961147.1| hypothetical protein ELI_3215 [Eubacterium limosum KIST612]
gi|308740524|gb|ADO38184.1| hypothetical protein ELI_3215 [Eubacterium limosum KIST612]
Length = 441
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 83/273 (30%), Gaps = 42/273 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ +D Q T+ V+FDE PE + R + P +++
Sbjct: 124 ERSQDLIQGITLAGVFFDEVALMPESFVNQATGRCSVDGSKFWFNCNPDGPYHWFKLNWI 183
Query: 63 SASS------------------SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
+ D + T+ + +E+ + R Y +
Sbjct: 184 DQCTGYLTRKQQEELRNKNIELKDILYLHFTMEDNLSLSEKIKARYRAMYTGVFYKRYIL 243
Query: 105 GEPILGSGRIFPIVEE-DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G G I+ + ++ V++ + D+G + V Y
Sbjct: 244 GLWCAADGLIYDMFDKAKHVVSQIKETLLPKHYVSCDYGTQNATVFLLWQRGESG-VWYC 302
Query: 164 VKNYRCRE------QTPIFHVAALKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
++ Y +T I +V LK G P A D S AQ ++ G
Sbjct: 303 IREYYYSGRDESKQKTDIQYVEDLKQFLGGIKPTAVVVD------PSAASFIAQLKQSGF 356
Query: 217 KMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
++ N V GI + ++ G+ +
Sbjct: 357 RV-------KKAKNDVLDGIRFVGTQLNLGKIR 382
>gi|77405323|ref|ZP_00782419.1| phage terminase, large subunit, PBSX family [Streptococcus
agalactiae H36B]
gi|77176118|gb|EAO78891.1| phage terminase, large subunit, PBSX family [Streptococcus
agalactiae H36B]
Length = 426
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + V L P+
Sbjct: 119 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQVYLMFNPVSKA 177
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + S + V + T + ++ R+ I + +E + +
Sbjct: 178 NWVYKAFFIKSPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLEK 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + I + D H G+D+G+ + P A H+ + + +Y+++ Y + T
Sbjct: 238 LIFPKYEKRILNKDKLSHLPSFFGLDYGFINDPSAFLHVKIDDANKKLYILEEYVRKNLT 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+KS G + + R G++ G+ V
Sbjct: 298 NDKIANAIKSLGYAKEEIRGDSAEKKSN-------QELRNLGIQ---RMIDVKKGAGSVM 347
Query: 234 AGISDMLD 241
GI ML
Sbjct: 348 QGIQYMLQ 355
>gi|325681270|ref|ZP_08160800.1| phage terminase, large subunit, PBSX family [Ruminococcus albus 8]
gi|324107192|gb|EGC01478.1| phage terminase, large subunit, PBSX family [Ruminococcus albus 8]
Length = 419
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 22/255 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E Q T+ V DE P + + R + T + P ++
Sbjct: 121 EGSASLIQGVTLAGVLMDETALMPRSFVEQAVARCSVTGSKLWFNCNPDNPYHWFKREWI 180
Query: 63 SASS-SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + +++ P +E KR Y E +G G ++P+ +E
Sbjct: 181 DKADSKNLLYVHFELSDNPSLSEAVIKRYERLYTGAFYERFVRGRWSAAEGLVYPMFDER 240
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
+ + + D+G +P + +W + + Y + Y +T
Sbjct: 241 KYVCGELPQDCGRFVVSCDYGTVNPSS--FGLWGQSGGIWYRLAEYYYDSAREGSRRTDE 298
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
H AAL+ ++ + D S +R G N V +G
Sbjct: 299 EHYAALEELAGGREISY----VVCD-PSAASFIQCIKRHG------KFRVIQAKNDVISG 347
Query: 236 ISDMLDRMRSGRWKV 250
I D +R G ++
Sbjct: 348 IRRTQDFIRGGGLRI 362
>gi|94989072|ref|YP_597173.1| terminase large subunit [Streptococcus pyogenes MGAS9429]
gi|94992963|ref|YP_601062.1| terminase large subunit [Streptococcus pyogenes MGAS2096]
gi|94542580|gb|ABF32629.1| terminase large subunit [Streptococcus pyogenes MGAS9429]
gi|94546471|gb|ABF36518.1| Terminase large subunit [Streptococcus pyogenes MGAS2096]
Length = 428
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 122 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 180
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 181 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDK 240
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D H G+D+G+ + P A H+ + + +YV++ Y + T
Sbjct: 241 LIFPKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLT 300
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 301 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRMIDVTKGPGTVM 350
Query: 234 AGISDMLD 241
GI +L
Sbjct: 351 QGIQYLLQ 358
>gi|50913388|ref|YP_059360.1| terminase large subunit [Streptococcus pyogenes MGAS10394]
gi|50902462|gb|AAT86177.1| Terminase large subunit [Streptococcus pyogenes MGAS10394]
Length = 428
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 122 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 180
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 181 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDK 240
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D H G+D+G+ + P A H+ + + +Y+++ Y + T
Sbjct: 241 LIFPKYDKQILNKDKLSHLPSFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLT 300
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 301 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRMIDVTKGPGTVM 350
Query: 234 AGISDMLD 241
GI +L
Sbjct: 351 QGIQYLLQ 358
>gi|71911253|ref|YP_282803.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
gi|71854035|gb|AAZ52058.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
Length = 425
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 119 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 177
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 178 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDK 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D H G+D+G+ + P A H+ + + +YV++ Y + T
Sbjct: 238 LIFPKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVIEEYVRKNLT 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 298 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRMIDVTKGPGTVM 347
Query: 234 AGISDMLD 241
GI +L
Sbjct: 348 QGIQYLLQ 355
>gi|21910971|ref|NP_665239.1| putative terminase large subunit - phage associated [Streptococcus
pyogenes MGAS315]
gi|28876465|ref|NP_795683.1| putative terminase large subunit [Streptococcus pyogenes phage
315.6]
gi|28895342|ref|NP_801692.1| hypothetical protein SPs0430 [Streptococcus pyogenes SSI-1]
gi|157311161|ref|YP_001469206.1| terminase large subunit [Streptococcus phage P9]
gi|225871330|ref|YP_002747277.1| phage terminase, large subunit [Streptococcus equi subsp. equi
4047]
gi|21905179|gb|AAM80042.1| putative terminase large subunit - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810588|dbj|BAC63525.1| hypothetical protein [Streptococcus pyogenes SSI-1]
gi|119104310|gb|ABL61055.1| terminase large subunit [Streptococcus phage P9]
gi|225700734|emb|CAW95367.1| putative phage terminase, large subunit [Streptococcus equi subsp.
equi 4047]
Length = 425
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 119 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 177
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 178 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDK 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D H G+D+G+ + P A H+ + + +Y+++ Y + T
Sbjct: 238 LIFPKYDKQILNKDKLSHLPSFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLT 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 298 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRMIDVTKGPGTVM 347
Query: 234 AGISDMLD 241
GI +L
Sbjct: 348 QGIQYLLQ 355
>gi|306826838|ref|ZP_07460138.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
gi|304430856|gb|EFM33865.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
Length = 425
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 119 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 177
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 178 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELADRNEAYYKIYALGQFATLDK 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D H G+D+G+ + P A H+ + + +YV++ Y + T
Sbjct: 238 LIFPKYDKQILNKDKLSHLSSFFGLDYGFINDPSAFLHVKIDDANKKLYVLEEYVRKNLT 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 298 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRMIDVTKGPGTVM 347
Query: 234 AGISDMLD 241
GI +L
Sbjct: 348 QGIQYLLQ 355
>gi|304360664|ref|YP_003856795.1| putative terminase large subunit [Clostridium phage phiCTP1]
gi|302495523|gb|ADL40303.1| putative terminase large subunit [Clostridium phage phiCTP1]
Length = 472
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 13/245 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V+FDE PE + R + + P Y+
Sbjct: 142 EASQDLIQGITLAGVFFDEVALMPESFVSQATARCSVDGSKLWFNCNPEGPFHWFYVKYI 201
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + +++ P + R Y + G+ + G ++ + + +
Sbjct: 202 KKAKRRNALRLHFMMDDNPSLTPRILDRYKKQYSGVFYKRFILGQWVQAEGIVYSMFDRN 261
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH-VAA 180
+ + + D+G +P L+W + D K Y +
Sbjct: 262 VNVVPTKTRNYEAFYVSCDYGTKNPT--VFLLWGKIGDQWVCFKEYYYDGRKAGIQKTDK 319
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ + S A+ R +G ++ +N V GI
Sbjct: 320 QYADDYEDFIGYNKTVTIIVDPSAASFIAELRSRGYNVV-------SANNDVLDGIRLTG 372
Query: 241 DRMRS 245
++
Sbjct: 373 SLIKQ 377
>gi|167461539|ref|ZP_02326628.1| phage terminase large subunit [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322382498|ref|ZP_08056384.1| hypothetical protein PL1_2919 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321153524|gb|EFX45922.1| hypothetical protein PL1_2919 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 431
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/255 (13%), Positives = 80/255 (31%), Gaps = 26/255 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINAT----QGLVTLTLTPLKGRSPII 58
+ +D Q T ++ DE P+ + + R +A + P
Sbjct: 124 DSSQDVLQGLTAAGLYLDEVALFPKSFVEQAIGRCSAETDGNGAKMFFNCNPAGPYHWFK 183
Query: 59 EHYLSASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
Y+ + +I T+++ +E+ ++R + + G ++ G I+ +
Sbjct: 184 TEYIDKAKEKNILILHFTMDDNLSLSEKVKERFRRMFTGVFYKRYILGLWVMAEGIIYDM 243
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CRE 171
E + + I + +D+G +P L+W + + Y +K Y ++
Sbjct: 244 FSERHRVKAPPIKKCSRFYVSIDYGTQNPT--VFLLWGQYQNKWYCLKEYYYDGRKSEKQ 301
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+T + L + L S + + N
Sbjct: 302 KTDRQYYDDLVQFIGDLQI-----SSIIIDPSAASFITTIQE------NDRFRVLKAKND 350
Query: 232 VEAGISDMLDRMRSG 246
V GI + + +
Sbjct: 351 VLEGIRNTATCLSND 365
>gi|318057426|ref|ZP_07976149.1| phage terminase, large subunit, PBSX family [Streptomyces sp.
SA3_actG]
gi|318075987|ref|ZP_07983319.1| phage terminase, large subunit, PBSX family [Streptomyces sp.
SA3_actF]
Length = 423
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 74/255 (29%), Gaps = 21/255 (8%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
+ + T + DE P + + L R++ + T P + +L
Sbjct: 114 RLRGLTACLAYVDEATLIPRGFWNQLLGRLSVPGAKLMATTNPDNPGHWLRREFLDREGD 173
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D + T+++ P + + Y G + G I+ + +
Sbjct: 174 LDLRSWHFTLDDNPALDAAYVTSLKSEYTGLWYRRFIAGHWVQSEGAIYETFDPARHVVR 233
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPIFHVAA 180
+D+G +P+A L D +YVV +R R T + A
Sbjct: 234 DLPRIDRWVCDAIDYGTVNPYADVLLGVGAD-RRLYVVSEFRWDSRRERRSLTDAEYSKA 292
Query: 181 LKSWGKWLP-----WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ W +P S Q R G++ N V G
Sbjct: 293 RRGWLARVPQPEQNIVGVAPEWTIVDPSASSYIEQLHRDGVR------GVQPADNAVLDG 346
Query: 236 ISDMLDRMRSGRWKV 250
I + S +V
Sbjct: 347 IRTVSSLFSSDLLRV 361
>gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 448
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 32/263 (12%), Positives = 80/263 (30%), Gaps = 29/263 (11%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQG--LVTLTLTPLKGRS 55
K + +K +S + + +E D + + R+ + G + + P+ +
Sbjct: 124 FKGLD-DSEKIKSIANIDDIVVEECTEIDKQEFSQLGLRLRSKNGYNQIHVMFNPISKSN 182
Query: 56 PIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-G 112
+ E + D V++ T + +I R S
Sbjct: 183 WVYEMWFQNGYDESDTMVLKTTYKDNKFLPYDYINALIKMKETDPVYYRIYALGEFASLD 242
Query: 113 RIFPIVEEDIVINSLDIPEHWVQ---IGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYR 168
++ E++ + + + G+DFG+ + P A ++ + + IY+ +
Sbjct: 243 KLIYTNWEELDFDWRKLMQQRPYAKACFGLDFGYVNDPSAFIAMIVDEVNKEIYIFDEFY 302
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+ + G + D + + R +P G
Sbjct: 303 EKGLLNDALALKIVKRGYGKEIIF------ADSAERKSIDEIKR----NGVPRIKPAKKG 352
Query: 229 SNGVEAGISDMLDRMRSGRWKVF 251
+ + GI + +K++
Sbjct: 353 KDSIVNGIQFLKQ------FKIY 369
>gi|139473881|ref|YP_001128597.1| putative phage terminase, large subunit [Streptococcus pyogenes
str. Manfredo]
gi|134272128|emb|CAM30373.1| putative phage terminase, large subunit [Streptococcus pyogenes
str. Manfredo]
Length = 425
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 119 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 177
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 178 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDK 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D + G+D+G+ + P A H+ + + +Y+++ Y + T
Sbjct: 238 LIFPKYDKQILNKDKLSYLPSFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLT 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+K G + + R G+ P G V
Sbjct: 298 NDKIANAIKDLGYAKEEIRGDSAEKKSN-------QELRNLGI---PRMIDVTKGPGTVM 347
Query: 234 AGISDMLD 241
GI +L
Sbjct: 348 QGIQYLLQ 355
>gi|225419955|ref|ZP_03762258.1| hypothetical protein CLOSTASPAR_06296 [Clostridium asparagiforme
DSM 15981]
gi|225041463|gb|EEG51709.1| hypothetical protein CLOSTASPAR_06296 [Clostridium asparagiforme
DSM 15981]
Length = 318
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 22/234 (9%)
Query: 18 YVWFDEE---PPEDVYFEGLT--RINATQG---LVTLTLTPLKGRSPIIEHYLSASSSDR 69
+VW +E ED + + R +G +TLT P S + + D
Sbjct: 35 WVWIEEAYEITNEDDFNKLDLSIRGEVPEGYFKQITLTFNPWSATSWLKARFFDTPDEDT 94
Query: 70 QVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVE-EDIVINS 126
V T +E +R + + R R +GE + G I+ V ED ++
Sbjct: 95 FVKTTTWQCNEWLDESDRNIFLKMQKNNPRRYRIEGEGEWGIAEGLIYTNVVCEDFNVDE 154
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ +DFG+ P A + + + IY+ + T +K G
Sbjct: 155 IRAIPGIKSAFNLDFGFTDPNAFVCEMVDNAAMRIYIFDEWYQTGVTNKIIAEQIKKMGY 214
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
D + ++ + +G+K P G + V GI +
Sbjct: 215 GGQKI------ICDNAEPKSIAE-LQDEGIKAEPSR----KGKDSVNHGIQLIQ 257
>gi|319440826|ref|ZP_07989982.1| Phage terminase large subunit [Corynebacterium variabile DSM 44702]
Length = 400
Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/249 (14%), Positives = 81/249 (32%), Gaps = 16/249 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ + TV W DE + + + L R++ V T P + + YL
Sbjct: 107 SESRIRGMTVGRAWCDELTVLHQAFFKQLLARMSEKGAKVFATTNPDSPSHWLKKEYLDR 166
Query: 65 SSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
T+++ P ++ + + Y G+ + G I+ + +++ +
Sbjct: 167 IEEIPWSYHHFTMDDNPSLEDEYKDALKAEYTGLWYRRFILGQWVSAEGAIYDMWDDESM 226
Query: 124 INSLDIPEHWVQI--GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ + + + G+D+G HP G L+ + +Y+ + + T A L
Sbjct: 227 VVAPEDMPDMQRTLALGIDYGTTHPT-IGTLLQLGVDNKLYISDEWHPKRSTDAALSADL 285
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
W P + + Q G + N V GI +
Sbjct: 286 TRWMAHHP----DPEWIYVDPAAASFRLQLFEDGHR------RMKAADNKVIDGIRTVAS 335
Query: 242 RMRSGRWKV 250
+ + + +
Sbjct: 336 LLDNHQLYI 344
>gi|269120042|ref|YP_003308219.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
gi|268613920|gb|ACZ08288.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
Length = 430
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 22/236 (9%)
Query: 18 YVWFDEEP------PEDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASSSDR 69
+ W +E D+ E + +TLT P + + + SD
Sbjct: 145 WCWIEEAYEITKEKDFDMLNESIRGEVPENLYKQITLTFNPWNQGHWLKKRFFDVEDSDI 204
Query: 70 QVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEE-DIVINS 126
+E ++K D + R R GE + G I+ EE + I
Sbjct: 205 MAKTTNYQCNEFLDESDKKLFEDMKVKNPRRYRVAGLGEWGIVEGLIYENWEEREFDIEK 264
Query: 127 LDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
L G+DFG+ P ++ + +IYV + + + +K G
Sbjct: 265 LLSRTDIKTAFGLDFGYTNDPSGLFCGAVDKANKIIYVFDEFYKKGLSNRKIYEEIKIKG 324
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + ++ D + + R G+K+ G + + GI + D
Sbjct: 325 ------YSKERIRADCAEPKSIDELKRDFGLKIKGAR----KGKDSINNGIQYIQD 370
>gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132]
gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
ND132]
Length = 428
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 33/246 (13%), Positives = 73/246 (29%), Gaps = 16/246 (6%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS- 63
D + + V FDE + P V+ E + + + + + +G++ + E +
Sbjct: 110 NPDSLRGMYLDGVVFDEVAQMPLRVWTEVIRPALSDRKGWAMFIGTPRGKNALYEIWEKG 169
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-----GRIFPIV 118
+ D +ET +E + E E + G++
Sbjct: 170 KTDPDWLAAMYRASETGILPVEELEASAREMSPEEYEQEFECSFTAAIRGAYFGQLLADA 229
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+ + + + D G + V R V+ Y + +
Sbjct: 230 DREGRMTDVPADPSMPVHTAWDLGMSDSTSI-WFVQARPGGTFAVIDYYEACGEGLDHYA 288
Query: 179 AALKSWGKWLP-WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
L G PHD + +G+ R G++ + ++ GI+
Sbjct: 289 RILDDKGYKYGTHIAPHDIRVRELGTGKSRLETARSLGIRF------DIAANIPIQDGIN 342
Query: 238 DMLDRM 243
+ +
Sbjct: 343 AVRTIL 348
>gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114]
gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114]
Length = 409
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 78/263 (29%), Gaps = 20/263 (7%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQ---GLVTLTLTPLKGRS 55
LK ++ D + ++++ DE + PE+ + E L + + G V TP +
Sbjct: 96 LKGADKSADNLRGVGLNFLVLDEFADIPEEAWTEVLRPTISDKYANGKVLFVGTPKGYGN 155
Query: 56 PIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
+ + + + + T E E ++ + +G
Sbjct: 156 WSYDMFQRGQAGDPEWKSWKYTTIEGGQVEPHEIEQAKKDLDARSFRQEYEASFETYAGV 215
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR-CREQ 172
++ + + + ++ V GMDF A V + Y K
Sbjct: 216 VYYNFDRAKNVKPVPYDQNAVIHIGMDFNIDPMSACLFYVKQ---GISYFFKEIVIYSSN 272
Query: 173 TPIFHVAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
T + + +P + G+ + G + +
Sbjct: 273 TQEMIDEITRQYDPKRVIVYPDPASRQRKTSAGGKTDLMLLQNAGFNVKAKPTHAL---- 328
Query: 231 GVEAGISDMLDRM--RSGRWKVF 251
V I+ + R+ G+ ++
Sbjct: 329 -VRDRINSVNSRLCNYEGKRFIY 350
>gi|209559305|ref|YP_002285777.1| Terminase large subunit [Streptococcus phage NZ131.2]
gi|209540506|gb|ACI61082.1| Terminase large subunit [Streptococcus phage NZ131.2]
Length = 425
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 87/248 (35%), Gaps = 18/248 (7%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINAT---QGLVTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + L P+
Sbjct: 119 FKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKV 177
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + + + V + T + ++ R+ I + +E + +
Sbjct: 178 NWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDK 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ D I + D + G+D+G+ + P A H+ + + +Y+++ Y + T
Sbjct: 238 LIFPKYDKQILNKDKLSYLPSFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLT 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
A+ G + + ++ D + R+ G+ P G V
Sbjct: 298 NDKIANAIMDLG------YAKEEIRGDSAEKKSNLE-LRKLGI---PRMIDVTKGPGTVM 347
Query: 234 AGISDMLD 241
GI +L
Sbjct: 348 QGIQYLLQ 355
>gi|324325093|gb|ADY20353.1| phage terminase, large subunit, PBSX family [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 434
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 31/261 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEE------PPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + E + + +T+
Sbjct: 116 FRGLD-DPLKITSITVDVGALCWAWFEEAYEIEDQHKFETVVESIRGSYDSPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P + ++ + D I T +EQ+R R Y + R AR
Sbjct: 175 TFNPWSENHWLKSYFFDEETQAYDTFAITTTYKCNEWLDEQDRARYESLYTKNPRRARIV 234
Query: 104 -KGEPILGSGRIFPIVE-EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G ++ + D I+ + + G+DFG+ P A + + ++
Sbjct: 235 CDGEWGVADGLVYENFQVRDFDIDEIRQRKDVQSAFGLDFGYTNDPTALCCSLVDMRNET 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV + + + ++ G + + + D + + + G++
Sbjct: 295 IYVFDEHYEKGMSNKRIAKVIEEKG------YSKEKITADSAEPKSIDEI-KSLGIR--- 344
Query: 221 ECATFDDGSNGVEAGISDMLD 241
G + V GI + D
Sbjct: 345 RIEGARKGKDSVNNGIQYIQD 365
>gi|227833811|ref|YP_002835518.1| putative phage terminase [Corynebacterium aurimucosum ATCC 700975]
gi|262184752|ref|ZP_06044173.1| putative phage terminase [Corynebacterium aurimucosum ATCC 700975]
gi|227454827|gb|ACP33580.1| putative phage terminase [Corynebacterium aurimucosum ATCC 700975]
Length = 751
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/262 (18%), Positives = 89/262 (33%), Gaps = 30/262 (11%)
Query: 5 EQGRD-KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQG----LVTLTLTPLKGRSPI 57
+QG + + + T +++DE PE+V+ +R+ AT V T P +
Sbjct: 109 DQGAEGRIRGGTYQLLFYDELTLCPENVWEMLWSRMRATGNPNPPRVFATTNPATPAHYL 168
Query: 58 IEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP 116
+++ D T+++ P E+ ++R+ SY +GE G ++
Sbjct: 169 KTNFIDKPGETDTYARLFTMDDNPGLTEEYKERMKASYTGIFYRRMIRGEWAAAEGAVYE 228
Query: 117 IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR-------- 168
+ D ++ V G+D+G +HP A L D + V +
Sbjct: 229 SWDPDTMVKG--RAVGTVLAVGIDYGTNHPSAGYALTVTEDG--LQVTHEWSPQTTGLGG 284
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
T +L+ W LP + + + RR
Sbjct: 285 RTRLTDGELADSLQEWLSTLP---NQPKGLYIDPAAASFHEELRR-------RKVRTTKA 334
Query: 229 SNGVEAGISDMLDRMRSGRWKV 250
N V GI + + SG +
Sbjct: 335 DNSVVDGIRQVDSLLTSGALTI 356
>gi|262184823|ref|ZP_06044244.1| Phage terminase large subunit [Corynebacterium aurimucosum ATCC
700975]
Length = 421
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/260 (16%), Positives = 82/260 (31%), Gaps = 30/260 (11%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY------ 61
K + T+ + DE + + L+R++ + + T P + + Y
Sbjct: 117 KIRGMTIGLAFADEITLLHPAFFKQLLSRLSKSYSKLFCTTNPDSQNHWLRKDYLVRVPG 176
Query: 62 ---------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+D T+++ P E + + Y +G + G
Sbjct: 177 CMHYDTKTQPEDQLADWTYWHFTMDDNPSLTEGYKSNLRKEYTGMWYLRFIQGLWVAAEG 236
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIG--GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
I+ + +E + + QI G+D+G HP L D + +Y V +
Sbjct: 237 AIYQMWDEAKHVVHPEDMPIMRQIIALGIDYGTTHPTTGILLGIG-DDNRLYAVDEWAPG 295
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
T A LK W + + + Q G++ D +N
Sbjct: 296 RLTNNALTADLKEWLTRHDY----PTWIYYDPAAASFGLQLHEDGIR------RIDKANN 345
Query: 231 GVEAGISDMLDRMRSGRWKV 250
V GI + + +G +
Sbjct: 346 DVLDGIRTVASLLDNGNLLI 365
>gi|227833751|ref|YP_002835458.1| Phage terminase large subunit [Corynebacterium aurimucosum ATCC
700975]
gi|227454767|gb|ACP33520.1| Phage terminase large subunit [Corynebacterium aurimucosum ATCC
700975]
Length = 414
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/260 (16%), Positives = 82/260 (31%), Gaps = 30/260 (11%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY------ 61
K + T+ + DE + + L+R++ + + T P + + Y
Sbjct: 110 KIRGMTIGLAFADEITLLHPAFFKQLLSRLSKSYSKLFCTTNPDSQNHWLRKDYLVRVPG 169
Query: 62 ---------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+D T+++ P E + + Y +G + G
Sbjct: 170 CMHYDTKTQPEDQLADWTYWHFTMDDNPSLTEGYKSNLRKEYTGMWYLRFIQGLWVAAEG 229
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIG--GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
I+ + +E + + QI G+D+G HP L D + +Y V +
Sbjct: 230 AIYQMWDEAKHVVHPEDMPIMRQIIALGIDYGTTHPTTGILLGIG-DDNRLYAVDEWAPG 288
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
T A LK W + + + Q G++ D +N
Sbjct: 289 RLTNNALTADLKEWLTRHDY----PTWIYYDPAAASFGLQLHEDGIR------RIDKANN 338
Query: 231 GVEAGISDMLDRMRSGRWKV 250
V GI + + +G +
Sbjct: 339 DVLDGIRTVASLLDNGNLLI 358
>gi|313115194|ref|ZP_07800678.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622472|gb|EFQ05943.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 482
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/309 (18%), Positives = 95/309 (30%), Gaps = 64/309 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
Y + R +Q ++ FDE + Y R V + T G
Sbjct: 108 MQYTKDRTNYQGKAFDFIGFDELTHFEWEEYSYMMSRNRPTGPGTRVYMRATTNPGGIGH 167
Query: 55 SPIIEHYLSASSSD----------------------RQVIRMTINETP--HYNEQERKRI 90
+ +++ + R I +I + P N+
Sbjct: 168 GWVKARFITPAPPGTPITEEYTVKLPDGTEQKLQRARVFIPSSIFDNPALLANDPGYLAS 227
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ S P E++A G SG++F D VI IP+HW G D
Sbjct: 228 LASMPEAEKQALLYGSWDSFSGQVFTEWRNDPAHYEDQRWTHVIAPFTIPKHWQLYRGFD 287
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH-------VAALKSWGKWLP---- 189
FG+ PF+ G + + + + + Y C + ++ + P
Sbjct: 288 FGFSKPFSVGWYAADEEGRLYRIKELYGCTGRPNEGLRIDPVEQARRIREAEQNDPLLRG 347
Query: 190 --WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR--- 244
D D+ GE ++A R P + G N AG R+
Sbjct: 348 RVIHGIADPAIFDESRGESIAAMMERS-----PNFLRWSPGDNTRLAGKMQFHYRLNFDA 402
Query: 245 SGR--WKVF 251
GR ++VF
Sbjct: 403 DGRPMFQVF 411
>gi|282919671|ref|ZP_06327403.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
C427]
gi|282316309|gb|EFB46686.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
C427]
Length = 447
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|152976656|ref|YP_001376173.1| PBSX family phage terminase large subunit [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025408|gb|ABS23178.1| phage terminase, large subunit, PBSX family [Bacillus cytotoxicus
NVH 391-98]
Length = 434
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 31/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEE------PPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + E + + +T+
Sbjct: 116 FRGLD-DPLKITSITVDVGILCWAWFEEAYEIEDQHKFETVVESIRGSWDSPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P + ++ + D I T ++Q+R R Y + R AR
Sbjct: 175 TFNPWSENHWLKSYFFDEETQAYDTFAITTTYKCNEWLDKQDRARYESLYEKNPRRARIV 234
Query: 104 -KGEPILGSGRIFPIVE-EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G ++ + D I+ + + G+DFG+ P A + + ++
Sbjct: 235 CDGEWGVADGLVYENFQVRDFDIDEIRQRKDVQSAFGLDFGYTNDPTALCCSLVDLRNET 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV Y + + ++ G + + + D + + + G++
Sbjct: 295 IYVFDEYYEKGMSNKRIAKMIEEKG------YSKEKITADSAEPKSIDEI-KSLGIR--- 344
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + GI +
Sbjct: 345 RIEGARKGKDSINNGIQFIQ 364
>gi|116333739|ref|YP_795266.1| Phage terminase large subunit [Lactobacillus brevis ATCC 367]
gi|116099086|gb|ABJ64235.1| Phage terminase large subunit [Lactobacillus brevis ATCC 367]
Length = 420
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 25/256 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q TV +FDE PE + R + P +L
Sbjct: 122 EGSQDLVQGITVAGFFFDEVALMPESFVNQATARASVDGAKFWFNCNPAGPYHWFKLEWL 181
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + I T+ + P + + R Y + G+ +L G I+ +++
Sbjct: 182 DQLDQHKAIHIHFTMKDNPSLSPETIDRYERMYTGVFYQRFILGQWVLSDGIIYDNFDKN 241
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPI 175
++ +D+G +P D ++ K Y +++T
Sbjct: 242 KMVVKNPQGTARKYAVSIDYGTLNPTVFLMWGL--YGDTWHLTKMYYYDGRHKHKQKTDE 299
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A L + L D S RR G ++ N V G
Sbjct: 300 EYSAELDRFEDGLNPVEIID------PSAASFITLRRRGGHHVI-------KADNDVLDG 346
Query: 236 ISDMLDRMRSGRWKVF 251
I M +G+ VF
Sbjct: 347 IRKTGMAMNTGKI-VF 361
>gi|260663805|ref|ZP_05864691.1| phage terminase large subunit [Lactobacillus fermentum 28-3-CHN]
gi|260551619|gb|EEX24805.1| phage terminase large subunit [Lactobacillus fermentum 28-3-CHN]
Length = 392
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 22/252 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQGL---VTLTLTPLKGR 54
K + +K +S + V +E D + + R+ + + P+
Sbjct: 84 FKGMD-DPEKIKSIKGLSDVVMEEASEFNQDDFTQLTLRLREPKHKQRQLFCMFNPVSKL 142
Query: 55 SPIIEHYLSA----SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ + + +S + + T + + + I + + +
Sbjct: 143 NWTYKQWFDPTATVDTSRVAIHQSTYKDNHFLDADNIRTIENLKQTNPAYYKIYTLGEFA 202
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP-FAAGHLVWNRDSDVIYVVKNYRC 169
+ + S + G+DFG+ + A H+ ++D+ IY+++ Y
Sbjct: 203 TLDKLVFPDFSKRRLSAQRMVNLPSYFGLDFGYTNDETAFMHVKVDQDNHTIYIMEEYAK 262
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+K G + + + D + ++ R +P G
Sbjct: 263 HGMLNSDIARMIKQMG------YSKEIITADAAEPKSIAEIKRD----GIPRIRPAKKGK 312
Query: 230 NGVEAGISDMLD 241
+ + GIS M
Sbjct: 313 DSIVQGISFMQQ 324
>gi|227505813|ref|ZP_03935862.1| phage terminase [Corynebacterium striatum ATCC 6940]
gi|227197594|gb|EEI77642.1| phage terminase [Corynebacterium striatum ATCC 6940]
Length = 378
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 30/260 (11%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY------ 61
K + T+ + DE + + L+R++ + + T P + + Y
Sbjct: 117 KIRGMTIGLAFADEITLLHPAFFKQLLSRLSKSYSKLFCTTNPDSQNHWLRKDYLVRVPG 176
Query: 62 ---------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+D T+++ P + + Y +G + G
Sbjct: 177 CMHYDTKTQPENQLTDWTYWHFTMDDNPSLTTAYKNNLKKEYTGMWFLRFIQGLWVAAEG 236
Query: 113 RIFPIVEE-DIVINSLDIPEHWVQIG-GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
I+ + +E V++ D+P I G+D+G HP L D +Y V +
Sbjct: 237 AIYSMWDESKHVVDPEDMPPMETIIALGIDYGTTHPTTGIMLGMGTD-RKLYAVDEWAPG 295
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
T A LK W + + + Q G++ +N
Sbjct: 296 RLTNAALTADLKEWLTSHDY----PQWIYYDPAAASFGLQLHEDGVQ------RITTANN 345
Query: 231 GVEAGISDMLDRMRSGRWKV 250
V GI + + +G+ V
Sbjct: 346 DVLDGIRTISSLLDNGQLFV 365
>gi|29028593|ref|NP_803283.1| large terminase [Staphylococcus phage 11]
gi|18920517|gb|AAL82258.1| large terminase [Staphylococcus phage 11]
Length = 447
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|293368016|ref|ZP_06614649.1| large terminase subunit [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291317838|gb|EFE58251.1| large terminase subunit [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 421
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 81/256 (31%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D V T + P ++Q + + +E R +
Sbjct: 173 PKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQEAESTKERNELRYRWEYMGE 232
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I ++ + + I +DFG+ P A +++ +IY V
Sbjct: 233 AIGSGVVPFNNLQIEKIPDELYKSFDNIRNAVDFGYATDPLAFVRWHYDKKKRIIYAVDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + G+K
Sbjct: 293 HYGVQISNREFANWLKRRG------YQSDEIFADSAEPKSIAELKQEHGIK---RIKGVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 344 KGPDSVEHGEQWLDDL 359
>gi|151222005|ref|YP_001332827.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. Newman]
gi|282919879|ref|ZP_06327608.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9765]
gi|150374805|dbj|BAF68065.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. Newman]
gi|282594595|gb|EFB99579.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9765]
Length = 447
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|258420789|ref|ZP_05683726.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9719]
gi|257843231|gb|EEV67643.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9719]
Length = 447
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|15923876|ref|NP_371410.1| large terminase [Staphylococcus aureus subsp. aureus Mu50]
gi|156979212|ref|YP_001441471.1| hypothetical protein SAHV_0881 [Staphylococcus aureus subsp. aureus
Mu3]
gi|255005677|ref|ZP_05144278.2| hypothetical protein SauraM_04380 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|14246655|dbj|BAB57048.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
Mu50]
gi|156721347|dbj|BAF77764.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
Length = 425
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 232 DKMVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 292 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 341
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 342 VVQGLQFLMQ 351
>gi|122891756|ref|YP_001004302.1| large terminase [Staphylococcus phage phiETA2]
gi|121309235|dbj|BAF43857.1| large terminase [Staphylococcus phage phiETA2]
Length = 425
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLIFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 232 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 292 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 341
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 342 VVQGLQFLMQ 351
>gi|282917180|ref|ZP_06324935.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
subsp. aureus D139]
gi|282318807|gb|EFB49162.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
subsp. aureus D139]
Length = 447
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|237735535|ref|ZP_04566016.1| terminase [Mollicutes bacterium D7]
gi|229381280|gb|EEO31371.1| terminase [Coprobacillus sp. D7]
Length = 427
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 40/272 (14%), Positives = 82/272 (30%), Gaps = 41/272 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY- 61
E+ +D Q T+ ++FDE PE + R + P ++
Sbjct: 106 ERSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVKGSKWWFNCNPQGPFHWFKVNWI 165
Query: 62 -----------------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
+ + + T+N+ +++ ++R +Y + +
Sbjct: 166 DKSIGYLNAEQIKELERKKETVKNILYVHFTMNDNLSLDKEVKRRYASAYNGVFYDRYIR 225
Query: 105 GEPILGSGRIFPIVEED--IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
G + G I+ + D IV I E+ + D+G +P ++ Y
Sbjct: 226 GLWAVAEGVIYDMFNRDKHIVNKRPKIDENEKKYISCDYGTQNPMVFLLWEKG-VNETWY 284
Query: 163 VVKNYRCRE------QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
K Y +T + L + L + S + + +G+
Sbjct: 285 ATKEYYYSGREERKQKTDSQYADDLIEFIGSLNIEYIIV-----DPSAASFITELKSRGL 339
Query: 217 KMLPECATFDDGSNGVEAGISDMLDRMRSGRW 248
+ N V GI + + GR
Sbjct: 340 SVKRAR-------NDVSNGIRSVGTMLNLGRI 364
>gi|258429000|ref|ZP_05688257.1| phage terminase large subunit [Staphylococcus aureus A9299]
gi|257849720|gb|EEV73685.1| phage terminase large subunit [Staphylococcus aureus A9299]
Length = 447
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + ++ D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEIKADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|88195733|ref|YP_500542.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|87203291|gb|ABD31101.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|329727756|gb|EGG64210.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus 21189]
Length = 425
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 232 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 292 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 341
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 342 VVQGLQFLMQ 351
>gi|66395301|ref|YP_239566.1| ORF008 [Staphylococcus phage 69]
gi|62635652|gb|AAX90763.1| ORF008 [Staphylococcus phage 69]
Length = 447
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 79/250 (31%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLGYAREEI------TADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|119953680|ref|YP_950600.1| putative large terminase subunit [Staphylococcus phage CNPH82]
gi|112361306|gb|ABI15678.1| putative large terminase subunit [Staphylococcus phage CNPH82]
gi|329736010|gb|EGG72285.1| phage terminase, large subunit, PBSX family [Staphylococcus
epidermidis VCU045]
Length = 421
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D V T + P ++Q + + +E+ R +
Sbjct: 173 PKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGE 232
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I D+ + + I +DFG+ P A +++ +IY V
Sbjct: 233 AIGSGVVPFNNLQIEKIPDDLYKTFDNIRNAVDFGYATDPLAFVRWHYDKKKRIIYAVDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + G+K
Sbjct: 293 HYGVQISNREFANWLKRRG------YQSDEIYADSAEPKSIAELKQEHGIK---RIKGVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 344 KGPDSVEHGEQWLDDL 359
>gi|118430762|ref|YP_873987.1| phage terminase large subunit [Staphylococcus phage phiNM]
gi|151221227|ref|YP_001332049.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. Newman]
gi|297246862|ref|ZP_06930649.1| PBSX family phage terminase [Staphylococcus aureus A8796]
gi|104641654|gb|ABF73068.1| phage terminase large subunit [Staphylococcus aureus phage phiNM1]
gi|104641756|gb|ABF73134.1| phage terminase large subunit [Staphylococcus aureus phage phiNM2]
gi|150374027|dbj|BAF67287.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. Newman]
gi|297176295|gb|EFH35577.1| PBSX family phage terminase [Staphylococcus aureus A8796]
gi|315128338|gb|EFT84353.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
CGS03]
Length = 425
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 232 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 292 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 341
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 342 VVQGLQFLMQ 351
>gi|160945639|ref|ZP_02092865.1| hypothetical protein FAEPRAM212_03168 [Faecalibacterium prausnitzii
M21/2]
gi|158443370|gb|EDP20375.1| hypothetical protein FAEPRAM212_03168 [Faecalibacterium prausnitzii
M21/2]
gi|295103135|emb|CBL00679.1| Terminase-like family. [Faecalibacterium prausnitzii SL3/3]
Length = 481
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 95/309 (30%), Gaps = 64/309 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
Y + R +Q ++ FDE + Y R V + T G
Sbjct: 107 MQYTKDRTNYQGKAYDFIGFDELTHFEWDEYSYMMSRNRPTGPGTRVYMRATTNPGGIGH 166
Query: 55 SPIIEHYLSASSSD----------------------RQVIRMTINETP--HYNEQERKRI 90
+ +++ + R I ++ + P N+
Sbjct: 167 GWVKARFITPAPPGTPIVETVTVRLPDGTDQQMERARVFIPSSVFDNPALLANDPGYLAS 226
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ S P E++A G SG++F D VI IP+HW G D
Sbjct: 227 LASLPEAEKQALLYGSWDSFSGQVFTEWRNDPAHYQDQRWTHVIAPFAIPKHWPIWRGYD 286
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH-------VAALKSWGKWLP---- 189
FG+ PF+ G + + + + + Y C + ++ + P
Sbjct: 287 FGFSKPFSVGWYAVDEEGRLYRIKELYGCTGRPNEGLRIDPVEQAKRIREAEQNDPLLRG 346
Query: 190 --WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR--- 244
D D+ GE ++A R P + G + AG R+R
Sbjct: 347 RVIHGVADPAIFDESRGESIAAMMERS-----PHFLHWQPGDHTRLAGKMQFHYRLRFAP 401
Query: 245 SGR--WKVF 251
GR +VF
Sbjct: 402 DGRPMLQVF 410
>gi|319894679|gb|ADV76490.1| phage terminase large subunit [Staphylococcus phage TEM126]
Length = 425
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 232 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 292 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 341
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 342 VVQGLQFLMQ 351
>gi|257795796|ref|ZP_05644775.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9781]
gi|257789768|gb|EEV28108.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9781]
Length = 425
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 232 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 292 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 341
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 342 VVQGLQFLMQ 351
>gi|66395379|ref|YP_239642.1| ORF009 [Staphylococcus phage 53]
gi|148717883|ref|YP_001285355.1| terminase large subunit [Staphylococcus phage 80alpha]
gi|62635729|gb|AAX90840.1| ORF009 [Staphylococcus phage 53]
gi|103058669|gb|ABF71612.1| terminase large subunit [Staphylococcus phage 80alpha]
Length = 447
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFSTL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H + +Y+++ Y +
Sbjct: 254 DKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ R G+K G
Sbjct: 314 MLNDEIANVIKQLG------YAKEEITADSAEQKSIAE-LRNLGLK---RILPTKKGKGS 363
Query: 232 VEAGISDMLD 241
V G+ ++
Sbjct: 364 VVQGLQFLMQ 373
>gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 415
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 28/253 (11%), Positives = 72/253 (28%), Gaps = 23/253 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPEDVYFE----GLTRINATQGLVTLTLTPLKGRS 55
K + +K +S + + +E D + R + + P+ +
Sbjct: 107 FKGID-DPEKIKSIAGIDDIVVEECTEIDEFDFDQLNLRLRSKNPYNQIHVMFNPVSKSN 165
Query: 56 PIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGS 111
+ + + D V+ T + ++ + GE
Sbjct: 166 WVYKRWFKNGYDTKDTIVLHTTYKNNKFLPKDYIDSLLKLEKDNPVYFRIYALGEFATLD 225
Query: 112 GRIFPIVEED--IVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYR 168
I+ +E+ L + I +DFG+ P A + ++ + +++ ++
Sbjct: 226 KLIYTNWKEESFDYKEILKNNRNTKAIFSLDFGYTNDPTAFVCSIIDKINKKLWIFDEFQ 285
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+ + G D + + + +R G+ G
Sbjct: 286 EKGLLNDEIAEKIIDLGYRKEVIVC------DSAEPKSI-EELKRNGLS---RVKGAVKG 335
Query: 229 SNGVEAGISDMLD 241
+ + GI +
Sbjct: 336 RDSIINGIQLIQQ 348
>gi|149004427|ref|ZP_01829167.1| Phage terminase large subunit [Streptococcus pneumoniae SP14-BS69]
gi|147757676|gb|EDK64694.1| Phage terminase large subunit [Streptococcus pneumoniae SP14-BS69]
Length = 392
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + + P + Y++
Sbjct: 113 SGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYIN 172
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
+ +++ +++ R+ I ++ P + G + G G ++ E++
Sbjct: 173 SGDDMIIDFHFKLDDNTFMSDRYRENIKNATPAGVFYDRDILGLWVTGEGVVYRDFSENM 232
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
V++++ + G+D+G+ H + + Y+++ + + + F V
Sbjct: 233 VVDNVP-EDITKVYAGVDWGYEHFGSIVVIGET-SGGSAYLLEEHAHQYKEIDFWVD--- 287
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
K + + + D E ++ + E + + V +GI ++
Sbjct: 288 -LAKNIKERYGNITFWADSARPEHVA--------RFQREQLRTFNANKAVLSGIEEVAKL 338
Query: 243 MRSGRWKV 250
M++GR+ V
Sbjct: 339 MKAGRFFV 346
>gi|321157064|emb|CBW39051.1| Phage terminase large subunit [Streptococcus phage 34117]
Length = 404
Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + + P + Y++
Sbjct: 113 SGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYIN 172
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
+ +++ +++ R+ I ++ P + G + G G ++ E++
Sbjct: 173 SGDDMIIDFHFKLDDNTFMSDRYRENIKNATPAGVFYDRDILGLWVTGEGVVYRDFSENM 232
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
V++++ + G+D+G+ H + + Y+++ + + + F V
Sbjct: 233 VVDNVP-KDITKVYAGVDWGYEHFGSIVVIGET-SGGSAYLLEEHAHQYKEIDFWVD--- 287
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
K + + + D E ++ + E + + V +GI ++
Sbjct: 288 -LAKNIKERYGNITFWADSARPEHVA--------RFQREQLRTFNANKAVLSGIEEVAKL 338
Query: 243 MRSGRWKV 250
M++GR+ V
Sbjct: 339 MKAGRFFV 346
>gi|148990210|ref|ZP_01821441.1| Phage terminase large subunit [Streptococcus pneumoniae SP6-BS73]
gi|147924477|gb|EDK75566.1| Phage terminase large subunit [Streptococcus pneumoniae SP6-BS73]
Length = 404
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + + P + Y++
Sbjct: 113 SGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYIN 172
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
+ +++ +++ R+ I ++ P + G + G G ++ E++
Sbjct: 173 SGDDMIIDFHFKLDDNTFMSDRYRENIKNATPAGVFYDRDILGLWVTGEGVVYRDFSENM 232
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
V++++ + G+D+G+ H + + Y+++ + + + F V
Sbjct: 233 VVDNVP-EDITKVYAGVDWGYEHFGSIVVIGET-SGGSAYLLEEHAHQYKEIDFWVD--- 287
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
K + + + D E ++ + E + + V +GI ++
Sbjct: 288 -LAKNIKERYGNITFWADSARPEHVA--------RFQREQLRTFNANKAVLSGIEEVAKL 338
Query: 243 MRSGRWKV 250
M++GR+ V
Sbjct: 339 MKAGRFFV 346
>gi|300768463|ref|ZP_07078363.1| PBSX family phage terminase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|300493981|gb|EFK29149.1| PBSX family phage terminase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 412
Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 76/246 (30%), Gaps = 18/246 (7%)
Query: 11 WQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ T + +E E+V+ E L R +A + P + Y+
Sbjct: 120 IRGMTSFGAYINEASLANEEVFNEILNRCSAQGARIICDTNPDVPTHYLKASYIDNDDPK 179
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDIVIN 125
TI++ Q + P + G + G G ++ +D +I
Sbjct: 180 AGTVSFHFTIDDNTFLPPQYVEHQKAGTPSGMFYDRAILGLWVSGEGMVYKDFNKDEMII 239
Query: 126 SLDIPE-HWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
G+D+G+ H + +R + Y+++ + + + + V K
Sbjct: 240 PRAQLPADLTYYAGVDWGYEHKGTIVVMADDRVGNT-YLIEEHTRQFEEIDYWVEIAKDI 298
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
+ D E ++ + E + V +GI + M+
Sbjct: 299 QRRYGRNVK---FWADSARPEHVA--------RFQREGLKAFNAKKSVLSGIESVAKCMK 347
Query: 245 SGRWKV 250
G + V
Sbjct: 348 QGHFFV 353
>gi|269119880|ref|YP_003308057.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
gi|268613758|gb|ACZ08126.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
Length = 416
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 71/236 (30%), Gaps = 22/236 (9%)
Query: 18 YVWFDEE---PPEDVYFEGLTRINATQ-----GLVTLTLTPLKGRSPIIEHYLSASSSDR 69
+VW +E ED + + I +T T P + + + D
Sbjct: 126 WVWIEEAYELMSEDAFNKLDLSIRGKLPEHLWKQITFTFNPWNEKHWLKARFFDVEDEDI 185
Query: 70 QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKG--EPILGSGRIFPIVEEDIV-INS 126
+ T ++ +RK + + R +G E + G IF EE
Sbjct: 186 LALTTTYKINEFLDDDDRKVFEKMKRDNPKRYRVEGEAEWGIAEGLIFENWEEKEFDYRE 245
Query: 127 LDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+ + V G+DFG+ P A + + + IYV + +K G
Sbjct: 246 ISKRKGVVSRFGLDFGYTNDPSAFTGYLEDEKNKEIYVFDEFYKSGMLNDEIANQIKYMG 305
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
Q + +R G++ G + V GI +
Sbjct: 306 YAKEEIIGDSSEQKS-------IEEIKRYGIR---RIRPSVKGKDSVLHGIQLLQQ 351
>gi|297565631|ref|YP_003684603.1| hypothetical protein Mesil_1197 [Meiothermus silvanus DSM 9946]
gi|296850080|gb|ADH63095.1| hypothetical protein Mesil_1197 [Meiothermus silvanus DSM 9946]
Length = 434
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 22/258 (8%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP----EDVYFEGLTRINATQGLVTLTLTPLKGRSP 56
+ Q D +S T W DE D + L R++ QG V +T TP
Sbjct: 129 FFGHAQDPDSLESATAKAAWLDEAGQKKFRRDSWQAILRRLSIHQGRVLITTTPYYLG-W 187
Query: 57 II---EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
+ D +++ + P++ E +R + P + + G +G+
Sbjct: 188 LKADLHDPARQGHPDIELVNFKSVDNPNFPRAEYERARATLPRWKFDMFYNGLFTRPAGQ 247
Query: 114 IFPIVEEDIVINS-LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
I+ + ++ + ++PE W + G+DFG + AA L N S+ +V Y+ +
Sbjct: 248 IYDCFDPEVHVRPAFNVPEDWPRFIGLDFGGVN-TAAVKLAKNPASEEYFVYAEYKAGGR 306
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
T H L P A K G + G+ + V
Sbjct: 307 TAREHAEVLLKGEPRAPHAVGGA-----KSEGNWRLE-FAAAGLGVAAPPVA------DV 354
Query: 233 EAGISDMLDRMRSGRWKV 250
E GI+ + ++SGR V
Sbjct: 355 EVGINRVYGLLKSGRLYV 372
>gi|295102643|emb|CBL00188.1| Terminase-like family [Faecalibacterium prausnitzii L2-6]
Length = 464
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 96/309 (31%), Gaps = 64/309 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
Y + R +Q ++ FDE + Y R V L T G
Sbjct: 90 MQYTKDRTNYQGKAFDFIGFDELTHFEWEEYSYMMSRNRPTGPGTRVYLRATTNPGGVGH 149
Query: 55 SPIIEHYLSASSSD----------------------RQVIRMTINETP--HYNEQERKRI 90
+ +++ + R I +I + P N+ +
Sbjct: 150 GWVKARFITPAPPGTPIVEEYPVRMPDGTEKVLRRARVFIPSSIFDNPALLENDPDYLAS 209
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ + P E++A G SG++F D VI IP+HW G D
Sbjct: 210 LAAMPEAEKQALLYGSWDSFSGQVFTEWRNDPNHYEDQRWTHVIAPFTIPKHWKIYRGYD 269
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH-------VAALKSWGKWLP---- 189
FG+ PF+ G + + + + + Y C + ++ + P
Sbjct: 270 FGFSKPFSVGWYAADEEGRLYRIKELYGCTGRPNEGLRIDPVEQARRIREAEQNDPVLRG 329
Query: 190 --WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR--- 244
D D+ GE +++ R P + G + AG M R+
Sbjct: 330 RVIQGIADPAIFDESRGESIASMMERG-----PNFLHWMPGDHTRLAGKMQMHYRLNFDG 384
Query: 245 SGR--WKVF 251
GR +VF
Sbjct: 385 EGRPMLQVF 393
>gi|29832064|ref|NP_826698.1| phage-related terminase large subunit [Streptomyces avermitilis
MA-4680]
gi|29609182|dbj|BAC73233.1| putative phage-related terminase large subunit [Streptomyces
avermitilis MA-4680]
Length = 432
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 33/268 (12%), Positives = 83/268 (30%), Gaps = 23/268 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY- 61
E +DK + ++ + DE PE + +R++ + T P + + Y
Sbjct: 104 ESSKDKIRGLSLVGAYVDELSTMPESFFSMLTSRMSDANPRLIGTSNPDSANHWLKKKYL 163
Query: 62 --------------LSASSSDRQVIRMTINETPHYNEQERKR--IIDSYPLHEREARTKG 105
+ D + I++ P ++ + + G
Sbjct: 164 DKARVHLTRTGEVRTPGNDLDLARLTFVIDDNPTLTPTYVQQRKAEYAATPLLYKRLILG 223
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
E + G ++ + ++ + + G+D+G + AA + D +YV
Sbjct: 224 EWCIAEGAVYEVFDDQRHVVDIVPEIVQWLGVGLDYGTSNATAALLVGIGSDG-CVYVTN 282
Query: 166 NYRCREQTPIFHVA-ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK--MLPEC 222
+R T + + G + +L ++ + +
Sbjct: 283 EWRHDGHTEEQLSDGQISQRLRTWMRTLTVPGSRDKGIEPPRLIVDPSAASLRKQLQLDG 342
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRWKV 250
N V +GI + + + + + ++
Sbjct: 343 LGSMRAHNKVLSGIRIVANLLAADKLRI 370
>gi|289551569|ref|YP_003472473.1| Phage terminase, large subunit [Staphylococcus lugdunensis
HKU09-01]
gi|289181100|gb|ADC88345.1| Phage terminase, large subunit [Staphylococcus lugdunensis
HKU09-01]
Length = 424
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 27/250 (10%), Positives = 81/250 (32%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHINKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 172 NWVYKYFFEHDKPMENVMIRQSSYRDNKFLDEMTRQNLELLASRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + H +DFG+ + P A H + ++ +Y+V+ Y +
Sbjct: 232 DKLVFPKYEKKLLNKQELSHLQSYFAIDFGYVNDPSAFIHCKVDMENKKLYIVEEYVKKG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + ++ G+ G +
Sbjct: 292 MLNNEIAEVIKRLG------YAKEIITADSAEQKSIAEI-SNHGI---TRIRPAMKGKDS 341
Query: 232 VEAGISDMLD 241
+ +GI +
Sbjct: 342 IISGIQYLNQ 351
>gi|238018850|ref|ZP_04599276.1| hypothetical protein VEIDISOL_00710 [Veillonella dispar ATCC 17748]
gi|237864616|gb|EEP65906.1| hypothetical protein VEIDISOL_00710 [Veillonella dispar ATCC 17748]
Length = 415
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 21/234 (8%)
Query: 19 VWFDEE---PPEDVYF---EGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASSSDRQ 70
+W +E ED + E + V LT P R + + + S +
Sbjct: 133 LWIEEAYEIMSEDAFNRLDESIRGQLPDGLYHQVVLTFNPWSDRHWLKKRFFDEPSDNVL 192
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHEREART-KGEPILGSGRIFPIVEEDIVINSLDI 129
+ +E + + +R G + G ++ +E
Sbjct: 193 AMTTNYLCNEFLSESDLVLFEEMKKNPKRYQVAGLGNWGVVEGLVYENWKEQEFSVDYIR 252
Query: 130 PEHWVQIG-GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187
+ + G+DFG+ P A ++ + + IY+ T + + G
Sbjct: 253 GQTGTKSAFGLDFGYTVDPTALVCMLVDMVNKKIYIFDELYETGLTNQQLASRIIDMG-- 310
Query: 188 LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + ++ D + + + + G+K + G + + GI + D
Sbjct: 311 ----YAKEKIRADSAEPKSI-EELYQAGLKGI---TRARKGKDSILNGIQRIQD 356
>gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2]
gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis
Aspo-2]
Length = 428
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 16/246 (6%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS- 63
D + + FDE + P V+ E + + + + + +G++ + +
Sbjct: 110 NPDSLRGMYLDGAVFDEVAQMPHRVWTEVIRPALSDRMGWAMFIGTPRGKNALYRLWQDA 169
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP-----IV 118
D ++T E E E + +
Sbjct: 170 RRDPDWFAAMYRASQTGIIEPGELAAAAREMSPEEYEQEFECSFTAAIRGAYFSALIGEA 229
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
++ I + D G A V R + +V Y + +
Sbjct: 230 DKGGRITKVPHDPSLPVHTAWDLGMSDSTAI-WFVQARPGNAFAIVDYYEASGEGLDHYA 288
Query: 179 AALKSWGKWLP-WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
L PHD + +G+ R G++ + ++ GI+
Sbjct: 289 RVLDERRYAYGSHIAPHDIRVRELGTGKSRLEIARALGIRFDIAP------NIPIQDGIN 342
Query: 238 DMLDRM 243
+ +
Sbjct: 343 AVRAML 348
>gi|169343347|ref|ZP_02864353.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169298524|gb|EDS80608.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 415
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/236 (12%), Positives = 80/236 (33%), Gaps = 22/236 (9%)
Query: 18 YVWFDEEPP------EDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASSSDR 69
+ WF+E + + +TL+ P + + + + +
Sbjct: 132 WAWFEEAFQVMNEDDFNKVDMSIRGELPMGYFKQITLSFNPWSEKHWLKKRFFDTKDDNI 191
Query: 70 QVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPILGSGRIFPIVEE-DIVINS 126
+ + +RK + R + + GE + G ++ E + +
Sbjct: 192 LALTTNYKCNEFLGDDDRKLFESMKENNPRRYKIEGLGEWGIADGLVYENFTELEFDVKE 251
Query: 127 LDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+ + + + G+DFG+ P A + + + +++ + + + V +K G
Sbjct: 252 ISKRKGIISVFGLDFGYTNDPTAFICCLVDEKTKELFIFDEHYQKAMSNTDIVNMIKYKG 311
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + + D + + ++QG++ G + + GI ++ D
Sbjct: 312 ------YSKEKIIADSAEPKSIDDI-KKQGIR---RIKAAQKGKDSILNGIQNIQD 357
>gi|256847412|ref|ZP_05552858.1| PBSX family phage terminase, large subunit [Lactobacillus
coleohominis 101-4-CHN]
gi|256716076|gb|EEU31051.1| PBSX family phage terminase, large subunit [Lactobacillus
coleohominis 101-4-CHN]
Length = 386
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+G + + T + + +E DV+ E L R + V P + + Y+
Sbjct: 114 ARGMNAIRGMTSYGAYVNETSLSTHDVFQEILDRCSVPNARVLCDTNPDNPQHWLKVDYI 173
Query: 63 SASSS---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIV 118
S+ + TI++ P + + P R G + G G ++
Sbjct: 174 DKSNEPKNRIKAFHFTIDDNPTLDPTYVSTLKAVTPSGMYYDRSILGLWVTGEGAVYKDF 233
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH- 177
+E +I +P I G+D+G+ H + ++D + Y+V+ + + + +
Sbjct: 234 DERKMIVD-KVPPMARYIAGVDWGYQHYGSIVVFGVDKDDN-WYLVEEHSEKYKEIDYWT 291
Query: 178 ---VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ +GK +P+ +H ++ G+ L G V
Sbjct: 292 DIAHELQEKYGKNMPFYCDTARTEH--------IDHFKHSGINALY-------GWKSVVP 336
Query: 235 GISDMLDRMRSGRWKV 250
GI + M+ GR+ V
Sbjct: 337 GIEIVASLMKQGRFFV 352
>gi|258424837|ref|ZP_05687711.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9635]
gi|257845001|gb|EEV69041.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9635]
Length = 427
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/250 (12%), Positives = 86/250 (34%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSN-TVHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S V + +E D Y + R+ + + L P+
Sbjct: 116 FKGLD-NPEKIKSIKAVSDIVMEEASEFTLDDYTQLTLRLRERKHESKQIFLMFNPVSKL 174
Query: 55 SPIIEHYLSASS--SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + ++ + + + + + +
Sbjct: 175 NWVYKYFFANGVQMEGVLIRQSSYKDNKFLDKMTKNNLEELANRNPAYYKIYALGEFATL 234
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + I + D H G+DFG+ + P A HL + ++ +Y++ Y +
Sbjct: 235 DKLVFPKYEKRIINTDKIRHLPSYFGLDFGYINDPSALIHLKIDIENKKLYIISEYVKKG 294
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K+ G + + + D + ++ R+ G+ G +
Sbjct: 295 MLNDEIAKLIKNLG------FSKEVISADSAEQKSIAEI-RKHGI---GRIKPAIKGKDS 344
Query: 232 VEAGISDMLD 241
+ AGI +
Sbjct: 345 IMAGIQFISQ 354
>gi|256375788|ref|YP_003099448.1| phage terminase, large subunit, PBSX family [Actinosynnema mirum
DSM 43827]
gi|255920091|gb|ACU35602.1| phage terminase, large subunit, PBSX family [Actinosynnema mirum
DSM 43827]
Length = 437
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 21/255 (8%)
Query: 11 WQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ T+ + DE PE + + + R++ + T P + YL +
Sbjct: 118 LRGLTLAGAYVDEITLVPEAFWQQLMGRLSVAGAQLFGTTNPDSPMHWLRVDYLDREHTE 177
Query: 68 ---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED-IV 123
+ + +++ P E+++++ + GE + G I+ ++++
Sbjct: 178 PALGLRSFKFVLDDNPGIPEEKKRQYKAQFTGLWYRRFILGEWVGAEGSIYDMLDDALHC 237
Query: 124 INSLDIPEHWVQIGGMDFGWHHPF--AAGHLVWNRDS-DVIYVVKNYRCREQTPIFHVAA 180
+ D+G +P L + +YVV + + A
Sbjct: 238 RTAPPRERWQAAWMAADYGTSNPTHAVMVVLAVDEQGVPGLYVVAEWEHDGRKKGSLADA 297
Query: 181 L--KSWGKWLPWAWPHDGLQHD---KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ K W GL S L Q R G L N V+ G
Sbjct: 298 VISKRLADWATGVLDGTGLVPTPVLDPSAASLRTQMRADGWPGLRS------ADNRVDVG 351
Query: 236 ISDMLDRMRSGRWKV 250
+ + R V
Sbjct: 352 LRNTASLFAGARLFV 366
>gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900]
Length = 414
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/251 (12%), Positives = 70/251 (27%), Gaps = 18/251 (7%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
D + + ++ DE + E+ + + L A+ G + + K + + Y+
Sbjct: 105 DPDSLRGVGIDFLVLDEFQDISEEAWTQCLRPTLASTGGHAIFIGTPKAYNQLYTVYMQG 164
Query: 65 SSSD------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
Q + +P E E + + SGR++
Sbjct: 165 QDPKKVKAGQWQSWQFPTITSPFIPESEIEAARADMDEKSFKQEFLASFETMSGRVYYPF 224
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+ + GMDF + + + ++VV
Sbjct: 225 DRKEHVGKYPFDPKLPIWIGMDFNIDPMSTVI--MQPQPNGEVWVVDEIVQFGSNTEEIC 282
Query: 179 AALK----SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
++ + K + G Q GE R +G K + +
Sbjct: 283 EEIERKYWRYMKQIVIFPDPAGGQRQHARGESDLDIMREKGFKKILYRRKHP----AIAD 338
Query: 235 GISDMLDRMRS 245
++ + +R+
Sbjct: 339 RVNAVNRMLRT 349
>gi|223044351|ref|ZP_03614386.1| phage terminase, large subunit, pbsx family [Staphylococcus capitis
SK14]
gi|222442319|gb|EEE48429.1| phage terminase, large subunit, pbsx family [Staphylococcus capitis
SK14]
Length = 426
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/250 (11%), Positives = 83/250 (33%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 113 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHDFKQIFLMFNPVSKL 171
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + +E R + + + +
Sbjct: 172 NWVYKYFFEHGEDMKGVMIRQSSYKDNKFLDEITRNNLELLAQRNPAYYKIYALGEFATL 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + + D H G+DFG+ + P A H+ ++++ +Y+++ Y
Sbjct: 232 DKLVFPKYEKRLLNKDELRHLPSYFGLDFGYVNDPSAFIHVKIDKNNKKLYIIEEYVKTG 291
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+K G + + + D + + ++ G++ G
Sbjct: 292 MLNDEIARTIKQLG------YAKEEITADSAEQKSIQEI-KKLGVE---RIKPTRKGKGS 341
Query: 232 VEAGISDMLD 241
V GI ++
Sbjct: 342 VVQGIQFLMQ 351
>gi|66395220|ref|YP_239489.1| ORF005 [Staphylococcus phage 187]
gi|62635572|gb|AAX90683.1| ORF005 [Staphylococcus phage 187]
Length = 446
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/250 (12%), Positives = 79/250 (31%), Gaps = 20/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQ---GLVTLTLTPLKGR 54
K + +K +S + + +E + Y + R+ + + L P+
Sbjct: 135 FKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKL 193
Query: 55 SPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + +++ + + + + + +E R+ + + + +
Sbjct: 194 NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATL 253
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + I S H G+DFG+ + P A H+ + D+ +YV+ Y +
Sbjct: 254 DKLVFPKYEKRIISDKEVGHLPSYFGLDFGYVNDPSAFIHVKIDNDNKKLYVISEYVKKG 313
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+ G + + + D + + + G +
Sbjct: 314 MLNNEIAQVINDLG------YSKEKITADSAEQKSIMEIKT----NGIDRIVPAMKGKDS 363
Query: 232 VEAGISDMLD 241
V AGI +
Sbjct: 364 VMAGIQFVSQ 373
>gi|266622404|ref|ZP_06115339.1| phage terminase, large subunit, PBSX family [Clostridium hathewayi
DSM 13479]
gi|288865857|gb|EFC98155.1| phage terminase, large subunit, PBSX family [Clostridium hathewayi
DSM 13479]
Length = 479
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/290 (13%), Positives = 74/290 (25%), Gaps = 57/290 (19%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E+ +D Q T+ ++ DE PE + R + T P +++
Sbjct: 146 ERSQDLIQGITLAGLFCDEVALMPESFVNQATGRCSVTGSKYWFNCNPDGPYHWFKVNWI 205
Query: 63 ------------------------SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE 98
+ + T+++ +E+ + R Y
Sbjct: 206 DKAIGYLGKEKVAKIREDAAKTGADPALKKLLYVHFTMDDNLSLSEEIKARYRSMYTGVF 265
Query: 99 REARTKGEPILGSGRIFPIVEEDIVINSLD------------IPEHWVQIGGMDFGWHHP 146
E G + G I+ + + + + D+G +P
Sbjct: 266 FERYIMGLWAMAEGIIYDMFDLARNATDTEALAVSYKTKTGHDFWTDERYVSCDYGTQNP 325
Query: 147 FAAGHLVWNRDSDVIYVVKNYRCRE------QTPIFHVAALKSWGKWLPWAWPHDGLQHD 200
A D Y + Y +T L +W +
Sbjct: 326 TAFLLWNKAAD-KKWYCRREYYYSGRDKGRQKTDKEFSDDLTAWLDGIAIKA-----VIL 379
Query: 201 KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
+ AQ + G K+ N V GI + + G +
Sbjct: 380 DPAAASFKAQLEKDGYKV-------KKAKNDVLDGIRFVATLLLQGSIFI 422
>gi|315162649|gb|EFU06666.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0645]
Length = 440
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 74/259 (28%), Gaps = 21/259 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 130 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 189
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + I T+ + P +E+ R Y + +G +L G IF ++
Sbjct: 190 DKLTEKHAIRIHFTMEDNPSLSERVIDRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDKT 249
Query: 122 IVINSLDIPEHWVQ-IGGMDFGWHHPFAAGHLVWNRDS-----DVIYVVKNYRCREQTPI 175
++ L ++ + +D+G + D Y + +
Sbjct: 250 TMVVDLPENTNYKKSYVSVDYGTQNATVFKLWSLPIDGTGNDMPFWYCRDEFYYSGRESS 309
Query: 176 FH---VAALKSWGKWLPWAWPHDGLQHD--KRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ K+ S A ++ G + N
Sbjct: 310 KQKTDAQFVDEMEKFFSINNLSKKKTKILLDPSAASFKAALKQSGFIV-------KSAKN 362
Query: 231 GVEAGISDMLDRMRSGRWK 249
V GI ML M + + K
Sbjct: 363 NVLDGIRTMLSNMDNQKVK 381
>gi|268319311|ref|YP_003292967.1| phage terminase large subunit [Lactobacillus johnsonii FI9785]
gi|262397686|emb|CAX66700.1| phage terminase large subunit [Lactobacillus johnsonii FI9785]
Length = 423
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL---VTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + P+
Sbjct: 113 FKGMD-DPEKIKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKKRQIFCMFNPVSKL 171
Query: 55 SPIIEHYLSAS----SSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPI 108
+ + + S + + T + +E + I D + + T GE
Sbjct: 172 NWTYTTWFAPDVNLDKSRVAIHQSTYKDNQFLDEDNIRTIEDLKNTNPAYYKIYTLGEFA 231
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP E + + G+DFG+ + P A H + + VIYV+ +
Sbjct: 232 TLDKLVFPSFETRRLDPHSSDLVNIPDYFGLDFGYVNDPSAFTHTKIDMKNKVIYVIDEF 291
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ RR G+
Sbjct: 292 VKKGLLNNELAQVIKDLG------YSKEVITADSAEKKSIAE-MRRDGIY---RIRPALK 341
Query: 228 GSNGVEAGISDMLD 241
G + + GI +
Sbjct: 342 GPDSIIQGIQFLQQ 355
>gi|256964516|ref|ZP_05568687.1| phage terminase large subunit [Enterococcus faecalis HIP11704]
gi|256955012|gb|EEU71644.1| phage terminase large subunit [Enterococcus faecalis HIP11704]
Length = 439
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 74/259 (28%), Gaps = 21/259 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 129 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 188
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + I T+ + P +E+ R Y + +G +L G IF ++
Sbjct: 189 DKLTEKHAIRIHFTMEDNPSLSERVIDRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDKT 248
Query: 122 IVINSLDIPEHWVQ-IGGMDFGWHHPFAAGHLVWNRDS-----DVIYVVKNYRCREQTPI 175
++ L ++ + +D+G + D Y + +
Sbjct: 249 TMVVDLPENTNYKKSYVSVDYGTQNATVFKLWSLPIDGTGNDMPFWYCRDEFYYSGRESS 308
Query: 176 FH---VAALKSWGKWLPWAWPHDGLQHD--KRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ K+ S A ++ G + N
Sbjct: 309 KQKTDAQFVDEMEKFFSINNLSKKKTKILLDPSAASFKAALKQSGFIV-------KSAKN 361
Query: 231 GVEAGISDMLDRMRSGRWK 249
V GI ML M + + K
Sbjct: 362 NVLDGIRTMLSNMDNQKVK 380
>gi|329768643|ref|ZP_08260127.1| PBSX family phage terminase [Gemella haemolysans M341]
gi|328836357|gb|EGF86022.1| PBSX family phage terminase [Gemella haemolysans M341]
Length = 407
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 17/244 (6%)
Query: 11 WQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ T + +E E V+ E ++R + + P + + Y+ + S +
Sbjct: 120 IRGMTAFGAYINEASLANETVFKEIISRCSGDGARIVFDTNPDNPEHWLKKEYIDSESEN 179
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSG-RIFPIVEEDIVINS 126
+++ +E+ K I +S P + +G + G G +
Sbjct: 180 IISYHFRLDDNTFLSERYIKNIKESTPSGMFYDRDIEGLWVTGEGIVYSDFDRNKHYFDD 239
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ G+D+G+ H + + + D Y+++ + + + V K +
Sbjct: 240 YSNITFKKKFAGVDWGYSHYGSIVVMGESVDG-KFYLLEEHAYQFKEIDDWVEIAKEIKE 298
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSG 246
D E + + E + + AGI + +
Sbjct: 299 RHGNI----TFYCDSARPEHVD--------RFYRERLNSVNANKERLAGIEQVARLFKKD 346
Query: 247 RWKV 250
+
Sbjct: 347 SLFI 350
>gi|196048452|ref|ZP_03115627.1| phage terminase, large subunit, pbsx family [Bacillus cereus
03BB108]
gi|196020709|gb|EDX59441.1| phage terminase, large subunit, pbsx family [Bacillus cereus
03BB108]
Length = 419
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 87/260 (33%), Gaps = 31/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEE------PPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + E + +T+
Sbjct: 107 FRGLD-DPLKITSITVDVGNLCWAWFEEAYEIEDQHKFETVVESIRGSFDAPDFFKQITV 165
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P + ++ ++ D I T +EQ+R R Y + R AR
Sbjct: 166 TFNPWSENHWLKSYFFDEATQAYDTFAITTTYKCNEWLDEQDRARYESLYVKNPRRARIV 225
Query: 104 -KGEPILGSGRIFPIVE-EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G ++ + D I+ + + G+DFG+ P A + + ++
Sbjct: 226 CDGEWGVADGLVYENFQVRDFDIDEIRQRKDVQSAFGLDFGYTNDPTALTCSLVDLKNET 285
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV + + + A ++ G + + + D + + G++
Sbjct: 286 IYVFDEHSQKGMSNKKIAAMIEKKG------YMKERITADSAEPKSIDE-LESLGIR--- 335
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + GI +
Sbjct: 336 RIEGARKGKDSINNGIQFIQ 355
>gi|257438500|ref|ZP_05614255.1| putative phage terminase, large subunit [Faecalibacterium
prausnitzii A2-165]
gi|257199079|gb|EEU97363.1| putative phage terminase, large subunit [Faecalibacterium
prausnitzii A2-165]
Length = 477
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 95/309 (30%), Gaps = 64/309 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
Y + R +Q ++ FDE + Y R V L T G
Sbjct: 103 MQYTKDRTNYQGKAFDFIGFDELTHFEWEEYSYMMSRNRPTGPGTRVYLRATTNPGGVGH 162
Query: 55 SPIIEHYLSASSSD----------------------RQVIRMTINETP--HYNEQERKRI 90
+ +++ + R I ++ + P N+ +
Sbjct: 163 GWVKARFITPAPPGTPIVEQFPVRMPDGTEKVLERARVFIPSSVFDNPALLENDPDYLAS 222
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ S P E++A G SG++F D VI IP HW G D
Sbjct: 223 LASLPEAEKQALLYGSWDSFSGQVFTEWRNDPGHYQDQRWTHVIAPFAIPRHWKIYRGYD 282
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH-------VAALKSWGKWLP---- 189
FG+ PF+ G + + + + + Y C + ++ + P
Sbjct: 283 FGFSKPFSVGWYAADEEGRLYRIKELYGCTGRPNEGLRIDPVEQARRIREAEQNDPMLKG 342
Query: 190 --WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM---R 244
D D+ GE ++A R P + G + AG R+
Sbjct: 343 RTILGVADPAIFDESRGESIAAMMERG-----PHFLHWVPGDHTRLAGKMQFHYRLAFDG 397
Query: 245 SGR--WKVF 251
GR ++VF
Sbjct: 398 EGRPMFQVF 406
>gi|304437549|ref|ZP_07397505.1| PBSX family phage terminase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369471|gb|EFM23140.1| PBSX family phage terminase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 416
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/263 (14%), Positives = 93/263 (35%), Gaps = 31/263 (11%)
Query: 5 EQGRDKW-QSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY 61
++G +K+ + T+ + DE PE + + L R++ + T P + + Y
Sbjct: 113 DEGSEKFIRGKTLAGAYCDELTLMPERFFKQLLNRLSVPGAKLYSTTNPDSPMHYLYKEY 172
Query: 62 LSASSSDR----QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+++ R V+ +++ P+ + + I SY + G +L G I+ +
Sbjct: 173 VTSEQKLRDGLVSVVHFELDDNPNLTDDYKTNIRSSYSGMWFKRMILGLWVLAEGIIYDM 232
Query: 118 VEEDIVINSLDI----PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR----- 168
++++ + + + D+G +P + + + I++ Y
Sbjct: 233 FSDELLFDDAEFTNTLRSTCRRYIACDYGTKNPMVFLDIYDD--GETIWIPNLYYWDSRK 290
Query: 169 -CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
R++T + AL+ D + D ++ D
Sbjct: 291 KQRQKTDAQYADALEKMVGEEY----PDFIVIDPS--------AASFKLECQGRGFRVKD 338
Query: 228 GSNGVEAGISDMLDRMRSGRWKV 250
N V GI ++ + + ++
Sbjct: 339 ADNSVNDGIREVAKLLTKKKIRI 361
>gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans
AK-01]
gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans
AK-01]
Length = 443
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 10/221 (4%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LS 63
D+ + + DE + PE V+ E + + + + + +G + + Y +
Sbjct: 123 NPDRLRGIYLDGAVLDEMAQMPERVWGEIIRPALSDRLGWAMFIGTPRGHNAFYDLYQFA 182
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV----- 118
S D +ET E + E + +
Sbjct: 183 RSDPDWFCAMYRASETGIVGRDELDAAKKEMTPEQYEQEFECSFSAAIVGAYYGPLIAQA 242
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
E++ I +L + D G A + I VV Q ++V
Sbjct: 243 EKEGRIVTLPVERALPVHTAWDLGMSDSTAVWFFQVSP-GGEIRVVDYLEDAGQGLDYYV 301
Query: 179 AALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKM 218
AL+ PHD + +G+ + G+
Sbjct: 302 RALRERDYLYGTHLAPHDIRVRELGTGKSRLESAKSLGVSF 342
>gi|291460129|ref|ZP_06599519.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417470|gb|EFE91189.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 408
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 21/233 (9%)
Query: 18 YVWFDE-----EPPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASSSDRQ 70
+VW +E E + + +TLT P S + + A
Sbjct: 126 FVWIEEAYEVAEDDFNKLDMSIRGEVPEGYFKQLTLTFNPWSATSWLKARFFDAPDDTIF 185
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE--PILGSGRIFPIVE-EDIVINSL 127
T ++ +R + R R +G+ + G I+P ED + +
Sbjct: 186 TKTTTWQCNEWLDDADRHIFEMMRRQNPRRYRIEGDGEWGIAEGLIYPNHRMEDFDVGEI 245
Query: 128 DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187
E +DFG+ P A + + + IY+ + T +K G
Sbjct: 246 RAQEGVKAAFNLDFGFTDPNAFVCELVDGQAKKIYIFDEWYQSGVTNRIIAETIKEKGYG 305
Query: 188 LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ D + ++ + +G++ G + V+ GI +
Sbjct: 306 GQ------RIICDCAEPKSIAE-LQDEGIRAEASL----KGRDSVQHGIQLIQ 347
>gi|194466764|ref|ZP_03072751.1| phage terminase, large subunit, PBSX family [Lactobacillus reuteri
100-23]
gi|194453800|gb|EDX42697.1| phage terminase, large subunit, PBSX family [Lactobacillus reuteri
100-23]
Length = 421
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 76/252 (30%), Gaps = 22/252 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQGL---VTLTLTPLKGR 54
K + +K +S + V +E D + + R+ + + P+
Sbjct: 113 FKGMD-DPEKIKSIKGLSDVVMEEASEFNQDDFTQLTLRLREPKHKKRQLFCMFNPVSKL 171
Query: 55 SPIIEHYLSAS----SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ + + + + T + + I + + +
Sbjct: 172 NWTYKQWFDPKAKVNPERVSIHQSTYKDNHFLDADNIATIENLKQTNPAYYKIYTLGEFA 231
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP-FAAGHLVWNRDSDVIYVVKNYRC 169
+ E + S+ G+DFG+ + A H+ + ++ IYV++ Y
Sbjct: 232 TLDKLVFPEFEKRRLSIRTLSQLPSYFGLDFGYTNDETAFMHVKVDENTQTIYVMEEYAK 291
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+K G + + + D + ++ R ++ P G
Sbjct: 292 HGMLNDDIARIIKQMG------YSKEVITADAAEPKSIAEIKRDGISRIRPA----KKGK 341
Query: 230 NGVEAGISDMLD 241
+ + G+S M
Sbjct: 342 DSIIQGLSFMQQ 353
>gi|194466550|ref|ZP_03072537.1| phage terminase, large subunit, PBSX family [Lactobacillus reuteri
100-23]
gi|194453586|gb|EDX42483.1| phage terminase, large subunit, PBSX family [Lactobacillus reuteri
100-23]
Length = 421
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 32/251 (12%), Positives = 81/251 (32%), Gaps = 17/251 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+G + + + + +E ++ + E + R + + P + + + Y+
Sbjct: 113 RGASAIRGMSSYGSYINEASLATQEAFQEIIQRCSKPGARIICDTNPDSPQHYLKKDYID 172
Query: 64 ASSSDRQV--IRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEE 120
++ +++ + + + P R G + G G ++ +E
Sbjct: 173 NKDPKARIKTFHFVLDDNTFLPKDYVDSLKAATPSGMYYDRSILGLWVTGEGAVYKDFDE 232
Query: 121 -DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+ + D+P+ G+D+G+ HP A + + D Y+V + + H
Sbjct: 233 RTMTVKREDLPDSLTYTAGVDWGYDHPTAIEIIGHD-DKGNYYLVDEAYGQFEQVDPHWI 291
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
A+ + D E ++ G V GI +
Sbjct: 292 AVAQKFRKKYG--LKMPFYADTARTEHIA--------NFKEHHINAKYGYKNVLDGIERV 341
Query: 240 LDRMRSGRWKV 250
++ ++ V
Sbjct: 342 AKIIKQHKFYV 352
>gi|153954494|ref|YP_001395259.1| putative terminase large subunit [Clostridium kluyveri DSM 555]
gi|153954586|ref|YP_001395351.1| hypothetical protein CKL_1968 [Clostridium kluyveri DSM 555]
gi|219855077|ref|YP_002472199.1| hypothetical protein CKR_1734 [Clostridium kluyveri NBRC 12016]
gi|146347444|gb|EDK33980.1| Phage-related protein [Clostridium kluyveri DSM 555]
gi|152206097|gb|EDK33912.2| putative terminase large subunit [Clostridium kluyveri DSM 555]
gi|219568801|dbj|BAH06785.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 423
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 76/251 (30%), Gaps = 14/251 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
K + T+ DE E + L+R++ T P I Y+
Sbjct: 115 DEGKIRGITIGGWMADEITLHHESFVKQALSRMSLKGAKAFWTTNPDSPYHYIRTEYIDK 174
Query: 65 SSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
+ +++ +E+ ++ I +Y + KG ++ G I+P +E
Sbjct: 175 CKENEYCHWHFDLDDNLTLSEEYKENIKKAYSGLFYDRFIKGLWVMADGVIYPGFDEKKH 234
Query: 124 INSLDIPEHWV--QIGGMDFGWHHPFAAGHLVWNRDSDVIY--VVKNYRCREQTPIFHVA 179
S+D D+G +P + + +V Y +
Sbjct: 235 CISIDEVPRDNLIFYIPCDYGITNPHVYLKAAVRLYEHIPHIFIVDEYYNKGDGGSPKTD 294
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
L S L +R+ G+ +L + N V GIS++
Sbjct: 295 NLFLSDYKDFAKGIKPRNVIIDPSATSLINLFRQDGISVL-------EADNTVIDGISNV 347
Query: 240 LDRMRSGRWKV 250
+ R +
Sbjct: 348 TTWLNDERIHI 358
>gi|13491652|gb|AAK27930.1|AF195901_20 terminase large subunit [Lactobacillus prophage Lj928]
Length = 423
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 33/248 (13%), Positives = 80/248 (32%), Gaps = 23/248 (9%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL---VTLTLTPLKGRSPIIEH 60
+K +S + V +E + Y + R+ + + P+ + +
Sbjct: 119 DPEKIKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMFNPVSKLNWTYQT 178
Query: 61 YLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRI 114
+ S+ + + T + +E + I + + + T GE +
Sbjct: 179 WFDPSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELKNTNPAYYKIYTLGEFATLDKLV 238
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
FP E + G+D+G+ + P A H+ + + +YV+ + +
Sbjct: 239 FPYFETKRLNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMRNKTLYVMDEFVKKGLL 298
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
+K G + + + D + ++ +R G+ G + +
Sbjct: 299 NNQLAQVIKDMG------YSKEVITADSAEKKSIAE-MKRDGIY---RIRPALKGPDSII 348
Query: 234 AGISDMLD 241
GI +
Sbjct: 349 QGIQFLQQ 356
>gi|41179314|ref|NP_958532.1| hypothetical protein Ljo_1439 [Lactobacillus prophage Lj928]
gi|42519311|ref|NP_965241.1| Lj928 prophage protein [Lactobacillus johnsonii NCC 533]
gi|38731443|gb|AAR27373.1| putative protein [Lactobacillus prophage Lj928]
gi|41583599|gb|AAS09207.1| Lj928 prophage protein [Lactobacillus johnsonii NCC 533]
Length = 422
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 33/248 (13%), Positives = 80/248 (32%), Gaps = 23/248 (9%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL---VTLTLTPLKGRSPIIEH 60
+K +S + V +E + Y + R+ + + P+ + +
Sbjct: 118 DPEKIKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMFNPVSKLNWTYQT 177
Query: 61 YLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRI 114
+ S+ + + T + +E + I + + + T GE +
Sbjct: 178 WFDPSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELKNTNPAYYKIYTLGEFATLDKLV 237
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
FP E + G+D+G+ + P A H+ + + +YV+ + +
Sbjct: 238 FPYFETKRLNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMRNKTLYVMDEFVKKGLL 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
+K G + + + D + ++ +R G+ G + +
Sbjct: 298 NNQLAQVIKDMG------YSKEVITADSAEKKSIAE-MKRDGIY---RIRPALKGPDSII 347
Query: 234 AGISDMLD 241
GI +
Sbjct: 348 QGIQFLQQ 355
>gi|66395738|ref|YP_240074.1| ORF009 [Staphylococcus phage 37]
gi|62636161|gb|AAX91272.1| ORF009 [Staphylococcus phage 37]
Length = 419
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/256 (15%), Positives = 79/256 (30%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G T P
Sbjct: 111 AQNPERIKSLKDAQFPYAIAWIEELAEFKTEDEVTTITNSLLRGELDNGLFYKFFYTYNP 170
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S+ D V T P ++ + + ++E R +
Sbjct: 171 PKRKQSWVNKKYESSFQPDNTFVHHSTYLNNPFIAKEFIEEAKAAKAINELRYRWEYLGE 230
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I + + + I +DFG+ P A +++ +IY V
Sbjct: 231 AIGSGVVPFNNLRIETIPKEQFDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRIIYAVDE 290
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + ++
Sbjct: 291 HYGVQISNREFANWLKKKG------YQSDEIYADSAEPKSIAELKQEHSIR---RIKGVK 341
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 KGPDSVEHGEQWLNDL 357
>gi|225405808|ref|ZP_03760997.1| hypothetical protein CLOSTASPAR_05029 [Clostridium asparagiforme
DSM 15981]
gi|225042675|gb|EEG52921.1| hypothetical protein CLOSTASPAR_05029 [Clostridium asparagiforme
DSM 15981]
Length = 475
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 73/280 (26%), Gaps = 49/280 (17%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V+FDE PE + R + P +++
Sbjct: 144 ESSQDLVQGITLAGVFFDEVALMPESFVDQATGRCSVDGSKYWFNCNPAGPYHWFKANWI 203
Query: 63 SAS------------------------SSDRQVIRMTINETPHYNEQERKRIIDSYPLHE 98
+ + T+++ +E+ + R Y
Sbjct: 204 DRAIGYLGKAEVERQKKEAEEKKQDISFKRLLYVHFTMDDNLSLSEEIKARYRSLYTGVF 263
Query: 99 REARTKGEPILGSGRIFPIVEEDIVI----NSLDIPEHWVQIGGMDFGWHHPFAAGHLVW 154
+ G + G I+ + + + D + D+G + A
Sbjct: 264 FKRYILGLWAMAEGIIYDMFDTARHVIRLAAVEDRLIPGGRYVSCDYGTQNALAFLLWNK 323
Query: 155 NRDSDVIYVVKNYRCRE------QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS 208
D V Y + Y ++ + + W S +
Sbjct: 324 GTDG-VWYCTREYYYSGRDIGKQKSDSQYADDFEKWLAGTRIKA-----VIIDPSAASFA 377
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRW 248
+ +G + N V GI + + +G+
Sbjct: 378 VELNNRG-------YSTIKADNDVADGIRLVATLLNTGKI 410
>gi|300361372|ref|ZP_07057549.1| PBSX family phage terminase [Lactobacillus gasseri JV-V03]
gi|300353991|gb|EFJ69862.1| PBSX family phage terminase [Lactobacillus gasseri JV-V03]
Length = 412
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 79/249 (31%), Gaps = 16/249 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + T + + +E E V+ E R + + P + +Y+
Sbjct: 119 GLKSARGFTAYGAYVNEASLANEAVFNEIQNRCSKGGSHIICDTNPDIPTHWLKTNYIDN 178
Query: 65 SSSDRQVI--RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP-IVEED 121
+ D V+ TI++ K + S + G G G ++ ++
Sbjct: 179 KNPDAGVVSFNFTIDDNTTLASDYVKSMKASKIGVFYDRDILGLWATGDGIVYQDFNKDT 238
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+V++ + + F H + + D+D+ Y++ Y+ + + V
Sbjct: 239 MVVDEVPDDLEYYCGVDWGFAKGHENVITVMGDDPDTDISYLIGVYKSTGKYIDYWVDIA 298
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + D E +S + + V GI
Sbjct: 299 QQIQDKRGYGIN---FWCDSARPEYVS--------YFQQQDIQARNADKSVMDGIEYCSS 347
Query: 242 RMRSGRWKV 250
R++ G++KV
Sbjct: 348 RIKLGKFKV 356
>gi|70727357|ref|YP_254273.1| putative phage terminase large subunit [Staphylococcus haemolyticus
JCSC1435]
gi|68448083|dbj|BAE05667.1| putative phage terminase large subunit [Staphylococcus haemolyticus
JCSC1435]
Length = 421
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 76/256 (29%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSIMWIEELGEFKTEDEVTTITNSMLRGELDEGLFYKFYFSYNP 172
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K + ++ S + V T P ++Q + + +E R +
Sbjct: 173 AKRKQHWANKKYETSFQPDNTFVHHSTYLNNPFISKQFIQEAESAKQRNELRYRWEYLGE 232
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I D+ + I +DFG+ P A +++ +IY V
Sbjct: 233 AIGSGVVPFNNLRIEKIPDDLYNSFDNIRNAVDFGYATDPLAFVRWHYDKKKRIIYAVDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + G++
Sbjct: 293 HYGVQISNREFGNWLKKKG------YQSDEIYADSAEPKSIAELKQEHGIR---RIKGVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 344 KGPDSVEHGEQWLDDL 359
>gi|221067857|ref|ZP_03543962.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
KF-1]
gi|220712880|gb|EED68248.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
KF-1]
Length = 434
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 36/246 (14%), Positives = 83/246 (33%), Gaps = 15/246 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ VW +E + + I + LTL P + +++
Sbjct: 122 SIKSFEG--CDIVWVEEAHGVSKKSWDTLIPTIRKEGSEIWLTLNPDMETDETYQRFIAT 179
Query: 65 SSSDRQVIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGE-PILGSGRIFPIVEE 120
D V+ + + P + ++ER++ + + +G+ + +G I+ E
Sbjct: 180 PCPDTWVVEINWRDNPWFPRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEME 239
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPF--AAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+ +++ + + W + A + R + ++ + +T ++V
Sbjct: 240 SVYLDNRARDVPYDPTLPVHTVWDLGWNDAMSIALVQRGPQDVRIIGHIEDSHRTLDWYV 299
Query: 179 AALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
A L+ + PHDG + ++G+ R G VE GI
Sbjct: 300 AKLEKLPYRWGTDYLPHDGKTRNFQTGKSTEQLLRELG----RRSVMVQPRGTDVEEGIK 355
Query: 238 DMLDRM 243
+ M
Sbjct: 356 QVRMLM 361
>gi|54025903|ref|YP_120145.1| putative phage terminase [Nocardia farcinica IFM 10152]
gi|54017411|dbj|BAD58781.1| putative phage terminase [Nocardia farcinica IFM 10152]
Length = 436
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 80/255 (31%), Gaps = 16/255 (6%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + T DE PE+ + + R++ + T P + + +++ +
Sbjct: 117 KIRGMTACLAMVDEATLLPENFWTQLGARLSVPGAKLLATTNPDNPQHYLKVNFIDRAGE 176
Query: 68 DR---QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
T+++ P +++ + G+ + G ++ + +
Sbjct: 177 RGMRLCAWDFTLDDNPGLDDEYVASLKAENQGLFYLRNILGQWVAADGAVYDCYDPAKHL 236
Query: 125 NSLDIPEHWVQI--GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPIF 176
G+D G +P AA + D+ V+Y V +R T +
Sbjct: 237 VKWSELPEMQFYVGVGVDHGTTNPTAAVLIGLGADN-VLYAVDEWRYAPSNKEARWTNVQ 295
Query: 177 HVAALKSWGKWLPWAWPHDGLQHDKRSGE-QLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W P D Q + + + +++ + + V G
Sbjct: 296 LSEGLRGWLAG-PHHPKDDPHQPPRVTAPVHVDQAAADYRVQLKQDGLRNNPAVKDVLYG 354
Query: 236 ISDMLDRMRSGRWKV 250
I + + + ++
Sbjct: 355 IRTVSALFSTDKLRI 369
>gi|139437136|ref|ZP_01771296.1| Hypothetical protein COLAER_00275 [Collinsella aerofaciens ATCC
25986]
gi|133776783|gb|EBA40603.1| Hypothetical protein COLAER_00275 [Collinsella aerofaciens ATCC
25986]
Length = 398
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 71/249 (28%), Gaps = 19/249 (7%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
K Q T +V+ DE EDV+ +R+ T P
Sbjct: 104 SVSKIQGATFEWVYGDEVATWSEDVFQMLKSRLRCEHSHFDGTCNPDSPNHWFKR--FLD 161
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
SD TI + + I D + G+ L G ++P E +
Sbjct: 162 GDSDIYRQDYTIWDGALAPDVIEALIKDYGSGVYYDRYILGKWTLAEGLVYPEWEG--AL 219
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH---VAAL 181
S D+G + FAA D V + V YR + +
Sbjct: 220 ESRYTGSAAKYAVSCDYGTQNAFAALLWA--FDGKVWHAVDEYRYSGRDTGHQKTDADYV 277
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
++ D S A R+ G K G N V GI +
Sbjct: 278 ADMADFVRGLGKPPTFIID-PSATSFIAAMRQAGFK-------TKKGRNDVADGIRETGV 329
Query: 242 RMRSGRWKV 250
+ +G ++
Sbjct: 330 CLGNGTVRI 338
>gi|282851552|ref|ZP_06260917.1| phage terminase, large subunit, PBSX family [Lactobacillus gasseri
224-1]
gi|282557520|gb|EFB63117.1| phage terminase, large subunit, PBSX family [Lactobacillus gasseri
224-1]
Length = 409
Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/251 (14%), Positives = 90/251 (35%), Gaps = 18/251 (7%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+G + T + + +E +V+ E + R + + P + Y+
Sbjct: 115 RGIGAIRGMTSYGAYVNEASLATHEVFQEIVQRCSVRSARIICDTNPDIPTHWLKTDYID 174
Query: 64 ASSSDRQV--IRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEE 120
++ TI++ ++ + + + P R G+ + G G ++ +
Sbjct: 175 NHDPKARIKAFSFTIDDNTFLSKDYVEALKAATPRGMFYDRSILGQWVTGDGIVYQDFNK 234
Query: 121 DIVINSLDIPEHW-VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
D ++ + G+D+G+ HP L ++D + YV+++Y + + + V
Sbjct: 235 DKMVIPKNRVPDGLDYYVGVDWGYEHPNPIILLGDDKDGNT-YVLEDYTQKHKFINYWVK 293
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
++ D + ++ ++ G+ + V GI +
Sbjct: 294 IAQNLQTRFGRNL---IFYADSARPDNVNE-FQSNGLNCINANKN-------VLPGIECV 342
Query: 240 LDRMRSGRWKV 250
+MR G++ V
Sbjct: 343 AKKMREGKFYV 353
>gi|256027856|ref|ZP_05441690.1| PBSX family phage terminase large subunit [Fusobacterium sp. D11]
gi|289765807|ref|ZP_06525185.1| phage terminase [Fusobacterium sp. D11]
gi|289717362|gb|EFD81374.1| phage terminase [Fusobacterium sp. D11]
Length = 424
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 35/269 (13%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQG--LVTLT 47
+ ++ K S +V + W +E E ++ E + + + LT
Sbjct: 109 FRGFD-DPLKITSISVSVGSLCWCWVEEAYELTDETAFNMLDESIRGVVEEPLFKQIILT 167
Query: 48 LTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KG 105
P R + + + + + +E ++K D + R + G
Sbjct: 168 FNPWNERHWLKPRFFDRIAPNILALTTNYLCNEWLDEADKKLFEDMKINNPRRYQVAGLG 227
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIG--GMDFGWH-HPFAAGHLVWNRDSDVIY 162
+ G ++ +E + + G+DFG+ P A + +++ IY
Sbjct: 228 NWGIVDGLVYENWQELEFDWREILNKRQKAKAVFGLDFGYTNDPAAFFCGILDQEQKEIY 287
Query: 163 VVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPEC 222
V + ++++ G D + + + G+
Sbjct: 288 VFDEIYQKGMQNTAIYSSIEKLGFKKEII------VADSAEPKSI-DHLKSLGLY---RI 337
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G + V AGI + D +K+F
Sbjct: 338 KASKKGKDSVNAGIQFIQD------FKIF 360
>gi|329735579|gb|EGG71866.1| phage terminase, large subunit, PBSX family [Staphylococcus
epidermidis VCU028]
Length = 420
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 112 AQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNP 171
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D V T + P ++Q + + +E R +
Sbjct: 172 PKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQEAESTKERNELRYRWEYMGE 231
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I ++ + + I G+DFG+ P A +++ VIY +
Sbjct: 232 AIGSGVVPFNNLQIETIPQEMIDGFDNIRNGLDFGYADDPLAFVRWHYDKKKRVIYAIDE 291
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Y + + + + + D + D + ++ + GMK +
Sbjct: 292 YYGVQISNRQYANEMWKRK------YQSDDIYADHAEPKSIAELKQEHGMKKVRP---VK 342
Query: 227 DGSNGVEAGISDMLDR 242
G + E G + D
Sbjct: 343 KGPDSREYGEQWLSDL 358
>gi|187251258|ref|YP_001875740.1| phage terminase large subunit [Elusimicrobium minutum Pei191]
gi|186971418|gb|ACC98403.1| Phage terminase, large subunit [Elusimicrobium minutum Pei191]
Length = 397
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 90/239 (37%), Gaps = 19/239 (7%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINAT-----QGLVTLTLTPLKG 53
+ + +K +S +Y+W +E + Y LTR++A + + LTL P
Sbjct: 105 FFSLD-NPEKIKSAEFNYIWMEEATEFTYEDYVTLLTRLSAPIKEPYKNQIFLTLNPSDS 163
Query: 54 RSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
S I + LSA + Q+I+ + + P ++ ++ + E R G+ +
Sbjct: 164 NSWIAKKLLSAQ--NTQIIKSSYKDNPFLSKDYINTLLGLKDIDENYYRVFALGQWGANK 221
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+I I G+DFG+++P A L + + +Y + T
Sbjct: 222 NIVYDNYTF---VDEIKNTDNVIWGLDFGFNNPSALVKLYISDEG--VYTEEKLYKSGLT 276
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
A +K+ + +P + H+ + D +++ G + P G V
Sbjct: 277 NS---ALIKNLAEIIPPSQRHESIYADAAEPARIAEI-SEAGFNIHPALKDVKAGILSV 331
>gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44]
gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44]
Length = 436
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 85/246 (34%), Gaps = 15/246 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ VW +E + + I + LTL P + +++
Sbjct: 122 SIKSFEG--CDIVWVEEAHGVSKKSWDTLIPTIRKEGSEIWLTLNPDMETDETYQRFIAT 179
Query: 65 SSSDRQVIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGE-PILGSGRIFPIVEE 120
S D V+ + + P + ++ER++ + + +G+ + +G I+ E
Sbjct: 180 PSPDTWVVEINWRDNPWFPRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEME 239
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPF--AAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+ +++ + + W + A + R + ++ + +T ++V
Sbjct: 240 SVYLDNRARDVPYDPTLPVHTVWDLGWNDAMSIALVQRGPQDVRIIGHIEDSHRTLDWYV 299
Query: 179 AALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
A L+ + PHDG + ++G+ R G + VE GI
Sbjct: 300 AKLEKLPYRWGTDYLPHDGKTKNFQTGKSTEQLLRELG----RRSVMVQPRATDVEEGIK 355
Query: 238 DMLDRM 243
+ M
Sbjct: 356 QVRMLM 361
>gi|229074033|ref|ZP_04207093.1| Phage terminase large subunit [Bacillus cereus F65185]
gi|228709108|gb|EEL61222.1| Phage terminase large subunit [Bacillus cereus F65185]
Length = 399
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/250 (14%), Positives = 78/250 (31%), Gaps = 16/250 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T DE P+ + + R + + + P + +
Sbjct: 100 ENSQDTLQGLTAAGSLADEAALFPKSFIDQMIGRCSVDGAKIFMNCNPGSPYHFVKTELI 159
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ T+++ +E+ + R + + G ++ G I+ + E
Sbjct: 160 DKKKEKLVCHLKFTMDDNLSLSEKVKDRFKRMFSGVFYQRYILGLWVMAEGLIYSMFNEA 219
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ ++ D+G +P A +W + Y VK Y H A
Sbjct: 220 EHVVPSHPRKYEQYYISCDYGTQNPMA--FGLWGLSGGIWYKVKEY---------HHDAR 268
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF--DDGSNGVEAGISDM 239
K + + D ++ +++ +L + + N V GI ++
Sbjct: 269 KRNLQKSDEQYYEDLVEFANGLTKRIIVDPSASSFIILLKQKGWKVKKAKNDVLDGIRNV 328
Query: 240 LDRMRSGRWK 249
+ + K
Sbjct: 329 ATALTTELIK 338
>gi|307270316|ref|ZP_07551624.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4248]
gi|306513370|gb|EFM81994.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4248]
Length = 427
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSYFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEIKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|206971568|ref|ZP_03232518.1| phage terminase, large subunit, pbsx family [Bacillus cereus
AH1134]
gi|206733553|gb|EDZ50725.1| phage terminase, large subunit, pbsx family [Bacillus cereus
AH1134]
Length = 423
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 79/257 (30%), Gaps = 30/257 (11%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T DE P+ + + R + + + P + +
Sbjct: 124 ENSQDTLQGLTAAGSLADEAALFPKTFIDQMIGRCSVDGAKIFMNCNPGSPYHFVKTELI 183
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ T+++ E+ + R + + G ++ G I+ + ED
Sbjct: 184 DKKKEKLVCHLKFTMDDNLSLPEKVKDRFKRMFSGVFYQRYILGLWVMAEGLIYSMFNED 243
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ S ++ D+G +P A +W + Y VK Y H A
Sbjct: 244 EHVVSSHPRKYEQYYISCDYGTQNPMA--FGLWGLCGCIWYKVKEY---------HHDAR 292
Query: 182 KSWGKWLPWAWPHDGLQHDKR---------SGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
K + + D ++ S +++G K+ N V
Sbjct: 293 KKNLQKSDEQYYDDLVEFANGLTKCIIVDPSASSFIILLKQKGWKV-------KKAKNDV 345
Query: 233 EAGISDMLDRMRSGRWK 249
GI ++ + + K
Sbjct: 346 LDGIRNVATALTTELIK 362
>gi|291334534|gb|ADD94186.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C1220]
gi|291335526|gb|ADD95137.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C491]
gi|291335665|gb|ADD95272.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C846]
Length = 354
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 72/257 (28%), Gaps = 19/257 (7%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++ V DE +V+FE + + +G TP S + +
Sbjct: 44 NAMALRGRSLSGVVLDEAAFMDAEVWFEVIRPALADKEGWALFISTPDGTASWFYDLWCY 103
Query: 64 ASSS---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ Q T + + ++ E + + +G + +
Sbjct: 104 VPDDETNEWQRWSYTTIDGGNVSKHEVEAARAQLDTRTFRQEFEASFENLTGLVAISFSD 163
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE--QTPIFHV 178
+ + + G+DF + ++ + +YV T F
Sbjct: 164 ENISQEAKDISIQPLLLGVDFNVDPMSGICAV---KNGETLYVFDEVMLTGGATTWDFAE 220
Query: 179 AALKSWGKWLPWAWPHD---GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN--GVE 233
+ +G D G + G A RR G + + + V
Sbjct: 221 EVTRRYGVDRRIIACPDPTGGARKTSGVGVTDHAILRRSGFTVQSPRSPWKIRDKITAVN 280
Query: 234 AGISDMLDRMRSGRWKV 250
G+ D + R K+
Sbjct: 281 TGLMDAS---GARRVKI 294
>gi|291337121|gb|ADD96636.1| hypothetical protein Syncc9605_0456 [uncultured organism
MedDCM-OCT-S12-C92]
Length = 354
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 72/257 (28%), Gaps = 19/257 (7%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++ V DE +V+FE + + +G TP S + +
Sbjct: 44 NAMALRGRSLSGVVLDEAAFMDAEVWFEVIRPALADKEGWALFISTPDGTASWFYDLWCY 103
Query: 64 ASSS---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ Q T + + ++ E + + +G + +
Sbjct: 104 VPDDETNEWQRWSYTTIDGGNVSKHEVEAARAQLDTRTFRQEFEASFENLTGLVAISFSD 163
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE--QTPIFHV 178
D + + G+DF + ++ + +YV T F
Sbjct: 164 DNISTEAKDISIQPLLLGVDFNVDPMSGICAV---KNGETLYVFDEVMLTGGATTWDFAE 220
Query: 179 AALKSWGKWLPWAWPHD---GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN--GVE 233
+ +G D G + G A RR G + + + V
Sbjct: 221 EVTRRYGVDRRIIACPDPTGGARKTSGVGVTDHAILRRSGFTVQSPRSPWKIRDKITAVN 280
Query: 234 AGISDMLDRMRSGRWKV 250
G+ D + R K+
Sbjct: 281 TGLMDAS---GARRVKI 294
>gi|300362021|ref|ZP_07058198.1| PBSX family phage terminase [Lactobacillus gasseri JV-V03]
gi|300354640|gb|EFJ70511.1| PBSX family phage terminase [Lactobacillus gasseri JV-V03]
Length = 409
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 89/251 (35%), Gaps = 18/251 (7%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+G + T + + +E +V+ E + R + + P + Y+
Sbjct: 115 RGIGAIRGMTSYGAYINEASLATHEVFQEIVQRCSVRSARIICDTNPDIPTHWLKTDYID 174
Query: 64 ASSSDRQV--IRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEE 120
++ TI + ++ + + + P R G+ + G G ++ +
Sbjct: 175 NHDPKARIKAFSFTIGDNTFLSKDYVEALKAATPRGMFYDRSILGQWVTGDGIVYQDFNK 234
Query: 121 DIVINSLDIPEHW-VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
D +I + G+D+G+ HP L ++D + YV+++Y + + + V
Sbjct: 235 DTMIIPRNRVPDGLDYYVGVDWGYEHPNPIILLGDDKDGNT-YVLEDYTQKHKFINYWVE 293
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K+ D + ++ ++ G+ + V GI +
Sbjct: 294 IAKNLQTRFGRNL---IFYADSARPDNVNE-FQSNGLNCINANKN-------VLPGIECV 342
Query: 240 LDRMRSGRWKV 250
+MR G++ V
Sbjct: 343 ARKMREGKFYV 353
>gi|251810445|ref|ZP_04824918.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
gi|251806049|gb|EES58706.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
Length = 420
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 112 AQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNP 171
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D V T + P ++Q + + +E+ R +
Sbjct: 172 PKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGE 231
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I ++ + + I G+DFG+ P A +++ VIY +
Sbjct: 232 AIGSGVVPFNNLQIETIPQEMIDGFDNIRNGLDFGYADDPLAFVRWHYDKKKRVIYAIDE 291
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Y + + + + + D + D + ++ + GMK +
Sbjct: 292 YYGVQISNRQYANEMWKRK------YQSDDIYADHAEPKSIAELKQEHGMKKVRP---VK 342
Query: 227 DGSNGVEAGISDMLDR 242
G + E G + D
Sbjct: 343 KGPDSREYGEQWLSDL 358
>gi|256956438|ref|ZP_05560609.1| Lj928 prophage protein [Enterococcus faecalis DS5]
gi|256946934|gb|EEU63566.1| Lj928 prophage protein [Enterococcus faecalis DS5]
gi|315034567|gb|EFT46499.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0027]
gi|315161409|gb|EFU05426.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0645]
Length = 427
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEIKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|256962625|ref|ZP_05566796.1| Lj928 prophage protein [Enterococcus faecalis HIP11704]
gi|257087218|ref|ZP_05581579.1| Lj928 prophage protein [Enterococcus faecalis D6]
gi|256953121|gb|EEU69753.1| Lj928 prophage protein [Enterococcus faecalis HIP11704]
gi|256995248|gb|EEU82550.1| Lj928 prophage protein [Enterococcus faecalis D6]
gi|315026019|gb|EFT37951.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2137]
Length = 427
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEIKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|256853532|ref|ZP_05558898.1| Lj928 prophage protein [Enterococcus faecalis T8]
gi|256711138|gb|EEU26180.1| Lj928 prophage protein [Enterococcus faecalis T8]
Length = 430
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 120 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 178
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 179 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 238
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 239 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 298
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 299 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEIKK----NGITRIRAAKK 348
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 349 GPDSIRQGLSFLLQ 362
>gi|315143442|gb|EFT87458.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2141]
gi|315157239|gb|EFU01256.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0043]
Length = 427
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEIKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|257422201|ref|ZP_05599191.1| prophage protein [Enterococcus faecalis X98]
gi|257164025|gb|EEU93985.1| prophage protein [Enterococcus faecalis X98]
Length = 427
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEVKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|260887046|ref|ZP_05898309.1| phage terminase, large subunit, PBSX family [Selenomonas sputigena
ATCC 35185]
gi|330839176|ref|YP_004413756.1| phage terminase, large subunit, PBSX family [Selenomonas sputigena
ATCC 35185]
gi|260863108|gb|EEX77608.1| phage terminase, large subunit, PBSX family [Selenomonas sputigena
ATCC 35185]
gi|329746940|gb|AEC00297.1| phage terminase, large subunit, PBSX family [Selenomonas sputigena
ATCC 35185]
Length = 416
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 33/263 (12%)
Query: 5 EQGRDKW-QSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY 61
++G +K+ + T+ + DE PE + + L R++ + T P + + Y
Sbjct: 113 DEGSEKFIRGKTLAGAYCDELTLMPERFFKQLLNRLSVPGAKLYSTTNPDSPMHYLYKEY 172
Query: 62 LSASSSDR----QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+++ R V+ +++ P+ + + I SY + G +L G I+ +
Sbjct: 173 VTSDEKLRDGLVSVVHFELDDNPNLTDDYKTNIRSSYSGMWFKRMILGLWVLAEGVIYDM 232
Query: 118 VEEDIVINSLDI----PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR----- 168
+D++ + + + D+G +P + + D I++ Y
Sbjct: 233 FSDDLLFDDAEFTNTLKSTCRRHIACDYGTKNPMVFLDIYDD--GDTIWIPAMYYWDSRK 290
Query: 169 -CREQTPIFHVAALKSW-GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
R++T + L+ G+ P D ++
Sbjct: 291 EQRQKTDAQYADDLERMLGEEYPDFIVIDP-------------SAASFKLECQGRGFRVK 337
Query: 227 DGSNGVEAGISDMLDRMRSGRWK 249
D N V GI ++ + + +
Sbjct: 338 DADNSVNDGIREVAKLLTKKKIR 360
>gi|312951247|ref|ZP_07770149.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0102]
gi|310630781|gb|EFQ14064.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0102]
Length = 427
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEVKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|315033367|gb|EFT45299.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0017]
Length = 424
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQG---LVTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + L P+
Sbjct: 117 FKGMD-DPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKL 175
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GEPI 108
+ + + + + + T + + + +K I D + R GE
Sbjct: 176 NWVYKSFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFA 235
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP + + ++ G+DFG+ + P A H + + IYV++ Y
Sbjct: 236 TLDKLVFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEY 295
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G + + + D + ++ + +
Sbjct: 296 VKKGLLNDEISTVIKDLG------YAKEVITADSAEKKSIAEVKK----NGITRIRAAKK 345
Query: 228 GSNGVEAGISDMLD 241
G + + G+S +L
Sbjct: 346 GPDSIRQGLSFLLQ 359
>gi|260664700|ref|ZP_05865552.1| PBSX family phage terminase, large subunit [Lactobacillus jensenii
SJ-7A-US]
gi|260561765|gb|EEX27737.1| PBSX family phage terminase, large subunit [Lactobacillus jensenii
SJ-7A-US]
Length = 408
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 32/250 (12%), Positives = 82/250 (32%), Gaps = 18/250 (7%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+G + T + + +E V+ E + R + + P + Y+
Sbjct: 115 RGLGAIRGMTSYGAYVNEASLATYAVFQEIIQRCSQPNARIICDTNPDTPTHWLKAKYID 174
Query: 64 ASSSD--RQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEE 120
+ +V TI++ + K + S P + KG + G G ++P ++
Sbjct: 175 NKKPEAKIKVYNFTIDDNTFLDPDYVKTLKASTPSGMFYDRNIKGLWVTGDGVVYPDFDK 234
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
++ +P+ G+D+G+ H + + + Y+++ + + + + V
Sbjct: 235 KRMVVD-KVPDGLTCYCGVDWGFEHKGSLLVFGDDEQGNT-YLIEEHTHQHRFISYWVDL 292
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
D + L+ + + + G+ +
Sbjct: 293 AHKIQDKYGHNIN---FWCDSARPDNLNE--------FQTANISAFNAKKAILPGVESVA 341
Query: 241 DRMRSGRWKV 250
M++G + V
Sbjct: 342 KLMKTGHFFV 351
>gi|229176385|ref|ZP_04303827.1| Phage terminase large subunit [Bacillus cereus MM3]
gi|228607075|gb|EEK64455.1| Phage terminase large subunit [Bacillus cereus MM3]
Length = 413
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 11/247 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ +FDE + R + V P +L
Sbjct: 107 EASQDLIQGITLAGCFFDEVVLMVRSFVNQATGRCSVEGSKVWFNCNPGGPYHWFKTEWL 166
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + IR T+++ +E+ ++R Y + G SG IF + +ED
Sbjct: 167 DKAKEKNLLHIRFTMDDNLSLSEKVKQRYYKMYSGVFFKRYILGLWAAASGLIFDMFDED 226
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV--WNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ D+G + G + +V Y VK YR +
Sbjct: 227 KHKVPTIEREYVEYFVSCDYGTQNAMVYGLWGKCIEKGKEVWYKVKEYRYSGRETEKQKT 286
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ + + + D ++ ++ N V+ GI ++
Sbjct: 287 DQEYYEDFEKFV--GDLPIRGTVVDPSAASFIAL----LVRNKRKVYKARNNVKEGIGNV 340
Query: 240 LDRMRSG 246
+ +G
Sbjct: 341 GVALNTG 347
>gi|251778259|ref|ZP_04821179.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082574|gb|EES48464.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 416
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 29/258 (11%), Positives = 79/258 (30%), Gaps = 28/258 (10%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPEDVYFE----GLTRINATQGLVTLTLTPLKGRS 55
K + ++ +S + + +E D + R V + P+ +
Sbjct: 106 FKGLD-DPERIKSINGIDDIIVEECTEIDDFTFDQLCLRLRSKKPYNQVHVMFNPVSKSN 164
Query: 56 PIIEHYLSASS-------SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK--GE 106
+ + + + ++ V++ T + + +++ + R GE
Sbjct: 165 WVFSRWFNPMNSNPRTDLNNTMVLKTTYRDNKFLPQDYIDNLLEMKATNRVYYRIYALGE 224
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGG--MDFGWH-HPFAAGHLVWNRDSDVIYV 163
S ++ E + E++ + +DFG+ P A G + + + +I++
Sbjct: 225 FATLSKLVYTNWEVKEFDYKQILKENYNRQAVFNLDFGYTNDPTAFGAEILDEPNKIIWI 284
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
++ + + G D + + +R G+
Sbjct: 285 FDEFQEKGLLNDEIAEKITDLGYRKEVIVC------DSAEPKSIDE-LKRNGIN---RAV 334
Query: 224 TFDDGSNGVEAGISDMLD 241
G + + GI +
Sbjct: 335 PSIKGRDSIINGIQLLQQ 352
>gi|56964603|ref|YP_176334.1| terminase large subunit G2p [Bacillus clausii KSM-K16]
gi|56910846|dbj|BAD65373.1| terminase large subunit G2p [Bacillus clausii KSM-K16]
Length = 426
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 74/242 (30%), Gaps = 24/242 (9%)
Query: 16 VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTPL-KGRSPIIEHYLSAS 65
+ W +E E L R G + P + +S + + Y ++
Sbjct: 128 FAFAWIEELAEFKTEDEVTTITNSLLRGELDNGLFYKFFYSYNPPKRKQSWVNKKYETSF 187
Query: 66 SS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ V T + P ++Q + + +E+ R + I P +
Sbjct: 188 QPTNTFVHHSTYLDNPFISKQFIEEAEATKERNEKRYRWEYLGEAIGSGIVPFDNLTVKP 247
Query: 125 ---NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + G D+G+ P+A +++ + IY + ++ +
Sbjct: 248 GIITDEMVAQFDNIRQGQDYGYGPDPYAFVRWHYDKKKNGIYAIDELYGQKISNREASKW 307
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+K G D + + Q + G++ G + VE G +
Sbjct: 308 IKKKGYDRQEI------ITDSSEPKSIDEQKSQHGIR---RIRGAKKGPDSVEYGEEWLD 358
Query: 241 DR 242
D
Sbjct: 359 DL 360
>gi|196037176|ref|ZP_03104491.1| phage terminase, large subunit, pbsx family [Bacillus cereus W]
gi|195990280|gb|EDX54333.1| phage terminase, large subunit, pbsx family [Bacillus cereus W]
Length = 436
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 77/247 (31%), Gaps = 11/247 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T ++FDE + + R++ T + P E +L
Sbjct: 130 ESSQDLIQGITAAGMFFDEVALMVQSFVNQATGRLSVTGSKMWFNCNPAGPYHWFKEKWL 189
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + ++++ +E+ ++R Y KGE SG IF + +E+
Sbjct: 190 DQKKEKNLLHLKFSMDDNLSLDEKTKRRYHRMYSGVFYRRYIKGEWAAASGLIFDMFDEN 249
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV--WNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ D+G + G + +V Y VK YR +
Sbjct: 250 KHKVPTIQREYVEYFVSCDYGTQNAMVYGLWGKCIEKGEEVWYKVKEYRYSGRETEKQKT 309
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ D ++ ++ N V+ GI ++
Sbjct: 310 --DQEYYEDFEGFVGDLPIRGTVVDPSAASFIAL----LVRNKRKVYKARNNVKEGIGNV 363
Query: 240 LDRMRSG 246
+ +G
Sbjct: 364 GVALNTG 370
>gi|228937110|ref|ZP_04099813.1| Phage terminase large subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228822570|gb|EEM68496.1| Phage terminase large subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 375
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 11/247 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ +FDE + R + V P +L
Sbjct: 69 EASQDLIQGITLAGCFFDEVVLMVRSFVNQATGRCSVEGSKVWFNCNPGGPYHWFKTEWL 128
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + IR T+++ +E+ ++R Y + G SG IF + +ED
Sbjct: 129 DKAKEKNLLHIRFTMDDNLSLSEKVKQRYYKMYSGVFFKRYILGLWAAASGLIFDMFDED 188
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV--WNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ D+G + G + +V Y VK YR +
Sbjct: 189 KHKVPTIPREYVEYFVSCDYGTQNAMVYGLWGKRIEKGKEVWYKVKEYRYSGRETEKQKT 248
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ + + + D ++ ++ N V+ GI ++
Sbjct: 249 DQEYYEDFEKFV--GDLPIRGTVVDPSAASFIAL----LVRNKRKVYKARNNVKEGIGNV 302
Query: 240 LDRMRSG 246
+ +G
Sbjct: 303 GVALNTG 309
>gi|329919929|ref|ZP_08276833.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
SPIN 1401G]
gi|328936867|gb|EGG33301.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
SPIN 1401G]
Length = 409
Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 92/258 (35%), Gaps = 21/258 (8%)
Query: 2 KAY---EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSP 56
KAY E+GRD + T + +E V+ E R +A + + P
Sbjct: 108 KAYTGSERGRDSIRGMTAWGAYINEASLAKASVFSEIQKRCSAPEARIICDTNPDAPTHW 167
Query: 57 IIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGR 113
+ ++Y+ + + T ++ P ++ ++++ S P + G G G
Sbjct: 168 LKKNYIDNTDPKAGIKTFFFTFDDNPTLDDDYKEKLKASTPSGVFYDRDILGLWCTGEGV 227
Query: 114 IFPIVEE-DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
++ ++ + I+ +P G+D+G+ H + + Y+++ + + +
Sbjct: 228 VYRDFDQSTMTIDRYKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNT-YLIEEHAHKHR 286
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ V + P D + L+ G++ + +
Sbjct: 287 FIDYWVDLAHDVQQKYGSTIP---FWCDSARPDNLNEFLI-HGIRAYN-------ANKAI 335
Query: 233 EAGISDMLDRMRSGRWKV 250
+GI + M++ + V
Sbjct: 336 NSGIEAVGSLMKAKHFFV 353
>gi|327198351|ref|YP_004306925.1| terminase large subunit [Streptococcus phage Dp-1]
gi|314912653|gb|ADT64044.1| terminase large subunit [Streptococcus phage Dp-1]
Length = 463
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 85/267 (31%), Gaps = 27/267 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ ++ DE PE + R + T + + P ++++
Sbjct: 132 ESSQDLIQGVTLAGIFCDEVALMPESFVNQATGRCSVTGSKMWFSCNPANPNHYFKKNWI 191
Query: 63 SASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
R + T+++ P + ++R Y R+ G + G ++ + E+
Sbjct: 192 DKQVEKRILYLHFTMDDNPSLTDSIKRRYEKMYAGVFRKRFILGLWVTADGLVYSMFNEE 251
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ L+I E DFG ++ G +++ +++++Y + L
Sbjct: 252 QHVKKLNI-EFDRLFVAGDFGIYNATTFGLYGFSKRHKRYHLIESYYHSGREAE---EQL 307
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYR--------------------RQGMKMLPE 221
+ + K L R ++ + +
Sbjct: 308 TEADVNSNIQFSSVLQKTTKEYANDLVDMIRGKQIEYIILDPSASAMIVELQKHPYIARK 367
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRW 248
N V GIS + + R+
Sbjct: 368 NIPIIPARNDVTLGISFHAELLAENRF 394
>gi|291334627|gb|ADD94276.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C231]
Length = 320
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 72/257 (28%), Gaps = 19/257 (7%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++ V DE +V+FE + + +G TP S + +
Sbjct: 44 NAMALRGRSLSGVVLDEAAFMDAEVWFEVIRPALADKEGWALFISTPDGTASWFYDLWCY 103
Query: 64 ASSS---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ Q T E + ++ E + + +G + +
Sbjct: 104 VPEDETGEWQRWSYTTIEGGNVSKHEVEAARAQLDNRTFRQEFEASFENLTGLVAISFSD 163
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE--QTPIFHV 178
+ + + G+DF + ++ + +YV T F
Sbjct: 164 ENISQEAKDISIQPLLLGVDFNVDPMSGICAV---KNGETLYVFDEIMLTGGATTWDFAE 220
Query: 179 AALKSWGKWLPWAWPHD---GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN--GVE 233
+ +G D G + G A RR G + + + V
Sbjct: 221 EVTRRYGVDRRVIACPDPTGGARKTSGVGVTDHAILRRSGFTVQSPRSPWKIRDKITAVN 280
Query: 234 AGISDMLDRMRSGRWKV 250
G+ D + R K+
Sbjct: 281 TGLMDAS---GARRVKI 294
>gi|325956963|ref|YP_004292375.1| prophage protein [Lactobacillus acidophilus 30SC]
gi|325333528|gb|ADZ07436.1| prophage protein [Lactobacillus acidophilus 30SC]
Length = 422
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 79/254 (31%), Gaps = 24/254 (9%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQGL---VTLTLTPLKGR 54
K + +K +S + V +E + Y + R+ + + P+
Sbjct: 113 FKGMD-DPEKIKSIKGLSDVVMEEASEFTANDYTQLTLRLREPKHKQRQIFCMFNPVSKL 171
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPI 108
+ + + ++ + + T + + + K I D + + T GE
Sbjct: 172 NWTYQTWFDPNAEYDKKRVVIHQSTYKDNKFLDAENIKTIEDLKRTNPAYYKIYTLGEFA 231
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNY 167
+FP E + G+D+G+ + P A H+ + + +YV+ +
Sbjct: 232 TLDKLVFPYFETRRLNPRDPKLLALNDYFGLDYGFVNDPSAFMHIKLDMKNKKLYVMDEF 291
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ +K G D + + + RR G+
Sbjct: 292 VKKGLLNNQLAQVIKDMGYRKEII------TADSAEKKSI-EEMRRAGIY---RIRPALK 341
Query: 228 GSNGVEAGISDMLD 241
G + + G+ +
Sbjct: 342 GPDSIIQGLQFLQQ 355
>gi|90592610|ref|YP_529870.1| putative phage terminase large subunit B [Lactobacillus phage KC5a]
gi|89891939|gb|ABD78812.1| putative phage terminase large subunit B [Lactobacillus phage KC5a]
Length = 409
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 37/249 (14%), Positives = 85/249 (34%), Gaps = 24/249 (9%)
Query: 11 WQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ T + + +E DV+ E L R + + P + Y+
Sbjct: 120 IRGMTSYGAYVNEASLATHDVFQEILQRCSIEGARIICDTNPDIPTHWLKTDYIDNHDPK 179
Query: 69 --RQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEEDIVIN 125
+ TI++ ++ + I + P R G+ + G G ++ +D ++
Sbjct: 180 ARIKSFTFTIDDNTFLSKDYVESIKAATPRGMFYDRGILGQWVTGDGIVYQDFNKDTMVI 239
Query: 126 SLDIPEHW-VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH---VAAL 181
+ G+D+G+ HP L ++D + YV+++Y + + + L
Sbjct: 240 PKNRVPDGLDYYVGVDWGYEHPNPIILLGDDKDGNT-YVLEDYTQKHKFINYWVKVAQNL 298
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
++ + +++ G+ + V GI +
Sbjct: 299 QTRFGRNLIFYADSAR-------PDNVNEFQSNGLNCINANKN-------VLPGIECVAR 344
Query: 242 RMRSGRWKV 250
+MR G++ V
Sbjct: 345 KMREGKFYV 353
>gi|261209747|ref|ZP_05924059.1| phage terminase large subunit [Enterococcus faecium TC 6]
gi|289567070|ref|ZP_06447466.1| PBSX family phage terminase, large subunit [Enterococcus faecium
D344SRF]
gi|260076297|gb|EEW64112.1| phage terminase large subunit [Enterococcus faecium TC 6]
gi|289161121|gb|EFD09025.1| PBSX family phage terminase, large subunit [Enterococcus faecium
D344SRF]
Length = 414
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 88/248 (35%), Gaps = 16/248 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + T + + +E ++V+ E ++R + T + P + + Y+
Sbjct: 116 GVGAIRGMTAYGAYINEASLARQEVFAEIISRCSGTGARILADTNPDNPEHWLKKEYIDN 175
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVE-EDI 122
S Q +++ +E+ R I +S P + KG + G ++ +
Sbjct: 176 PSKSIQSFHFELDDNTFLSERYRNNIKESTPSGMFYDRDIKGLWVSAEGVVYRDFDASKH 235
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I S D+P G+D+G+ H + + D Y+++ + + + + V K
Sbjct: 236 YIQSKDLPPLSNFYCGVDWGYEHWGSIVVIGET-DDGTAYLIEEHATQFEEIDYWVDIAK 294
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ P D E ++ + + E + +G+ ++ R
Sbjct: 295 GIQERYGLRVP---FYCDSARPEHVA--------RFVREKVNAKNAHKARLSGVEEVAKR 343
Query: 243 MRSGRWKV 250
+ + +
Sbjct: 344 FKQDKLFI 351
>gi|229188177|ref|ZP_04315256.1| Phage terminase large subunit [Bacillus cereus BGSC 6E1]
gi|228595287|gb|EEK53028.1| Phage terminase large subunit [Bacillus cereus BGSC 6E1]
Length = 375
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 11/247 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ +FDE + R + V P +L
Sbjct: 69 EASQDLIQGITLAGCFFDEVVLMVRSFVNQATGRCSVEGSKVWFNCNPGGPYHWFKTEWL 128
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + IR T+++ +E+ ++R Y + G SG IF + +ED
Sbjct: 129 DKAREKNLLHIRFTMDDNLSLSEKVKQRYYKMYSGVFFKRYILGLWAAASGLIFDMFDED 188
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV--WNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ D+G + G + +V Y VK YR +
Sbjct: 189 KHKVPTIEREYVEYFVSCDYGTQNAMVYGLWGKCIEKGEEVWYKVKEYRYSGRETEKQKT 248
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ + + + D ++ ++ N V+ GI ++
Sbjct: 249 DQEYYEDFEKFV--GDLPIRGTVVDPSAASFIAL----LVRNKRKVYKARNNVKEGIGNV 302
Query: 240 LDRMRSG 246
+ +G
Sbjct: 303 GVALNTG 309
>gi|66395816|ref|YP_240151.1| ORF009 [Staphylococcus phage EW]
gi|62636238|gb|AAX91349.1| ORF009 [Staphylococcus phage EW]
Length = 421
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDEGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S+ D V T + P +Q + +E R +
Sbjct: 173 PKRKQSWVNKKYESSFQPDNTFVHHSTYLDNPFIAKQFIDEAEAAKERNELRYRWEYLGE 232
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I ++ + I +DFG+ P A +++ VIY V
Sbjct: 233 AIGSGVVPFNNLQIEKIPDELFRSFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAVDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Y + + L S G + D + D + + + G+K
Sbjct: 293 YYGVQISNRQFGKWLWSKG------YQSDDIYADSAEPKSIDELRKEHGIK---RIKGVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 344 KGPDSVEYGEQWLNDL 359
>gi|258440753|ref|ZP_05690695.1| phage terminase [Staphylococcus aureus A8115]
gi|282894690|ref|ZP_06302917.1| phage terminase large subunit [Staphylococcus aureus A8117]
gi|257852494|gb|EEV76414.1| phage terminase [Staphylococcus aureus A8115]
gi|282762967|gb|EFC03100.1| phage terminase large subunit [Staphylococcus aureus A8117]
Length = 431
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/259 (15%), Positives = 84/259 (32%), Gaps = 28/259 (10%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPEDVYF------EGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + + E + + +T+
Sbjct: 107 FRGLD-DPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITV 165
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + + + T ++ + +R D Y + R AR
Sbjct: 166 TFNPWSERHWLKPTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIV 225
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVI 161
G+ + G +F + + + GMDFG+ P V + + I
Sbjct: 226 CDGDWGVAEGLVFNNFKVEDFDWFAEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKI 285
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
++ Y + L G G G+++ ++ + +G+K +
Sbjct: 286 FIYDEYYKKAMLTDDIKQMLIKKGLDDVDIAADYG-----AGGDRVISELKSKGIKGIR- 339
Query: 222 CATFDDGSNGVEAGISDML 240
G+N + GI +
Sbjct: 340 --KALKGANTILPGIQFIQ 356
>gi|325912773|ref|ZP_08175152.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
UPII 60-B]
gi|325477904|gb|EGC81037.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
UPII 60-B]
Length = 409
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 92/258 (35%), Gaps = 21/258 (8%)
Query: 2 KAY---EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSP 56
KAY E+GRD + T + +E V+ E R +A + + P
Sbjct: 108 KAYTGSERGRDSIRGMTAWGAYINEASLAKASVFSEIQKRCSAPEARIICDTNPDAPTHW 167
Query: 57 IIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGR 113
+ ++Y+ + + T ++ P ++ ++++ S P + G G G
Sbjct: 168 LKKNYIDNTDPKAGIKTFFFTFDDNPTLDDDYKEKLKASTPSGVFYDRDILGLWCTGEGV 227
Query: 114 IFPIVEE-DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
++ ++ + I+ +P G+D+G+ H + + Y+++ + + +
Sbjct: 228 VYRDFDQSTMTIDRDKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNT-YLIEEHAHKHR 286
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ V + P D + L+ G++ + +
Sbjct: 287 FIDYWVDLAHDVQQKYGSTIP---FWCDSARPDNLNEFLT-HGIRAYN-------ANKAI 335
Query: 233 EAGISDMLDRMRSGRWKV 250
+GI + M++ + V
Sbjct: 336 NSGIEAVGSLMKAKHFFV 353
>gi|116512790|ref|YP_811697.1| Phage terminase large subunit [Lactococcus lactis subsp. cremoris
SK11]
gi|116108444|gb|ABJ73584.1| Phage terminase large subunit [Lactococcus lactis subsp. cremoris
SK11]
Length = 411
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 33/248 (13%), Positives = 85/248 (34%), Gaps = 16/248 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + T + + +E ++V+ E ++R + + P + + Y+
Sbjct: 115 GVGAIRGMTAYGAYINEASLAKQEVFAEIVSRCSGNGARILADTNPDNPEHWLKKEYIDK 174
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVE-EDI 122
+ + + +++ +E+ R+ I + P + KG + G ++ +
Sbjct: 175 PNENVKAFHFELDDNTFLSERYRENIKAATPSGMFYDRDIKGLWVSADGVVYQDFDSNKH 234
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I S D+P+ G+D+G+ H + + D Y+++ + + + + V K
Sbjct: 235 YIQSKDLPKLSTFYCGVDWGYEHWGSIVVIGET-DDGTAYLIEEHAKQHEEIDYWVDIAK 293
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ P D E + + E + G+ + R
Sbjct: 294 EIQERYGSRVP---FYCDSARPEHVD--------RFKREHIEAFNADKARLTGVEAVARR 342
Query: 243 MRSGRWKV 250
+ + +
Sbjct: 343 FKKDKLFI 350
>gi|229125411|ref|ZP_04254482.1| Phage terminase large subunit [Bacillus cereus 95/8201]
gi|228658044|gb|EEL13813.1| Phage terminase large subunit [Bacillus cereus 95/8201]
Length = 376
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 77/248 (31%), Gaps = 12/248 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T ++FDE + + R++ T + P E +L
Sbjct: 69 ESSQDLIQGITAAGMFFDEVALMVQSFVNQATGRLSVTGSKMWFNCNPAGPYHWFKEKWL 128
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + ++++ +E+ ++R Y KGE SG IF + +E+
Sbjct: 129 DQKKEKNLLHLKFSMDDNLSLDEKTKRRYHRMYSGVFYRRYIKGEWAAASGLIFDMFDEN 188
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVW---NRDSDVIYVVKNYRCREQTPIFHV 178
I + D+G + A G D +V Y +K Y +
Sbjct: 189 IHKVESVDRNYVEYYVSCDYGTQNAMAYGLWGKCIEEGDKEVWYKIKEYHYSGRDTEKQK 248
Query: 179 AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+ D ++ ++ N V+ GI +
Sbjct: 249 T--DQEYYEDYEEFVGDLPIRGTVVDPSAASFIAL----LVRNKRKVYKARNNVKEGIGN 302
Query: 239 MLDRMRSG 246
+ + +G
Sbjct: 303 VGVALNTG 310
>gi|125623674|ref|YP_001032157.1| terminase large subunit [Lactococcus lactis subsp. cremoris MG1363]
gi|124492482|emb|CAL97424.1| terminase large subunit [Lactococcus lactis subsp. cremoris MG1363]
gi|300070440|gb|ADJ59840.1| terminase large subunit [Lactococcus lactis subsp. cremoris NZ9000]
Length = 411
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/248 (13%), Positives = 86/248 (34%), Gaps = 16/248 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + T + + +E ++V+ E ++R + + P + + Y+
Sbjct: 115 GVGAIRGMTAYGAYVNEASLAKQEVFAEIVSRCSGNGARILADTNPDNPEHWLKKEYIDK 174
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVE-EDI 122
+ + + +++ +++ R+ I + P + KG + G ++ +
Sbjct: 175 PNENVKAFHFELDDNTFLSKRYRENIKAATPSGMFYDRDIKGLWVSADGVVYQDFDSNKH 234
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I S D+P+ G+D+G+ H + + D Y+++ + + + + V K
Sbjct: 235 YIQSKDLPKLSTFYCGVDWGYEHWGSIVVIGET-DDGTAYLIEEHAKQHEEIDYWVDIAK 293
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ P D E + + E +G G+ + R
Sbjct: 294 EIQERYGSRVP---FYCDSARPEHVD--------RFKREHIEAFNGDKARLTGVEAVARR 342
Query: 243 MRSGRWKV 250
+ + +
Sbjct: 343 FKKDKLFI 350
>gi|118445162|ref|YP_879274.1| PBSX family phage terminase large subunit [Clostridium novyi NT]
gi|118135618|gb|ABK62662.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT]
Length = 434
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/278 (12%), Positives = 80/278 (28%), Gaps = 48/278 (17%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPED--VYFEG--LTRINATQGLVTLTLTPLKGRS 55
K + +K +S + + + +E + + R + L P+ +
Sbjct: 109 FKGLD-DSEKIKSISDISDIVIEEATELTLLDFTQLNLRMRTKQKNQQIHLMFNPVNKVN 167
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGR 113
+ + + +++ T P+ + K I + + +GE R
Sbjct: 168 WVYKTFFEQKYDGALIVKTTYKNNPYLPKDYVKEIKQLKETNYTLYKIYAEGEFSSLDKR 227
Query: 114 IFPIV---EEDIVINSLDIPEH--------------------------WVQIGGMDFGWH 144
IF + DI+ + ++ G+DFG+
Sbjct: 228 IFTNWQPLDFDILDIKYEKVKNKLKEMGIDDNILKYVSSPIFQKLLKERECYFGLDFGYT 287
Query: 145 -HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS 203
P A + ++ + I+V + T +K G D
Sbjct: 288 NDPSAFIAFMVDKKTKEIWVFDEFYLSGLTNEDIFKEIKYKGYSKEII------TADSSE 341
Query: 204 GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + + +R G+ G + + GI +
Sbjct: 342 PKSI-EELKRLGL---TRIKAAKKGKDSILNGIQYLQS 375
>gi|293572610|ref|ZP_06683581.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E980]
gi|291607307|gb|EFF36658.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E980]
Length = 414
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 90/248 (36%), Gaps = 16/248 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + T + + +E ++V+ E ++R + T + P + + Y+
Sbjct: 116 GVGAIRGMTAYGAYINEASLARQEVFAEIVSRCSGTGARILADTNPDNPEHWLKKEYIDN 175
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVE-EDI 122
SS + Q +++ +E+ R I +S P + KG + G ++ +
Sbjct: 176 SSKNIQSFHFELDDNTFLSERYRNNIKESTPSGMFYDRDIKGLWVSAEGVVYRDFDASKH 235
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I S D+P G+D+G+ H + + D Y+++ + + + + V K
Sbjct: 236 YIQSKDLPPLSNFYCGVDWGYEHWGSIVVIGET-DDGTAYLIEEHATQFEEIDYWVDVAK 294
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ P D E ++ + + E + +G+ ++ R
Sbjct: 295 GIQERYGLRVP---FYCDSARPEHVA--------RFVREKINAKNAHKARLSGVEEVAKR 343
Query: 243 MRSGRWKV 250
+ + +
Sbjct: 344 FKQDKLFI 351
>gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
Length = 402
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 15/247 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFE-----GLTRINATQGLVTLTLTPLKGRSPIIEHY 61
+ + V DE + + + +G TP +S
Sbjct: 105 NIETARGKKYSLVVLDELDSMRAFEKQWREIIRATLADYRGRALFMGTPKGYKSLYRLEK 164
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
LS ++++ +V T + P + +E + + + E G I+ D
Sbjct: 165 LSKTNANYEVFHFTSFDNPFLSVEELDEMRGEMTVTQYAQEMLAEYHKMEGLIYEEFNRD 224
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
I +L +DFG++HPFAAG D+ +++ + R+ + + A+
Sbjct: 225 QHIKALPFTPE-RWALSIDFGYNHPFAAGIFAIGSDN-SLHLDRMVYKRKLSDEQRMNAV 282
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ D D + R+ G+K+ P G+ V GI+
Sbjct: 283 RDLIGDTKL----DFQIGDSEDPLAIDTLNRQLGLKIQP----VVKGAGSVLEGINKSKS 334
Query: 242 RMRSGRW 248
+ GR
Sbjct: 335 LLHQGRL 341
>gi|19746248|ref|NP_607384.1| putative terminase, large subunit [Streptococcus pyogenes MGAS8232]
gi|19748434|gb|AAL97883.1| putative terminase, large subunit [Streptococcus pyogenes MGAS8232]
Length = 431
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 30/248 (12%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ WF+E E E + + +T+T P R + + +
Sbjct: 134 WAWFEEAYQIETEDKFSTVVESIRGTSDVPDFFKQITVTFNPWSERHWLKRVFFDEETKR 193
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVI 124
D T ++ +++R D Y + R AR GE + G +F E
Sbjct: 194 ADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFD 253
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I GMDFG+ P + + + +++ + + V ++
Sbjct: 254 VEKTIQRVKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRD 313
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ ++L A+ + +G+ + G + GI M
Sbjct: 314 KNLHRSYIAGDSAE-------KRLIAEIKSKGVSGI---VPSIKGKGSIMQGIQFMQG-- 361
Query: 244 RSGRWKVF 251
+K++
Sbjct: 362 ----FKIY 365
>gi|330507947|ref|YP_004384375.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii
GP-6]
gi|328928755|gb|AEB68557.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii
GP-6]
Length = 422
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 36/276 (13%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
K + ++ + DE PE+ L+R++ + LT P R+ I +++
Sbjct: 104 TSSYKKIEGESLLRAYVDEGTTIPENFTNMLLSRLSDKGACLYLTCNPETPRNYIYRNWI 163
Query: 63 SASSS-DRQVIRMTINETPHYNEQERKRIIDSYPL--HEREARTKGEPILGSGRIFP-IV 118
+ + +V + T+++ P+ + ++ + YP + G + GR+F
Sbjct: 164 ARQDELNIKVWKFTLDDNPYLPLEYKRDLEKEYPKGTVFYDRFILGNWVAAEGRVFGLFA 223
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGH----LVWNRDSDVIYVVKNYR------ 168
G D+G H+ A LV R YV + Y
Sbjct: 224 RGMHCEVPPATLRPKELRIGADYGTHNACAFVALEKYLVPGRAKPTWYVAREYYWDSVVE 283
Query: 169 CREQTPIFHVAALKSWG--------------KWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
++T + + + + + S Q +R
Sbjct: 284 HAQKTDADYSKDMAKFASEQWGYSSGQPGITYGDNTSKMYASTIEVDPSAASFILQLQRD 343
Query: 215 GMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
G+ N V GI + + +G +
Sbjct: 344 GL------HKARAADNDVLGGIRKIASMIGNGDLII 373
>gi|309804260|ref|ZP_07698337.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 11V1-d]
gi|309808639|ref|ZP_07702531.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 01V1-a]
gi|309809485|ref|ZP_07703343.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
SPIN 2503V10-D]
gi|308163663|gb|EFO65933.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 11V1-d]
gi|308168113|gb|EFO70239.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 01V1-a]
gi|308170157|gb|EFO72192.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
SPIN 2503V10-D]
Length = 409
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 21/258 (8%)
Query: 2 KAY---EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSP 56
KAY E+GRD + T + +E V+ E R +A + + P
Sbjct: 108 KAYTGSERGRDSIRGMTAWGAYINEASLAKASVFSEIQKRCSAPEARIICDTNPDAPTHW 167
Query: 57 IIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGR 113
+ ++Y+ + + T ++ P ++ ++++ S P + G G G
Sbjct: 168 LKKNYIDNTDPKAGIKTFFFTFDDNPTLDDDYKEKLKASTPSGVFYDRDILGLWCTGEGV 227
Query: 114 IFPIVEE-DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
++ ++ + I+ +P G+D+G+ H + + Y++K + + +
Sbjct: 228 VYRDFDQSTMTIDRDKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNT-YLIKEHAHKHR 286
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ V + P D + L+ G++ + +
Sbjct: 287 FIDYWVDLAHDVQQKYGSTIP---FWCDSARPDNLNEFLT-HGIRAYN-------ANKAI 335
Query: 233 EAGISDMLDRMRSGRWKV 250
+GI + M++ + V
Sbjct: 336 NSGIEAVGSLMKAKHFFV 353
>gi|229100170|ref|ZP_04231070.1| Phage terminase large subunit [Bacillus cereus Rock3-29]
gi|228683212|gb|EEL37190.1| Phage terminase large subunit [Bacillus cereus Rock3-29]
Length = 414
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/251 (16%), Positives = 82/251 (32%), Gaps = 16/251 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T ++FDE + + R++ T + P E +L
Sbjct: 107 ESSQDLIQGITAAGMFFDEVALMVQSFVNQATGRLSVTGSKMWFNCNPAGPYHWFKEKWL 166
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + ++++ +E+ ++R Y KGE SG IF + +E
Sbjct: 167 DQKKGKNLLHLKFSMDDNLSLDEKTKRRYHRMYSGVFYRRYIKGEWAAASGLIFDMFDEK 226
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVW---NRDSDVIYVVKNYRCREQTPIFHV 178
++ D+G + A G D +V Y +K Y +
Sbjct: 227 THKVESVDRKYVEYYVSCDYGTQNAMAYGLWGKCIEEGDKEVWYKIKEYHYSGRDTEKQK 286
Query: 179 AALKSWGKWLPWA--WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ + + + P G D + ++ R N V+ GI
Sbjct: 287 TDQEYYEDYEEFVGDLPIKGTVIDPSAASFIAVLMRN--------KRKVYKARNNVKEGI 338
Query: 237 SDMLDRMRSGR 247
++ + +GR
Sbjct: 339 GNVGIALNTGR 349
>gi|227890170|ref|ZP_04007975.1| terminase large subunit [Lactobacillus johnsonii ATCC 33200]
gi|227849265|gb|EEJ59351.1| terminase large subunit [Lactobacillus johnsonii ATCC 33200]
Length = 423
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 23/248 (9%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL---VTLTLTPLKGRSPIIEH 60
+K +S + V +E + Y + R+ + + P+ + +
Sbjct: 119 DPEKIKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMFNPVSKLNWTYQT 178
Query: 61 YLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRI 114
+ S+ + R T + + K I D + + T GE +
Sbjct: 179 WFDPSADYDKSRVSIHRSTYKDNKFLDADNIKTIEDLKRTNPAYYKIYTLGEFATLDKLV 238
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
FP E + + G+D+G+ + P A H+ + +YV+ + R
Sbjct: 239 FPSFETRRLNPRDPELINLHDYFGLDYGFVNDPSAFMHIKLDLKRCKLYVMDEFVKRGLL 298
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
+K G + + + D + ++ RR G+ G + +
Sbjct: 299 NNQLAKVIKDMG------FAKEVITADSAEKKSIAE-MRRDGIY---RIRPALKGPDSIV 348
Query: 234 AGISDMLD 241
GI +
Sbjct: 349 QGIQFLQQ 356
>gi|66394878|ref|YP_239721.1| ORF008 [Staphylococcus phage 85]
gi|148267321|ref|YP_001246264.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus JH9]
gi|150393373|ref|YP_001316048.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus JH1]
gi|189427164|ref|YP_001949840.1| putative terminase, large subunit [Staphylococcus phage phiMR25]
gi|257793419|ref|ZP_05642398.1| phage terminase, large subunit [Staphylococcus aureus A9781]
gi|258418133|ref|ZP_05682398.1| phage terminase [Staphylococcus aureus A9763]
gi|258422108|ref|ZP_05685021.1| phage terminase large subunit [Staphylococcus aureus A9719]
gi|258448907|ref|ZP_05697016.1| phage terminase [Staphylococcus aureus A6224]
gi|258453887|ref|ZP_05701859.1| phage terminase large subunit [Staphylococcus aureus A5937]
gi|282929085|ref|ZP_06336666.1| phage terminase large subunit [Staphylococcus aureus A10102]
gi|295406591|ref|ZP_06816397.1| phage terminase large subunit [Staphylococcus aureus A8819]
gi|297245317|ref|ZP_06929191.1| phage terminase large subunit [Staphylococcus aureus A8796]
gi|62635807|gb|AAX90918.1| ORF008 [Staphylococcus phage 85]
gi|147740390|gb|ABQ48688.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus JH9]
gi|149945825|gb|ABR51761.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus JH1]
gi|189339075|dbj|BAG48139.1| putative terminase, large subunit [Staphylococcus phage phiMR25]
gi|257787391|gb|EEV25731.1| phage terminase, large subunit [Staphylococcus aureus A9781]
gi|257838926|gb|EEV63405.1| phage terminase [Staphylococcus aureus A9763]
gi|257841903|gb|EEV66339.1| phage terminase large subunit [Staphylococcus aureus A9719]
gi|257857803|gb|EEV80695.1| phage terminase [Staphylococcus aureus A6224]
gi|257863752|gb|EEV86508.1| phage terminase large subunit [Staphylococcus aureus A5937]
gi|282589277|gb|EFB94371.1| phage terminase large subunit [Staphylococcus aureus A10102]
gi|285816567|gb|ADC37054.1| Phage terminase, large subunit [Staphylococcus phage phiSaST5K]
gi|294968736|gb|EFG44759.1| phage terminase large subunit [Staphylococcus aureus A8819]
gi|297177988|gb|EFH37237.1| phage terminase large subunit [Staphylococcus aureus A8796]
gi|315128310|gb|EFT84329.1| phage terminase, large subunit, PBSX family protein [Staphylococcus
aureus subsp. aureus CGS03]
Length = 431
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 84/259 (32%), Gaps = 28/259 (10%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPEDVYF------EGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + + E + + +T+
Sbjct: 107 FRGLD-DPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITV 165
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + + + T ++ + +R D Y + R AR
Sbjct: 166 TFNPWSERHWLKPTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIV 225
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVI 161
G+ + G +F + + + GMDFG+ P V + + +
Sbjct: 226 CDGDWGVAEGLVFDNFKVEDFDWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKL 285
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
++ + + L G G G+++ ++ + +G+K +
Sbjct: 286 FIYDEHYKKAMLTDDIKQMLIKKGLGDVDIAADYG-----AGGDRVISELKSKGIKGIR- 339
Query: 222 CATFDDGSNGVEAGISDML 240
G+N + GI +
Sbjct: 340 --KALKGANTILPGIQFIQ 356
>gi|291556861|emb|CBL33978.1| Terminase-like family [Eubacterium siraeum V10Sc8a]
Length = 487
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 92/297 (30%), Gaps = 61/297 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
+++ R +Q +V FDE Y R V + T G
Sbjct: 110 MQHKKDRLNYQGKHYDFVGFDELTQFSFDEYSYMFSRNRPGGKGTRVYIRATANPGGPGH 169
Query: 55 SPIIEHYLSASSS----------------------DRQVIRMTINETPHY--NEQERKRI 90
S + + +++A R I ++ + N+ E
Sbjct: 170 SWVKQRFITAGEPMKPIIEEHKVKKPDGAEIIIRKSRVFIPASVFDNKELLRNDPEYLAS 229
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ P ER+A G+ +G++F +D VI +IP HW + G D
Sbjct: 230 LSMLPTAERKALLYGDWNSFTGQVFTEWRDDPEHYCDRRWTHVIAPFEIPRHWEIVRGFD 289
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCR--------EQTPIFHVAALKSWGKWLP--- 189
FG+ PF+ G + IY ++ Y P ++ + P
Sbjct: 290 FGYTRPFSVGWYAVDTKG-CIYRIREYYGCTDKANEGIRLEPSVIAENIRKIERDDPNIR 348
Query: 190 ---WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
D DK GE ++ R P + G N +G +R+
Sbjct: 349 GRNVYGVADPSIFDKSRGESVADLMARS-----PNFIIWSPGDNARISGKMQYHNRL 400
>gi|119967835|ref|YP_950664.1| putative large terminase subunit [Staphylococcus phage PH15]
gi|112790059|gb|ABI21779.1| putative large terminase subunit [Staphylococcus phage PH15]
Length = 446
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/282 (13%), Positives = 81/282 (28%), Gaps = 53/282 (18%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFEG-------LTRINATQG--LVTLTLTP 50
Q ++ +S +W +E E L + P
Sbjct: 112 AQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNP 171
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D V T + P ++Q + + +E+ R +
Sbjct: 172 PKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGE 231
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFG------------------------- 142
+ P I ++ + + I +DFG
Sbjct: 232 AIGSGVVPFNNLQIEKIPDELYKSFDNIRNAVDFGLTKTAPLHSDVYSKLGEHISGVRKK 291
Query: 143 --WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD 200
P A +++ +IY V + + + LK G + D + D
Sbjct: 292 ACATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKRRG------YQSDEIYAD 345
Query: 201 KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ ++ + G+K G + VE G + D
Sbjct: 346 SAEPKSIAELKQEHGIK---RIKGVKKGPDSVEHGEQWLDDL 384
>gi|323340036|ref|ZP_08080302.1| prophage protein [Lactobacillus ruminis ATCC 25644]
gi|323092542|gb|EFZ35148.1| prophage protein [Lactobacillus ruminis ATCC 25644]
Length = 421
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/250 (13%), Positives = 78/250 (31%), Gaps = 22/250 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPE--DVYFEGLTRINATQGL---VTLTLTPLKGR 54
K + +K +S + V +E D Y + R+ + + P+
Sbjct: 113 FKGMD-DPEKIKSIKGLSDVVMEEASEFTLDDYTQLTLRLREPKHRQRQLFCMFNPVSKV 171
Query: 55 SPIIEHYLSASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ + + + + V T + + I + + +
Sbjct: 172 NWTYKQWFAPDAEYDPSRVAVHHSTYKDNRFLDADNIATIENLKITNPAYYKIYTLGEFA 231
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC 169
+ + D + + G+DFG+ P H+ + S V+YV++ Y
Sbjct: 232 TLDKLVFPTFEKRRLRADSLNKFPSLFGLDFGYTNDPSVFIHVKADVKSKVLYVLEEYVK 291
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+ A+KS G + + + D + ++ R + + G
Sbjct: 292 KGMLNDEIAQAIKSLG------YAKEKITADAAEKKSIAEIKR----NGIYRIRPAEKGP 341
Query: 230 NGVEAGISDM 239
N V G++ +
Sbjct: 342 NSVVQGVNFL 351
>gi|167749269|ref|ZP_02421396.1| hypothetical protein EUBSIR_00220 [Eubacterium siraeum DSM 15702]
gi|167657762|gb|EDS01892.1| hypothetical protein EUBSIR_00220 [Eubacterium siraeum DSM 15702]
Length = 487
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 92/297 (30%), Gaps = 61/297 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
+++ R +Q +V FDE Y R V + T G
Sbjct: 110 MQHKKDRLNYQGKHYDFVGFDELTQFSFDEYSYMFSRNRPGGKGTRVYIRATANPGGPGH 169
Query: 55 SPIIEHYLSASSS----------------------DRQVIRMTINETPHY--NEQERKRI 90
S + + +++A R I ++ + N+ E
Sbjct: 170 SWVKQRFITAGEPMKPIIEEHKVKKPDGAEIIIRKSRVFIPASVFDNKELLRNDPEYLAS 229
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ P ER+A G+ +G++F +D VI +IP HW + G D
Sbjct: 230 LSMLPTAERKALLYGDWNSFTGQVFTEWRDDPEHYCDRRWTHVIAPFEIPRHWEIVRGFD 289
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCR--------EQTPIFHVAALKSWGKWLP--- 189
FG+ PF+ G + IY ++ Y P ++ + P
Sbjct: 290 FGYTRPFSVGWYAVDTKG-CIYRIREYYGCTDKANEGIRLEPSVIAENIRKIERDDPNIR 348
Query: 190 ---WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
D DK GE ++ R P + G N +G +R+
Sbjct: 349 GRNVYGVADPSIFDKSRGESVADLMARS-----PNFIIWSPGDNARISGKMQYHNRL 400
>gi|227498429|ref|ZP_03928575.1| phage terminase large subunit [Acidaminococcus sp. D21]
gi|226903887|gb|EEH89805.1| phage terminase large subunit [Acidaminococcus sp. D21]
Length = 418
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 24/236 (10%)
Query: 18 YVWFDEEPPEDVYF------EGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
VW +E + L R Q V T P K RS + + DR V
Sbjct: 130 IVWLEELDQFSGMEEIRNLCQSLLR-GGPQYWVFCTYNPPKSRSSWVNEEILVDDPDRMV 188
Query: 72 IRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSL 127
R T + P EQ + +E GE + G+G ED+ +
Sbjct: 189 HRSTYLQVPQKWLGEQFLQEAEKLKERNEMAYRHEYLGE-VTGTGGAVFENVEDLPLTEE 247
Query: 128 DIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ + ++ G+DFG+ P A + ++ + +Y+ ++ T +
Sbjct: 248 ALGQFDHRLFGLDFGFAVDPLAFVAMHYDAKHEDLYIWGEIYEQKLTNPQAARKISQ--- 304
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
P + ++ D + + R M ++ G + VE GI +
Sbjct: 305 ---VILPGELVRCDSAEPKSIKE-MRSLDMNIIGA----PKGPDSVEYGIKWLQSL 352
>gi|322412526|gb|EFY03434.1| terminase large subunit [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 435
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 73/237 (30%), Gaps = 24/237 (10%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ WF+E E E + +T+T P R + + +
Sbjct: 138 WAWFEEAYQIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKR 197
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVI 124
D T ++ +++R D Y + R AR GE + G +F E
Sbjct: 198 ADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFD 257
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I GMDFG+ P + + + +++ + + V ++
Sbjct: 258 VEKTIQRIKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRD 317
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ ++L A+ + +G+ + G + GI M
Sbjct: 318 KNLHRSYIAGDSAE-------KRLIAEIKSKGVSGI---VPSIKGKGSIMQGIQFMQ 364
>gi|303233959|ref|ZP_07320608.1| phage terminase, large subunit, PBSX family [Finegoldia magna
BVS033A4]
gi|302494884|gb|EFL54641.1| phage terminase, large subunit, PBSX family [Finegoldia magna
BVS033A4]
Length = 406
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/244 (12%), Positives = 80/244 (32%), Gaps = 17/244 (6%)
Query: 11 WQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ T + +E ++V+ E ++R + V + P +++ Y+ +
Sbjct: 121 IRGMTSFGAYINEASLARKEVFAEIISRCSGDGARVLVDTNPDNPEHWLLKDYILNPDDN 180
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEE-DIVINS 126
+ +++ +++ K I S P E G+ + G G ++ ++
Sbjct: 181 ILEHKFRLDDNTFLSDRYIKNIKASTPSGMFYERDIDGDWVSGDGVVYADFDKNKHYFEP 240
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ G+D+G+ H A + D Y+++ Y + + K
Sbjct: 241 KTEKTYQCTFCGVDWGYEHYGAIVVIGKGYDG-KYYMLEEYAETLKEIDYWENIAK---- 295
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSG 246
+ + D E + + + + S AGI + + ++
Sbjct: 296 DIYKRYGDIPFYCDTARPEYI--------YRFINCGLDAKNASKERMAGIEFVAKQFKTD 347
Query: 247 RWKV 250
+
Sbjct: 348 NLYI 351
>gi|228930635|ref|ZP_04093616.1| Phage terminase large subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228829031|gb|EEM74687.1| Phage terminase large subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 381
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 11/247 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T ++FDE + + R++ T + P E +L
Sbjct: 75 ESSQDLIQGITAAGMFFDEVALMVQSFVNQATGRLSVTGSKMWFNCNPAGPYHWFKEKWL 134
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + ++++ +E+ ++R Y KGE SG IF + +E+
Sbjct: 135 DQKKEKNLLHLKFSMDDNLSLDEKTKRRYHRMYSGVFYRRYIKGEWAAASGLIFDMFDEN 194
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV--WNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ D+G + G + +V Y VK YR +
Sbjct: 195 KHKVPTIQREYVEYFVSCDYGTQNAMVYGLWGKCIEKGEEVWYKVKEYRYSGRETEKQKT 254
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ D S+ ++ N V+ GI ++
Sbjct: 255 --DQEYYEDFEGFVGDLPIRGTVVDPSASSFIAL----LVRNKRKVYKARNNVKEGIGNV 308
Query: 240 LDRMRSG 246
+ +G
Sbjct: 309 GVALNTG 315
>gi|152990214|ref|YP_001355936.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2]
gi|151422075|dbj|BAF69579.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2]
Length = 398
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 17/237 (7%)
Query: 6 QGRDKWQSNTVHYVWFDEEPP--EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
Q + V W +E E+ + + I + ++ P P + ++
Sbjct: 107 QSIKSTEG--VDICWVEEAQTVSEESWQILIPTIRKPGSEIWVSFNPYFVEDPTYQRFVV 164
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
S+ V ++T + P++ + R+ + E + + +
Sbjct: 165 NPPSNAFVKKVTYKDNPYFPDVLREEMEYDKKTDYERYMHVWEGECITYSDAQVFRDKFA 224
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I+++D+ G D+G+ P + + +Y+ + T +
Sbjct: 225 IDTIDVGNSKEVYYGADWGFAVDPTTLVRVWV--VGEYLYIDQEAYKVGCTLDDTPSL-- 280
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ + S + +G + P VE GI M
Sbjct: 281 ----FDKIVGSRSHIIRADSSRPETINFLNSRGFTIKPA----PKWPGSVEDGIEFM 329
>gi|125974959|ref|YP_001038869.1| PBSX family phage terminase large subunit [Clostridium thermocellum
ATCC 27405]
gi|125715184|gb|ABN53676.1| phage terminase, large subunit, PBSX family [Clostridium
thermocellum ATCC 27405]
Length = 418
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 75/239 (31%), Gaps = 24/239 (10%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
V ++W++E + + L R Q +V T P + + + D
Sbjct: 131 YVKFIWYEEVDEFLGMEEIRIINQSLMR-GGEQFVVFYTYNPPNRVNAWVNEEILIDRPD 189
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
R+V T P EQ ++E GE + G+G + I
Sbjct: 190 RKVHHSTYLTVPRDWLGEQFFIEAEHLKKVNEKAYRHEYLGE-VTGTGGEVFTNVKARKI 248
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
N +I G+DFG+ P A +++ +Y+ + +K
Sbjct: 249 NDEEIKAFDRIKRGLDFGYAVDPAAYIVCHFDKTRRRLYIFHEIFQVGLSNRKLAELIKK 308
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
K D + ++ R G+ + G + VE GI + D
Sbjct: 309 ENKSNKLV------VADSAEPKSIAE-LRGYGINIRGA----KKGPDSVEYGIKFLQDL 356
>gi|163932181|ref|YP_001642371.1| putative phage terminase large subunit B [Lactobacillus johnsonii
prophage Lj771]
gi|163562135|gb|ABY26991.1| putative phage terminase large subunit B [Lactobacillus johnsonii
prophage Lj771]
Length = 409
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 89/251 (35%), Gaps = 18/251 (7%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+G + T + + +E +V+ E + R + + P + Y+
Sbjct: 115 RGIGAIRGMTSYGAYINEASLATHEVFQEIVQRCSVGSARIICDTNPDIPTHWLKTDYID 174
Query: 64 ASSSDRQV--IRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFP-IVE 119
++ TI++ + + + + P R G+ + G G ++
Sbjct: 175 NHDPKARIKAFSFTIDDNTFLAKDYVEALKAATPRGMFYDRSILGQWVTGEGIVYQDFNA 234
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+VI+ +IP+ G+D+G+ HP L + + YV+K++ R + + V
Sbjct: 235 NTMVIDDKNIPDGLNYYCGVDWGFEHPNPILLLGDDNQGNT-YVIKDFTKRHKFISYWVD 293
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K D + L+ ++ G+ + + GI +
Sbjct: 294 IAKRLQTEYGRNL---IFYVDSARPDNLNE-FQSNGINAINANKN-------ILPGIEFV 342
Query: 240 LDRMRSGRWKV 250
+MR G++ +
Sbjct: 343 AQKMRQGKFFI 353
>gi|257453067|ref|ZP_05618366.1| PBSX family phage terminase large subunit [Fusobacterium sp.
3_1_5R]
gi|317059604|ref|ZP_07924089.1| phage terminase [Fusobacterium sp. 3_1_5R]
gi|313685280|gb|EFS22115.1| phage terminase [Fusobacterium sp. 3_1_5R]
Length = 416
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 35/269 (13%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQG--LVTLT 47
+ ++ K S +V + W +E E ++ E + + V +
Sbjct: 109 FRGFD-DPMKITSISVTTGSLCWCWVEEAYEITDEAAFNMLDESIRGVVEEPLFKQVIIC 167
Query: 48 LTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KG 105
P R + + + + I ++ ++K D + R + G
Sbjct: 168 FNPWNERHWLKKRFFDVQDENILAITTNYMCNEWLDDSDKKLFEDMKKNNPRRYQVAGLG 227
Query: 106 EPILGSGRIFPIVEEDIVINSL--DIPEHWVQIGGMDFGWHHPFAAGHLVW-NRDSDVIY 162
+ G ++ E + + + G+DFG+ + AA + + +Y
Sbjct: 228 NWGIVDGLVYENWHEQEFDWREILEKRKKAKAVFGLDFGFTNDPAAFFCAVLDLEQKELY 287
Query: 163 VVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPEC 222
V + ++ G D + + R G+ P
Sbjct: 288 VFDEFYKTHMHNSDIYREIERMGFRKEII------IADGVEAKSI-EHLRNLGL---PRV 337
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G + + AGI + D +K++
Sbjct: 338 KGSKKGRDSINAGIQFVQD------FKIY 360
>gi|257455568|ref|ZP_05620798.1| phage terminase, large subunit, pbsx family [Enhydrobacter
aerosaccus SK60]
gi|257447034|gb|EEV22047.1| phage terminase, large subunit, pbsx family [Enhydrobacter
aerosaccus SK60]
Length = 428
Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 74/254 (29%), Gaps = 25/254 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFE-GLTRI--NATQGLVTLTLTPLKGRSPIIEHYLS 63
++ T+ W +E + L +V ++L P + + Y++
Sbjct: 111 SIKSFEGATIT--WIEEAQTVSAFSLGILIPTVIRTPNPMVIMSLNPRLPQDAVYAQYIA 168
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEP-ILGSGRIFPIVEE 120
D V+++ + PH + + E G P + G I+ E
Sbjct: 169 VERDDTAVVQVNYTDNPHCPPELIRLAEQMRDEDFDNYEHIYLGRPKEIADGAIYKAEFE 228
Query: 121 DI----VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
I I ++ + D G P A + V+ Y +
Sbjct: 229 AIRKSNRICNVPHDPNLPVYTSWDLGILDPTAIWFFQI--YGKEVRVIDYYEANNEPLAH 286
Query: 177 HVAALKSWGKWLPWAW-----PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+ L + L + + PHD D SG G +M G
Sbjct: 287 YARILDEKREALGYRYEKHFAPHDIAARDLSSGVSREQTMANLGYRM------TKGARLG 340
Query: 232 VEAGISDMLDRMRS 245
VE I +++
Sbjct: 341 VEDRIEATRQMLKN 354
>gi|94988455|ref|YP_596556.1| terminase large subunit [Streptococcus phage 9429.2]
gi|94541963|gb|ABF32012.1| terminase large subunit [Streptococcus phage 9429.2]
Length = 431
Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 77/248 (31%), Gaps = 30/248 (12%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ WF+E E E + +T+T P R + + +
Sbjct: 134 WAWFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKR 193
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVI 124
D T ++ +++R D Y + R AR GE + G +F E
Sbjct: 194 ADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFD 253
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I GMDFG+ P + + + +++ + + V ++
Sbjct: 254 VEKTIQRVKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRD 313
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ ++L A+ + +G+ + G + GI M
Sbjct: 314 KNLHRSYIAGDSAE-------KRLIAEIKSKGVSGI---VPSIKGKGSIMQGIQFMQG-- 361
Query: 244 RSGRWKVF 251
+K++
Sbjct: 362 ----FKIY 365
>gi|15674984|ref|NP_269158.1| putative terminase, large subunit [Streptococcus phage 370.3]
gi|13622131|gb|AAK33879.1| putative terminase, large subunit - phage associated [Streptococcus
phage 370.3]
Length = 429
Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 77/248 (31%), Gaps = 30/248 (12%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ WF+E E E + +T+T P R + + +
Sbjct: 132 WAWFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKR 191
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVI 124
D T ++ +++R D Y + R AR GE + G +F E
Sbjct: 192 ADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFD 251
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I GMDFG+ P + + + +++ + + V ++
Sbjct: 252 VEKTIQRVKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRD 311
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ ++L A+ + +G+ + G + GI M
Sbjct: 312 KNLHRSYIAGDSAE-------KRLIAEIKSKGVSGI---VPSIKGKGSIMQGIQFMQG-- 359
Query: 244 RSGRWKVF 251
+K++
Sbjct: 360 ----FKIY 363
>gi|291529974|emb|CBK95559.1| Terminase-like family [Eubacterium siraeum 70/3]
Length = 487
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 92/297 (30%), Gaps = 61/297 (20%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR--- 54
+++ R +Q +V FDE Y R V + T G
Sbjct: 110 MQHKKDRLNYQGKHYDFVGFDELTQFSFDEYSYMFSRNRPGGKGTRVYIRATANPGGPGH 169
Query: 55 SPIIEHYLSASSS----------------------DRQVIRMTINETPHY--NEQERKRI 90
S + + +++A R I ++ + N+ E
Sbjct: 170 SWVKQRFITAGEPMKPIIEEHKVKKPDGAEIIIRKSRVFIPASVFDNKELLRNDPEYLAS 229
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMD 140
+ P ER+A G+ +G++F +D VI +IP HW + G D
Sbjct: 230 LSMLPTAERKALLYGDWNSFTGQVFTEWRDDPEHYCDRRWTHVIAPFEIPRHWEIVRGFD 289
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCR--------EQTPIFHVAALKSWGKWLP--- 189
FG+ PF+ G + IY ++ Y P ++ + P
Sbjct: 290 FGYTRPFSVGWYAVDTKG-CIYRIREYYGCTDKANEGIRLEPSAIAENIRKIERDDPNIR 348
Query: 190 ---WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
D DK GE ++ R P + G N +G +R+
Sbjct: 349 GRNVYGVADPSIFDKSRGESVADLMARS-----PYFIIWSPGDNARISGKMQYHNRL 400
>gi|168185987|ref|ZP_02620622.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
C str. Eklund]
gi|169296078|gb|EDS78211.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
C str. Eklund]
Length = 412
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/237 (10%), Positives = 65/237 (27%), Gaps = 26/237 (10%)
Query: 19 VWFDEEPPED--VYFEGLTRIN---ATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVI- 72
+W +E + + R+ +TL+ P+ + Y + ++Q +
Sbjct: 130 IWVEEATETEYKAVKQLDKRLRGRSDVTKRLTLSFNPILKDHWLYNEYFNIWEDNKQYVE 189
Query: 73 -------RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + + + + + + E T G + IF + +
Sbjct: 190 KNNVSILKTTYKDNKFLTDDDIAALENETDPYYYEVYTLGNWGVLGAVIFKNWKVQDFSD 249
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+++ F PFA ++ +Y+ +K
Sbjct: 250 IEKTFDNYRHGVDWGFA-DDPFAYIKSHLDKTRKRLYICDEIEVVGMLNEESAPLVKEKA 308
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D + ++ K+ + G +E GI +
Sbjct: 309 G-------SSRVICDSAEPKSVAEFK-----KLRVNAKSAKKGPGSIEYGIKFLQGL 353
>gi|291548652|emb|CBL24914.1| phage terminase, large subunit, PBSX family [Ruminococcus torques
L2-14]
Length = 445
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 78/238 (32%), Gaps = 24/238 (10%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQGLVT----LTLTPLKGRSPIIEHYLSASSS 67
++W +E E ++ E + + LTL P I + + +
Sbjct: 157 WMWIEEAYEISSEDDFNMLDESIRGAVPDGSGLFKQITLTLNPWNEHHWIKKRFFDNTDD 216
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEED-IVI 124
+ + ++ + K + R + G+ + G ++ EE +
Sbjct: 217 ETLAMTTNYKCNEWLDKADLKVFETMKKQNPRRYKVAGLGDWGIVDGLVYENWEEKAFSV 276
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ + + G+DFG+ P A + ++ S I+V + ++
Sbjct: 277 DEVKKIAGVKSVFGLDFGYTNDPSALFCGLIDQSSKTIWVFDEMYQPGMSNEAIAEQVQR 336
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G + + + D + + + R G+K + G + + GI + D
Sbjct: 337 MG------YVKEKITADSAEPKSI-DRLRELGLKGIR---KARKGKDSINNGIDFIQD 384
>gi|82751447|ref|YP_417188.1| phage-associated terminase large subunit [Staphylococcus aureus
RF122]
gi|215401206|ref|YP_002332511.1| putative terminase large subunit [Staphylococcus phage
phiSauS-IPLA88]
gi|82656978|emb|CAI81415.1| phage-associated terminase large subunit [Staphylococcus aureus
RF122]
gi|215260433|gb|ACJ64564.1| gp36 [Staphylococcus phage phiSauS-IPLA88]
Length = 429
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 40/270 (14%), Positives = 85/270 (31%), Gaps = 36/270 (13%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPEDVYF------EGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + + E + + +T+
Sbjct: 107 FRGLD-DPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITV 165
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + + + T ++ + +R D Y + R AR
Sbjct: 166 TFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIV 225
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVI 161
G+ + G +F + GMDFG+ P + V + + +
Sbjct: 226 CDGDWGVAEGLVFDNFKVTDFDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKEL 285
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
++ + + + +K G ++L + R+G+ P
Sbjct: 286 WIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAE-------KRLITEISRKGV---PN 335
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G+N + G+ + +KV+
Sbjct: 336 IKPSVKGANTIMQGVQFIQG------FKVY 359
>gi|308172469|ref|YP_003919174.1| phage terminase, large subunit, pbsx family [Bacillus
amyloliquefaciens DSM 7]
gi|307605333|emb|CBI41704.1| phage terminase, large subunit, pbsx family [Bacillus
amyloliquefaciens DSM 7]
Length = 424
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 80/262 (30%), Gaps = 30/262 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPEDVYFE------GLTRINATQGLVTLTL- 48
+ + K +S + ++W +E + E + R GL
Sbjct: 110 FRGAD-DPAKIKSLKIAKFPVAFLWVEELAEFKLEEEISMIENSVLRAELPDGLFYAFYY 168
Query: 49 ---TPLKGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
P + +S + + Y S+ + + T E P+ ++ ++ + + R +
Sbjct: 169 SYNPPKRKQSWVNKKYESSFVPKNTYIHHSTYLENPYISKAFKEEAEIVKERNPLKYRWE 228
Query: 105 GEPILGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
+ P I I + G+DFG+ P A +++ +
Sbjct: 229 YLGEALGSGVVPFDNLKIENGCITDEMVRSFDNIRQGVDFGYGPDPLAYVRWHYDKKRNS 288
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IY + ++ + ++S G D + + G++
Sbjct: 289 IYAIDELYDQKVSNRELAKWIRSKGYESQEI------TADSAEPKSIDELKIDHGIR--- 339
Query: 221 ECATFDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 340 RITGAKKGPDSVQYGEEWLDDL 361
>gi|313113988|ref|ZP_07799543.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623690|gb|EFQ07090.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 486
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 50/306 (16%), Positives = 91/306 (29%), Gaps = 64/306 (20%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQGLVTLTLTPLKGR---SPI 57
Q + +Q ++ DE Y R V + T G +
Sbjct: 112 TQDKYNYQGKAFDFIGVDELTHFTWEEYSYLMSRNRPTGPGTAVYMRATANPGGIGHGWV 171
Query: 58 IEHYLSASSSDRQ----------------------VIRMTINETPHYNEQE--RKRIIDS 93
+++ + + I T+ + E + + S
Sbjct: 172 KARFITPAPPGTRMVQLVDVKKPDGSVEKLRRTRVFIPSTVFDNKKLLENDPGYLGTLAS 231
Query: 94 YPLHEREARTKGEPILGSGRIFPIVEED----------IVINSLDIPEHWVQIGGMDFGW 143
P E++A G+ +G++F D VI IP HW G DFG+
Sbjct: 232 LPEAEKQALLYGDWDSFNGQVFTEWRNDPAHYEDQRWTHVIKPFRIPAHWRIWRGYDFGY 291
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH-------VAALKSWGKWLP------W 190
PF+ G + + + + + Y C +K + P
Sbjct: 292 AKPFSVGWYAADEEGRLYRIKELYGCTGVPNEGLKIDPVEQARRIKEAEENDPMLRGRQI 351
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM---RSGR 247
D ++ GE ++A + P + G + AG + R+ GR
Sbjct: 352 TGVADPAIFNESQGESIAAMQEKH-----PNYIFWTPGDHTRLAGKMQLHYRLAFDGEGR 406
Query: 248 --WKVF 251
++VF
Sbjct: 407 PMFQVF 412
>gi|306827214|ref|ZP_07460502.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
gi|304430571|gb|EFM33592.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
Length = 435
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 36/248 (14%), Positives = 77/248 (31%), Gaps = 30/248 (12%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSASSS- 67
+ WF+E E E + +T+T P R + + +
Sbjct: 138 WAWFEEAYQIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKR 197
Query: 68 -DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVI 124
D T ++ +++R D Y + R AR G+ + G +F E
Sbjct: 198 ADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGDWGVAEGLVFDNFEVVDFD 257
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I GMDFG+ P + + + +++ + + V ++
Sbjct: 258 VEKTIQRVKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRD 317
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ ++L A+ + +G+ + G + G+ M
Sbjct: 318 KNLHRSYIAGDSAE-------KRLIAEIKSKGVSGIVASL---KGKGSIMQGVQFMQG-- 365
Query: 244 RSGRWKVF 251
+K++
Sbjct: 366 ----FKIY 369
>gi|226949723|ref|YP_002804814.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
A2 str. Kyoto]
gi|226843947|gb|ACO86613.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
A2 str. Kyoto]
Length = 412
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 26/237 (10%)
Query: 19 VWFDEEPPED--VYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSASSSDRQVI- 72
+W +E + + R+ +TL+ P+ + E Y + D+Q +
Sbjct: 130 IWVEEATETEYKAVKQLDKRLRGRSEVTKRLTLSFNPILKDHWLFEEYFNIWEDDKQYVE 189
Query: 73 -------RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + + + + + + E TKG + IF + +
Sbjct: 190 KNNVSILKTTYKDNKFLTDDDIAALENESDPYYYEVYTKGNWGVLGAVIFKNWKVKDFSD 249
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+++ F PFA +++ +Y+ +K
Sbjct: 250 IEKTFDNYRHGVDWGFA-DDPFAYIKSHYDKTRKRLYICDEIEVVGMLNEESAPLVKEKA 308
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D + ++ K+ + G +E GI +
Sbjct: 309 G-------SSRVTCDSAEPKSVAEYK-----KLRVNAKSAKKGPGSIEYGIKFLQGL 353
>gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
Length = 422
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 14/248 (5%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
++ E D + + ++ DE P++ + L + + + ++ KGR+
Sbjct: 111 FRSTE-NFDALRGEGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRAIIVSTPKGRNWFY 169
Query: 59 EHY---LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ + + + R P+ +E + + P + E + S +F
Sbjct: 170 HVWARGQDPAFPEWESFRFPTLANPYIPPEEVEEARTTLPSDVFRQEYEAEFLEDSAGVF 229
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ + I + + G D H F+ ++ D + +VVK R +
Sbjct: 230 RGIRDCISGQEEEPQPGRRYVVGWDVAKHQDFSVLVVM---DLERAHVVKMDRFNQVD-- 284
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
A K + + + L D G+ L Q RR G++ + +E
Sbjct: 285 --YALQLERVKHICQRYNNARLLMDATGVGDPLLEQVRRMGIQAEGYSLSNTAKQQLIEH 342
Query: 235 GISDMLDR 242
+ R
Sbjct: 343 LAMKIERR 350
>gi|328910568|gb|AEB62164.1| phage terminase, large subunit, pbsx family [Bacillus
amyloliquefaciens LL3]
Length = 373
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 80/262 (30%), Gaps = 30/262 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPEDVYFE------GLTRINATQGLVTLTL- 48
+ + K +S + ++W +E + E + R GL
Sbjct: 59 FRGAD-DPAKIKSLKIAKFPVAFLWVEELAEFKLEEEISMIENSVLRAELPDGLFYAFYY 117
Query: 49 ---TPLKGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
P + +S + + Y S+ + + T E P+ ++ ++ + + R +
Sbjct: 118 SYNPPKRKQSWVNKKYESSFVPKNTYIHHSTYLENPYISKAFKEEAEIVKERNPLKYRWE 177
Query: 105 GEPILGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
+ P I I + G+DFG+ P A +++ +
Sbjct: 178 YLGEALGSGVVPFDNLKIENGCITDEMVRSFDNIRQGVDFGYGPDPLAYVRWHYDKKRNS 237
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IY + ++ + ++S G D + + G++
Sbjct: 238 IYAIDELYDQKVSNRELAKWIRSKGYESQEI------TADSAEPKSIDELKIDHGIR--- 288
Query: 221 ECATFDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 289 RITGAKKGPDSVQYGEEWLDDL 310
>gi|330004400|ref|ZP_08304921.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS
92-3]
gi|328536646|gb|EGF62969.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS
92-3]
Length = 418
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/255 (10%), Positives = 74/255 (29%), Gaps = 14/255 (5%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + +++V DE + D +++ L ++ L + KG S + ++
Sbjct: 110 PDTLRGVALNFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLFMIGQ 169
Query: 66 SSD------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ + + + ++P + E + + SGR++ +
Sbjct: 170 NPEMQAKGLWKSWQFVTADSPFVPDSEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFD 229
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
++ + L G DF + + + + ++ +
Sbjct: 230 RNVHVRPLQFNPRLPIWVGQDFNIDPMSSVI--LQPQPNGEVWAIDEVVLFSSNTSEVCD 287
Query: 180 ALKSW----GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + G GE ++ +G + ++ V A
Sbjct: 288 ELERRYWRQKSQVTVFPDPAGAYRQHARGESDVDIFKEKGFMRVDHPKKHPPIADRVNAV 347
Query: 236 ISDMLDRMRSGRWKV 250
+L R +
Sbjct: 348 NRLLLTASGDVRLYI 362
>gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage
MedDCM-OCT-S04-C890]
Length = 311
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/247 (11%), Positives = 72/247 (29%), Gaps = 18/247 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
D + + DE D ++ E + ++ +G TP + + Y
Sbjct: 61 NSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKGYCVFIGTPAGMNNNFYDLYQH 120
Query: 64 -ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-----GRIFPI 117
+ D + ++T + +E ++ + + + + I G
Sbjct: 121 ANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKKYLQEFECDWIANIEGAIYGEEIAK 180
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+E+ I + D G + + + ++ + R +
Sbjct: 181 IEDKNQIARVPYDPTLPVSTAWDLGVADHSSIIFF--QQKGTGVQIIDYHEERGHGLPHY 238
Query: 178 VAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ L+ + PHD + +G+ + G++ VE GI
Sbjct: 239 IQMLEEKPYIYKDHFAPHDIDVQEFGNGKTRREIAYQLGVRFKVVPKLP------VEEGI 292
Query: 237 SDMLDRM 243
+ +
Sbjct: 293 HAVTMLI 299
>gi|71903662|ref|YP_280465.1| terminase large subunit [Streptococcus pyogenes MGAS6180]
gi|71802757|gb|AAX72110.1| terminase large subunit [Streptococcus pyogenes MGAS6180]
Length = 437
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 36/270 (13%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 119 FRGLD-DELKITSITVDVGLLCWAWFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITV 177
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + + D T ++ +++R D Y + R AR
Sbjct: 178 TFNPWSERHWLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIV 237
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVI 161
GE + G +F E I GMDFG+ P + + + +
Sbjct: 238 CDGEWGVAEGLVFDNFEVVDFDVEKTIQRVKETSAGMDFGFTQDPTTLICVAVDLVNKEL 297
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
++ + + V ++ + ++L A+ + +G+ +
Sbjct: 298 WLYNEHYQKAMLTDHIVKMIRDKNMHKSYIAADSAE-------KRLIAEIKSKGVSGIVA 350
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G + G+ M +K++
Sbjct: 351 SL---KGKGSIMQGVQFMQG------FKIY 371
>gi|281416362|ref|YP_003347496.1| terminase large subunit [Enterococcus phage phiFL1A]
gi|270209192|gb|ACZ63738.1| terminase large subunit [Enterococcus phage phiFL1A]
gi|270209254|gb|ACZ63799.1| terminase large subunit [Enterococcus phage phiFL1B]
gi|270209324|gb|ACZ63868.1| terminase large subunit [Enterococcus phage phiFL1C]
Length = 413
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 16/248 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + T + + +E ++V+ E ++R +AT + P + + Y+
Sbjct: 116 GVGSIRGMTAYGAYINEASLAKQEVFAEIVSRCSATGARILADTNPDNPEHWLKKEYIDN 175
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVE-EDI 122
SS Q +++ +E+ R I S P + KG + G ++ +
Sbjct: 176 SSKSIQSFHFGLDDNTFLSERYRTNIKASTPSGMFYDRDIKGLWVSADGVVYKDFDANKH 235
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I+S D+P G+D+G+ H + + D Y+V+ + + + + V K
Sbjct: 236 YIDSSDLPPLAKYYCGVDWGYDHWGSIVVIGETEDG-TAYLVEEHASQYEEIDYWVGIAK 294
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
P D E +S + + E + +G+ + R
Sbjct: 295 EIQARYGGRIP---FYCDSARPEHVS--------RFVREGLNAINAFKARLSGVESVAKR 343
Query: 243 MRSGRWKV 250
++ R +
Sbjct: 344 FKTNRLYI 351
>gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism
MedDCM-OCT-S04-C1073]
Length = 311
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/247 (11%), Positives = 72/247 (29%), Gaps = 18/247 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
D + + DE D ++ E + ++ +G TP + + Y
Sbjct: 61 NSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKGYCVFIGTPAGMNNNFYDLYQH 120
Query: 64 -ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-----GRIFPI 117
+ D + ++T + +E ++ + + + + I G
Sbjct: 121 ANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKKYLQEFECDWIANIEGAIYGEEIAK 180
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+E+ I + D G + + + ++ + R +
Sbjct: 181 IEDKNQIARVPYDPTLPVSTAWDLGVADHSSIIFF--QQKGTGVQIIDYHEERGHGLPHY 238
Query: 178 VAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ L+ + PHD + +G+ + G++ VE GI
Sbjct: 239 IQMLEEKPYIYKDHFAPHDIDVQEFGNGKTRREIAYQLGVRFKVVPKLP------VEEGI 292
Query: 237 SDMLDRM 243
+ +
Sbjct: 293 HAVTMLI 299
>gi|293374297|ref|ZP_06620625.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis
PC909]
gi|292647130|gb|EFF65112.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis
PC909]
Length = 418
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/251 (16%), Positives = 83/251 (33%), Gaps = 28/251 (11%)
Query: 7 GRDKWQSNTVHYV---WFDE--EPPEDVYFEGLTRINA--TQGLVTLTLTPLKGRSPIIE 59
+K +++ V + +E E P+++ + R+ A + P+ +
Sbjct: 112 DEEKL--LSINGVTDFFIEEIFEVPQEIVDQIDLRLRAKAPYLQIYGCFNPISPHHWLHG 169
Query: 60 HYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF--- 115
D R + P + + + + R E G+
Sbjct: 170 FCEGDKQPADLFYDRSNYKDNPFLPQSYVDSLESLKTRNPNKYRIFAEGNWGTDLDGLVF 229
Query: 116 ----PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
I DI +N++ + W GMD G P A ++N + +Y++K + R
Sbjct: 230 KHINFINSHDIDVNAMLKDKSWQVRCGMDIGELDPTAIAVSLFNERTQALYLIKEFYQRG 289
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
T A+ + G + Q+ + + +G+ P G+
Sbjct: 290 ATLDEMYEAIINLGIQKQKIYVDSA-------SPQVISYLKSKGINAQPCI----KGAGS 338
Query: 232 VEAGISDMLDR 242
VEA IS + +
Sbjct: 339 VEARISYLQNL 349
>gi|221316961|ref|YP_002533105.1| putative terminase large subunit - phage associated [Bacillus
cereus Q1]
gi|221243293|gb|ACM16001.1| putative terminase large subunit - phage associated [Bacillus
cereus Q1]
Length = 425
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 30/261 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPE------DVYFEGLTRINATQG---LVTL 46
+ + K +S + WF+E + + R G +
Sbjct: 109 FRGAD-DPAKIKSIKIAKYPVAIAWFEELAEFKLEEDVSTIEKSILRKELPNGLRYKMYY 167
Query: 47 TLTPL-KGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSY--PLHEREAR 102
+ P + +S + + + + + V T ++ PH ++Q + ++ + E
Sbjct: 168 SYNPPKRKQSWVNKKFETQFKPKNTFVHHSTYHDNPHISKQFVEEAEETKRLKPQQYEHE 227
Query: 103 TKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPF-AAGHLVWNRDSDVI 161
+G+P GSG + I +I G+D+G+ + + G + +++ +
Sbjct: 228 YEGKP-TGSGVVPFSNLTFRRITDEEIKTFDNIRQGIDWGYGNDALSFGRMHYDKTRRKL 286
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
Y+ + + +K G W + D + + G+K
Sbjct: 287 YIFGEIHGVKISNRSLAEKIKQLG------WDDVEIIADSSEPKSIDEMKNDHGIK---R 337
Query: 222 CATFDDGSNGVEAGISDMLDR 242
G VE G + D
Sbjct: 338 IKGAVKGPGSVEYGEKWLDDL 358
>gi|307270085|ref|ZP_07551405.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4248]
gi|306513580|gb|EFM82192.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4248]
Length = 425
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 114 AQNPERIKSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGDGLFYKFFFSYNP 173
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S+ D V T + P + + K + + + AR + +
Sbjct: 174 PKRRQSWVNKKYESSFQPDNTFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE 233
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P E I + G+DFG+ P A +++ + IY V
Sbjct: 234 AIGSGVVPFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAV 293
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + K+ G + D + D + ++ G +
Sbjct: 294 DEIYGVKISNREFAQKAKAKG------YQSDRIASDSAEPKSIAELNNEHG---MGHVFG 344
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 345 VKKGPDSVEYGEQWLDDL 362
>gi|257066327|ref|YP_003152583.1| phage terminase, large subunit, PBSX family [Anaerococcus prevotii
DSM 20548]
gi|256798207|gb|ACV28862.1| phage terminase, large subunit, PBSX family [Anaerococcus prevotii
DSM 20548]
Length = 412
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 17/249 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
G + + T + + +E E V+ E +R + + P + + Y+
Sbjct: 117 GLGRIRGMTSYGAYVNEASLANELVFDEIRSRCSGKGARIICDTNPDNPEHWLKKEYIDN 176
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEED-I 122
+ + TI + +++ + ID+ P E G + G G ++ +
Sbjct: 177 PTDRILSYKFTIFDNTFLDKRYLQSTIDTTPDGMFTERNIYGNWVSGEGVVYKGFDPKRH 236
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ SLD I G+D+G+ H + + D Y+++ + + Q F VA K
Sbjct: 237 YVKSLDGIRFSSYIAGVDWGYGHYGSIVVFGISNDG-KYYMIEEHAEQYQEIDFWVAVAK 295
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
D E + + E V GI +
Sbjct: 296 DIANRYKGIV----FYCDSARVEHID--------RFSREGLVAYMADKAVIPGIEAVSIL 343
Query: 243 MRSGRWKVF 251
++ + ++
Sbjct: 344 YKTDKLFIY 352
>gi|273809729|ref|YP_003344848.1| terminase large subunit [Streptococcus phage ALQ13.2]
gi|224812481|gb|ACN64874.1| terminase large subunit [Streptococcus phage ALQ13.2]
Length = 411
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/248 (13%), Positives = 82/248 (33%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + + P + Y+
Sbjct: 115 SGLKRARGFTAFGAYVNEASLANEIVFKEIISRCSGEGARIVWDSNPDNPNHWLNRDYIG 174
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
+ +++ +++ + I + P + G + G I+ + I
Sbjct: 175 KNDGKIIDFSFKLDDNTFLSKRYIESIKAATPKGKFYDRDILGRWTVAEGAIYADYDSKI 234
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ ++P+ GG+D+G+ H + + D + Y+V + + + V +
Sbjct: 235 HVVD-ELPDMKRYFGGIDWGYTHYGSIVVVGEGVDGN-YYLVDGVAAQFKEIDWWVEQTR 292
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + D E ++ + E + + V AGI +
Sbjct: 293 KLT----GIYGNIPFYADSARPEHVA--------RFESEGFDISNANKSVMAGIELIAKL 340
Query: 243 MRSGRWKV 250
+ + V
Sbjct: 341 FKEQKLYV 348
>gi|314938435|ref|ZP_07845725.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a04]
gi|314940850|ref|ZP_07847760.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133C]
gi|314953782|ref|ZP_07856647.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133A]
gi|314994570|ref|ZP_07859832.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133B]
gi|314997239|ref|ZP_07862219.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a01]
gi|313588686|gb|EFR67531.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a01]
gi|313591038|gb|EFR69883.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133B]
gi|313594222|gb|EFR73067.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133A]
gi|313600298|gb|EFR79141.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133C]
gi|313642244|gb|EFS06824.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a04]
Length = 434
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 76/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 113 AQNPERIKSLKDSKFPFAIGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNP 172
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D + T + P +++ K + + + R A + +
Sbjct: 173 PKRKQSWVNKKYETSFQPDNTFIHHSTYRDNPFISKEFLKEVEATRASNPRRAEWEYDGK 232
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I I G+D+G+ P A +++ + IY +
Sbjct: 233 AVGSGVVPFDNLQVKKGSITDEMISNFDNIRNGLDYGYATDPLAFVRWHYDKKKNGIYAI 292
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + + GMK +
Sbjct: 293 DEIYGVKISNREFANKAKSKGYQNEEIFS------DSAEPKSNAELVNEHGMKGI---KG 343
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 344 VKKGPDSVEYGEQWLDDL 361
>gi|237746327|ref|ZP_04576807.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377678|gb|EEO27769.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 489
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/288 (12%), Positives = 79/288 (27%), Gaps = 44/288 (15%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE---DVYFEGLTRINATQGL----VTLTLTPLKGRS 55
A E + + ++ F+E + ++ ++ + T P
Sbjct: 135 ATEDDYWNYHGHEYPWLGFEELTNWRNLSFFEAMMSTCRSSYPGMPRMIRATCNPFGVGH 194
Query: 56 PIIEHYLS------------ASSSDRQVIRMTINETPH---YNEQERKRIIDSYPLHERE 100
++ R I +I E H + + + ++
Sbjct: 195 AAVKARYRIGEVSAGVIIHEPGQQPRVRIHSSIYENDHLLKNDPDYLPTLEAISDPNRKK 254
Query: 101 ARTKGEPILGSGRIFPIVEE--DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS 158
A G+ + G V + V IP W MD+G+ P+A N D
Sbjct: 255 AWLNGDWDIHVGSFLEGVWDAAKHVTEPFAIPPSWTVWKAMDWGYAAPYAVYWFAMNPDG 314
Query: 159 DVIYVVKNYRCREQT--------PIFHVAALKSW-------GKWLPWAWPHDGLQHDKRS 203
IY+ + + +K G + +
Sbjct: 315 -CIYLWRELYGAGEKAGQGSREDAADVARKIKKMEERDERFGYDYRINLADPSIFSKNGT 373
Query: 204 GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ +R +G++ + G +++ + G+ K+F
Sbjct: 374 DRSIGQIFRDEGIRWQEAW----NAKGSRVNGAQEIIRLLAEGKLKIF 417
>gi|212703351|ref|ZP_03311479.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098]
gi|212673197|gb|EEB33680.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098]
Length = 509
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/265 (10%), Positives = 67/265 (25%), Gaps = 35/265 (13%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + + DE P +V+ + L + +G TP + + + +
Sbjct: 117 NAQALRGLYLDDLVLDEPADIPREVWSQILRPALADRRGRALFCGTPKGCDNLLHDVWQL 176
Query: 64 A----SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
A ++ R ++T + + E E + + + +
Sbjct: 177 AGSLGAAEGWSRFRFPASQTGYLPQAELDAARSGMSEAEYQQEFECSFAAAVRGAYYAAQ 236
Query: 120 EDIVI-----NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
D L + D G A ++ Y +
Sbjct: 237 LDAADLAGRICPLPVSPDLPVHTAWDLGMDDATAIWFFQVEPSG-TWRMLDYYEASGEGL 295
Query: 175 IFHVAALKSWGK----------------WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKM 218
+ A L + + + PHD + +G+ R G++
Sbjct: 296 AHYAAVLGAKARPEGTATTDGLAGRGFCYGRHLAPHDIRVRELGTGQSRLESAARLGIRF 355
Query: 219 LPECATFDDGSNGVEAGISDMLDRM 243
+ GI + +
Sbjct: 356 DIAPSLPLA------DGIDAVRRAL 374
>gi|319891867|ref|YP_004148742.1| Phage terminase, large subunit [Staphylococcus pseudintermedius
HKU10-03]
gi|317161563|gb|ADV05106.1| Phage terminase, large subunit [Staphylococcus pseudintermedius
HKU10-03]
Length = 424
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/270 (13%), Positives = 87/270 (32%), Gaps = 37/270 (13%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDEEPPEDVYF------EGLTRINATQ---GLVTL 46
+ + K S TV + WF+E + + E + +T+
Sbjct: 107 FRGLD-DPLKITSITVDVGILCWAWFEEAYQIENFDKFSTVVESIRGSLDEPEFFKQITV 165
Query: 47 TLTPLKGRSPIIEHYLSASS--SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + + + T ++ + R D Y + R AR
Sbjct: 166 TFNPWSERHWLKPTFFDEDTRLKNVYSNTTTFRVNEWLDKVDVDRYEDLYRTNPRRARIV 225
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVI 161
GE + G ++ + + ++ G+D+G+ P A V + D+ ++
Sbjct: 226 CDGEWGVAEGLVYDNFVVEDFDWFQIYKKTQFKVHGIDYGFTNDPTALVSAVVDLDNKIL 285
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
++ + + + + + + ++ A+ + +G+K
Sbjct: 286 WLYDEHYEKGMLSDDIYKMIVKKD--------LETAEIKSENDMRMIAELKNKGVK---R 334
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G + + GI + +K++
Sbjct: 335 IVPAVKGPHSIMPGIQYVQG------FKIY 358
>gi|28377533|ref|NP_784425.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1]
gi|28270365|emb|CAD63266.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1]
Length = 428
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 23/235 (9%)
Query: 18 YVWFDEEPPEDVYFEGLTRINATQG-------LVTLTLTPLKGRSPIIEHYLSASSSDRQ 70
++W +E + + + T I + +G VTLT P + + D
Sbjct: 128 WLWVEEAYEIESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQPRDDTF 187
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILGSGRIFPIVEEDIVINSLD 128
V T+ +++ ++R+ Y + R A+ GE + G +F E I N++D
Sbjct: 188 VRTTTVRCNEFVSDEYKQRLYSLYQTNPRRAKTVVDGEWGVAEGLVFEDNIEQIEFNAMD 247
Query: 129 -IPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
I E G+D+G+ P A + + + ++V QT LK G
Sbjct: 248 KIQECGQTGFGLDYGFSNDPNAFVAVAVDVRNKQLWVYNEMYTYHQTTPHIAEWLKVNGY 307
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ Q G+ VEAGI +
Sbjct: 308 ERARIYADSANSERTA-------QLNDLGI-----TNADSVVKTPVEAGIDQLWQ 350
>gi|209559980|ref|YP_002286452.1| Large terminase [Streptococcus pyogenes NZ131]
gi|209541181|gb|ACI61757.1| Large terminase [Streptococcus pyogenes NZ131]
Length = 429
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 36/270 (13%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 111 FRGLD-DELKITSITVDVGLLCWAWFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITV 169
Query: 47 TLTPLKGRSPIIEHYLSASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + + D T ++ +++R D Y + R AR
Sbjct: 170 TFNPWSERHWLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIV 229
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVI 161
GE + G +F E I GMDFG+ P + + + +
Sbjct: 230 CDGEWGVAEGLVFDNFEVVDFDVEKTIQRVKETSAGMDFGFTQDPTTLICVAVDLINKEL 289
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
++ + + V ++ + ++L A+ + +G+ +
Sbjct: 290 WLYNEHYQKAMLTDHIVKMIRDKNMHKSYIAADSAE-------KRLIAEIKSKGVSGIVA 342
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G + G+ M +K++
Sbjct: 343 SL---KGKGSIMQGVQFMQG------FKIY 363
>gi|257885123|ref|ZP_05664776.1| terminase large subunit [Enterococcus faecium 1,231,501]
gi|257820975|gb|EEV48109.1| terminase large subunit [Enterococcus faecium 1,231,501]
Length = 432
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 79/258 (30%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 111 AQNPERIKSLKDSKFPFAIGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNP 170
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ D + T + P +++ K + + + R A + +
Sbjct: 171 PKRKQSWVNKKYETSFQPDNTFIHHSTYQDNPFISKEFLKEVEATRERNPRRAEWEYDGK 230
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I+ + G+DFG+ P A +++ + IY +
Sbjct: 231 AVGSGVVPFDNLQVKKGSISDEMVSNFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + + + G W D ++ D + ++ G +
Sbjct: 291 DEIYGVKISNREFANKVHAKGYW------ADEIRADSAEPKSIAELNNEHG---MTRVFG 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 VKKGPDSVEYGEQWLDDL 359
>gi|256961403|ref|ZP_05565574.1| terminase large subunit [Enterococcus faecalis Merz96]
gi|256951899|gb|EEU68531.1| terminase large subunit [Enterococcus faecalis Merz96]
Length = 432
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 111 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 170
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 171 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 230
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I + G+DFG+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + L G + +D + D + + G+
Sbjct: 291 DEIYGVKISNRELAKKLHEKG------YQNDEIFSDSAEPKSNAELVNEHGIN---HIKG 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 VKKGPDSVEYGEQWLDDL 359
>gi|293383713|ref|ZP_06629621.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
R712]
gi|293387092|ref|ZP_06631657.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
S613]
gi|312906241|ref|ZP_07765253.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 512]
gi|312909587|ref|ZP_07768442.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 516]
gi|291078949|gb|EFE16313.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
R712]
gi|291083496|gb|EFE20459.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
S613]
gi|310627887|gb|EFQ11170.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 512]
gi|311290260|gb|EFQ68816.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
DAPTO 516]
Length = 439
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I + G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + L G + +D + D + + G+
Sbjct: 298 DEIYGVKISNRELAKKLHEKG------YQNDEIFSDSAEPKSNAELVNEHGIN---HIKG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEQWLDDL 366
>gi|321314299|ref|YP_004206586.1| PBSX family phage terminase large subunit [Bacillus subtilis BSn5]
gi|320020573|gb|ADV95559.1| PBSX family phage terminase large subunit [Bacillus subtilis BSn5]
Length = 402
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/259 (11%), Positives = 79/259 (30%), Gaps = 28/259 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
K + T + +E + E ++R + +V + P + Y+
Sbjct: 105 SWKKARGFTSAGAFLNEATALHDSFVKEVISRCSYRGAMVMMDTNPENPMHTVKTDYIDK 164
Query: 65 SSS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFP 116
+ + ++ + + + + I+ S P + G + G I+
Sbjct: 165 DGQRLKNGRLNIRSFHFSLFDNNFLDPEYVESIVASTPSGMFTDRDIYGYWVAPEGVIYK 224
Query: 117 IVEEDIVI-----NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+D G+D+G+ HP + + + D Y+++ + +
Sbjct: 225 DFNKDKHYISSKETENKQVNFTKYFAGVDWGYEHPGSIVVIGQD-DQGCFYLLEEHCKQH 283
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+ + V K + + + D E + ++ E D
Sbjct: 284 EEIDYWVKVAK----DIKERYGNINFYCDTARPEHI--------VRFRREKLRALDADKA 331
Query: 232 VEAGISDMLDRMRSGRWKV 250
V +GI ++ + +
Sbjct: 332 VVSGIEEVARLFKRDLLFI 350
>gi|23455873|ref|NP_695104.1| hypothetical protein O1205p26 [Streptococcus phage O1205]
gi|2444105|gb|AAC79541.1| ORF26 [Streptococcus phage O1205]
Length = 411
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + V P + Y+
Sbjct: 115 SGLKRARGFTAFGAYVNEASLANELVFKEIISRCSGDGARVVWDSNPDNPNHWLNRDYIG 174
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
+ +++ +++ I + P + G + G I+ + I
Sbjct: 175 KNDGKIIDFSFKLDDNTFLSKRYIDSIKAATPKGKFYDRDILGLWTVAEGAIYADYDSKI 234
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ ++PE GG+D+G+ H + + D++ Y+V + + + V +
Sbjct: 235 HVVD-ELPEMKRYFGGIDWGYTHYGSIVIVGEGVDNN-FYLVDGVAAQFKEIDWWVEQAR 292
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + D E ++ + E + + V AGI +
Sbjct: 293 KLT----GIYGNIPFYADSARPEHVA--------RFENEGFDIMNANKSVIAGIELIAKL 340
Query: 243 MRSGRWKV 250
+ + V
Sbjct: 341 FKEKKLYV 348
>gi|315173781|gb|EFU17798.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX1346]
Length = 439
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I + G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + L G + +D + D + + G+
Sbjct: 298 DEIYGVKISNRELAKKLHEKG------YQNDEIFSDSAEPKSNAELVNEHGIN---HIKG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEQWLDDL 366
>gi|62327097|ref|YP_223885.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
gi|37930114|gb|AAP74512.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
Length = 440
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 78/245 (31%), Gaps = 29/245 (11%)
Query: 20 WFDEEPP------EDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W +E D E + G +T P R + + +
Sbjct: 142 WCEEAYELKSLDAFDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHS 201
Query: 72 --IRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVINSL 127
I T + H N + + + AR GE + G +F + E +
Sbjct: 202 RAITTTYKDNDHLNADYVDSLKEMLVRNPNRARVAVLGEWGIAEGLVFDGLFEQRDFSYD 261
Query: 128 DIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL-KSWG 185
+I + + G+DFG+ H P A + ++D+ ++Y+ + + L K
Sbjct: 262 EIA-NLPKSVGLDFGFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIAQELAKHKA 320
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
LP D + ++ + P G + V GI M+S
Sbjct: 321 FGLPI-------TADSAEQRMIVELSQQHRV---PNIKPSGKGKDSVIQGIQY----MQS 366
Query: 246 GRWKV 250
R+ V
Sbjct: 367 YRFVV 371
>gi|266625996|ref|ZP_06118931.1| phage terminase large subunit [Clostridium hathewayi DSM 13479]
gi|288862104|gb|EFC94402.1| phage terminase large subunit [Clostridium hathewayi DSM 13479]
Length = 270
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 8/170 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T+ V+FDE PE + R + P ++L
Sbjct: 102 ESSQDLIQGITLAGVFFDEVALMPESFVNQATGRCSVDGSKYWFNCNPDGPYHWFKLNWL 161
Query: 63 SASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ ++ T+++ +E ++R + Y + G + G I+ + ED
Sbjct: 162 DKAKEKNLLVLHFTMDDNLSLSEHIKERYRNMYTGVFFKRYILGLWAMAEGIIYDMFSED 221
Query: 122 IVINSLDIPEHW----VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNY 167
+ ++ + +D+G + A RD Y ++ Y
Sbjct: 222 RHVKTILEYARQLIDGGRYVSIDYGTQNATAFLLWNKGRDG-KWYCIREY 270
>gi|326790076|ref|YP_004307897.1| phage terminase, large subunit, PBSX family [Clostridium
lentocellum DSM 5427]
gi|326540840|gb|ADZ82699.1| phage terminase, large subunit, PBSX family [Clostridium
lentocellum DSM 5427]
Length = 412
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 24/236 (10%)
Query: 21 FDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS----DRQVIRMTI 76
DE D R + P+ + + +++ + V++ T
Sbjct: 133 LDEVSQLD----LRLRAKVDNLQMYFAFNPVSKDNFVYKYFHRDDPDTTPSNMFVLKTTF 188
Query: 77 NETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQI 136
+ + ++ + + E + E + + + +
Sbjct: 189 KDNKFLPQSYIDSLMAMKDSNPIYYKIYVEGDFATLDKLIFAYEIKDFDWREKLKTGIAC 248
Query: 137 GGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHD 195
GMDFG+ P A V N D I++ + A + + + +
Sbjct: 249 FGMDFGYTNDPAAFSAFVVNEDQREIWIFDEIYKKGLLNNQLAAEI------IYHGFQKE 302
Query: 196 GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ D + + + + G+ G V GI + +K++
Sbjct: 303 VITADCQDQQSIDELRTQYGIS---RIKRSWKGKGSVLQGIQYIQQ------FKIY 349
>gi|9635008|ref|NP_056675.1| gp411 [Streptococcus phage Sfi11]
gi|7523569|gb|AAF63072.1|AF158600_28 gp411 [Streptococcus phage Sfi11]
Length = 411
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + V P + Y+
Sbjct: 115 SGLKRARGFTAFGAYVNEASLANEFVFKEIISRCSGDGARVVWDSNPDNPNHWLNRDYIG 174
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
+ +++ +++ I P + G + G I+ + I
Sbjct: 175 KNDGKIIDFSFKLDDNTFLSKRYIDSIKAVTPKGKFYDRDILGHWTVAEGAIYADYDSKI 234
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ ++PE GG+D+G+ H + + D++ Y+V R + + + V +
Sbjct: 235 HVVD-ELPEMKRYFGGIDWGYTHYGSIVIVGEGVDNN-FYLVDGVRAQFKEIDWWVEQAR 292
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + D E ++ + E + + V AGI +
Sbjct: 293 KLT----GIYGNIPFYADSARPEHVA--------RFENEGFDISNANKSVIAGIELIAKL 340
Query: 243 MRSGRWKV 250
+ + V
Sbjct: 341 FKEQKLYV 348
>gi|149912967|ref|ZP_01901501.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
gi|149813373|gb|EDM73199.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
Length = 467
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 84/284 (29%), Gaps = 45/284 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDV---YFEGLTRINATQGLVTLTLTPLK---GRSP 56
+ R K++ +Y+ FDE P DV Y R + T G+
Sbjct: 119 DADRLKYRGRAWNYIGFDELTLWPTDVCYLYLFSRCRSTDPTLPRLIRATTNPDGPGQGW 178
Query: 57 IIEHYLSASS--------------------SDRQVIRMTINETPHYNEQERKRIIDSYPL 96
++E + S R I ++E PH +E + + P
Sbjct: 179 VMERWGINEDGQATRVPIDTVDAEMRRITTSYRTFIPARLSENPHLSETGYREALLQLPP 238
Query: 97 HEREARTKGEP--ILGSGRIFPIVEEDIVI----NSLDIPEHWVQIGGMDFGWHHPFAAG 150
ER+A G G + ++ S+ D GW+ A
Sbjct: 239 DERDALLMGLWRQGRVHGAYYANEMAEMRNRGGIRSVPYDPSEPVNTFWDLGWNDTTAIW 298
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL---PWAWPHDGLQHDKRSGEQL 207
+ + ++ Y ++ + L++ G + PHD ++G+
Sbjct: 299 F--HQQIAGEHRFIRAYENSGESLDHYATYLQNSGFNVMGGRHYLPHDAQNKSLQTGKSA 356
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + V GI+ M R KVF
Sbjct: 357 LEILQEMLPNL---HFEVVPRIQNVLTGINQTRLAM---RGKVF 394
>gi|148257070|ref|YP_001241655.1| putative phage terminase large subunit [Bradyrhizobium sp. BTAi1]
gi|146409243|gb|ABQ37749.1| putative phage Terminase large subunit [Bradyrhizobium sp. BTAi1]
Length = 428
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 14/234 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ + W DE V L R I A + + + P + + + S
Sbjct: 110 SIKSLEGFRI--AWIDEAQTLSVRSLSLLRPTIRAPRSELWASWNPRRKSDAVDDFLRSR 167
Query: 65 SSSDRQVIRMTINETPHYNE--QERKRIIDSYPLHEREARTKGEPILGSGRIFPIV---- 118
V++ + P E +R+ + E +G+ + +
Sbjct: 168 KPDGAVVVKANWRDNPWLPAVLDEERRLDLALYPDRYEHIWEGDYVRAFEGAYFADLLAQ 227
Query: 119 ---EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
E I + D + A + + + V+ Y Q
Sbjct: 228 ARREGRIGKVAADPLLPLRAFIDIGGAGASADAFTIWIVQWVGNEVRVLDYYEAVGQVLA 287
Query: 176 FHVAALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
FHV L++ G + PHDGL + +G++ + R G + P G
Sbjct: 288 FHVNWLRARGYQNAILYLPHDGLATNAVTGKRYADHLREAGFAVEPPVKNQGRG 341
>gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM]
gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM]
gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis]
gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125]
gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola]
gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1]
gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10]
gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis]
gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125]
gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola]
gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004]
gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038]
gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 418
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 73/254 (28%), Gaps = 12/254 (4%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + +H+V DE + D +++ L ++ L + KG S + +
Sbjct: 110 PDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQ 169
Query: 66 SSD------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ D + + ++P E + + SGR++ +
Sbjct: 170 NKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFD 229
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
++ + L G DF + L + ++ V + T
Sbjct: 230 RNVHVKPLQFNPKLPIWVGQDFNIDPMSSVI-LQPQPNGELWAVDEVVLFSSNTAEVCDE 288
Query: 180 ALK---SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ W + G GE ++ +G + ++ V A
Sbjct: 289 LERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVN 348
Query: 237 SDMLDRMRSGRWKV 250
++ R +
Sbjct: 349 RMLMSASGETRLYI 362
>gi|310779844|ref|YP_003968176.1| phage terminase, large subunit, PBSX family [Ilyobacter polytropus
DSM 2926]
gi|309749167|gb|ADO83828.1| phage terminase, large subunit, PBSX family [Ilyobacter polytropus
DSM 2926]
Length = 422
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/247 (13%), Positives = 81/247 (32%), Gaps = 29/247 (11%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASS-SD 68
++W +E E ++ E + + +TLT+ P + + + + A + D
Sbjct: 129 WMWLEECYEITNEDSFNMLDESIRGQSPGNLFKQITLTMNPWNEKHWVKKRFFDAENDPD 188
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVI-N 125
++ + K + + R + GE + G ++ EE +
Sbjct: 189 ILAKTTNYKCNEFLDKADLKVFENMKKNNPRRYQVAGLGEWGIVDGLVYENWEEKEFDTD 248
Query: 126 SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + I G+DFG+ P A + + + I+V + +
Sbjct: 249 DISARKSVKSIFGLDFGYTNDPTALFCGLIDLEKKEIFVFDEIYKKALRNKMIYEEISKR 308
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
G + + + D + + R G++ G + + GI +
Sbjct: 309 G------YSKEKITADSAEPKSIDE-LRDLGLR---RIIGAAKGKDSINNGIQFIQG--- 355
Query: 245 SGRWKVF 251
+K++
Sbjct: 356 ---FKIY 359
>gi|149915122|ref|ZP_01903650.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
gi|149810843|gb|EDM70682.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
Length = 467
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 84/284 (29%), Gaps = 45/284 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDV---YFEGLTRINATQGLVTLTLTPLK---GRSP 56
+ R K++ +Y+ FDE P DV Y R + T G+
Sbjct: 119 DADRLKYRGRAWNYIGFDELTLWPTDVCYLYLFSRCRSTDPTLPRLIRATTNPDGPGQGW 178
Query: 57 IIEHYLSASS--------------------SDRQVIRMTINETPHYNEQERKRIIDSYPL 96
++E + S R I ++E PH +E + + P
Sbjct: 179 VMERWGIKEDGQATRVPIDTVDAEMRRITTSYRTFIPARLSENPHLSETGYREALLQLPP 238
Query: 97 HEREARTKGEP--ILGSGRIFPIVEEDIVI----NSLDIPEHWVQIGGMDFGWHHPFAAG 150
ER+A G G + ++ S+ D GW+ A
Sbjct: 239 DERDALLMGLWRQGRVHGAYYANEMAEMRNRGGIRSVPYDPSEPVNTFWDLGWNDTTAIW 298
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL---PWAWPHDGLQHDKRSGEQL 207
+ + ++ Y ++ + L++ G + PHD ++G+
Sbjct: 299 F--HQQIAGEHRFIRAYENSGESLDHYATYLQNSGFNVMGGRHYLPHDAQNKSLQTGKSA 356
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + V GI+ M R KVF
Sbjct: 357 LEILQEMLPNL---HFEVVPRIQNVLTGINQTRLAM---RGKVF 394
>gi|307286565|ref|ZP_07566657.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0109]
gi|306502276|gb|EFM71557.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0109]
Length = 439
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I + G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITEEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + L G + +D + D + + G+
Sbjct: 298 DEIYGVKISNRELAKKLHEKG------YQNDEIFSDSAEPKSNAELVNEHGIN---HIKG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEQWLDDL 366
>gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2]
gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2]
gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2]
gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2]
Length = 432
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 75/256 (29%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQGLVTLTLT--- 49
Q ++ +S W +E + L T
Sbjct: 119 AQNPERIKSLKDSRFPFAIGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNP 178
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRM-TINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
P + +S + + Y S + T + P ++ + ER R +
Sbjct: 179 PKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 238
Query: 109 L-GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
GSG + I + + G+D+G+ P A +++ + IY +
Sbjct: 239 AIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFVRWHYDKKKNGIYAIDE 298
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Y ++ + L + G + D + + + + G+K
Sbjct: 299 YYGQKISNRQLAKWLTTKG------YQSDEMFAESAEPKSNAELKNEFGIK---RIKGVK 349
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 350 KGPDSVEFGERWLDDL 365
>gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
Length = 418
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 73/254 (28%), Gaps = 12/254 (4%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + +H+V DE + D +++ L ++ L + KG S + +
Sbjct: 110 PDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQ 169
Query: 66 SSD------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ D + + ++P E + + SGR++ +
Sbjct: 170 NKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFD 229
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
++ + L G DF + L + ++ V + T
Sbjct: 230 RNVHVKPLQFNPKLPIWVGQDFNIDPMSSVI-LQPQPNGELWAVDEVVLFSSNTAEVCDE 288
Query: 180 ALK---SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ W + G GE ++ +G + ++ V A
Sbjct: 289 LERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVN 348
Query: 237 SDMLDRMRSGRWKV 250
++ R +
Sbjct: 349 RMLMSASGETRLYI 362
>gi|291335056|gb|ADD94686.1| hypothetical protein [uncultured phage MedDCM-OCT-S08-C620]
Length = 233
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/219 (11%), Positives = 62/219 (28%), Gaps = 15/219 (6%)
Query: 9 DKWQSNTVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + + V FDE + L R+ + T +G S + +
Sbjct: 9 QRLRGQNLCAVGFDEADTVNKRDAEQAMNMALARLRSGNVQQFYATTTPEGHSWAFDTFE 68
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI--LGSGRIFPIVEE 120
+ D ++I+ + P+ + ++++YP +A G
Sbjct: 69 KNAKEDTRLIKARTADNPYLPDGFIDSLLENYPPQLIQAYLNGNFCNLTTGQVYDKFNRN 128
Query: 121 DIVINSLDI-PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
V+ + ++ G+DF + A + + V+ T
Sbjct: 129 THVLQNDPYVDDNEPLRIGIDFNIGNMNAVIGVAV---GNKFMVIDEIAKSHDT-DTIAK 184
Query: 180 ALKSWG--KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
+K+ + G + + G+
Sbjct: 185 EIKARYPFNKIYVYPDASGGNRSTNASKTDIQILESYGL 223
>gi|169346779|ref|ZP_02865730.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169297061|gb|EDS79183.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 402
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 94/251 (37%), Gaps = 20/251 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ + T + +E E+V+ E R + + + P + + +++
Sbjct: 115 DLGRIRGMTAFGAYINEGTMANEEVFNEIKARCSGEGARILIDTNPDQPEHWLKVNFIDK 174
Query: 65 SSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEEDI 122
+ Q +++ +E+ R+ I S P + KG + G ++ +D+
Sbjct: 175 ADGKVIQAYHYELDDNTFLSERYRENIKASTPSGMFTDRDIKGLWVSAEGIVYKDFRKDV 234
Query: 123 VI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+ L G+D+G+ H + + + D D +Y++K Y + + + V
Sbjct: 235 HYIQSSKLKGINFVKYFAGVDWGYEHFGSVVVIGQD-DKDNLYLLKEYSRQYEEIDYWVN 293
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
GK + + + D E ++ Y+++G++ + V +GI +
Sbjct: 294 V----GKEIKSKYGNITFFCDSARPEHVAR-YKKEGLR-------AKNADKAVLSGIESV 341
Query: 240 LDRMRSGRWKV 250
R ++ V
Sbjct: 342 AKRFKTKTLFV 352
>gi|256960132|ref|ZP_05564303.1| phage terminase large subunit [Enterococcus faecalis Merz96]
gi|256950628|gb|EEU67260.1| phage terminase large subunit [Enterococcus faecalis Merz96]
Length = 342
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 6/172 (3%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 127 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 186
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE-E 120
+ + I T+ + P +E+ R Y + +G +L G IF + E
Sbjct: 187 DKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDAE 246
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
+V +D+G + + + Y + Y +
Sbjct: 247 TMVKEPPKNAIASQYYVSIDYGTQNATVFLLWA--KYEENWYCIDEYYYSGR 296
>gi|295113782|emb|CBL32419.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76]
gi|315035888|gb|EFT47820.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0027]
Length = 425
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G + P
Sbjct: 114 AQNPERIKSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNP 173
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + K + + + AR + +
Sbjct: 174 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE 233
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P E I + G+DFG+ P A +++ + IY V
Sbjct: 234 AIGSGVVPFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAV 293
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + K+ G + D + D + ++ GM
Sbjct: 294 DEIYGVKVSNREFAQKAKAKG------YQSDRIASDSAEPKSIAELNNEHGMS---HVFG 344
Query: 225 FDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 345 VKKGPDSVQYGEEWLDDL 362
>gi|256956800|ref|ZP_05560971.1| terminase large subunit [Enterococcus faecalis DS5]
gi|256947296|gb|EEU63928.1| terminase large subunit [Enterococcus faecalis DS5]
Length = 424
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G + P
Sbjct: 113 AQNPERIKSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNP 172
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + K + + + AR + +
Sbjct: 173 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE 232
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P E I + G+DFG+ P A +++ + IY V
Sbjct: 233 AIGSGVVPFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAV 292
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + K+ G + D + D + ++ GM
Sbjct: 293 DEIYGVKVSNREFAQKAKAKG------YQSDRIASDSAEPKSIAELNNEHGMS---HVFG 343
Query: 225 FDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 344 VKKGPDSVQYGEEWLDDL 361
>gi|56808979|ref|ZP_00366686.1| COG1783: Phage terminase large subunit [Streptococcus pyogenes M49
591]
gi|71910836|ref|YP_282386.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
gi|71853618|gb|AAZ51641.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
Length = 424
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 75/256 (29%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQGLVTLTLT--- 49
Q ++ +S W +E + L T
Sbjct: 111 AQNPERIKSLKDSRFPFAIGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNP 170
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRM-TINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
P + +S + + Y S + T + P ++ + ER R +
Sbjct: 171 PKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 230
Query: 109 L-GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
GSG + I + + G+D+G+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFVRWHYDKKKNGIYAIDE 290
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Y ++ + L + G + D + + + + G+K
Sbjct: 291 YYGQKISNRQLAKWLTTKG------YQSDEMFAESAEPKSNAELKNEFGIK---RIKGVK 341
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 KGPDSVEFGERWLDDL 357
>gi|291334642|gb|ADD94290.1| protein of unknown function DUF264 [uncultured phage
MedDCM-OCT-S04-C64]
Length = 382
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 21/252 (8%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
D + V DE + ++ E + + + + KG + + Y +A
Sbjct: 70 NPDHLRGLGFDGVVMDEYGQMSSRLWSEVVRPSLVDRKGWGVFIGTPKGYNSFYDLYEAA 129
Query: 65 SSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-----GRIFPIV 118
D V +ET + ++ E + + GR+
Sbjct: 130 KKDSDWYVAIHRASETGYVSQDELDAAKKQMSEEQYNQEFECSWTAAIQGSYYGRLLEEA 189
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+++ I+ ++ + D G A R+ I ++ Y + +V
Sbjct: 190 QKEQRISKINHDPALLVETWWDLGISDSTAIWFA--QRNGAEIRLIDYYEATGEPLTHYV 247
Query: 179 AALKSWGKWLP-----WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
L+ K +PHD Q +G G+++ VE
Sbjct: 248 NVLEEKAKAGKWKFGNHVFPHDVRQRSLDTGRTRIEALNSLGIEVTIAPLQK------VE 301
Query: 234 AGISDMLDRMRS 245
GI + ++++
Sbjct: 302 DGIEAVRRQLKN 313
>gi|237748196|ref|ZP_04578676.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229379558|gb|EEO29649.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 474
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 80/288 (27%), Gaps = 44/288 (15%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE---DVYFEGLTRINATQGL----VTLTLTPLKGRS 55
A E + + ++ F+E + L+ ++ + T P
Sbjct: 115 ATEDDYWNYHGHEYCWLGFEELTNWKDLSFFEAMLSTCRSSFPGMPRMIRATCNPFGVGH 174
Query: 56 PIIEHYL------------SASSSDRQVIRMTINETPH---YNEQERKRIIDSYPLHERE 100
++ R I +I E H + + + ++
Sbjct: 175 GAVKARYKIGEVSAGTIIREEGQQARVRIHSSIYENEHLLKNDPNYLPTLEAISDPNRKK 234
Query: 101 ARTKGEPILGSGRIFPIVEE--DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS 158
A G+ + G V + +++ IP W MD+G+ P+A + D
Sbjct: 235 AWLLGDWDIHVGSFLEGVWDASKHIVDPFPIPSSWTVWKAMDWGYSAPYAVYWFAMDCDG 294
Query: 159 DVIYVVKNYRCRE--------QTPIFHVAALK-------SWGKWLPWAWPHDGLQHDKRS 203
IY+ + + +K G + +
Sbjct: 295 -CIYLWRELYGAGEKAGQGSREGAAEVARKIKRIEEHDNRLGYEYRLNLADPSIFSKNGT 353
Query: 204 GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ +R G++ L + G +++ + + K+F
Sbjct: 354 DRSIGQIFRDNGVRWLEAW----NAKGSRVNGAQEIIRLLAEDKLKIF 397
>gi|78043214|ref|YP_360500.1| prophage LambdaCh01, PBSX family terminase large subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995329|gb|ABB14228.1| prophage LambdaCh01, terminase, large subunit, PBSX family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 420
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 30/258 (11%)
Query: 1 LKAYEQGRDKWQSNT-----VHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLT 49
+ ++ K +S + ++W++E + + + L R Q +V T
Sbjct: 110 FRGADK-PKKIRSTKVSKGYIKFIWYEEVDEFNGMEEIRIINQSLMR-GGEQFVVFYTYN 167
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKG 105
P + + + DR+V T P EQ ++E G
Sbjct: 168 PPNRVNAWVNEEILIERPDRKVHHSTYLTVPREWLGEQFLIEAEHLKRINERAYRHEYLG 227
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVV 164
E I G+G I +I G+D+G+ P ++R +++
Sbjct: 228 E-ITGTGGEIFSNITIRKITDDEIKAFDRIRRGIDWGYAVDPVHYTVCHYDRTRRRLFIF 286
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ +K K + + D + ++ + G+K+
Sbjct: 287 YEIHQVGLSNRRLAELIKEENK------LNSPITADSAEPKSIAE-LKSYGLKVYGA--- 336
Query: 225 FDDGSNGVEAGISDMLDR 242
G VE GI + D
Sbjct: 337 -KKGPGSVEFGIKFLQDL 353
>gi|256617871|ref|ZP_05474717.1| phage terminase large subunit [Enterococcus faecalis ATCC 4200]
gi|256597398|gb|EEU16574.1| phage terminase large subunit [Enterococcus faecalis ATCC 4200]
Length = 342
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 6/172 (3%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T +FDE P+ + R++ P +L
Sbjct: 127 EASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHWFKLEWL 186
Query: 63 SASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE-E 120
+ + I T+ + P +E+ R Y + +G +L G IF + E
Sbjct: 187 DKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIFDNFDAE 246
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
+V +D+G + + + Y + Y +
Sbjct: 247 TMVKEPPKNAIASQYYVSIDYGTQNATVFLLWA--KYEENWYCIDEYYYSGR 296
>gi|66396200|ref|YP_240530.1| ORF009 [Staphylococcus phage 29]
gi|62636617|gb|AAX91728.1| ORF009 [Staphylococcus phage 29]
Length = 402
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 109 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSHKGARILIDTNPENPMHPVKKDYIDKS 168
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 169 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 228
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 229 FKEKVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 287
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 288 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 335
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 336 GIEVISRLFKLNKIFI 351
>gi|323481151|gb|ADX80590.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
62]
Length = 422
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 111 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 170
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 171 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 230
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 291 DEIYGVKISNRKFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 VKKGPDSVEYGEEWLGDL 359
>gi|259501596|ref|ZP_05744498.1| phage terminase large subunit [Lactobacillus iners DSM 13335]
gi|302191426|ref|ZP_07267680.1| Phage terminase large subunit, ATPase [Lactobacillus iners AB-1]
gi|259166991|gb|EEW51486.1| phage terminase large subunit [Lactobacillus iners DSM 13335]
Length = 406
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 86/248 (34%), Gaps = 24/248 (9%)
Query: 11 WQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA--SS 66
+ T + + +E V+ E R + + P + Y+ S+
Sbjct: 120 IRGMTSYGAYINEASLSTHAVFQEIKQRCSKEGARIICDTNPDIPTHWLKTEYIDNVDSN 179
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REARTKGEPILGSGRIFPIVEEDIVIN 125
+ + TI++ P + + S P + KG + G G ++ +++ +
Sbjct: 180 AGIKYFMFTIDDNPTLPKDYVVSLKASTPKGMFYDRAIKGLWVTGDGIVYRDFDKE-TMI 238
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH---VAALK 182
+P++ G+D+G+ H A + D Y+V+++ + Q + ++
Sbjct: 239 VDKVPQNLNYYVGVDWGFEHKNAILVFG-DDDKGNTYLVESHTGKHQYIDYWIKVAKDIQ 297
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
W + + +++ G+K + + AGI + +
Sbjct: 298 KRYGRNINYWCDSAR-------PEHVSAFQKAGLKARN-------ANKSILAGIEKVSEL 343
Query: 243 MRSGRWKV 250
M G + +
Sbjct: 344 MTLGNFFI 351
>gi|257090295|ref|ZP_05584656.1| terminase large subunit [Enterococcus faecalis CH188]
gi|256999107|gb|EEU85627.1| terminase large subunit [Enterococcus faecalis CH188]
Length = 430
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 119 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 178
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 179 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 238
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 239 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 298
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 299 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 349
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 350 VKKGPDSVEYGEEWLGDL 367
>gi|312902795|ref|ZP_07761999.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0635]
gi|310633849|gb|EFQ17132.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0635]
gi|315149046|gb|EFT93062.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4244]
gi|315167459|gb|EFU11476.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX1341]
gi|315576726|gb|EFU88917.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0630]
Length = 429
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 298 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEEWLGDL 366
>gi|183603148|ref|ZP_02712947.2| phage terminase large subunit [Streptococcus pneumoniae SP195]
gi|183572674|gb|EDT93202.1| phage terminase large subunit [Streptococcus pneumoniae SP195]
Length = 434
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 118 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 176
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 177 TFNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 236
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 237 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 296
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G L + R + +
Sbjct: 297 IYVFDEAYKVGLITKEVAKMIKDKGYHRSQIVADSAELR-------LIEELRSEH--GIT 347
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 348 RIKESRKGKDSIMAGVSKLQ 367
>gi|148993445|ref|ZP_01822962.1| terminase large subunit [Streptococcus pneumoniae SP9-BS68]
gi|147928000|gb|EDK79020.1| terminase large subunit [Streptococcus pneumoniae SP9-BS68]
Length = 432
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G L + R + +
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHRSQIVADSAELR-------LIEELRSEH--GIT 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|300860887|ref|ZP_07106974.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TUSoD Ef11]
gi|295113272|emb|CBL31909.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76]
gi|300849926|gb|EFK77676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TUSoD Ef11]
Length = 422
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 111 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 170
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 171 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 230
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 291 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 VKKGPDSVEYGEEWLGDL 359
>gi|229545399|ref|ZP_04434124.1| terminase large subunit G2p [Enterococcus faecalis TX1322]
gi|229549646|ref|ZP_04438371.1| terminase large subunit G2p [Enterococcus faecalis ATCC 29200]
gi|255972343|ref|ZP_05422929.1| terminase large subunit G2p [Enterococcus faecalis T1]
gi|229305311|gb|EEN71307.1| terminase large subunit G2p [Enterococcus faecalis ATCC 29200]
gi|229309506|gb|EEN75493.1| terminase large subunit G2p [Enterococcus faecalis TX1322]
gi|255963361|gb|EET95837.1| terminase large subunit G2p [Enterococcus faecalis T1]
gi|315028537|gb|EFT40469.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4000]
Length = 429
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 298 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEEWLGDL 366
>gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10]
gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
Length = 402
Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 73/254 (28%), Gaps = 12/254 (4%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + +H+V DE + D +++ L ++ L + KG S + +
Sbjct: 94 PDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQ 153
Query: 66 SSD------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ D + + ++P E + + SGR++ +
Sbjct: 154 NKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFD 213
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
++ + L G DF + L + ++ V + T
Sbjct: 214 RNVHVKPLQFNPKLPIWVGQDFNIDPMSSVI-LQPQPNGELWAVDEVVLFSSNTAEVCDE 272
Query: 180 ALK---SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ W + G GE ++ +G + ++ V A
Sbjct: 273 LERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVN 332
Query: 237 SDMLDRMRSGRWKV 250
++ R +
Sbjct: 333 RMLMSASGETRLYI 346
>gi|321157214|emb|CBW39198.1| Phage terminase large subunit [Streptococcus phage 8140]
Length = 432
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|307295867|ref|ZP_07575699.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0411]
gi|306496198|gb|EFM65777.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0411]
gi|315169423|gb|EFU13440.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX1342]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 298 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEEWLGDL 366
>gi|225573563|ref|ZP_03782318.1| hypothetical protein RUMHYD_01756 [Blautia hydrogenotrophica DSM
10507]
gi|225039082|gb|EEG49328.1| hypothetical protein RUMHYD_01756 [Blautia hydrogenotrophica DSM
10507]
Length = 395
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/251 (16%), Positives = 88/251 (35%), Gaps = 25/251 (9%)
Query: 10 KWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + +++ YV+ DE + E+V+ +R++ L P + E S
Sbjct: 108 KLRGSSIKYVYGDEVADWNEEVFEMLKSRLDKPYSCFDGALNPQGPNHWLKE--FLDSDF 165
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPL-HEREARTKGEPILGSGRIFPIVEED--IVI 124
D + TI + P +++ + + Y + GE L G ++P+ + +V
Sbjct: 166 DIYCQKYTIFDNPFLDKKFVENLCKEYEGSVYYKRYILGEWALAEGLVYPMFSREKNVVG 225
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE-----QTPIFHVA 179
++ +D+G +PFA G + D ++K + +
Sbjct: 226 GEVEYKRGHQYYVSIDYGTVNPFAVGIF--DFDGRSSTMIKELHYSGRDRDRLDNEGYYS 283
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
L++ LP + S ++ G + +N V GI ++
Sbjct: 284 KLETLIGDLPIEYIVV-----DPSAAGFIETIKKYGKYI------VKGANNDVLNGIQEV 332
Query: 240 LDRMRSGRWKV 250
+ G K+
Sbjct: 333 TKYLNYGILKI 343
>gi|17426268|ref|NP_510934.1| similar to phage O1205 ORF26 ( putative large subunit terminase)
[Staphylococcus phage phiETA]
gi|8918455|dbj|BAA97626.1| unnamed protein product [Staphylococcus phage phiETA]
Length = 405
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 112 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKS 171
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 172 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 231
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 232 FKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 290
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 291 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 338
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 339 GIEVISRLFKLNKIFI 354
>gi|256964712|ref|ZP_05568883.1| terminase large subunit G2p [Enterococcus faecalis HIP11704]
gi|256955208|gb|EEU71840.1| terminase large subunit G2p [Enterococcus faecalis HIP11704]
Length = 430
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 119 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 178
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 179 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 238
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 239 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 298
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 299 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 349
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 350 VKKGPDSVEYGEEWLGDL 367
>gi|307272791|ref|ZP_07554038.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0855]
gi|307275955|ref|ZP_07557088.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2134]
gi|306507285|gb|EFM76422.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2134]
gi|306510405|gb|EFM79428.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0855]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 298 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEEWLGDL 366
>gi|149004553|ref|ZP_01829252.1| terminase large subunit [Streptococcus pneumoniae SP14-BS69]
gi|147757556|gb|EDK64580.1| terminase large subunit [Streptococcus pneumoniae SP14-BS69]
Length = 420
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|332072381|gb|EGI82864.1| phage terminase large subunit [Streptococcus pneumoniae GA17570]
Length = 344
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 28 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 86
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 87 TFNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 146
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 147 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 206
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G L + R + +
Sbjct: 207 IYVFDEAYKVGLITKEVAKMIKDKGYHRSQIVADSAELR-------LIEELRSEH--GIT 257
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 258 RIKESRKGKDSIMAGVSKLQ 277
>gi|66396276|ref|YP_240605.1| ORF009 [Staphylococcus phage 52A]
gi|62636692|gb|AAX91803.1| ORF009 [Staphylococcus phage 52A]
gi|116235547|gb|ABJ88882.1| phage terminase large subunit [Staphylococcus phage 80]
Length = 402
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 109 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSHKGARILIDTNPENPMHPVKKDYIDKS 168
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 169 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 228
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 229 FKEKVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 287
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 288 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 335
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 336 GIEVISRLFKLNKISI 351
>gi|304379029|ref|ZP_07361778.1| PBSX family phage terminase [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|269939875|emb|CBI48246.1| phage terminase [Staphylococcus aureus subsp. aureus TW20]
gi|304342405|gb|EFM08295.1| PBSX family phage terminase [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
Length = 402
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 109 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKS 168
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 169 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 228
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 229 FKEKVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 287
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 288 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 335
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 336 GIEVISRLFKLNKIFI 351
>gi|66396122|ref|YP_240453.1| ORF009 [Staphylococcus phage 55]
gi|162290148|ref|YP_001604131.1| putative large terminase subunit [Staphylococcus phage phiMR11]
gi|62636540|gb|AAX91651.1| ORF009 [Staphylococcus phage 55]
gi|161958578|dbj|BAF95133.1| putative large terminase subunit [Staphylococcus phage phiMR11]
Length = 403
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 110 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKS 169
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 170 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 229
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 230 FKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 288
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 289 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 336
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 337 GIEVISRLFKLNKIFI 352
>gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 424
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 74/256 (28%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQGLVTLTLT--- 49
Q ++ +S W +E + L T
Sbjct: 111 AQNPERIKSLKDSRFPFAIGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNP 170
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRM-TINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
P + +S + + Y S + T + P ++ + ER R +
Sbjct: 171 PKRKQSWVNKKYESQFQPKNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 230
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P ++ + I +DFG+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRFETIPDELYRSFDNIRNAVDFGYATDPLAFVRWHYDKKHNGIYAIDE 290
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
++ + LK ++ +D + D + ++ G+K
Sbjct: 291 LYGQKISNRQLANWLKDK------SYSNDEIFADAAEPKSIAELRNEFGIK---HIRGAK 341
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 KGPDSVEFGERWLDDL 357
>gi|296276230|ref|ZP_06858737.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus MR1]
Length = 402
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 109 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKS 168
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 169 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 228
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 229 FKEKVHYITEEEFKAKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 287
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 288 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 335
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 336 GIEVISRLFKLNKIFI 351
>gi|149012736|ref|ZP_01833712.1| terminase large subunit [Streptococcus pneumoniae SP19-BS75]
gi|147763336|gb|EDK70274.1| terminase large subunit [Streptococcus pneumoniae SP19-BS75]
Length = 432
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQ-IGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ V + + + G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|256619492|ref|ZP_05476338.1| terminase large subunit G2p [Enterococcus faecalis ATCC 4200]
gi|256599019|gb|EEU18195.1| terminase large subunit G2p [Enterococcus faecalis ATCC 4200]
Length = 429
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQVFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ G +P
Sbjct: 298 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNSEHG---MPRVFG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEEWLGDL 366
>gi|307280628|ref|ZP_07561676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0860]
gi|306503994|gb|EFM73211.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0860]
Length = 425
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 78/258 (30%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G + P
Sbjct: 114 AQNPERIKSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNP 173
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S+ D V T + P + + K + + + AR + +
Sbjct: 174 PKRRQSWVNKKYESSFQPDNTFVHHSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGE 233
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P E I + G+DFG+ P A +++ + IY V
Sbjct: 234 AIGSGVVPFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAV 293
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + K+ G + D + D + ++ G +
Sbjct: 294 DEIYGVKISNREFAQKAKAKG------YQSDRIASDSAEPKSIAELNNEHG---MGHVFG 344
Query: 225 FDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 345 VKKGPDSVQYGEEWLDDL 362
>gi|225855376|ref|YP_002736888.1| phage terminase, large subunit, pbsx family [Streptococcus
pneumoniae JJA]
gi|225724280|gb|ACO20133.1| phage terminase, large subunit, pbsx family [Streptococcus
pneumoniae JJA]
Length = 432
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQ-IGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ V + + + G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|149021996|ref|ZP_01835958.1| terminase large subunit [Streptococcus pneumoniae SP23-BS72]
gi|147929840|gb|EDK80829.1| terminase large subunit [Streptococcus pneumoniae SP23-BS72]
Length = 432
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFNKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|321157006|emb|CBW38994.1| Phage terminase large subunit [Streptococcus phage 040922]
Length = 432
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/261 (18%), Positives = 76/261 (29%), Gaps = 32/261 (12%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQ-IGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ V + + + G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYR-RQGMKML 219
IYV +K G L + R G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHRSQIIADSAELR-------LIEELRSEHGIS-- 345
Query: 220 PECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 -RIKESRKGKDSIMAGVSKLQ 365
>gi|327197586|ref|YP_004301277.1| gp2 [Brochothrix phage NF5]
gi|296245409|gb|ADH03023.1| gp2 [Brochothrix phage NF5]
Length = 425
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 80/258 (31%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G + P
Sbjct: 111 AQNPERIKSLKDSKFPFAIGWIEELAEFKNEEEVTTITNSLLRGELGNGLFYKFFYSYNP 170
Query: 51 L-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y + + V T + P ++ K + + + R A + +
Sbjct: 171 PKRKQSWVNKKYETSFQPENTFVHHSTYKDNPFIAKEFLKEVEAARERNPRRAEWEYDGK 230
Query: 109 LGSGRIFPIVEEDIV---INSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P +V I +DFG+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLKVVAGSITDDMTANFDNVRNAVDFGYATDPLAFVRWHYDKKHNCIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ Y ++ + +S G + D + D + ++ + +P
Sbjct: 291 EEYFGQKISNRQFAKWAQSKG------YQSDEIYADSAEPKSIAELRQEH---SMPRVIG 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 VKKGPDSVEYGEEWLDDL 359
>gi|315144732|gb|EFT88748.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2141]
Length = 425
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G + P
Sbjct: 114 AQNPERIKSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNP 173
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + K + + + AR + +
Sbjct: 174 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGE 233
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P E I + G+DFG+ P A +++ + IY V
Sbjct: 234 AIGSGVVPFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAV 293
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + K+ G + D + D + ++ GM
Sbjct: 294 DEIYGVKISNREFAQKAKAKG------YQSDRIASDSAEPKSIAELNNEHGMS---HVFG 344
Query: 225 FDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 345 VKKGPDSVQYGEEWLDDL 362
>gi|321156947|emb|CBW38936.1| Phage terminase large subunit [Streptococcus phage V22]
Length = 432
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 76/260 (29%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|239909154|ref|YP_002955896.1| hypothetical protein DMR_45190 [Desulfovibrio magneticus RS-1]
gi|239799021|dbj|BAH78010.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 488
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 75/288 (26%), Gaps = 56/288 (19%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRIN----------ATQGLVTLTLTPLK 52
E ++Q +H + DE Y R+ + P
Sbjct: 123 ESDVFRYQGVEIHLLCIDELTSFTELQYDYLRGRLRCALDVPPALRHKIPGIVCASNPGG 182
Query: 53 GRSPI-IEHYLSASSSD-------------RQVIRMTINETPHYNEQE--RKRIIDSYPL 96
++ + R I +++ ++ +D+ P
Sbjct: 183 VGHGFAKARFVDFAPPGVCRRAPAAEGGMLRCHIPGRLSDNAILMARDPGYAARLDALPE 242
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
R A G+ + G+ F VI +P D+G+ PF+ G +
Sbjct: 243 PYRTAYRDGDWDVFMGQAFAFQRRLHVIPPRPVPGDAPLYMTFDWGYGAPFSVGWWWVDA 302
Query: 157 DSDVIYVVKNYRCR--------EQTPIFHVAALKSWGKWL------------PWAWPHDG 196
D +Y + + T A + + L P +
Sbjct: 303 DG-RLYRLGEWYGASGAANQGLRLTDPQIAAGILEREQALGLGGRRITRLCGPDCFAKKP 361
Query: 197 LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
G + + G+ + P G + I +R+R
Sbjct: 362 DYRGGGQGPSTAEVFAGAGVFLSP-------GDPSRKNKIRQFHERLR 402
>gi|270209588|gb|ACZ64128.1| terminase [Enterococcus phage phiFL3B]
Length = 427
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 111 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 170
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 171 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 230
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I + G+DFG+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + +K+ G + D + D + ++ +K +
Sbjct: 291 DEIYGVKISNRELAKKVKAKG------YEADRIGADSAEPKSIAELINEHSIK---KLYG 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 342 VKKGPDSVEYGEGWLDDL 359
>gi|42526667|ref|NP_971765.1| phage terminase, large subunit, putative [Treponema denticola ATCC
35405]
gi|41816860|gb|AAS11646.1| phage terminase, large subunit, putative [Treponema denticola ATCC
35405]
Length = 417
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/273 (13%), Positives = 88/273 (32%), Gaps = 40/273 (14%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV---YFEGLTRINA-TQGLVTLTLTPLKGR---SPI 57
+ +Q + ++ FDE + ++R + + T G +
Sbjct: 67 DDDVSNYQGHQYTWIGFDELGNYSSDYCWRYMMSRCRSAKGIPCYMRGTGNPGGVGHGWL 126
Query: 58 IEHYLSASSSD----------RQVIRMTINETPHY--NEQERKRIIDSYPLHEREARTKG 105
+ ++ + + R I +++ + N++ ++ + P + EA KG
Sbjct: 127 KKRFIDNQNPNTIYTDEDGNTRCFIPSRLDDNDYLIKNDKGYEKRLRLLPKYLYEALRKG 186
Query: 106 EPILGSGRIFPIV-EEDIVINSLDIPEH-WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
+ +G F E VI + + W + MD+G+ PF+ G +RD +
Sbjct: 187 NWDIIAGSAFEEFSRESHVIKPIALDPGVWFKFCSMDWGYSRPFSIGWWAVSRDG-RMIR 245
Query: 164 VKNYRCRE---------QTPIFHVAALKSW--GKWLPWAWPHDGLQHDKRSGEQLSAQYR 212
+ E ++ + + + + G ++ ++
Sbjct: 246 YRELYGCENGEANKGVRRSASSIAKEAYALSIAEGVNTMVADPAVWGKTDDGPTIADKFE 305
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
+G K++ N G ++S
Sbjct: 306 VEGWKLI-------KADNDRINGKMQFHQLLKS 331
>gi|307290093|ref|ZP_07570017.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0411]
gi|306498935|gb|EFM68429.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0411]
Length = 434
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 118 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 177
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 178 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 237
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I + G+DFG+ P A +++ + IY +
Sbjct: 238 AIGSGVVPFDNLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 297
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + +K+ G + D + D + ++ +K +
Sbjct: 298 DEIYGVKISNRELAKKVKAKG------YEADRIGADSAEPKSIAELINEHSIK---KLYG 348
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 349 VKKGPDSVEYGEGWLDDL 366
>gi|221142412|ref|ZP_03566905.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|302751711|gb|ADL65888.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
str. JKD6008]
Length = 402
Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 109 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKS 168
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E+ + II S P + G+ + G ++
Sbjct: 169 GQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 228
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 229 FKEKVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 287
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 288 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 335
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 336 GIEVISRLFKLNKISI 351
>gi|229080901|ref|ZP_04213416.1| Phage terminase, large subunit, pbsx [Bacillus cereus Rock4-2]
gi|228702397|gb|EEL54868.1| Phage terminase, large subunit, pbsx [Bacillus cereus Rock4-2]
Length = 385
Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 88/248 (35%), Gaps = 20/248 (8%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
D + T + + +E +DV+ E +R + + + P + Y+
Sbjct: 94 DTIRGMTAYGAYVNEGSLANKDVFDEIKSRCSGEGARILVDTNPDHPEHWLKVDYIDKDD 153
Query: 67 S-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEEDIVI 124
+ + + +++ NE+ R+RI S P R KG G ++ +D+
Sbjct: 154 NVTIKAFQYELDDNTFLNERYRERIKASTPEGMFYDRNIKGLWCSADGVVYKDFNKDVHY 213
Query: 125 ---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
L + G+D+G+ H + + + D + +Y+++ Y + + + V
Sbjct: 214 IEETDLKDIKFTKYFAGVDWGYGHFGSIVVIGED-DEENLYLLEEYAKQHEEIDYWVGVA 272
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
K + + D E + + E + V +GI +
Sbjct: 273 KDVKERYGNIF----FYCDSARPEHIK--------RFKREGLRARNADKSVLSGIEMVAK 320
Query: 242 RMRSGRWK 249
+++ +K
Sbjct: 321 YIKTESFK 328
>gi|117924988|ref|YP_865605.1| hypothetical protein Mmc1_1690 [Magnetococcus sp. MC-1]
gi|117608744|gb|ABK44199.1| protein of unknown function DUF264 [Magnetococcus sp. MC-1]
Length = 445
Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 76/276 (27%), Gaps = 45/276 (16%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED---VYFEGLTRINATQG----LVTLTLTPLKGRSPIIE 59
++Q + ++ +DE Y + + + G + + P ++
Sbjct: 87 DAARYQGHQYTWIGWDELTNWPDDVAYKMLMACLRSAHGIKHKRIRASGNPGGAGHQWVK 146
Query: 60 HYLSASSS-------------DRQVIRMTINETPH---YNEQERKRIIDSYPLHEREART 103
+ R I ++ + + +R+ D A
Sbjct: 147 RRFIDPAPAGYQLLQDELSRHPRIFIPSSVRDNAILTENDPDYVERLKDVGSKELVRAWL 206
Query: 104 KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS----- 158
+G+ + G F +VI +P HW + D+G PF+ G +
Sbjct: 207 EGDWNIIMGAFFDRWSSKMVIKPRALPSHWTRFRAFDWGSARPFSVGWWAVSDGELEGLP 266
Query: 159 -DVIYVVKNYRCR--------EQTPIFHVAALKSWGKWLPWAWPH--DGLQHDKRSGEQL 207
+ + + + + + + D K G +
Sbjct: 267 KNALVRYREWYGSNGNPNVGLKMDAESVARGILAKEAKDETIHYSVADPAIFAKDGGPSI 326
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ R+G++ P + G M RM
Sbjct: 327 GERMAREGVRFKPAD------NRSRVGGWDQMRQRM 356
>gi|227534164|ref|ZP_03964213.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227188204|gb|EEI68271.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 432
Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 72/238 (30%), Gaps = 26/238 (10%)
Query: 19 VWFDEEPP------EDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSA--SSS 67
W++E E + +T P + + + +
Sbjct: 131 AWWEEAYELKSLDAFKTVEETMRGEIDDPDGYYQSIITFNPWSDQHWLKREFFDQDTKNP 190
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVIN 125
+ T + P+ ++ + D + AR G+ + G +F + E +
Sbjct: 191 RSKSFTTTYEDNPYLDDDYIASLKDMVKRNPNRARVAVYGDWGIAEGLVFDGLFEQRDFS 250
Query: 126 SLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL-KS 183
DI + G+DFG+ H P A + ++ + V+Y+ + + L
Sbjct: 251 MEDIAA-LPKAVGLDFGFKHDPTAGEFMAIDQQNRVVYIYDEFYKQGLLTGQIAKELASH 309
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
LP D+ + + G+ P G + V GI M
Sbjct: 310 KAYGLPIM-------ADQAAANLIGELTMAHGV---PNIRAAGKGKDSVSQGIQYMQS 357
>gi|145589311|ref|YP_001155908.1| hypothetical protein Pnuc_1128 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047717|gb|ABP34344.1| protein of unknown function DUF264 [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 444
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/281 (14%), Positives = 78/281 (27%), Gaps = 44/281 (15%)
Query: 10 KWQSNTVHYVWFDEEPPE---DVYFE--GLTRINATQGLVTL--TLTPLKGRSP-IIEHY 61
+ + ++ F+E Y R + + T P + E +
Sbjct: 113 NYHGHEYPWLGFEELTNWRNLSFYEAMHSTCRSSHPGMPRMVRATCNPFGVGHASVKERF 172
Query: 62 LSASSS-----------DRQVIRMTINETPH---YNEQERKRIIDSYPLHEREARTKGEP 107
+ R I TI E H + + + R A +G+
Sbjct: 173 QIGAIPAGQIIRQEGALPRVRIHSTIYENTHLLKNDPNYLMSLESLSDPNRRRAWLEGDW 232
Query: 108 ILGSGRIFPIVEE--DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
+ G V + V+ IP W MD+G+ P+A + D V Y+ +
Sbjct: 233 DIHVGSFLEGVWQPSKHVVEPFAIPPTWKVWRSMDWGYARPYAVYWFALSNDG-VYYLWR 291
Query: 166 NYRCRE--------QTPIFHVAALK-------SWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
+ +K G + + +
Sbjct: 292 ELYGYGDKENTGTREDATVVAEKIKKIEIHDQRLGYEYRMNLADPSIFSKIGAERSIGQI 351
Query: 211 YRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+R +G+K + S G +++ + R K+F
Sbjct: 352 FRDKGVKWTEAY----NASRSRVNGAQEIIRLLAEDRLKIF 388
>gi|327409392|ref|YP_004301534.1| gp2 [Brochothrix phage BL3]
gi|296245468|gb|ADH03081.1| gp2 [Brochothrix phage BL3]
Length = 524
Score = 99.5 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 79/261 (30%), Gaps = 27/261 (10%)
Query: 1 LKAYEQGRDKWQSNTV-----HYVWFDEEPPED------VYFEGLTRINATQGLVTLTLT 49
+ + K +S + +W +E V + + R GL
Sbjct: 111 FRGAD-DPGKIKSIKIAKFPLTILWIEELAEFKLEEEIGVIEKSVLRAKLPPGLSYYFFN 169
Query: 50 ----PLKGRSPIIEHYLSA--SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART 103
P + +S + + Y + + + +V T + PH +++ + Y + ++A
Sbjct: 170 SYNPPKRKQSWVNKKYETKVALAPNTRVHHTTYKDNPHISDEFIEEAEHMYQTNPQKAAW 229
Query: 104 KGEPILGSGRIFPIVEED-IVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVI 161
+ + P I + + G+DFG+ P A +++ +
Sbjct: 230 EYGGEPIGNGVVPFNNLVFRTITNDEFKSFSNIRQGLDFGYATDPVAGVQWHYDKTRRIA 289
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
Y ++ + + A K+ G + D ++
Sbjct: 290 YAMREVYGVKMSNRSLAANAKACGFF------SSLTIADSEDPRTINELQSEHSWPSRYL 343
Query: 222 CATFDDGSNGVEAGISDMLDR 242
G N VE G + D
Sbjct: 344 I-GAKKGPNSVEHGERWLDDL 363
>gi|315650013|ref|ZP_07903093.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM
3986]
gi|315487783|gb|EFU78086.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM
3986]
Length = 425
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 74/237 (31%), Gaps = 24/237 (10%)
Query: 18 YVWFDE------EPPEDVYFEGLTRINATQGLVT----LTLTPLKGRSPIIEHYLSASSS 67
++W +E E ++ E + + +TL P I + +
Sbjct: 134 WMWLEEAYEISNENDFNMLDESIRGAIPKDVKLFKQITITLNPWNEHHWIKKRFFDTPDD 193
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEED-IVI 124
+ + ++ + K + R + GE + G ++ EE I
Sbjct: 194 EVLAMTTNYLCNEWLDKADLKVFESMKKNNPRRYQVAGLGEWGIVEGLVYENWEEKAFDI 253
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ + G+DFG+ P A + + S I+V + + +
Sbjct: 254 GEVKKISTIQSVFGLDFGYTNDPSALFCGLVDTKSKTIWVFDEMYKKGMSNEAIADEVTK 313
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
G + + ++ D + + + R G++ G + + GI +
Sbjct: 314 MG------YAKERIRADSAEKKSI-DRLRHLGLQ---RVTPAIKGPDSIRNGIDFIQ 360
>gi|306830667|ref|ZP_07463832.1| PBSX family phage terminase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304427175|gb|EFM30282.1| PBSX family phage terminase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 416
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 81/248 (32%), Gaps = 17/248 (6%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + + P + Y+
Sbjct: 117 SGLKRARGFTAFGAYVNEASLANEVVFKEIISRCSGDGARIVWDSNPDNPNHWLRRDYIG 176
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDI 122
++ +++ + + I + P + G+ + G I+ + +I
Sbjct: 177 KNNGKIIDFSFKLDDNTFLSPRYIASIKAATPSGKFYDRDIDGKWTVAEGAIYSDYDANI 236
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
++P G+DFG+ H + + D Y+V R + + K
Sbjct: 237 -HEVDELPRMVRYFAGVDFGYDHLGSIVIVGETSDG-KQYLVDGIAERYRVISWWTDRAK 294
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + + D E ++ ++ G+ + + V AGI + R
Sbjct: 295 EFKAK----YGNIAFWCDSARPEHVA-HFQSAGL-------DAMNANKNVIAGIETVAKR 342
Query: 243 MRSGRWKV 250
+ +
Sbjct: 343 FKENTLFI 350
>gi|303255666|ref|ZP_07341713.1| terminase large subunit [Streptococcus pneumoniae BS455]
gi|302597338|gb|EFL64437.1| terminase large subunit [Streptococcus pneumoniae BS455]
Length = 432
Score = 99.5 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/261 (18%), Positives = 76/261 (29%), Gaps = 32/261 (12%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T +E + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQ-IGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ V + + + G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYR-RQGMKML 219
IYV +K G L + R G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHRSQIIADSAELR-------LIEELRSEHGIS-- 345
Query: 220 PECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 -RIKESRKGKDSIMAGVSKLQ 365
>gi|148266781|ref|YP_001245724.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus JH9]
gi|150392825|ref|YP_001315500.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus JH1]
gi|258445244|ref|ZP_05693438.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A6300]
gi|147739850|gb|ABQ48148.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus JH9]
gi|149945277|gb|ABR51213.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus JH1]
gi|257855958|gb|EEV78879.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A6300]
Length = 402
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T + +E E +R + + + P P+ + Y+ S
Sbjct: 109 WKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKS 168
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ + + T+ + +E + II S P + G+ + G ++
Sbjct: 169 GQRLSNGRLNIKAFQFTLFDNTFLDEGYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKD 228
Query: 118 VEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E + + + G+D+G+ H + + + D + YV++ + R +
Sbjct: 229 FKEKVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRHKEI 287
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
VA K K D E + ++RR+ +K V A
Sbjct: 288 DDWVAIAKGVIKRHGDIL----FYCDTARPEHI-ERFRREKIKARY-------ADKAVIA 335
Query: 235 GISDMLDRMRSGRWKV 250
GI + + + +
Sbjct: 336 GIEVISRLFKLNKIFI 351
>gi|229182174|ref|ZP_04309457.1| hypothetical protein bcere0005_54880 [Bacillus cereus 172560W]
gi|228601276|gb|EEK58814.1| hypothetical protein bcere0005_54880 [Bacillus cereus 172560W]
Length = 377
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 87/261 (33%), Gaps = 30/261 (11%)
Query: 1 LKAYEQGRDKWQSNTV-----HYVWFDEEPPE------DVYFEGLTRINATQG---LVTL 46
+ + K +S + WF+E + + R G +
Sbjct: 61 FRGAD-DPAKIKSIKIAKYPVTIAWFEELAEFKLEEDVSTIEKSILRKELQNGLRYKMYY 119
Query: 47 TLTPL-KGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSY--PLHEREAR 102
+ P + +S + + + + + V T ++ PH ++Q + ++ + E
Sbjct: 120 SYNPPKRKQSWVNKKFETQFKPKNTFVHHSTYHDNPHISKQFVEEAEETKRLKPRQYEHE 179
Query: 103 TKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPF-AAGHLVWNRDSDVI 161
+G+P GSG + + I +I G+D+G+ + + G + +++ +
Sbjct: 180 YEGKP-TGSGVVPFSNLKFRRITDEEIKSFDNIRQGIDWGYGNDALSFGRMHYDKTRRKL 238
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
Y+ + + +K G W + D + + G+K +
Sbjct: 239 YIFGEIHGVKISNRSLAEKIKQLG------WDDVEIIADSSEPKSIDEMKNDHGIK---K 289
Query: 222 CATFDDGSNGVEAGISDMLDR 242
G VE G + D
Sbjct: 290 IKGAVKGPGSVEYGEKWLDDL 310
>gi|66396341|ref|YP_240671.1| ORF008 [Staphylococcus phage 88]
gi|66396415|ref|YP_240743.1| ORF009 [Staphylococcus phage 92]
gi|62636756|gb|AAX91867.1| ORF008 [Staphylococcus phage 88]
gi|62636829|gb|AAX91940.1| ORF009 [Staphylococcus phage 92]
Length = 421
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S + + V T P ++Q + + +E+ R +
Sbjct: 173 PKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE 232
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I + + I +DFG+ P A +++ VIY +
Sbjct: 233 AIGSGVVPFNNLRIEEIPQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Y + + LK G + D + D + ++ + + +
Sbjct: 293 YYGVQISNREFANWLKKKG------YQSDEIFADSAEPKSIAELKQEH---GIKKIKGVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G++ VE G + D
Sbjct: 344 KGADSVEFGEQWLDDL 359
>gi|328553958|gb|AEB24450.1| PBSX family phage terminase large subunit [Bacillus
amyloliquefaciens TA208]
Length = 401
Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/259 (12%), Positives = 83/259 (32%), Gaps = 28/259 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
K + T + +E + E ++R + +V + P + Y+
Sbjct: 105 SWKKARGFTSAGAFLNEATALHDSFVKEVISRCSYKGAVVMMDTNPENPMHTVKTDYIDK 164
Query: 65 SSS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFP 116
+ + ++ + + + + I+ S P + G + G I+
Sbjct: 165 DGQKLKSGRLNIRSFHFSLFDNNFLDPEYVESIVASTPSGMFTDRDINGYWVASEGVIYR 224
Query: 117 IVEEDIVINSLDIPEHWV-----QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+DI S + E+ G+D+G+ HP + + + D Y+++ + +
Sbjct: 225 DFNKDIHYISSEELENRRVNFKKYFAGVDWGYEHPGSIVVIGQD-DQGCFYLLEEHAKQH 283
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+ + V K + + + D E + + E +
Sbjct: 284 EEIDYWVKVAK----GVKERYGNINFYCDSARPEHVQ--------RFRREKLRALNADKA 331
Query: 232 VEAGISDMLDRMRSGRWKV 250
+ +GI ++ + V
Sbjct: 332 IISGIEEVARLFKRNELFV 350
>gi|294782215|ref|ZP_06747541.1| phage-associated terminase large subunit [Fusobacterium sp.
1_1_41FAA]
gi|294480856|gb|EFG28631.1| phage-associated terminase large subunit [Fusobacterium sp.
1_1_41FAA]
Length = 278
Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 64/214 (29%), Gaps = 21/214 (9%)
Query: 43 LVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR 102
+ ++ P R + + + + ++ ++K D + R +
Sbjct: 17 QIIISFNPWNERHWLKGRFFDKVDDNILALTTNYQCNEWLDDADKKLFEDMKKNNPRRYQ 76
Query: 103 T--KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIG--GMDFGWH-HPFAAGHLVWNRD 157
G + G ++ +E + + G+DFG+ P A + +++
Sbjct: 77 VAGLGNWGIVDGLVYENWQELEFDWREILNKRQKAKAVFGLDFGYTNDPAAFFCGILDQE 136
Query: 158 SDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK 217
IYV + ++ G D + + + G+
Sbjct: 137 QKEIYVFDEIYQKGMQNTAIYNNIEKLGFKKEII------VADSAEPKSI-DHLKGLGLY 189
Query: 218 MLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
G + + AGI + D +K+F
Sbjct: 190 ---RIKASKKGKDSINAGIQFIQD------FKIF 214
>gi|331269396|ref|YP_004395888.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
BKT015925]
gi|329125946|gb|AEB75891.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
BKT015925]
Length = 419
Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 22/238 (9%)
Query: 15 TVHYVWFDEEPPEDVY------FEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ Y+W++E + Y + L R + V + P + + + + D
Sbjct: 134 YIKYIWYEEVDEFEGYDKIRNINQSLMR-GGPKFCVFYSFNPPESQRNWANMEVLQTRKD 192
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDIVIN 125
+ V P EQ ++ + + G+G +
Sbjct: 193 KLVHHSNYLSVPKEWLGEQFILEAEHIKKVNPTKYEHDYLGAVTGTGGEVFTNVTIRKMT 252
Query: 126 SLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+I G+DFG+ P +++ +Y+ + V +K
Sbjct: 253 DEEIANFDRVHRGLDFGYASDPLHYTVNHYDKTRRRLYIFYEIHKAGMSNSSAVETIKQE 312
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
K ++ + D ++ +++ G+K++ G + VE G+ + D
Sbjct: 313 NK------SNNRIVADSAEPRTIAE-FKKLGLKIIGA----KKGPDSVEHGVKFLQDL 359
>gi|307289456|ref|ZP_07569407.1| phage terminase large subunit [Enterococcus faecalis TX0109]
gi|306499587|gb|EFM68953.1| phage terminase large subunit [Enterococcus faecalis TX0109]
Length = 319
Score = 98.7 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPEDVYFE------GLTRINATQG---LVTLTLTP 50
Q ++ +S W +E E L R G + P
Sbjct: 26 AQNPERIKSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNP 85
Query: 51 L-KGRSPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S+ D V T + P + + K + + + AR + +
Sbjct: 86 PKRRQSWVNKKYESSFQPDNTFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE 145
Query: 109 LGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P E I + G+DFG+ P A +++ + IY V
Sbjct: 146 AIGSGVVPFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAV 205
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + K+ G + D + D + ++ GM
Sbjct: 206 DEIYGVKISNREFAQKAKAKG------YQSDRVASDSAEPKSIAELNNEHGMS---HVFG 256
Query: 225 FDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 257 VKKGPDSVQYGEEWLDDL 274
>gi|196042482|ref|ZP_03109723.1| phage terminase, large subunit, PBSX family [Bacillus cereus
NVH0597-99]
gi|196026639|gb|EDX65305.1| phage terminase, large subunit, PBSX family [Bacillus cereus
NVH0597-99]
Length = 409
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 95/252 (37%), Gaps = 26/252 (10%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
D + T + + +E +DV+ E +R + + + P + Y+
Sbjct: 118 DTIRGMTAYGAYVNEGSLANKDVFDEIKSRCSGEGARILVDTNPDHPEHWLKVDYIDKDD 177
Query: 67 S-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEEDIVI 124
+ + + +++ N++ R+RI S P R KG G ++ +D+
Sbjct: 178 NVTIKAFQYELDDNTFLNDRYRERIKASTPTGMFYDRNIKGLWCSADGVVYKDFNKDVHY 237
Query: 125 ---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH---V 178
L + G+D+G+ H + + + D + +Y+++ + + + +
Sbjct: 238 IEETDLKDIKFTKYFAGVDWGYEHFGSIVVIGED-DEENLYLLEEHAKQHEEIDYWVGVA 296
Query: 179 AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K + + +H KR ++++G++ V +GI
Sbjct: 297 KGVKERYGNIFFYCDTARPEHIKR--------FKKEGIRARN-------ADKSVLSGIEI 341
Query: 239 MLDRMRSGRWKV 250
+ ++S ++KV
Sbjct: 342 VAKHIKSFKFKV 353
>gi|257079391|ref|ZP_05573752.1| terminase large subunit [Enterococcus faecalis JH1]
gi|256987421|gb|EEU74723.1| terminase large subunit [Enterococcus faecalis JH1]
Length = 430
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 29/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 119 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 178
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 179 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 238
Query: 109 LGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P + I G+DFG+ P A +++ + IY +
Sbjct: 239 AIGSGVVPFDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAI 298
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + KS G + D + D + ++ GM
Sbjct: 299 DEIYGVKISNREFANKAKSKG------YISDRIAADSAEPKSIAELNNEHGMS---HVFG 349
Query: 225 FDDGSNGVEAGISDMLDR 242
G + V+ G + D
Sbjct: 350 VKKGPDSVQYGEEWLDDL 367
>gi|119357402|ref|YP_912046.1| hypothetical protein Cpha266_1601 [Chlorobium phaeobacteroides DSM
266]
gi|119354751|gb|ABL65622.1| protein of unknown function DUF264 [Chlorobium phaeobacteroides DSM
266]
Length = 414
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 17/252 (6%)
Query: 8 RDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHYL 62
D + + DE ++V+ L+R+ + + LT TP +
Sbjct: 110 PDSLKGPNIGSAGIDEPFIQQKEVFDITLSRVRHPRAKHREIFLTGTPEQLNWGHEVSQN 169
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEED 121
D ++ + H Q + +Y ++R A G + L GR++ +
Sbjct: 170 DEGRYDLGLVVGRTADNVHLPGQFVSMLERAYDENQRAAYMNGLFVNLTVGRVYSYFDRS 229
Query: 122 IVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+ + + G+DF H A VW D ++ R T
Sbjct: 230 VHMGGAGLGGDGADGEVVAGIDFNVDHLTAVVLRVW---GDRVHCFDEMVLRGSTTYELA 286
Query: 179 AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
L + G + + + +G ++ V+ +
Sbjct: 287 DRLYERFPGIRVFPDPSGGARRTSAPKTDVRILQDKGFRVEMRPKQPP-----VKDRVHA 341
Query: 239 MLDRMRSGRWKV 250
+ +R GR V
Sbjct: 342 VQKLLREGRLSV 353
>gi|167770494|ref|ZP_02442547.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM
17241]
gi|167667089|gb|EDS11219.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM
17241]
Length = 418
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 22/238 (9%)
Query: 15 TVHYVWFDEEPPEDVYFEGLTRI-----NATQGLVTLTLTPLKGRSPIIEHYLSASSSDR 69
Y+WF+E D E ++ + V + P K I + + D+
Sbjct: 126 YFKYIWFEEADQYDDMEEIRKVTQSVIRSSGKPKVFYSYNPPKSVQSWINNEILIPRKDQ 185
Query: 70 QVIRMTINETP--HYNEQERKRIIDSYP--LHEREARTKGEPILGSGRIFPIVEEDIVIN 125
V T + P +Q GE + G+G I
Sbjct: 186 IVHHSTYLDVPKAWLGDQFLTEAEHLKNVKPDAYRHEYLGE-VTGTGGEVFDNIRLEEIT 244
Query: 126 SLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
I G D+G+ P A L +++ +Y+ + ++
Sbjct: 245 EEQIFRFDNIRQGNDWGYAADPAAWARLYYDKTRRCVYLFGEIYSTGLSNRRLCEEVRKR 304
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
W + D + + + G+ M G +E GI + D
Sbjct: 305 ------RWEYPASTADSAEPKSIDEC-QSYGVPMRAA----VKGPGSIETGIKFLQDL 351
>gi|240140465|ref|YP_002964944.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens
AM1]
gi|240010441|gb|ACS41667.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens
AM1]
Length = 422
Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 15/237 (6%)
Query: 16 VHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ W +E + + + I + +T P P + ++ +D +V+R
Sbjct: 112 IDVCWVEEAQTVSNASWSKLIPTIRKDGSEIWVTFNPELDTDPTYQRFVVNPPADAKVVR 171
Query: 74 MTINETPHYNEQERKRI--IDSYPLHEREARTKG-EPILGSGRIFPIVEEDIVINSLDIP 130
+ ++ P + E R+ + + +G G ++ +
Sbjct: 172 LNWSDNPWFPEVLRREKDELAARDPDAYLNVWEGATRQTLDGAVYAKEMREAAAEGRIGR 231
Query: 131 EHWVQIGGMDFGWHHPFAAGHLVW--NRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL 188
+ + + W +A +W V+ ++ V L+S G
Sbjct: 232 VQYDRTKPVHTAWDLGWADCTSIWFAQAVGGEFRVIDFLEVSQRAIPDIVKTLQSKGYVY 291
Query: 189 PWAW-PHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ PHD + +G ++ R G ++ + V GI+
Sbjct: 292 GNDYLPHDADSSTLQGNGRTIAQMMRSLGRNVIVQPRR------DVIEGINAARTLF 342
>gi|257451768|ref|ZP_05617067.1| putative phage terminase large subunit [Fusobacterium sp. 3_1_5R]
Length = 435
Score = 98.3 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 24/237 (10%)
Query: 16 VHYVWFDEEPPE------DVYFEGLTRINATQGLVT---LTLTPLKGRSPI--IEHYLSA 64
+ Y W +E ++ + + R + L L+ P K R ++ +
Sbjct: 138 IAYFWIEEAAEFLTEEEIEIVIKSVLRGKISDNLKYKGFLSYNPPKQRHHWINKKYGVIQ 197
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ + P+ +E+ + + G + P I
Sbjct: 198 KQETSFIHHSCYTDNPYLSEEFILEAEEKKKKDPVGYDWEYLGEPVGGGVVPFPRLHIGK 257
Query: 125 NSLDIPEHWVQIG-GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ G+D+G+ P A ++R IY + + +++ A+K
Sbjct: 258 IPDLLIRTLDTFRNGVDWGYAVDPVAFVRWGYDRMRKRIYAISEFYGVQKSNEVLAKAIK 317
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K D + ++ R G++ + G VE+G +
Sbjct: 318 KQIKRNETV------TCDSAEPKSVAE-LRSYGIRA----YSAKKGKGSVESGEKWL 363
>gi|299067126|emb|CBJ38322.1| putative phage terminase large subunit [Ralstonia solanacearum
CMR15]
Length = 467
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/312 (12%), Positives = 79/312 (25%), Gaps = 67/312 (21%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQG-----------LVTLTLT 49
YE+ K+Q +H + DE +Y R +
Sbjct: 107 QYEKDVIKYQGAQIHVLLIDELTHFTEKIYRYLRGRCRLGGLKIPERYRGLFPRIVCGSN 166
Query: 50 PLKGRSPIIE--------------HYLSASSSDRQVIRMTINETPHY---NEQERKRIID 92
P ++ RQ I +++ P + +
Sbjct: 167 PGGVGHNWVKASFIDIAPPKAITQMPPKEGGKRRQYIPARLDDNPSMAESDPDYADTLEG 226
Query: 93 SYPLHEREARTKGEPILGSGRIFP--IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAG 150
A G+ + +G +F V+ IP W G D+G PF+
Sbjct: 227 LGNPELVRAMKDGDWDIVAGGMFDDLWHRSTHVLAPFAIPSSWRIDRGFDWGSSKPFSVV 286
Query: 151 HLV--------------WNRDSDVIYVVKNYR--------CREQTPIFHVAALKSWGKWL 188
+ I+ + + + + + K +
Sbjct: 287 WFAESDGTAATMLDGSQRHFPRGSIFAIAEWYGWNGKPNEGCKMLAVDIAREIVKREKEM 346
Query: 189 PWAWPH---DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
P+ D D ++G ++ ++ +K + G + ++
Sbjct: 347 PYQVRPGPADTSIFDTQNGMCIADDMLKERVKWSKADKS----PGSRRNGWEMIRKLLKQ 402
Query: 246 GR------WKVF 251
R + VF
Sbjct: 403 ARDRELPGFYVF 414
>gi|261495269|ref|ZP_05991723.1| bacteriophage terminase large subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261309094|gb|EEY10343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
Length = 406
Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 73/239 (30%), Gaps = 20/239 (8%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE E + + + + + +T P S + + +I M+
Sbjct: 124 IAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPENRGSATDTRFRQNPPENSCIIEMS 183
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + EQER +G + S + + + P+
Sbjct: 184 YQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAYLEAS-EAQIFRGKYQEMEFVPNPDF 242
Query: 133 WVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
G+DFG+ P AA + +Y+ + K +P
Sbjct: 243 DGPYYGLDFGFAQDPTAAVKCWVF--NGDLYIEFEAGKVGLELDDTADFI---AKGVPQI 297
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
H ++ D E +S +R G+ P D VE GI + G+ +
Sbjct: 298 ADH-VVRADSARPESIS-YLKRHGL---PRIIGVDKWKGSVEDGIEHIKSY---GKVFI 348
>gi|149915264|ref|ZP_01903792.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
gi|149810985|gb|EDM70824.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
Length = 468
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 82/284 (28%), Gaps = 45/284 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDV---YFEGLTRINATQGLVTLTLTPL---KGRSP 56
+ R K++ +Y+ FDE P DV Y R + T G+
Sbjct: 120 DADRLKYRGRAWNYIGFDELTLWPTDVCYLYLFSRCRSTDQTLPRYIRATTNPDGPGQLW 179
Query: 57 IIEHYLSASSS--------------------DRQVIRMTINETPHYNEQERKRIIDSYPL 96
+++ + R I ++E PH +E + +
Sbjct: 180 VMKRWGIQEDGSATRIPVDVEDKEKGVTTTFHRTFIPARLSENPHLSETGYREALLQLAP 239
Query: 97 HEREARTKGEP--ILGSGRIFPIVEEDIVI----NSLDIPEHWVQIGGMDFGWHHPFAAG 150
ER+A G G + ++ S+ D GW+ A
Sbjct: 240 DERDALLMGLWRQGRVHGAYYANEMAEMRNRGGIRSVPYDPSEPVNTFWDLGWNDTTAIW 299
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL---PWAWPHDGLQHDKRSGEQL 207
+ + ++ Y ++ + L++ G L PHD ++G+
Sbjct: 300 F--HQQIAGEHRFIRAYENSGESLDHYATYLQNSGFNLMGGRHYLPHDARNKSLQTGKSA 357
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + + GI+ M R KVF
Sbjct: 358 LEILQEMLPNL---NFEVVPRIQNILTGINQTRLAM---RGKVF 395
>gi|149915036|ref|ZP_01903565.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
gi|149811224|gb|EDM71061.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
Length = 468
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 82/284 (28%), Gaps = 45/284 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDV---YFEGLTRINATQGLVTLTLTPL---KGRSP 56
+ R K++ +Y+ FDE P DV Y R + T G+
Sbjct: 120 DADRLKYRGRAWNYIGFDELTLWPTDVCYLYLFSRCRSTDQTLPRYIRATTNPDGPGQLW 179
Query: 57 IIEHYLSASSS--------------------DRQVIRMTINETPHYNEQERKRIIDSYPL 96
+++ + R I ++E PH +E + +
Sbjct: 180 VMKRWGIQEDGSATRIPVDVEDKEKGVTTTFHRTFIPARLSENPHLSETGYREALLQLAP 239
Query: 97 HEREARTKGEP--ILGSGRIFPIVEEDIVI----NSLDIPEHWVQIGGMDFGWHHPFAAG 150
ER+A G G + ++ S+ D GW+ A
Sbjct: 240 DERDALLMGLWRQGRVHGAYYANEMAEMRNRGGIRSVPYDPSEPVNTFWDLGWNDTTAIW 299
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL---PWAWPHDGLQHDKRSGEQL 207
+ + ++ Y ++ + L++ G L PHD ++G+
Sbjct: 300 F--HQQIAGEHRFIRAYENSGESLDHYATYLQNSGFNLMGGRHYLPHDARNKSLQTGKSA 357
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + + GI+ M R KVF
Sbjct: 358 LEILQEMLPNL---NFEVVPRIQNILTGINQTRLAM---RGKVF 395
>gi|66395973|ref|YP_240307.1| ORF008 [Staphylococcus phage ROSA]
gi|62636393|gb|AAX91504.1| ORF008 [Staphylococcus phage ROSA]
Length = 421
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 75/256 (29%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S + + V T P ++Q + + +E+ R +
Sbjct: 173 PKRKQSWVNKKYESSFQADNTFVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE 232
Query: 109 LGSGRIFPIVEEDIVINSL-DIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I +DFG+ P A +++ VIY +
Sbjct: 233 AIGSGVVPFNNLRIEEIPQGQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + + +
Sbjct: 293 HYGVQISNREFANWLKKKG------YQSDEIFADSAEPKSIAELKQEH---GIKKVKAVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G++ VE G + D
Sbjct: 344 KGADSVEYGEQWLDDL 359
>gi|316933861|ref|YP_004108843.1| bacteriophage terminase large subunit-like protein
[Rhodopseudomonas palustris DX-1]
gi|315601575|gb|ADU44110.1| bacteriophage terminase large subunit-like protein
[Rhodopseudomonas palustris DX-1]
Length = 504
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/298 (15%), Positives = 80/298 (26%), Gaps = 60/298 (20%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQG-----------LVTLTLTPL 51
E+ R K+Q +H + DE +Y R+ + P
Sbjct: 118 ERHRFKYQGAEIHVLLIDELTHFTEVIYRFLRNRVRMVGITLPAQYVGKFPRIICGANPG 177
Query: 52 KGRSPIIEHYLSASSSD--------------RQVIRMTINETPHYNEQE---RKRIIDSY 94
++ RQ I + + P EQ+ R+
Sbjct: 178 HIGHQFVKATFIDGVKPLAIYRAANDEGGMLRQYIPARLEDNPSMAEQDPGYEARLCGLG 237
Query: 95 PLHEREARTKGEPILGSGRIFPIVEED-IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153
A G+ + G F + VI IP+ W++ D+G PF+ G
Sbjct: 238 SEALVRAMRDGDWDIIEGAFFDCFDRKRHVIKPFTIPKRWLRFRAGDWGSAKPFSFGWYC 297
Query: 154 WNRD-----------SDVIYVVKNYRCR--------------EQTPIFHVAALKSWGKWL 188
D + + + + + ++
Sbjct: 298 VVEDDFLTPCGRLLPRGCLIRYREWYGVKTDAQGKFKPNVGLKMSNDAMGRGVRLRDYDD 357
Query: 189 PWAWPH-DGLQHDKRSGEQLSAQYRR--QGMKMLPECATFDDGSNGVEAGISDMLDRM 243
A+ D G ++ Q + +G P T G + G S M DRM
Sbjct: 358 RIAYGKLDPACFANDGGPSIAEQMQAGGKGASFTPADNTRVAGRGAI-GGWSQMRDRM 414
>gi|66396048|ref|YP_240381.1| ORF008 [Staphylococcus phage 71]
gi|62636467|gb|AAX91578.1| ORF008 [Staphylococcus phage 71]
Length = 421
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 75/256 (29%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSVAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S + + V T P ++Q + + +E+ R +
Sbjct: 173 PKRKQSWVNKKYESSFQADNTFVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE 232
Query: 109 LGSGRIFPIVEEDIVINSL-DIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I +DFG+ P A +++ VIY +
Sbjct: 233 AIGSGVVPFNNLRIEEIPQGQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + + +
Sbjct: 293 HYGVQISNREFANWLKKKG------YQSDEIFADSAEPKSIAELKQEH---GIKKVKAVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G++ VE G + D
Sbjct: 344 KGADSVEYGEQWLDDL 359
>gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45]
gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45]
Length = 485
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 89/276 (32%), Gaps = 37/276 (13%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE 59
K+ ++ D + T+ +V DE P V+ E + + + L ++ KG + E
Sbjct: 130 KSADR-PDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGWALIISTPKGLNWFYE 188
Query: 60 HYLS----------------ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART 103
+L + D + + + P E
Sbjct: 189 FFLMGWRGGLKEGIPNSGVNQTHPDFESFHAASWDVWPERREWYMERRLYIPDLEFRQEY 248
Query: 104 KGEPILGSGRIFPIVEEDIVINS---------LDIPEHWVQIGGMDFGWHHPFAAGHLVW 154
E + S +F ++ I++ D + G DFG + ++ V
Sbjct: 249 GAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSV-FSVL 307
Query: 155 NRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
+ D+ I ++ R T VA LK+ + A+ G+ ++ + Q
Sbjct: 308 DLDTGAIVCLE--RMNGATWSDQVARLKALSEDYGHAYVVADTW---GVGDAIAEELDAQ 362
Query: 215 GMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
G+ P E IS++ M G+ V
Sbjct: 363 GINYTPLPVKSSSVK---EQLISNLALLMEKGQVAV 395
>gi|317058325|ref|ZP_07922810.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313684001|gb|EFS20836.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 423
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 24/237 (10%)
Query: 16 VHYVWFDEEPPE------DVYFEGLTRINATQGLVT---LTLTPLKGRSPI--IEHYLSA 64
+ Y W +E ++ + + R + L L+ P K R ++ +
Sbjct: 126 IAYFWIEEAAEFLTEEEIEIVIKSVLRGKISDNLKYKGFLSYNPPKQRHHWINKKYGVIQ 185
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ + P+ +E+ + + G + P I
Sbjct: 186 KQETSFIHHSCYTDNPYLSEEFILEAEEKKKKDPVGYDWEYLGEPVGGGVVPFPRLHIGK 245
Query: 125 NSLDIPEHWVQIG-GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ G+D+G+ P A ++R IY + + +++ A+K
Sbjct: 246 IPDLLIRTLDTFRNGVDWGYAVDPVAFVRWGYDRMRKRIYAISEFYGVQKSNEVLAKAIK 305
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K D + ++ R G++ + G VE+G +
Sbjct: 306 KQIKRNETV------TCDSAEPKSVAE-LRSYGIRA----YSAKKGKGSVESGEKWL 351
>gi|253731492|ref|ZP_04865657.1| pbsx family phage terminase, large subunit [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253724735|gb|EES93464.1| pbsx family phage terminase, large subunit [Staphylococcus aureus
subsp. aureus USA300_TCH959]
Length = 407
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + T + +E E+V+ E +R + T + + P +++ Y+
Sbjct: 116 SGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIE 175
Query: 64 ASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + +++ N++ ++ I S P R G + G G ++ +
Sbjct: 176 NTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + LD G+D+G+ H + + D + Y ++ + + +
Sbjct: 236 NENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDW 294
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V K + + + D E ++ + +G+
Sbjct: 295 VVIAK----DIVSRYGNINFYCDTARPEYITE--------FRRHRLRAINADKSKLSGVE 342
Query: 238 DMLDRMRSGRWKV 250
++ + + V
Sbjct: 343 EVAKLFKQNKLLV 355
>gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26]
gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26]
Length = 485
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 89/276 (32%), Gaps = 37/276 (13%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE 59
K+ ++ D + T+ +V DE P V+ E + + + L ++ KG + E
Sbjct: 130 KSADR-PDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGWALIISTPKGLNWFYE 188
Query: 60 HYLS----------------ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART 103
+L + D + + + P E
Sbjct: 189 FFLMGWRGGLKEGIPNSGINQTHPDFESFHAASWDVWPERREWYMERRLYIPDLEFRQEY 248
Query: 104 KGEPILGSGRIFPIVEEDIVINS---------LDIPEHWVQIGGMDFGWHHPFAAGHLVW 154
E + S +F ++ I++ D + G DFG + ++ V
Sbjct: 249 GAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSV-FSVL 307
Query: 155 NRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
+ D+ I ++ R T VA LK+ + A+ G+ ++ + Q
Sbjct: 308 DLDTGAIVCLE--RMNGATWSDQVARLKALSEDYGHAYVVADTW---GVGDAIAEELDAQ 362
Query: 215 GMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
G+ P E IS++ M G+ V
Sbjct: 363 GINYTPLPVKSSSVK---EQLISNLALLMEKGQVAV 395
>gi|307128279|ref|YP_003880310.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B]
gi|306485341|gb|ADM92210.1| phage terminase, large subunit, pbsx family [Streptococcus
pneumoniae 670-6B]
gi|321157268|emb|CBW39251.1| Phage terminase large subunit [Streptococcus phage 2167]
Length = 432
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 75/260 (28%), Gaps = 30/260 (11%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQ---GLVTL 46
+ + K S TV + WF+E E E + +T+
Sbjct: 116 FRGLD-DELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITV 174
Query: 47 TLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART- 103
T P R + + +D T + + KR D Y + R AR
Sbjct: 175 TFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDGVDIKRYEDLYHTNPRRARIV 234
Query: 104 -KGEPILGSGRIFPI-VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160
GE + G I+ +D + L G+DFG+ P A + N +
Sbjct: 235 CDGEWGVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDFGFTHDPTALCCSLINDTTKE 294
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
IYV +K G + D + G+
Sbjct: 295 IYVFDEAYKVGLITKEVAKMIKDKGYHR------SQIIADSAESRLIEELRSEHGIS--- 345
Query: 221 ECATFDDGSNGVEAGISDML 240
G + + AG+S +
Sbjct: 346 RIKESRKGKDSIMAGVSKLQ 365
>gi|289167314|ref|YP_003445583.1| terminase large subunit [Streptococcus mitis B6]
gi|288906881|emb|CBJ21715.1| terminase large subunit [Streptococcus mitis B6]
Length = 418
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 111 AQDPERIKSLKDSRFPFAIGWIEELAEFKTEDEVKTITNSLLRGELDDGLFYKFFYSYNP 170
Query: 51 L-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S + V T + P+ ++ + + E+ R +
Sbjct: 171 PKRKQSWVNKKYESVIQPPNTHVHHSTYLDNPYISQAFIEEAEATRERSEKRYRWEYLGE 230
Query: 109 L-GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
GSG I +I G DFG+ P A +++ VIY +
Sbjct: 231 AIGSGVAPFENLVFRKITDEEIARFDNIRQGNDFGYANDPLAFVRWHYDKKKRVIYAIDE 290
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + ++ G D + + + +P
Sbjct: 291 IYGVKISNRELAERIREKGYQSQMI------TCDSAEPKSIDELKLQL---NIPLVQGAK 341
Query: 227 DGSNGVEAGISDMLDR 242
G + E G + D
Sbjct: 342 KGPDSREYGERWLDDL 357
>gi|255103025|ref|ZP_05332002.1| phage terminase, large subunit, pbsx family protein [Clostridium
difficile QCD-63q42]
Length = 413
Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 26/237 (10%)
Query: 19 VWFDEEPPED--VYFEGLTRINATQG---LVTLTLTPLKGRSPIIEHYL--------SAS 65
+W +E D + R+ +TL+ P+ + Y
Sbjct: 130 IWVEEATETDYKAVKQLDKRLRGKSKVVKRLTLSFNPILKDHWLYTEYFDIWEDDKQYVE 189
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ +++ T + E + K + + + E T G + IF + +
Sbjct: 190 KDNVSILKTTYKDNKFLAEDDIKALENESDKYYYEVYTLGNWGVLGAVIFKNWRVEDFSD 249
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+++ F PFA ++R +Y+ +
Sbjct: 250 IESTFDNFRHGIDWGFA-DDPFAYVKSHYDRMRRKLYICDEIEAVGLLNREAAPLVSKKA 308
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
D + D S + ++ + + G+ +E GI +
Sbjct: 309 NG-------DLVICDNASPKDVAEF-----SDLRINAVSARKGAGSIEYGIKFLQGL 353
>gi|257463372|ref|ZP_05627768.1| putative phage terminase large subunit [Fusobacterium sp. D12]
Length = 435
Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 24/237 (10%)
Query: 16 VHYVWFDEEPPE------DVYFEGLTRINATQGLVT---LTLTPLKGRSPI--IEHYLSA 64
+ Y W +E ++ + + R + L L+ P K R ++ +
Sbjct: 138 IAYFWIEEAAEFLTEEEIEIVIKSVLRGKISDNLKYKGFLSYNPPKQRHHWINKKYGVIQ 197
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ + P+ +E+ + + G + P I
Sbjct: 198 KQETSFIHHSCYTDNPYLSEEFILEAEEKKKKDPVGYDWEYLGEPVGGGVVPFPRLHIGK 257
Query: 125 NSLDIPEHWVQIG-GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ G+D+G+ P A ++R IY + + +++ A+K
Sbjct: 258 IPDSLIRTLDTFRNGVDWGYAVDPVAFVRWGYDRMRKRIYAISEFYGVQKSNEVLAKAIK 317
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K D + ++ R G++ + G VE+G +
Sbjct: 318 KQIKRNETV------TCDSAEPKSVAD-LRSYGIRA----YSAKKGKGSVESGEKWL 363
>gi|149914795|ref|ZP_01903325.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
gi|149811588|gb|EDM71423.1| Phage terminase, large subunit, PBSX [Roseobacter sp. AzwK-3b]
Length = 467
Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/284 (15%), Positives = 83/284 (29%), Gaps = 45/284 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDV---YFEGLTRINATQGLVTLTLTPL---KGRSP 56
+ R K++ +Y+ FDE P DV Y R + T G+
Sbjct: 119 DADRLKYRGRAWNYIGFDELTLWPTDVCYLYLFSRCRSTDPTLPRLIRATTNPDGPGQGW 178
Query: 57 IIEHYLSASS--------------------SDRQVIRMTINETPHYNEQERKRIIDSYPL 96
++E + S R I ++E PH +E + +
Sbjct: 179 VMERWGIKEDGQATRVPIDTVDAEMRRITTSYRTFIPARLSENPHLSETGYREALLQLAP 238
Query: 97 HEREARTKGEP--ILGSGRIFPIVEEDIVI----NSLDIPEHWVQIGGMDFGWHHPFAAG 150
ER+A G G + ++ S+ D GW+ A
Sbjct: 239 DERDALLMGLWRQGRVHGAYYANEMAEMRNRGGIRSVPYDPSEPVNSFWDLGWNDTTAIW 298
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL---PWAWPHDGLQHDKRSGEQL 207
+ + ++ Y ++ + L++ G + PHD ++G+
Sbjct: 299 F--HQQIAGEHRFIRAYENSGESLDHYATYLQNSGFNVMGGRHFLPHDAQNKSLQTGKSA 356
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + + GI+ M R KVF
Sbjct: 357 LELLQEMLPNL---HFEVVPRIQNILIGINQTRLAM---RGKVF 394
>gi|229187826|ref|ZP_04314951.1| Phage terminase, large subunit, pbsx [Bacillus cereus BGSC 6E1]
gi|228595661|gb|EEK53356.1| Phage terminase, large subunit, pbsx [Bacillus cereus BGSC 6E1]
Length = 404
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 20/248 (8%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
D + T + + +E +DV+ E +R + + + P + Y+
Sbjct: 116 DTIRGMTAYGAYVNEGSLANKDVFDEIKSRCSGEGARILVDTNPDHPEHWLKVDYIDKDD 175
Query: 67 S-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVEEDIVI 124
S + + +++ N++ R+RI S P R KG G ++ +D+
Sbjct: 176 SVTIKAFQYELDDNTFLNDRYRERIKASTPTGMFYDRNIKGLWCSADGVVYKDFNKDVHY 235
Query: 125 ---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
L + G+D+G+ H + + + D + +Y+++ + + + + V
Sbjct: 236 IEETDLKDIKFTKYFAGVDWGYEHFGSIVVIGED-DEENLYLLEEHAKQHEEIDYWVGVA 294
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
K + + + D E + + E + V +GI ++
Sbjct: 295 K----DVKSRYGNIFFYCDTARPEHIK--------RFKKEGIKARNADKSVLSGIEEVAK 342
Query: 242 RMRSGRWK 249
++S ++K
Sbjct: 343 HIKSFKFK 350
>gi|116629265|ref|YP_814437.1| Phage terminase large subunit [Lactobacillus gasseri ATCC 33323]
gi|116629325|ref|YP_814497.1| Phage terminase large subunit, ATPase [Lactobacillus gasseri ATCC
33323]
gi|116094847|gb|ABJ59999.1| Phage terminase large subunit [Lactobacillus gasseri ATCC 33323]
gi|116094907|gb|ABJ60059.1| Phage terminase large subunit, ATPase [Lactobacillus gasseri ATCC
33323]
Length = 414
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/252 (13%), Positives = 83/252 (32%), Gaps = 19/252 (7%)
Query: 6 QGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+G + T + DE + V+ E + R + + +T P + I Y+
Sbjct: 122 RGIGSIRGATAYGALIDEGTLADQGVFQEIINRCSIEGARIVVTSNPDAPTNFIKTEYID 181
Query: 64 ASSSD--RQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIF-PIVE 119
+V TI + ++ ++ + P + G+ + G+IF
Sbjct: 182 NHDPKARIKVFNFTIFDNTFLSKDYVDALVAATPSGMYTDRTIYGKWVSAEGQIFSDFNI 241
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPF-AAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
E + I + +PE +D+G+ L + ++ Y++K + + + +
Sbjct: 242 ETMTITTDQLPEMVKYYASIDWGFGKGHKGVIQLFGDDENGTSYLIKEWAHEHRFIDYWI 301
Query: 179 AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
K + D + Q + G+ + V +G+
Sbjct: 302 DVAKEIKQKYGNIV----FWADSARVD-YVNQMQANGINCINANKN-------VLSGLEF 349
Query: 239 MLDRMRSGRWKV 250
+ + G+ +
Sbjct: 350 VDSYFKQGKLII 361
>gi|283770989|ref|ZP_06343880.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
H19]
gi|283459583|gb|EFC06674.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
H19]
Length = 407
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + T + +E E+V+ E +R + T + + P +++ Y+
Sbjct: 116 SGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIE 175
Query: 64 ASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + +++ N++ ++ I S P R G + G G ++ +
Sbjct: 176 NTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + LD G+D+G+ H + + D + Y ++ + + +
Sbjct: 236 NENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDW 294
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V K + + + D E ++ + +G+
Sbjct: 295 VDIAK----DVVSRYGNINFYCDTARPEYITE--------FRRHRLRAINADKSKLSGVE 342
Query: 238 DMLDRMRSGRWKV 250
++ + + V
Sbjct: 343 EVAKLFKQNKLLV 355
>gi|134095464|ref|YP_001100539.1| putative terminase, large subunit [Herminiimonas arsenicoxydans]
gi|133739367|emb|CAL62417.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 437
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 85/295 (28%), Gaps = 49/295 (16%)
Query: 1 LKAYEQGRD---KWQSNTVHYVWFDEEPPE---DVYFEGLTRINATQGLV----TLTLTP 50
Y + D + + + ++E + + ++ + T P
Sbjct: 78 FFRYGESEDDYWNYHGHEYPWQGYEELTNWRDPTFFEAMASTCRSSFPGMPRRRRATCNP 137
Query: 51 LKGRSPIIEHYLSASSSD--------------RQVIRMTINETPHY---NEQERKRIIDS 93
++ + R IR +I+E H + K +
Sbjct: 138 FGRGHGWVKERYDLGTGGTPSGQVIRLEGEQPRVRIRSSIHENTHLLESDPDYLKTLEAL 197
Query: 94 YPLHEREARTKGEPILGSGRIF--PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGH 151
+ R A +G+ + G F + +++ IP W MD+G+ P+
Sbjct: 198 KDPNRRRAWLEGDWDIHVGSFFEGVWDAKRHIVDPFPIPASWQVWKAMDWGFAAPYCVLW 257
Query: 152 LVWNRDSDVIYVVKNYRCREQT--------PIFHVAALK-------SWGKWLPWAWPHDG 196
L + D IYV + + ++ G
Sbjct: 258 LAMDPDG-CIYVWRELYGAGEKVGEGSREHADVVAKKVRTIEERDERLGYEYRMNLADPS 316
Query: 197 LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + + A +R+ G+K + + G +++ M + K+F
Sbjct: 317 IFSNTGVNTTIGAIFRKAGVKWQEAW----NAKGSIANGAQEIMRLMGDDKLKIF 367
>gi|66395894|ref|YP_240228.1| ORF009 [Staphylococcus phage 96]
gi|122891825|ref|YP_001004370.1| large terminase [Staphylococcus phage phiETA3]
gi|151220501|ref|YP_001331323.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. Newman]
gi|253314583|ref|ZP_04837796.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|257433214|ref|ZP_05609572.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
E1410]
gi|258424424|ref|ZP_05687304.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9635]
gi|258446379|ref|ZP_05694536.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A6300]
gi|284024200|ref|ZP_06378598.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
132]
gi|62636315|gb|AAX91426.1| ORF009 [Staphylococcus phage 96]
gi|104641959|gb|ABF73267.1| phage terminase [Staphylococcus aureus phage phiNM4]
gi|121309304|dbj|BAF43925.1| large terminase [Staphylococcus phage phiETA3]
gi|150373301|dbj|BAF66561.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
str. Newman]
gi|257281307|gb|EEV11444.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
E1410]
gi|257845437|gb|EEV69471.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A9635]
gi|257854829|gb|EEV77775.1| PBSX family phage terminase, large subunit [Staphylococcus aureus
A6300]
Length = 407
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + T + +E E+V+ E +R + T + + P +++ Y+
Sbjct: 116 SGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIE 175
Query: 64 ASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + +++ N++ ++ I S P R G + G G ++ +
Sbjct: 176 NTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + LD G+D+G+ H + + D + Y ++ + + +
Sbjct: 236 NENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDW 294
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V K + + + D E ++ + +G+
Sbjct: 295 VVIAK----DIVSRYGNINFYCDTARPEYITE--------FRRHRLRAINADKSKLSGVE 342
Query: 238 DMLDRMRSGRWKV 250
++ + + V
Sbjct: 343 EVAKLFKQNKLLV 355
>gi|291335422|gb|ADD95035.1| phage terminase large subunit [uncultured phage MedDCM-OCT-S04-C26]
Length = 446
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 76/258 (29%), Gaps = 21/258 (8%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRS 55
+++E + + +V DE + + L R+ A + +G
Sbjct: 132 RSFE-NWSRIIGLNLSHVLVDEIDVVSPVIADKAFPKILGRLRAGNVRQFCAASTPEGFR 190
Query: 56 PIIEHYLSASSS---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI--LG 110
+ + + + DR++I+M + PH +R+ +Y +A GE I
Sbjct: 191 WLYNTFGTDEAKERTDRELIKMRTQDNPHLPSDFIERMQANYDPSMLQAYLNGEFINLTT 250
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
E+ + N G+DF + A +V + + +
Sbjct: 251 GQVYDRFTRENNMTNIKPDIGLEPLRVGLDFNIGNMNAVIGIVQD---QKLLIFDEISGS 307
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHD-GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
T + + +P G + + G +
Sbjct: 308 HDTDSLAQTIKSRYPMNKIYVYPDASGGNRSTNASQTDIQILESYGFSNQSPRSNPP--- 364
Query: 230 NGVEAGISDMLDRMRSGR 247
V +S + + +G+
Sbjct: 365 --VRDRVSAVQALLCNGK 380
>gi|297590111|ref|ZP_06948751.1| PBSX family phage terminase [Staphylococcus aureus subsp. aureus
MN8]
gi|297577239|gb|EFH95953.1| PBSX family phage terminase [Staphylococcus aureus subsp. aureus
MN8]
Length = 407
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + T + +E E+V+ E +R + T + + P +++ Y+
Sbjct: 116 SGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIE 175
Query: 64 ASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + +++ N++ ++ I S P R G + G G ++ +
Sbjct: 176 NTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + LD G+D+G+ H + + D + Y ++ + + +
Sbjct: 236 NENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDW 294
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V K + + + D E ++ + +G+
Sbjct: 295 VDIAK----DVVSRYGNINFYCDTARPEYITE--------FRRHRLRAINADKSKLSGVE 342
Query: 238 DMLDRMRSGRWKV 250
++ + + V
Sbjct: 343 EVAKLFKQNKLLV 355
>gi|293411885|ref|ZP_06654610.1| predicted protein [Escherichia coli B354]
gi|220980013|emb|CAP72205.1| Hypothetical protein [Escherichia coli LF82]
gi|291469440|gb|EFF11929.1| predicted protein [Escherichia coli B354]
gi|323934319|gb|EGB30739.1| PBSX family protein phage terminase [Escherichia coli E1520]
Length = 418
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/255 (11%), Positives = 71/255 (27%), Gaps = 14/255 (5%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS-- 63
D + +H+V DE + D +++ L ++ L + KG S + +
Sbjct: 110 PDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQ 169
Query: 64 ----ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ + ++P E + + SGR++ +
Sbjct: 170 NVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFD 229
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
++ + L G DF + + + + ++ +
Sbjct: 230 RNVHVKPLQFNPRLPIWVGQDFNIDPMSSVI--LQPQPNGELWAIDELVLFSSNTAEVCD 287
Query: 180 ALK----SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W + G GE ++ +G + ++ V A
Sbjct: 288 ELERRFWRWKSQITVFPDPAGAYRQHARGESDVDIFKEKGFLRVDYSKKHPPIADRVNAV 347
Query: 236 ISDMLDRMRSGRWKV 250
++ R +
Sbjct: 348 NRMLMTASGDIRLYI 362
>gi|312868635|ref|ZP_07728829.1| phage terminase, large subunit, PBSX family [Lactobacillus oris
PB013-T2-3]
gi|311095844|gb|EFQ54094.1| phage terminase, large subunit, PBSX family [Lactobacillus oris
PB013-T2-3]
Length = 409
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/245 (13%), Positives = 83/245 (33%), Gaps = 18/245 (7%)
Query: 12 QSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDR 69
+ T + + +E + V+ E L+R + V P + + + Y+ D
Sbjct: 121 RGFTAYGAYVNEASLANQKVFSEILSRCSKAGSHVICDTNPDNPQHWLKKDYIDNDDPDD 180
Query: 70 QVIR--MTINETPHYNEQERKRIIDSYP-LHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ + T+++ K+ P + G + G G ++ ++ +I +
Sbjct: 181 KTVTFCFTMDDNTFLAPDYVKQKKAQTPTGMFYDREILGLWVSGDGIVYRDFDQRAMIIN 240
Query: 127 LDIPEHW-VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+ G+D+G+ H + D + IY+++ + + + + V K
Sbjct: 241 QEQLPDGLHIYCGVDWGFEHKGVITVWGDDEDGN-IYMLEEHTSQYKYIDYWVRVAKDIQ 299
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
K + D + +S + AG+ + + M+
Sbjct: 300 KRYGYNIN---FWVDSARPDNVSE--------FQRNDINAINADKSRMAGVERVAEFMKL 348
Query: 246 GRWKV 250
G++ V
Sbjct: 349 GKFFV 353
>gi|317060942|ref|ZP_07925427.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313686618|gb|EFS23453.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 423
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 24/237 (10%)
Query: 16 VHYVWFDEEPPE------DVYFEGLTRINATQGLVT---LTLTPLKGRSPI--IEHYLSA 64
+ Y W +E ++ + + R + L L+ P K R ++ +
Sbjct: 126 IAYFWIEEAAEFLTEEEIEIVIKSVLRGKISDNLKYKGFLSYNPPKQRHHWINKKYGVIQ 185
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ + P+ +E+ + + G + P I
Sbjct: 186 KQETSFIHHSCYTDNPYLSEEFILEAEEKKKKDPVGYDWEYLGEPVGGGVVPFPRLHIGK 245
Query: 125 NSLDIPEHWVQIG-GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ G+D+G+ P A ++R IY + + +++ A+K
Sbjct: 246 IPDSLIRTLDTFRNGVDWGYAVDPVAFVRWGYDRMRKRIYAISEFYGVQKSNEVLAKAIK 305
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K D + ++ R G++ + G VE+G +
Sbjct: 306 KQIKRNETV------TCDSAEPKSVAD-LRSYGIRA----YSAKKGKGSVESGEKWL 351
>gi|295407505|ref|ZP_06817299.1| PBSX family phage terminase [Staphylococcus aureus A8819]
gi|297246664|ref|ZP_06930491.1| PBSX family phage terminase [Staphylococcus aureus A8796]
gi|294967614|gb|EFG43649.1| PBSX family phage terminase [Staphylococcus aureus A8819]
gi|297176476|gb|EFH35744.1| PBSX family phage terminase [Staphylococcus aureus A8796]
Length = 407
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + T + +E E+V+ E +R + T + + P +++ Y+
Sbjct: 116 SGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIE 175
Query: 64 ASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + +++ N++ ++ I S P R G + G G ++ +
Sbjct: 176 NTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + LD G+D+G+ H + + D + Y ++ + + +
Sbjct: 236 NENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDW 294
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V K + + + D E ++ + +G+
Sbjct: 295 VVIAK----DIVSRYGNINFYCDTARPEYITE--------FRRHRLRAINADKSKLSGVE 342
Query: 238 DMLDRMRSGRWKV 250
++ + + V
Sbjct: 343 EVAKLFKQNKLLV 355
>gi|317486764|ref|ZP_07945580.1| terminase-like family protein [Bilophila wadsworthia 3_1_6]
gi|316921927|gb|EFV43197.1| terminase-like family protein [Bilophila wadsworthia 3_1_6]
Length = 463
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/303 (14%), Positives = 85/303 (28%), Gaps = 65/303 (21%)
Query: 7 GRDKWQSNTVHYVWFDEE---PPEDVYFEGLT--RINATQGL--VTLTLTPLKGRSPIIE 59
+ +Q + +V FDE P ++VY + R + + T PL ++
Sbjct: 115 DMENYQGHEYPFVGFDELCNLPSQEVYEKAKGFCRSSDPNVPKMIRCTANPLGPGHLWVK 174
Query: 60 HYLSASSS-----------DRQVIRMTINETPHY---NEQERKRIIDSYPLHEREARTKG 105
Y + R I TI + + + +R+ R A G
Sbjct: 175 RYFIDPAPALTPIVESHGGKRVFIPATIYDNKNLVEADPDYLRRLESIADDSLRRAWLNG 234
Query: 106 EPILGSGRIF--PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN-------- 155
+ + +G F ++ +IP +W D+G HPF+ G
Sbjct: 235 DWNVVAGSFFGDVWSASRNIVKPFNIPRNWYCFRSFDWGSSHPFSVGWWAIADGTQAPDG 294
Query: 156 --RDSDVIYVVKNYRCRE--------------QTPIFHVAALKSWGKWLPWAW------- 192
+ + + ++ + + A
Sbjct: 295 RYYPRGAFIRFAEWYGAKRGSNGMVVPNEGLRMSSKHVAQGIRERERKMSDAMGIRINPG 354
Query: 193 PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM----RSGRW 248
P D + G ++ +G+K + N G M +R+
Sbjct: 355 PADPAIYASTDGPSVADNMASEGIKWVR-------ADNSRVTGWQQMRERIWQEGEEPML 407
Query: 249 KVF 251
VF
Sbjct: 408 YVF 410
>gi|22855048|ref|NP_690654.1| hypothetical protein SPP1p003 [Bacillus phage SPP1]
gi|1729903|sp|P54308|TERL_BPSPP RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein G2P; AltName: Full=Terminase large subunit
gi|15466|emb|CAA39537.1| terminase [Bacillus phage SPP1]
gi|2764840|emb|CAA66573.1| unnamed protein product [Bacillus phage SPP1]
Length = 422
Score = 96.8 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 75/242 (30%), Gaps = 24/242 (9%)
Query: 16 VHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTL----TPLKGRSPIIEHYLSAS 65
V +W +E V + + R G + P + +S + + + S+
Sbjct: 128 VAGMWIEELAEFKTEEEVSVIEKSVLRAELPPGCRYIFFYSYNPPKRKQSWVNKVFNSSF 187
Query: 66 SS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE---ED 121
+ V T + P ++ + + +E + R + + P E+
Sbjct: 188 LPANTFVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHEYLGEALGSGVVPFENLQIEE 247
Query: 122 IVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I ++ G+DFG+ P A +++ + IY + + +
Sbjct: 248 GIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDKRKNRIYAIDELVDHKVSLKRTADF 307
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ + + D + A G+ G + VE G +
Sbjct: 308 VRKNK------YESARIIADSSEPRSIDALKLEHGIN---RIEGAKKGPDSVEHGERWLD 358
Query: 241 DR 242
+
Sbjct: 359 EL 360
>gi|82702592|ref|YP_412158.1| Phage terminase, large subunit, PBSX [Nitrosospira multiformis ATCC
25196]
gi|82410657|gb|ABB74766.1| Phage terminase, large subunit, PBSX [Nitrosospira multiformis ATCC
25196]
Length = 417
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/243 (13%), Positives = 75/243 (30%), Gaps = 20/243 (8%)
Query: 9 DKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
++ V VW +E + + I + +T P + ++
Sbjct: 110 KSFEG--VDRVWVEEAQTVSKTSWDTLIPTIRKEGSEIWVTYNPELNTDETHQRFVVNPP 167
Query: 67 SDRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGE-PILGSGRIFPIV----E 119
+ V+++ N+ P + E R+ + + + +G + G ++ +
Sbjct: 168 AGAVVVKINWNDNPWFPEILRREKDGLKARDPDAYQNVWEGNCRVTLEGAVYAKELRLAQ 227
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ I S+ E D GW + + + ++ Y + ++
Sbjct: 228 EEGRIRSVPYDEAKPVHTFFDLGWADNTSIWFA--QTVGNELRLIDYYSNSQMPIQHYIG 285
Query: 180 ALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
L++ G W PHD +G + G K+ + GI+
Sbjct: 286 VLQNKGYMYGTDWLPHDARARTLATGRSVEEIMLAAGRKVRIVPNL------SIHDGINA 339
Query: 239 MLD 241
Sbjct: 340 ART 342
>gi|304440418|ref|ZP_07400307.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371170|gb|EFM24787.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 388
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 24/239 (10%)
Query: 16 VHYVWFDEEPPE------DVYFEGLTRINATQG---LVTLTLTPL-KGRSPIIEHY-LSA 64
+ +W +E + + R G T P + +S + + Y +
Sbjct: 100 IARLWIEELAEFKTEDEVSMIENSILRGELEDGLEYKFYYTYNPPKRKQSWVNKRYETTF 159
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDIV 123
+ + V T + P+ ++ + + R + +GSG +
Sbjct: 160 LAENTFVHHSTYLDNPYISQAFKNEAEHIKNTKPLKYRWEYLGEPIGSGVVPFDNLVFRE 219
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I++ ++ G+D+G+ PFA L +++ IY+ + + A +K
Sbjct: 220 ISTKELLNFDNIRQGIDWGYANDPFAFIRLHYDKTRRRIYIFDELYRVKLSNREAAAKIK 279
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ G D + + G+K+ VE G + D
Sbjct: 280 ANGWNDCKI------IADSAEPKSIDE-MWEYGLKIYGAN----KRPGSVEYGEKWLDD 327
>gi|309797383|ref|ZP_07691776.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
145-7]
gi|308119007|gb|EFO56269.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
145-7]
Length = 418
Score = 96.4 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/255 (11%), Positives = 71/255 (27%), Gaps = 14/255 (5%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS-- 63
D + +H+V DE + D +++ L ++ L + KG S + +
Sbjct: 110 PDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQ 169
Query: 64 ----ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ + ++P E + + SGR++ +
Sbjct: 170 NVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFD 229
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
++ + L G DF + + + + ++ +
Sbjct: 230 RNVHVKPLQFNPRLPIWVGQDFNIDPMSSVI--LQPQPNGELWAIDELVLFSSNTAEVCD 287
Query: 180 ALK----SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W + G GE ++ +G + ++ V A
Sbjct: 288 ELERRFWRWKSQVTVFPDPAGAYRQHARGESDVDIFKEKGFLRVDYSKKHPPIADRVNAV 347
Query: 236 ISDMLDRMRSGRWKV 250
++ R +
Sbjct: 348 NRMLMSASGDIRLYI 362
>gi|255994017|ref|ZP_05427152.1| phage terminase, large subunit, PBSX family [Eubacterium saphenum
ATCC 49989]
gi|255993685|gb|EEU03774.1| phage terminase, large subunit, PBSX family [Eubacterium saphenum
ATCC 49989]
Length = 466
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/259 (12%), Positives = 75/259 (28%), Gaps = 17/259 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
E +D Q T + DE P+ + L R + V L P I + Y+
Sbjct: 122 EASQDSLQGLTAAGAYGDEAALFPQSFTEQMLGRCSVKGSKVFLNCNPSSPNHYIKKEYI 181
Query: 63 SASS-SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + + T+++ + +R Y E +G + G ++ ++
Sbjct: 182 DKADAKNICRLHFTLDDNLTLDPSTVERYHRMYTGVFYERFIRGLWVSAEGLVYKEFADN 241
Query: 122 IVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVWNRDSDVIYVVKNYR-CREQTP 174
+ +D + G + + + + + + TP
Sbjct: 242 VSSYIVDDDYVASEDIAFATIGVDFGGNKSAHSFTLTGFTKGLGEVMTLDEWYSDERLTP 301
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS--AQY-RRQGMKMLPECATFDDGSNG 231
+ + + + D + R+G+ + + G
Sbjct: 302 DELSSRFCDFVQRAKERYNVYEAYCDSAEQVLIKGFEVATARRGLAI--DIKNAIKG--A 357
Query: 232 VEAGISDMLDRMRSGRWKV 250
+ I+ + S RW V
Sbjct: 358 INDRIAFYNSLIASRRWHV 376
>gi|28198423|ref|NP_778737.1| hypothetical protein PD0512 [Xylella fastidiosa Temecula1]
gi|28056507|gb|AAO28386.1| phage-related protein [Xylella fastidiosa Temecula1]
Length = 257
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/128 (47%), Positives = 85/128 (66%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK++EQG +KWQ++ V ++WFDE+PPEDVYFEG+ R N T GLV +T PLK ++
Sbjct: 7 LKSFEQGGEKWQADPVDWIWFDEQPPEDVYFEGIIRTNRTFGLVCMTFAPLKSILTVVWR 66
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + DR ++M I + HY ++ RI SYP +ER+ART+G P LGSGR+FPI E
Sbjct: 67 FLLENVPDRADVQMIIEDAEHYLLEDCARITASYPPYERQARTQGVPALGSGRLFPIAGE 126
Query: 121 DIVINSLD 128
I +
Sbjct: 127 KIGVAPEK 134
>gi|307579537|gb|ADN63506.1| bacteriophage terminase large (ATPase) subunit and inactivated
derivatives-like protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 278
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/128 (47%), Positives = 85/128 (66%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK++EQG +KWQ++ V ++WFDE+PPEDVYFEG+ R N T GLV +T PLK ++
Sbjct: 28 LKSFEQGGEKWQADPVDWIWFDEQPPEDVYFEGIIRTNRTFGLVCMTFAPLKSILTVVWR 87
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + DR ++M I + HY ++ RI SYP +ER+ART+G P LGSGR+FPI E
Sbjct: 88 FLLENVPDRADVQMIIEDAEHYLLEDCARITASYPPYERQARTQGVPALGSGRLFPIAGE 147
Query: 121 DIVINSLD 128
I +
Sbjct: 148 KIGVAPEK 155
>gi|221199508|ref|ZP_03572552.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2M]
gi|221205590|ref|ZP_03578605.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2]
gi|221174428|gb|EEE06860.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2]
gi|221180793|gb|EEE13196.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2M]
Length = 425
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 19/239 (7%)
Query: 16 VHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ W +E E+ + + I A + L+ P I + + + +
Sbjct: 112 IDIAWVEEAQTITENSFRKLTPSIRAPGSQIWLSWNPELETDFIYQKVVIEGLPNCASLF 171
Query: 74 MTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS----- 126
+ ++ P + ++ R ++ + G P+ E + +
Sbjct: 172 VNFDQNPWFPDELRLEEQDMKGKDPDMHRHVWLGMPLPAVAGAIYFNEISQMESEGRLLN 231
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ I + MD G++ + V + +V + R + + G
Sbjct: 232 IPIDDGLNTYIIMDLGFNDFTSC--PVVQQVGGEFRIVDFFENRRKPLSWFSEQFIEAGY 289
Query: 187 WLPWAWP--HDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G + A+ + G ++ + VEAGI + + +
Sbjct: 290 EGAIVVMPHDAEHERLDSDGVSMKAKMQALGWEVE------IVANMPVEAGIRLVREML 342
>gi|238021116|ref|ZP_04601542.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147]
gi|237868096|gb|EEP69102.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147]
Length = 408
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 21/243 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
Q + +E E + I A + + + P + S +
Sbjct: 112 QSVKSL--AKIDVCIVEEAEDISEAAWEVLEPTIRAPKSEIWVIWNPKQENSATDRRFRK 169
Query: 64 ASSSDRQVIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
++ M + P + E+ R+ + +G +
Sbjct: 170 NPPPRSCIMEMNYGDNPFFPPELEELRRHQQQTLDPARYAWIWEGAY--YEQSEAQVFRG 227
Query: 121 DIVINSLDIPEHWV-QIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
I E+W G+DFG+ P AA + +Y+ +
Sbjct: 228 KYEIAEFVPGENWDGAYFGLDFGFSQDPTAAVQCWI--HDNKLYIEREAGGVGIELDDTA 285
Query: 179 AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
A L++ + D E +S RR G+ P G VE GI
Sbjct: 286 AVLQAAMPDIGRYVVRA----DSARPESIS-YLRRHGL---PRIVGAVKGKGSVEDGIEF 337
Query: 239 MLD 241
+
Sbjct: 338 IKS 340
>gi|118443517|ref|YP_878252.1| PBSX family phage terminase large subunit [Clostridium novyi NT]
gi|118133973|gb|ABK61017.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT]
Length = 419
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 22/238 (9%)
Query: 15 TVHYVWFDEEPPEDVY------FEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ Y+W++E + Y + L R + V + P + + + + D
Sbjct: 134 YIKYIWYEEVDEFEGYDKIRNINQSLMR-GGPKFCVFYSFNPPESQRNWANMEVLETRKD 192
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDIVIN 125
+ V P +Q ++ + + G+G I
Sbjct: 193 KLVHHSNYLGVPREWLGKQFILEAEHLKKVNHLKYEHDYLGAVTGTGGEVFTNVTIRKIT 252
Query: 126 SLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+I G+DFG+ P +++ +Y+ + V +K
Sbjct: 253 DEEIASFDRVHRGLDFGYASDPLHYTVNHYDKTRRRLYIFYEIHKAGMSNSSAVETIKQE 312
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
K ++ + D ++ +++ G+K++ G + VE G+ + D
Sbjct: 313 NK------SNNRIVADSAEPRTIAE-FKKLGLKIIGA----KKGPDSVEHGVKFLQDL 359
>gi|309806821|ref|ZP_07700810.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 03V1-b]
gi|308166795|gb|EFO68985.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 03V1-b]
Length = 409
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/246 (13%), Positives = 81/246 (32%), Gaps = 18/246 (7%)
Query: 11 WQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA--SS 66
+ T + + +E V+ E R + + P + Y+ S+
Sbjct: 120 IRGMTSYGAYINEASLSTHAVFQEIKQRCSKEGARIICDTNPDIPTHWLKTEYIDNVDSN 179
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REARTKGEPILGSGRIFPIVEE-DIVI 124
+ + TI++ P + + S P + KG G G ++ ++ + I
Sbjct: 180 AGIKYFMFTIDDNPTLPKDYVVSLKASTPKGMFYDRAIKGLWCTGEGVVYRDFDQSTMTI 239
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ +P G+D+G+ H + + Y+++ + + + + V
Sbjct: 240 DRDKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNT-YLIEEHAHKHRFIDYWVDLAHDV 298
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
+ P D + L+ G++ + + +GI + M+
Sbjct: 299 QQKYGSTIP---FWCDSARPDNLNEFLT-HGIRAYN-------ANKAINSGIEAVGSLMK 347
Query: 245 SGRWKV 250
+ + V
Sbjct: 348 AKHFFV 353
>gi|182681090|ref|YP_001829250.1| bacteriophage terminase large (ATPase) subunit and inactivated
derivatives-like protein [Xylella fastidiosa M23]
gi|182631200|gb|ACB91976.1| Bacteriophage terminase large (ATPase) subunit and inactivated
derivatives-like protein [Xylella fastidiosa M23]
Length = 291
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/128 (47%), Positives = 85/128 (66%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK++EQG +KWQ++ V ++WFDE+PPEDVYFEG+ R N T GLV +T PLK ++
Sbjct: 41 LKSFEQGGEKWQADPVDWIWFDEQPPEDVYFEGIIRTNRTFGLVCMTFAPLKSILTVVWR 100
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + DR ++M I + HY ++ RI SYP +ER+ART+G P LGSGR+FPI E
Sbjct: 101 FLLENVPDRADVQMIIEDAEHYLLEDCARITASYPPYERQARTQGVPALGSGRLFPIAGE 160
Query: 121 DIVINSLD 128
I +
Sbjct: 161 KIGVAPEK 168
>gi|323441910|gb|EGA99548.1| hypothetical protein SAO46_2129 [Staphylococcus aureus O46]
Length = 407
Score = 96.0 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + T + +E E+V+ E +R + T + + P +++ Y+
Sbjct: 116 SGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIE 175
Query: 64 ASSS--DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + +++ N++ ++ I S P R G + G G ++ +
Sbjct: 176 NTDPKAGILSYQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + LD G+D+G+ H + + D + Y ++ + + +
Sbjct: 236 NENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDW 294
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V K + + + D E ++ + +G+
Sbjct: 295 VGIAK----DIVSRYGNINFYCDTARPEYITE--------FRRHRLRAINADKSKLSGVE 342
Query: 238 DMLDRMRSGRWKV 250
++ + + V
Sbjct: 343 EVAKLFKQNKLLV 355
>gi|148380306|ref|YP_001254847.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
gi|148289790|emb|CAL83898.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
Length = 448
Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 76/236 (32%), Gaps = 24/236 (10%)
Query: 16 VHYVWFDEEPPEDVY------FEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDR 69
+ Y+W++E + Y + L R + V + P + + + D+
Sbjct: 133 IKYIWYEEADEFENYDKIRNVNQSLMR-GGPEFEVFYSFNPPESQRNWTNMEVLEERKDK 191
Query: 70 QVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVIN 125
V T P EQ +++ + G + G+G I
Sbjct: 192 FVHHSTYLTVPKEWLGEQFVIEAEHLKKVNKTKYDHDYLGA-VTGTGGEVFRNVTVRNIT 250
Query: 126 SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+I G+DFG+ P A +++ +Y+ + V +K
Sbjct: 251 DDEIKVFDHVKNGLDFGYAADPLAYIKCHYDKTRKRLYIFDEIVKVQLGNSKAVKLIKEK 310
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
K + + D +S +R+ G+ ++ G + VE GI +
Sbjct: 311 NK------LNMRVTADSAEPRTISE-FRKLGLNIIGAI----KGPDSVEHGIKFLS 355
>gi|309804997|ref|ZP_07699054.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 09V1-c]
gi|308165656|gb|EFO67882.1| phage terminase, large subunit, PBSX family [Lactobacillus iners
LactinV 09V1-c]
Length = 409
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/246 (13%), Positives = 82/246 (33%), Gaps = 18/246 (7%)
Query: 11 WQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA--SS 66
+ T + + +E V+ E R + + P + Y+ S+
Sbjct: 120 IRGMTSYGAYINEASLSTHAVFQEIKQRCSKEGARIICDTNPDIPTHWLKTEYIDNVDSN 179
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REARTKGEPILGSGRIFPIVEE-DIVI 124
+ + TI++ P + + S P + KG + G G ++ ++ + I
Sbjct: 180 AGIKYFMFTIDDNPTLPKDYVVSLKASTPKGMFYDRAIKGLWVTGEGVVYRDFDQSTMTI 239
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ +P G+D+G+ H + + Y++K + + + + V
Sbjct: 240 DRDKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNT-YLIKEHAHKHRFIDYWVDLAHDV 298
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
+ P D + L+ G++ + + +GI + M+
Sbjct: 299 QQKYGSTIP---FWCDSARPDNLNEFLT-HGIRAYN-------ANKAINSGIEAVGSLMK 347
Query: 245 SGRWKV 250
+ + V
Sbjct: 348 AKHFFV 353
>gi|312900430|ref|ZP_07759739.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0470]
gi|311292452|gb|EFQ71008.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0470]
Length = 451
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 70/227 (30%), Gaps = 16/227 (7%)
Query: 23 EEPPEDVYFEGLTRINAT-QGLVTLTLTPL-KGRSPIIEHYLSASSSD-RQVIRMTINET 79
EE + E + + P + +S + + Y S+ + V T
Sbjct: 158 EELEGKIVNESKRKNVYPFDYSFYYSYNPPKRRQSWVNKKYESSFIDNNTYVHHSTYLGN 217
Query: 80 PHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI---VINSLDIPEHWVQI 136
H +++ + + + R + + P I I +
Sbjct: 218 HHLSKKFIEEAENVKANKPLKYRWEYLGEAIGSGVVPFGNLKIEKGCITDEMVANFDNIR 277
Query: 137 GGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHD 195
G+DFG+ P A +++ + IY + + + +++ G + +
Sbjct: 278 NGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNRELAKKVRAKG------YESE 331
Query: 196 GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D + ++ +K + G + VE G + D
Sbjct: 332 RIGADSAEPKSIAELINEHSIK---KLYGVKKGPDSVEYGEEWLDDL 375
>gi|237737490|ref|ZP_04567971.1| phage terminase [Fusobacterium mortiferum ATCC 9817]
gi|229421352|gb|EEO36399.1| phage terminase [Fusobacterium mortiferum ATCC 9817]
Length = 447
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 82/285 (28%), Gaps = 51/285 (17%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQG--LVTLT 47
+ + K S TV + WF+E E + + +T T
Sbjct: 114 FRGLD-DPLKITSITVDVGYLCWAWFEEMYQIENEDDFNKIDVSIRGAVPNHLFKQITCT 172
Query: 48 LTPLKGRSPIIEHYLSASSSD-----------------RQVIRMTINETPHYNEQERKRI 90
P + + + D I +E +
Sbjct: 173 FNPWSETHWLNDRFFKGGKEDKDNLLTKGLAIHKNTKDILAITTNFRANEFLDEADLNVF 232
Query: 91 IDSYPLHEREARTKGEPILG--SGRIFPIVEE-DIVINSLDIPEHWVQIGGMDFGWH-HP 146
+ R +G G G +F E + IN+L ++ G+D+G+ P
Sbjct: 233 NLMKEENPRRFEIEGNGNWGICEGTVFYRWEVLNFDINTLIKTGKYLTCIGLDYGFTNDP 292
Query: 147 FAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQ 206
A + N D IY++ + V +K G + + D +
Sbjct: 293 TALIVSLVNEDEKEIYIIDEHYQTGMFNEDIVELIKYKG------YSKSVIIADSAEEKS 346
Query: 207 LSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ ++ G+ P + G + + GI + KVF
Sbjct: 347 IK-WMKKNGV---PRIKSSVKGPDSIMFGIQYLQGY------KVF 381
>gi|319654620|ref|ZP_08008701.1| hypothetical protein HMPREF1013_05323 [Bacillus sp. 2_A_57_CT2]
gi|317393686|gb|EFV74443.1| hypothetical protein HMPREF1013_05323 [Bacillus sp. 2_A_57_CT2]
Length = 400
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/256 (13%), Positives = 83/256 (32%), Gaps = 26/256 (10%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
K + T +E + E ++R + + L P P+ +
Sbjct: 106 WKKARGFTAAGALLNEGTALHDMFVKEVISRCSYPGAQILLDTNPENPAHPVKTDIIDKD 165
Query: 66 SS-------DRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
+ T+ + +E+ + I+ + P + G + G I+
Sbjct: 166 GQRLDNGRLNIVAFHFTLFDNIFLDEEYVQSIVAATPTGMFTDRDINGLWVAAEGVIYKD 225
Query: 118 VEED---IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
D I + G+D+G+ H + L + D +++++ + +
Sbjct: 226 FNRDKHYISRAKFEKKNIVKYFAGVDWGYEHHGSICVLAEDDVGD-LFLIEEHAKQHMEI 284
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ V K + + D E + ++RR+G++ + V A
Sbjct: 285 DYWVGVAKELKGR----YGNINFYCDSARPEHV-QRFRREGLRAIEAVKK-------VVA 332
Query: 235 GISDMLDRMRSGRWKV 250
GI ++ + ++ +
Sbjct: 333 GIEEVARLFKLNKFFI 348
>gi|222151170|ref|YP_002560324.1| hypothetical protein MCCL_0921 [Macrococcus caseolyticus JCSC5402]
gi|222120293|dbj|BAH17628.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 416
Score = 95.2 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 89/256 (34%), Gaps = 27/256 (10%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-- 61
G + T + + +E E+V+ E +R + + + P +++ Y
Sbjct: 116 SGIGAIRGMTAYGAYINEASLAHEEVFDEIKSRCSGYGARILVDTNPDHPEHWLLKDYIE 175
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR-TKGEPILGSGRIFPIVE- 119
+ + + + +++ NE+ ++ I S P R G + G G ++ +
Sbjct: 176 NTDAKAGILSYQFKLDDNTFLNERYKQSIKASTPSGMFYERNINGMWVSGDGVVYSDFDL 235
Query: 120 --EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
I + L+ G+D+G+ H + + + + +Y+++ + + +
Sbjct: 236 EQNTITADELNEIPMKEYFAGVDWGYEHYGSIVVMAKDFKEN-LYLIEEHAHQHKFIDEW 294
Query: 178 VAA---LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
++ +P+ +H K+ ++ +G+ + A
Sbjct: 295 AMIAKDIEERYGKIPFYCDTARTEHIKK--------FKDEGINAVYANKNR-------MA 339
Query: 235 GISDMLDRMRSGRWKV 250
G+ + + V
Sbjct: 340 GVEQVAKLFKLNCLFV 355
>gi|66394679|ref|YP_240816.1| ORF009 [Staphylococcus phage X2]
gi|62636903|gb|AAX92014.1| ORF009 [Staphylococcus phage X2]
Length = 421
Score = 95.2 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 27/256 (10%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 113 AQNPERLKSLKDSRFPFSISWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNP 172
Query: 51 L-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y S + + V T P ++Q + + +E+ R +
Sbjct: 173 PKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE 232
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIG-GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P I + + I +DFG+ P A +++ VIY +
Sbjct: 233 AIGSGVVPFNNLRIEEIPQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDE 292
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + LK G + D + D + ++ + + +
Sbjct: 293 HYGVQISNREFANWLKKKG------YQSDEVFADSAEPKSIAELKQEH---GIKKIKGVK 343
Query: 227 DGSNGVEAGISDMLDR 242
G++ VE G + D
Sbjct: 344 KGADSVEFGEQWLDDL 359
>gi|254362872|ref|ZP_04978947.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
gi|153094509|gb|EDN75343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
Length = 410
Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 68/234 (29%), Gaps = 17/234 (7%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE E + + + + + +T P S + + +I M+
Sbjct: 124 IAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPENRGSATDTRFRQNPPENSCIIEMS 183
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + EQER +G+ I +
Sbjct: 184 YQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGDY--LESSDAQIFRDKYQELEFKPNPD 241
Query: 133 WV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ G+DFG+ + A W D D +Y+ + A L +
Sbjct: 242 FNGPYYGLDFGFANDPTACVKCWVFDDD-LYIEREAGKVRLELDETAAYLANALPD---- 296
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
+ ++ D E +S +R G+ P VE G+ + +
Sbjct: 297 LSNYTVRADSARPESIS-YLKRHGL---PYIQPVPKWKGSVEDGVEHIKSYRKV 346
>gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille]
gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 436
Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 13/223 (5%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
D + V DE + V+ + + G + TP + +
Sbjct: 111 NADALRGLFFDGVVADEYGDWKPSVWGYVIRPALADRGGWAVIIGTPKGRNQFWEIYQHA 170
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG-----SGRIFPIV 118
+ D + + +E+ +E + + + + G+
Sbjct: 171 GVNEDWLCLTIRASESGLLPPKEIEALQLELTEDAWRQEMECDFDAALPGAIFGKEIWQA 230
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
E+D + +D G+ A + ++ Y +
Sbjct: 231 EQDGRVKDDLYDPELKVHAVLDLGFTDDTAIWWFQV---GKELRIIDCYSTHGMPIAHYN 287
Query: 179 AALKSWGKWLP--WAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
L + PHD ++G + Q+R G K
Sbjct: 288 DVLHAKNYKYGDWLWLPHDARAKSLQTGRSIEEQFRSLGWKPR 330
>gi|303246839|ref|ZP_07333116.1| protein of unknown function DUF264 [Desulfovibrio fructosovorans
JJ]
gi|302491856|gb|EFL51736.1| protein of unknown function DUF264 [Desulfovibrio fructosovorans
JJ]
Length = 485
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 73/288 (25%), Gaps = 56/288 (19%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRIN----------ATQGLVTLTLTPLK 52
E +Q +H + DE Y R+ + P
Sbjct: 121 EADVFAYQGAEIHLLLIDELTHFTEFMYDYLRGRLRCTLEAPPEMRHKIPGIVCASNPGG 180
Query: 53 GRSPIIE-HYLSASSSD-------------RQVIRMTINETPHY--NEQERKRIIDSYPL 96
++ ++ + R I + + + + +D+ P
Sbjct: 181 VGHAFVKARFVDFAPPMTPRRAPDAEGGMLRCHIPGRLADNAILLARDPGYAKRLDALPE 240
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
R A G+ + G+ F V+ +PE D+G+ PF+ G +
Sbjct: 241 PYRTAYRDGDWDVFMGQAFAFSRRLHVVKPRPVPETAPLFMTFDWGYGAPFSVGWWWVDG 300
Query: 157 DSDVIYVVKNYRCRE--------QTPIFHVAALKSWGKWL------------PWAWPHDG 196
+ ++ + T ++ P +
Sbjct: 301 EGRLLR-FAEWYGTNGSPNQGLRLTDSRIADGIRERETRHGIAGRAITRLAGPDCFAKKP 359
Query: 197 LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
G + + G+ + P G A I +R+R
Sbjct: 360 DYRGGGQGPSTAEVFAAAGVFLAP-------GDPSRTAKIRQFHERLR 400
>gi|321315003|ref|YP_004207290.1| PBSX defective prophage terminase large subunit [Bacillus subtilis
BSn5]
gi|291483777|dbj|BAI84852.1| PBSX defective prophage terminase large subunit [Bacillus subtilis
subsp. natto BEST195]
gi|320021277|gb|ADV96263.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis BSn5]
Length = 433
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGR--SPIIEHYLSASSS---- 67
+ +W +E E + + E + R+ + + + T + H+
Sbjct: 116 ISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWTYRHFFRDERKKRFV 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T N+ E K++ + Y KG +
Sbjct: 176 LDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYLKQLDGLKEYDPDLYRIARKGRFGVN 235
Query: 111 SGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
R+ P E + + + + GMDFG+ A L + + +Y+
Sbjct: 236 GIRVLPQFEVLPHNQMKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L+ + + ++ D + + +R+QG +M+
Sbjct: 296 YYQNKMTDDRTAEELREF------IETQELIKADSAEPKSI-QYFRQQGFRMVGARK 345
>gi|237743779|ref|ZP_04574260.1| phage terminase [Fusobacterium sp. 7_1]
gi|229432810|gb|EEO43022.1| phage terminase [Fusobacterium sp. 7_1]
Length = 426
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/263 (14%), Positives = 90/263 (34%), Gaps = 39/263 (14%)
Query: 7 GRDKWQSN-TVHYVWFDE--EPPEDVYFEG--LTRINATQGLVTLTLTPLKGRSPIIEHY 61
+K +S V +W +E E + + E R + LT P+ + E +
Sbjct: 107 DPEKLKSIDNVDMIWIEECPEISYNAFNELNGRLRALEKDLHIFLTNNPVSVNNWTYERF 166
Query: 62 LS--------------ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKG 105
+ ++ D + + ++ K++ + +G
Sbjct: 167 IKKAGIDEEELYQNRIMTTDDTYYHHSVVEDNAFVTDEYIKQLKNFETYDIERYRIAYQG 226
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIG------GMDFGWH-HPFAAGHLVWNRDS 158
+ R+F +++ I + + G G+D+G+ A + +R++
Sbjct: 227 RFGIVGERVFTNIQKASDTEVQAIVKELSKYGLGNLYDGLDYGFSFSYNALVRMALDREN 286
Query: 159 DVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKM 218
+++Y+ ++ + LK P H + D E + + RR G K+
Sbjct: 287 NLLYIYDEVYNKKLITSELIETLK------PIKNKHREIIADNARPET-TEEIRRAGFKI 339
Query: 219 LPECATFDDGSNGVEAGISDMLD 241
+ + + G+ + G+ +
Sbjct: 340 I----SCEKGAGSILDGLQKLRS 358
>gi|148544063|ref|YP_001271433.1| PBSX family phage terminase large subunit [Lactobacillus reuteri
DSM 20016]
gi|184153441|ref|YP_001841782.1| putative phage terminase [Lactobacillus reuteri JCM 1112]
gi|227365124|ref|ZP_03849143.1| PBSX family phage terminase large subunit [Lactobacillus reuteri
MM2-3]
gi|325682397|ref|ZP_08161914.1| prophage Lp1 protein 38 [Lactobacillus reuteri MM4-1A]
gi|148531097|gb|ABQ83096.1| phage terminase, large subunit, PBSX family [Lactobacillus reuteri
DSM 20016]
gi|183224785|dbj|BAG25302.1| putative phage terminase [Lactobacillus reuteri JCM 1112]
gi|227069827|gb|EEI08231.1| PBSX family phage terminase large subunit [Lactobacillus reuteri
MM2-3]
gi|324978236|gb|EGC15186.1| prophage Lp1 protein 38 [Lactobacillus reuteri MM4-1A]
Length = 431
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 79/242 (32%), Gaps = 27/242 (11%)
Query: 15 TVHYVWFDEE------PPEDVYFEGLTRINATQG---LVTLTLTPLKGRSPIIEHYLSAS 65
+ +VW +E + E + G +T+T P + + +
Sbjct: 125 YLSFVWIEEAYEIENADKLETLQESIRGRIDVPGAFKQITVTFNPWNAQHWLKRTFFDPE 184
Query: 66 --SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEED 121
+D T +EQ+R+R +D Y + R A+ G+ + G +F E
Sbjct: 185 TRKADTFAQTTTFRCNEWLDEQDRQRYLDLYKTNPRRAKVAADGDWGVSEGLVFEDNVER 244
Query: 122 IVINSLDIPEHWVQ-IGGMDFG-WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+ + + G+D+G P A L + S I++ QT
Sbjct: 245 VEFDPQEKLTECGHAGFGLDYGFGGDPNAFVALAIDPKSKNIWIYDEMYTYHQTTPHIAD 304
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
LK G + H + D S E + Q + + +EAGI +
Sbjct: 305 WLKKNG------YQHASIYADSASPE-RTQQLLDLDIDNIQSVVKTP-----IEAGIDQL 352
Query: 240 LD 241
Sbjct: 353 WQ 354
>gi|21910863|ref|NP_665131.1| putative terminase large subunit - phage associated [Streptococcus
pyogenes MGAS315]
gi|28876409|ref|NP_795632.1| putative terminase large subunit [Streptococcus pyogenes phage
315.5]
gi|21905069|gb|AAM79934.1| putative terminase large subunit - phage-associated [Streptococcus
pyogenes MGAS315]
Length = 273
Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 13/204 (6%)
Query: 43 LVTLTLTPL-KGRSPIIEHYLSASSSDRQVIRM-TINETPHYNEQERKRIIDSYPLHERE 100
T P + +S + + Y S + T + P ++ + ER
Sbjct: 12 KFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRERSERR 71
Query: 101 ARTKGEPIL-GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDS 158
R + GSG + I + + G+D+G+ P A +++
Sbjct: 72 YRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFVRWHYDKKK 131
Query: 159 DVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKM 218
+ IY + Y ++ + L + G + D + + + + G+K
Sbjct: 132 NGIYAIDEYYGQKISNRQLAKWLTTKG------YQSDEMFAESAEPKSNAELKNEFGIK- 184
Query: 219 LPECATFDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 185 --RIKGVKKGPDSVEFGERWLDDL 206
>gi|216905967|ref|YP_002333563.1| gp2 [Bacillus phage TP21-L]
gi|215809694|gb|ACJ70528.1| gp2 [Bacillus phage TP21-L]
Length = 439
Score = 94.1 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 64/203 (31%), Gaps = 13/203 (6%)
Query: 44 VTLTLTPLKGR-SPIIEHYLSASSSD-RQVIRMTINETPHYNEQERKRIIDSYPLHEREA 101
+ P K R + + Y S+ D V T + + + + ++ +
Sbjct: 177 FFYSYNPPKRRAHWLNKKYNSSFIPDNTHVNHSTYLDNDYLTKAFYEEAEIEKKMNPLKY 236
Query: 102 RTKGEPIL-GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSD 159
R + GSG + I I + G+DFG+ P A G + +++ +
Sbjct: 237 RWEYLGEAIGSGVVPFDNIVSAEITDEQISQFDNIRQGIDFGYATDPLAFGRMHFDKKKN 296
Query: 160 VIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
+Y+ + + +K G D + ++ ++
Sbjct: 297 TLYIFDELYGVQISNRKLAEWIKKKGYQDIEI------TCDSAEPKSIAELKNEHDIR-- 348
Query: 220 PECATFDDGSNGVEAGISDMLDR 242
+ G + VE G + D
Sbjct: 349 -KVKGAKKGPDSVEYGTEWLGDL 370
>gi|72384687|gb|AAZ67635.1| phage terminase large subunit-like protein [Haemophilus parasuis
29755]
Length = 405
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 17/230 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + L + + LT P K S + ++ M
Sbjct: 125 LAWIDEAESVSEMAWRKLLPTVRENGSEIWLTWNPEKKGSATDLRFRQHQDESMAIVEMN 184
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + EQER R +G+ L + + +P+
Sbjct: 185 YSDNPWFPDVLEQERLRDKARLDDATYRWIWEGDY-LEESEAQVFRGKYQELEFKPLPDF 243
Query: 133 WVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
G+DFG+ P AA +D +Y+ L+ +
Sbjct: 244 EGPYHGLDFGFAQDPTAAIKCWVFKD--ELYIEYEAGKVGLELDDTATFLQKGIASIEQY 301
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
++ D E +S +R G+ P VE GI+ +
Sbjct: 302 V----IRADSARPESIS-YLKRHGL---PRIDGVSKWKGSVEDGIAHIKS 343
>gi|311067750|ref|YP_003972673.1| PBSX defective prophage terminase large subunit [Bacillus
atrophaeus 1942]
gi|310868267|gb|ADP31742.1| PBSX defective prophage terminase (large subunit) [Bacillus
atrophaeus 1942]
Length = 432
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASSS---- 67
+ +W +E E + + E + R+ + + T P+ + H+ +
Sbjct: 116 ISLIWIEECSEVKYEGFKELIGRLRHPKLDLHMICTTNPVGTSNWTYRHFFRDERNKRYI 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T + E K++ + Y +G +
Sbjct: 176 LDDQELYKKRTIVSGDTYYHHSTALDNLFLPESYVKQLDGLKRYDPDLYRIARQGRFGVN 235
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
R+ P E + + + + GMDFG+ A L + + +Y+
Sbjct: 236 GVRVLPQFEVLPHEQAEECIANISRPIFRTGMDFGFEESYNAVIRLAVDPEKKHLYIYWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L+ + + D + + +R+QG +M+
Sbjct: 296 YYKNKMTDDRTAEELRELAEKQEVI------KADSAEPKSI-QYFRQQGFRMVAARK 345
>gi|16078323|ref|NP_389140.1| PBSX defective prophage terminase large subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|221309110|ref|ZP_03590957.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. subtilis str. 168]
gi|221313437|ref|ZP_03595242.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221318360|ref|ZP_03599654.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221322633|ref|ZP_03603927.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. subtilis str. SMY]
gi|1722887|sp|P39786|XTMB_BACSU RecName: Full=PBSX phage terminase large subunit
gi|1225943|emb|CAA94059.1| PBSX terminase [Bacillus subtilis subsp. subtilis str. 168]
gi|2633612|emb|CAB13115.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. subtilis str. 168]
Length = 433
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGR--SPIIEHYLSASSS---- 67
+ +W +E E + + E + R+ + + + T + H+
Sbjct: 116 ISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWTYRHFFRDERKKRFV 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T N+ E K++ + Y KG +
Sbjct: 176 LDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDPDLYRIARKGRFGVN 235
Query: 111 SGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
R+ P E D V + + GMDFG+ A L + + +Y+
Sbjct: 236 GIRVLPQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L+ + + ++ D + + +R+QG +M+
Sbjct: 296 YYQNKMTDDRTAEELREF------IETQELIKADSAEPKSI-QYFRQQGFRMVGARK 345
>gi|52079727|ref|YP_078518.1| putative phage terminase (large subunit) [Bacillus licheniformis
ATCC 14580]
gi|52785096|ref|YP_090925.1| XtmB [Bacillus licheniformis ATCC 14580]
gi|319646468|ref|ZP_08000697.1| XtmB protein [Bacillus sp. BT1B_CT2]
gi|52002938|gb|AAU22880.1| putative phage terminase (large subunit) [Bacillus licheniformis
ATCC 14580]
gi|52347598|gb|AAU40232.1| XtmB [Bacillus licheniformis ATCC 14580]
gi|317391056|gb|EFV71854.1| XtmB protein [Bacillus sp. BT1B_CT2]
Length = 432
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 75/237 (31%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTL--TLTPLKGRSPIIEHYLSASSS---- 67
+ +W +E E + + E + R+ + + T P+ + H+ +
Sbjct: 116 ISLIWIEECSEVKYEGFKELIGRLRHPYHRLYMMLTTNPVSQSNWTYRHFFKDERNKRFI 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T ++ + K++ + +Y KG +
Sbjct: 176 LDDEVLYKKRVAVVGDTYYHHSTADDNLFLPKSYLKQLDDMKAYDPDLYRIARKGRFGVN 235
Query: 111 SGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
R+ P E + V+ + + ++ GMDFG+ A + D +Y+
Sbjct: 236 GTRVLPQFEVMEHEEVMRQISAISNPLKRTGMDFGFEESYNAVVRAAVDPDKKYLYIYWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L + A + ++ D + + +R+ G M
Sbjct: 296 YYKNKMTDDKTAEELHEF------AVAKELIKADPAEPKSI-QFFRQNGFNMTAARK 345
>gi|283852514|ref|ZP_06369782.1| protein of unknown function DUF264 [Desulfovibrio sp. FW1012B]
gi|283572122|gb|EFC20114.1| protein of unknown function DUF264 [Desulfovibrio sp. FW1012B]
Length = 471
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 77/303 (25%), Gaps = 64/303 (21%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRIN----------ATQGLVTLTLTPLK 52
E +Q +H + DE Y R+ V P
Sbjct: 103 EADVFAYQGVEIHLLVIDELTHFTEFQYDYLRGRLRCALAVPPALRHKIPGVVCASNPGG 162
Query: 53 GRSPIIEHYLSASSSD--------------RQVIRMTINETPHY--NEQERKRIIDSYPL 96
++ + R I + + + +D+ P
Sbjct: 163 VGHGFVKARFVDFAPPLTPRRAPAEEGGMLRCFIPGKLADNQILLSRDPGYALRLDALPE 222
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
R A G+ + G+ F V+ +PEH D+G+ PF+ G +
Sbjct: 223 PYRSAYRDGDWDIFLGQAFAFSRRLHVVKPRPVPEHGPLFMTFDWGYGAPFSVGWWWVDA 282
Query: 157 DSDVIYVVKNYRCR----EQTP-------IFHVAALKSWGKWL------------PWAWP 193
D + + +TP A + L P +
Sbjct: 283 DGRLFR-FSEWYGAAGGPGRTPQGLRLADSGIAAGILEREARLGLAGRALTRLAGPDCFA 341
Query: 194 HDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGR-----W 248
G + + G+ ++P G A I +R+R
Sbjct: 342 KKPDYRGGGQGPSTAEVFAGAGLFLVP-------GDPSRVAKIRQFHERLRPREDGPPLL 394
Query: 249 KVF 251
+VF
Sbjct: 395 QVF 397
>gi|294789839|ref|ZP_06755067.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri
ATCC 29453]
gi|294482221|gb|EFG29920.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri
ATCC 29453]
Length = 413
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/246 (15%), Positives = 74/246 (30%), Gaps = 21/246 (8%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
L+ Q + +E E + I A + + + P + S
Sbjct: 113 LRNNTQSIKSL--ANIDICVIEEAEDISESAWEVLEPTIRAPKSEIWVIWNPKQRGSATD 170
Query: 59 EHYLSASSSDRQVIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ + ++ + ++ P + +++RK +G
Sbjct: 171 TRFRQNTPPRSCIVEINHSDNPFFPDVLDEQRKYQQKVLDPARYAWIWEGAY--YEQSDA 228
Query: 116 PIVEEDIVINSLDIPEHWV-QIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + W G+DFG+ P AA + +++ +
Sbjct: 229 QVFAGKYAVREFTPQSDWNGAYFGLDFGFSQDPTAAIECYV--ADNCLWIYREAGGVGLE 286
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
LKS +P H ++ D E +S RR G+ P + G VE
Sbjct: 287 LDDTAGCLKSI---MPEIDKH-IIRADSARPESIS-YLRRHGL---PRIVAVEKGRGSVE 338
Query: 234 AGISDM 239
+GI +
Sbjct: 339 SGIEFI 344
>gi|71898835|ref|ZP_00681003.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71731421|gb|EAO33484.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 291
Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/128 (48%), Positives = 87/128 (67%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
LK++EQG +KWQ++ V+++WFDE+PPEDVYFEG+TR N T GLV +T PLK ++
Sbjct: 41 LKSFEQGGEKWQADPVNWMWFDEQPPEDVYFEGITRTNRTFGLVCMTFAPLKSILTVVWR 100
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+L + DR ++M I + HY ++ RI SYP +ER+ART+G P LGSGR+FPI E
Sbjct: 101 FLLENVPDRADVQMIIEDAEHYLLEDCARITASYPPYERQARTQGVPALGSGRLFPIAGE 160
Query: 121 DIVINSLD 128
I +
Sbjct: 161 KIGVAPEK 168
>gi|321312115|ref|YP_004204402.1| putative phage-related terminase large subunit [Bacillus subtilis
BSn5]
gi|320018389|gb|ADV93375.1| putative phage-related terminase large subunit; skin element
[Bacillus subtilis BSn5]
Length = 431
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGL--VTLTLTPLKGRSPIIEHYLSASSS---- 67
+ +W +E E + + E L R+ + L+ P+ + +H+
Sbjct: 115 ISLIWIEECSEVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFV 174
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILG 110
D T ++ E +++ Y KG +
Sbjct: 175 LDDKELYEKRIIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHFGVN 234
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQI---GGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
R+ P EE L + GMDFG+ A + + + +Y+
Sbjct: 235 GIRVLPQFEEWPHEEVLKAIADINRPLKRVGMDFGFVESYNAVVRVAVDPEKKYLYIYWE 294
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y T LK + + ++ D + + +++ G M+
Sbjct: 295 YYKNGLTDDKTAEELKEF------VETKELIKSDSAEPKTIR-FFQQHGFNMVGARK 344
>gi|308173233|ref|YP_003919938.1| PBSX terminase large subunit [Bacillus amyloliquefaciens DSM 7]
gi|307606097|emb|CBI42468.1| PBSX terminase (large subunit)) [Bacillus amyloliquefaciens DSM 7]
gi|328553846|gb|AEB24338.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens TA208]
gi|328911299|gb|AEB62895.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens LL3]
Length = 432
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGR--SPIIEHYLSASSS---- 67
+ +W +E E + + E + R+ + + + T + H+
Sbjct: 116 ISLIWIEECSEVKYEGFKELIGRLRHPELSLHMICTTNPVGTSNWTYRHFFRDEQKKRFV 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T + + K++ + Y KG+ +
Sbjct: 176 LDDHTLYEKGTVVKGDTYYHHSTACDNLFLLKSYIKQLDSLRQYDPDLYRIARKGQFGVN 235
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
R+FP + + + GMDFG+ A L + D +Y+
Sbjct: 236 GIRVFPQFQVMEHTEVTERIAAIRRPLFRTGMDFGFEESYNAVIRLAVDPDKKELYIFWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L+ + D + + +RRQG M+
Sbjct: 296 YYKNKMTDDQTAEELQELADKKELI------KADSAEPKSI-QYFRRQGFCMVAAKK 345
>gi|221314872|ref|ZP_03596677.1| hypothetical protein BsubsN3_14247 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
Length = 433
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGL--VTLTLTPLKGRSPIIEHYLSASSS---- 67
+ +W +E E + + E L R+ + L+ P+ + +H+
Sbjct: 117 ISLIWIEECSEVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFV 176
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILG 110
D T ++ E +++ Y KG +
Sbjct: 177 LDDKELYEKRIIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHFGVN 236
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQI---GGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
R+ P EE + + + GMDFG+ A + + + +Y+
Sbjct: 237 GIRVLPQFEERPHEEVMTAISNINRPLKRVGMDFGFVESYNAVVRVAVDHEKKYLYIYWE 296
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y T LK + + + ++ D + + +++ G M+
Sbjct: 297 YYKNGLTDDKTAEELKEFAE------TKELIKADSAEPKTIR-YFQQHGFNMVGARK 346
>gi|240115343|ref|ZP_04729405.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
Length = 424
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|126652757|ref|ZP_01724909.1| hypothetical protein BB14905_21478 [Bacillus sp. B14905]
gi|126590446|gb|EAZ84565.1| hypothetical protein BB14905_21478 [Bacillus sp. B14905]
Length = 420
Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/253 (14%), Positives = 86/253 (33%), Gaps = 38/253 (15%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRS 55
+ ++ +K +S + +W +E E + E L R+ + + L+ P+ +
Sbjct: 100 FRGMDK-PEKLKSINNISLIWLEECSEIKYAGFKELLGRLRHPTLKLFIILSTNPVSKGN 158
Query: 56 PIIEHYLSASSS-------------------DRQVIRMTINETPHYNEQERKRI--IDSY 94
+ +H+ + T ++ +++ ++ Y
Sbjct: 159 WVYKHFFKNELEEYFVLDDEELYKQQTIIVNNTYYHHSTADDNLFLPVSYIEQLDEMELY 218
Query: 95 PLHEREARTKGEPILGSGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAG 150
KG + + P E + V+N + + ++ GMDFG+ A
Sbjct: 219 DPDLYRIARKGRFGVNGVLVLPQFEIKPHEEVMNEIALIRKPIRKNGMDFGFVDSYNALL 278
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
+V + + +Y+ Y R T L+ G ++ D + ++
Sbjct: 279 RMVVDHEKKWLYIYWEYYKRGMTDDKTADELEEEG------LKKSIIKADNAEPKTIA-Y 331
Query: 211 YRRQGMKMLPECA 223
Y+++G +M
Sbjct: 332 YKQRGFRMFACKK 344
>gi|16079672|ref|NP_390496.1| phage-related terminase large subunit; skin element [Bacillus
subtilis subsp. subtilis str. 168]
gi|221310548|ref|ZP_03592395.1| hypothetical protein Bsubs1_14326 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221319794|ref|ZP_03601088.1| hypothetical protein BsubsJ_14163 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324073|ref|ZP_03605367.1| hypothetical protein BsubsS_14297 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|1176739|sp|P45916|YQAT_BACSU RecName: Full=Uncharacterized protein yqaT; AltName: Full=ORF50
gi|1217848|dbj|BAA06933.1| ORF50 [Bacillus subtilis]
gi|1303739|dbj|BAA12395.1| YqaT [Bacillus subtilis]
gi|2635064|emb|CAB14560.1| putative phage-related terminase large subunit; skin element
[Bacillus subtilis subsp. subtilis str. 168]
Length = 431
Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGL--VTLTLTPLKGRSPIIEHYLSASSS---- 67
+ +W +E E + + E L R+ + L+ P+ + +H+
Sbjct: 115 ISLIWIEECSEVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFV 174
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILG 110
D T ++ E +++ Y KG +
Sbjct: 175 LDDKELYEKRIIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHFGVN 234
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQI---GGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
R+ P EE + + + GMDFG+ A + + + +Y+
Sbjct: 235 GIRVLPQFEERPHEEVMTAISNINRPLKRVGMDFGFVESYNAVVRVAVDHEKKYLYIYWE 294
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y T LK + + + ++ D + + +++ G M+
Sbjct: 295 YYKNGLTDDKTAEELKEFAE------TKELIKADSAEPKTIR-YFQQHGFNMVGARK 344
>gi|11863101|ref|NP_071818.1| putative large terminase subunit [Methanothermobacter phage
psiM100]
gi|11692721|gb|AAG39957.1|AF301375_17 putative large terminase subunit [Methanothermobacter phage
psiM100]
Length = 467
Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/259 (16%), Positives = 78/259 (30%), Gaps = 17/259 (6%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEP-----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
+E+ R ++Q ++ HY+ FDE F L + + T G
Sbjct: 156 HEKDRYRYQGSSYHYIAFDELTEFLESQYRFMFRSLRKEADDPIPLRFRATSNPGGIGHE 215
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG--SGRIFP 116
+ ++ I T E P+ N E + ++ R +G+ + G
Sbjct: 216 WVKTRFITGEKTFIPSTWRENPYLNRDEYEEALNMLDHVTRRQLKEGDWDVSIQGGVFRR 275
Query: 117 IVEEDIVINSLDIPEHWVQI---GGMDFGWHHP--FAAGHLVWNRDSDVIYVVKNYRCRE 171
E I D+ G + P + ++D D YV+ R R
Sbjct: 276 EWFEIIDTPPHDLVMKLRYWDLAATPHDGSNDPDYTVGLLMGVDQD-DYYYVLDIQRFRG 334
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
L++ + + + S ++ Y R ++ A G
Sbjct: 335 SPGEVKARVLRTAEEDGREVII--AKEEEPGSSGKIVTDYLRSLLQGYTLRADRVTGDKT 392
Query: 232 VEAGISDMLDRMRSGRWKV 250
A + S R KV
Sbjct: 393 TRA--LPVSSYAESFRIKV 409
>gi|268597147|ref|ZP_06131314.1| phage terminase [Neisseria gonorrhoeae FA19]
gi|268550935|gb|EEZ45954.1| phage terminase [Neisseria gonorrhoeae FA19]
Length = 426
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 113 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 170
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 171 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQ 230
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 231 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 288
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 289 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNAAGIEEG 343
Query: 236 ISDMLDRM 243
I
Sbjct: 344 IRAARMLF 351
>gi|240081035|ref|ZP_04725578.1| putative phage associated protein [Neisseria gonorrhoeae FA19]
gi|240117647|ref|ZP_04731709.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
gi|240123201|ref|ZP_04736157.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
gi|268603349|ref|ZP_06137516.1| phage terminase [Neisseria gonorrhoeae PID1]
gi|268681827|ref|ZP_06148689.1| phage terminase [Neisseria gonorrhoeae PID332]
gi|268587480|gb|EEZ52156.1| phage terminase [Neisseria gonorrhoeae PID1]
gi|268622111|gb|EEZ54511.1| phage terminase [Neisseria gonorrhoeae PID332]
Length = 424
Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNAAGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|330718718|ref|ZP_08313318.1| PBSX family phage terminase large subunit [Leuconostoc fallax KCTC
3537]
Length = 422
Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 39/263 (14%)
Query: 1 LKAYEQGRDKWQSNTVH-----YVWFDE------EPPEDVYFEGLTRINATQGLVTLTLT 49
+ + +K +S V ++WF+E + L R + + +
Sbjct: 115 FRGAD-DPEKIKSVKVDKGHIKFIWFEELSEFKAAAGIRNIKQSLGR--GGEQMFIFSFN 171
Query: 50 PLKGRSPIIEHYLSAS--SSDRQVIRMT-------INETPHYNEQERKRIIDSYPLHERE 100
P K + ++ D V R T +E + + E
Sbjct: 172 PPKSQRNWTNEFVEQEKVRDDVLVHRSTYLTVPKTWLGNVFISEA---KALKEVNPTAYE 228
Query: 101 ARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG-WHHPFAAGHLVWNRDSD 159
G+ ++G+G + I G+DFG P ++
Sbjct: 229 HEYLGK-VVGTGAEVFTNIINQRIPDELAATFDTIYRGLDFGFGADPLGYVEFYYDSTRR 287
Query: 160 VIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
+Y V V A+ K D ++ +R G+ +
Sbjct: 288 RLYFVNEIYKTGMKNRVAVEAIMKLNKDNNVV------IADSAEPRTIAE-FRDLGLNIQ 340
Query: 220 PECATFDDGSNGVEAGISDMLDR 242
P G VE GI + D
Sbjct: 341 PA----VKGPGSVEHGIKWLQDL 359
>gi|268601026|ref|ZP_06135193.1| phage terminase [Neisseria gonorrhoeae PID18]
gi|268585157|gb|EEZ49833.1| phage terminase [Neisseria gonorrhoeae PID18]
Length = 417
Score = 92.5 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 104 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 161
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 162 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQ 221
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 222 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 279
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 280 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 334
Query: 236 ISDMLDRM 243
I
Sbjct: 335 IRAARMLF 342
>gi|148379681|ref|YP_001254222.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
gi|237795044|ref|YP_002862596.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
Ba4 str. 657]
gi|148289165|emb|CAL83259.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
gi|229261270|gb|ACQ52303.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
Ba4 str. 657]
Length = 419
Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/236 (13%), Positives = 72/236 (30%), Gaps = 22/236 (9%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ Y+W++E D + L R + V + P + + + + D
Sbjct: 132 YIKYIWYEEVDEFEGKNKIDTINQSLMR-GGPKFFVFYSFNPPESQRNWCNQEVVETRKD 190
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDIVIN 125
+ V P EQ ++ + + G+G +
Sbjct: 191 KYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEVFRNLTIRELT 250
Query: 126 SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+I G+DFG+ P A + +++ +Y+ + + V +K
Sbjct: 251 DEEIKVFDRLKNGLDFGYAADPLAYVLMHYDKTRKRLYIFDEIYKVQLSNSKAVKEIKKL 310
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ + D ++ ++ G+ + G + VE GI +
Sbjct: 311 N------PLNKRVIADSAEPRTINE-FKTLGLNIKGA----KKGPDSVEHGIKFLS 355
>gi|163868971|ref|YP_001610200.1| hypothetical protein Btr_1983 [Bartonella tribocorum CIP 105476]
gi|161018647|emb|CAK02205.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 453
Score = 92.1 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQG-----LVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T P +P+ + + + + + +
Sbjct: 137 LCWVDEAEPVTETAWQTLIPTLREEGDDWNAELWVTWNPYHENAPVEKRFRNVDNPNIKG 196
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + E+ + + + +G + + +E I
Sbjct: 197 VEINWRDNPKFPEKLNRDRLSDLQQRPEQYNHIWEGGYLQAVQGAYYQKCLLEAEMEGRI 256
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q HV +
Sbjct: 257 TTVPRDPLMQVRIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHVGWVF 316
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G+ V+ I +
Sbjct: 317 QRGYEKALMVLPHDGATKDRVYNVSFESALQQAGFQTK---IIPNQGTGAVKMRIEAVRR 373
Query: 242 RM 243
Sbjct: 374 LF 375
>gi|224541923|ref|ZP_03682462.1| hypothetical protein CATMIT_01096 [Catenibacterium mitsuokai DSM
15897]
gi|224525157|gb|EEF94262.1| hypothetical protein CATMIT_01096 [Catenibacterium mitsuokai DSM
15897]
Length = 419
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 24/239 (10%)
Query: 15 TVHYVWFDEEPPEDVY------FEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
V YVW++E + Y + L R + V + P + + + D
Sbjct: 134 YVKYVWYEECDEFETYDKITNINQSLLR-GGHEYCVFYSFNPPESQRNWCNRQVLVKRDD 192
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIFPIVEEDIVI 124
V T + P EQ + + + GE + G+G + I
Sbjct: 193 TYVSHTTYLQAPPEWLGEQFLIEAEHTKKTNIEKYNHDYLGE-VTGTGSEVFTNLDIREI 251
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+I G+DFG+ P A +++ +++ + V +K
Sbjct: 252 TKEEIDVFDRLKFGLDFGYAGDPLAFIKANYDKTRRRLFIFDEVYGTRLSNADAVKLIKE 311
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
++ + D ++ ++ G+++ G + V+ GI + D
Sbjct: 312 ------INPLNNQVTADSAEPRTINE-FKLLGLRITGA----KKGPDSVKNGIKFLQDL 359
>gi|296330713|ref|ZP_06873190.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305673970|ref|YP_003865642.1| phage terminase large subunit; PBSZ phage [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296152177|gb|EFG93049.1| PBSX defective prophage terminase (large subunit) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412214|gb|ADM37333.1| phage terminase (large subunit); PBSZ phage [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 433
Score = 91.8 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGR--SPIIEHYLSASSS---- 67
+ +W +E E + + E + R+ + + + T + H+
Sbjct: 116 ISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWTYRHFFRDERKKRFV 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T N+ + K++ + Y KG +
Sbjct: 176 LDDRELYEKRTIVKGDTYYHHSTANDNLFLPKSYVKQLDGLKVYDPDLYRIARKGRFGVN 235
Query: 111 SGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
R+ P E V + + GMDFG+ A L + + +Y+
Sbjct: 236 GIRVLPQFEVLPHGQVKERIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L+ + + ++ D + + +R+QG +M+
Sbjct: 296 YYQNKMTDDRTAEELREF------IDTQELIKADSAEPKSI-QYFRQQGFRMVGARK 345
>gi|237745726|ref|ZP_04576206.1| phage terminase [Oxalobacter formigenes HOxBLS]
gi|229377077|gb|EEO27168.1| phage terminase [Oxalobacter formigenes HOxBLS]
Length = 414
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 23/242 (9%)
Query: 6 QGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
QG + + W +E E+ + + I + ++ P+ P + +++
Sbjct: 121 QGIKSTEG--IDICWVEEGQTVSEESWSILIPTIRKENSEIWISWNPIDEDGPTYKRFVT 178
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEED 121
A D + + P + + RK + E G+P+ S + +
Sbjct: 179 APPPDCYNAEVNYYDNPWFPDVLRKEMEYLKATDYAAYEHVWLGKPLTVSDAVIFAGKYT 238
Query: 122 IVINSLDIPEHWVQ-IGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+ D+ E + G DFG+ P A D +Y+
Sbjct: 239 VETFPDDLWEKADRLFFGADFGFARDPSALVRCFIF--GDCLYIDYEAYGVGV------- 289
Query: 180 ALKSWGKWLPWAWPHDGL--QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
+ + + D E +S ++ G + VE GI+
Sbjct: 290 EITELPQLYDSVPGARKWPIKADSARPETISYLHKEHGFNISAAD----KWQGSVEDGIA 345
Query: 238 DM 239
+
Sbjct: 346 HL 347
>gi|240851102|ref|YP_002972504.1| phage terminase large subunit [Bartonella grahamii as4aup]
gi|240268225|gb|ACS51813.1| phage terminase large subunit [Bartonella grahamii as4aup]
Length = 453
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T P +P+ + + + + +
Sbjct: 137 LCWVDEAEPVTETAWQTLIPTLREEGKDWNAELWVTWNPCYENAPVEKRFRNVDNPHIKG 196
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + P + E+ + +D + +GE + + +E I
Sbjct: 197 AEINWRDNPQFPEKLNRDRMDDLQQRPEQYNHIWEGEYLQAVQGAYYQKCLLEAEMEGRI 256
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q HV +
Sbjct: 257 TTVPRDPLMQVRIFWDIGGTGAKADATALWVAQFIGREIRVLDYYEAQGQPLSEHVGWVF 316
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G+ V+ I +
Sbjct: 317 QRGYEKALMVLPHDGATKDRVYNVSFESALQQAGFQTK---VIPNQGTGAVKMRIEAVRR 373
Query: 242 RM 243
Sbjct: 374 LF 375
>gi|119953777|ref|YP_950582.1| terminase large subunit [Streptococcus phage SMP]
gi|118430589|gb|ABK91913.1| terminase large subunit [Streptococcus phage SMP]
Length = 432
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 30/250 (12%)
Query: 16 VHYVWFDEE------PPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLSAS- 65
+ ++W +E + E + +T+T P R + +
Sbjct: 130 LSWLWLEEAYQVENQDKFETLVESIRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDEDT 189
Query: 66 -SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDI 122
D T ++Q+ R D + + R A G+ + G +F E
Sbjct: 190 RKKDVFADTTTYRVNEWLDQQDIDRYEDLWRTNPRRAAVVANGDWGVAEGLVFENYEVKD 249
Query: 123 VINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
I G+DFG+ P L + + +++ + T +
Sbjct: 250 FDIVSTIKRIGETTAGLDFGFTHDPTTFPRLAVDLEKKELWIYAEHYEHAMTTDDIFKMI 309
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
Q L A+ + +G++ G + AGI M
Sbjct: 310 VDADMQNAVITADSAEQR-------LIAELQAKGIR---RLVPSIKGKGSINAGIDFMKQ 359
Query: 242 RMRSGRWKVF 251
+K++
Sbjct: 360 ------FKIY 363
>gi|291044162|ref|ZP_06569878.1| phage terminase [Neisseria gonorrhoeae DGI2]
gi|291012625|gb|EFE04614.1| phage terminase [Neisseria gonorrhoeae DGI2]
Length = 426
Score = 91.8 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 113 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 170
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 171 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 230
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 231 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 288
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 289 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 343
Query: 236 ISDMLDRM 243
I
Sbjct: 344 IRAARMLF 351
>gi|240127880|ref|ZP_04740541.1| putative phage associated protein [Neisseria gonorrhoeae
SK-93-1035]
Length = 424
Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|167856075|ref|ZP_02478817.1| phage terminase, large subunit, PBSX family: protein [Haemophilus
parasuis 29755]
gi|167852772|gb|EDS24044.1| phage terminase, large subunit, PBSX family: protein [Haemophilus
parasuis 29755]
Length = 321
Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 70/230 (30%), Gaps = 17/230 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + L + + + LT P K S + ++ M
Sbjct: 41 LAWIDEAESVSEMAWRKLLPTVRESGSEIWLTWNPEKKGSATDLRFRQYQDESMAIVEMN 100
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + EQER R +G+ L + + +P+
Sbjct: 101 YSDNPWFPDVLEQERLRDKARLDDATYRWIWEGDY-LEESEAQVFRGKYQELEFKPLPDF 159
Query: 133 WVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
G+DFG+ P AA +D +Y+ L+ +
Sbjct: 160 EGPYHGLDFGFAQDPTAAVKCWVFKD--ELYIEYEAGKVGLELDDTATFLQKGIASIEQY 217
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
++ D E +S +R G+ P VE GI+ +
Sbjct: 218 V----IRADSARPESIS-YLKRHGL---PRIDGVSKWKGSVEDGIAHIKS 259
>gi|59801465|ref|YP_208177.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
gi|260440843|ref|ZP_05794659.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
gi|59718360|gb|AAW89765.1| hypothetical protein, putative phage associated protein [Neisseria
gonorrhoeae FA 1090]
Length = 424
Score = 91.8 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|194098237|ref|YP_002001293.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
gi|240125445|ref|ZP_04738331.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679]
gi|268684040|ref|ZP_06150902.1| phage terminase [Neisseria gonorrhoeae SK-92-679]
gi|193933527|gb|ACF29351.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
gi|268624324|gb|EEZ56724.1| phage terminase [Neisseria gonorrhoeae SK-92-679]
Length = 424
Score = 91.4 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|302541176|ref|ZP_07293518.1| prophage terminase large subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302458794|gb|EFL21887.1| prophage terminase large subunit [Streptomyces himastatinicus ATCC
53653]
Length = 270
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 18/214 (8%)
Query: 44 VTLTLTPLKGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR 102
+ T P R + Y+ + + + +++ P + + + Y R
Sbjct: 1 MYATTNPDSPRHWLKAGYIDRAHELNLRAWHFKLSDNPSLSPEYVADLAAEYVGLWRRRM 60
Query: 103 TKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
G ++ G I+ + +E + + ++P+ G D+G +PF+A L D D +Y
Sbjct: 61 IDGAWVVAEGAIYDMWDEGRHVVA-ELPDVRRYWLGCDYGTTNPFSAILLGEGVD-DRLY 118
Query: 163 VVKNYR------CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
V +R R T + AA+++W L S S Q + G
Sbjct: 119 VAAEWRHDSRATHRSMTDAQYSAAVRAWLADLGIVPE---WTFIDPSAASFSTQMWQDGH 175
Query: 217 KMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
L SN V GI + + +GR V
Sbjct: 176 AGLAR------ASNDVADGIRSVSSLLAAGRLLV 203
>gi|220903993|ref|YP_002479305.1| hypothetical protein Ddes_0719 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868292|gb|ACL48627.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 461
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/279 (10%), Positives = 64/279 (22%), Gaps = 49/279 (17%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + + DE P V+ + + QG TP + + + +
Sbjct: 108 NAQALRGLYLDDLVLDEPADMPRQVWTQIFRPMLADRQGRALFCGTPQGTDNLLYDAWEQ 167
Query: 64 ASSSD---RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV-- 118
A + R ++T + QE + E + +
Sbjct: 168 AGADSSGLWSRFRFPASQTGYLPAQELAAARRAMDEAEYLQEFECSFAAAVRGSYYAPLL 227
Query: 119 ---EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ + I ++ D G A V Y +
Sbjct: 228 DAADREGRIRTVPHAPELPVHTAWDLGMDDATAIWFFQVEPSGQ-WRFVDYYEASGEGLA 286
Query: 176 FHVAALKSWG--------KWLP-----------------------WAWPHDGLQHDKRSG 204
+ L + +P PHD + +G
Sbjct: 287 HYAHVLARKARPAGQQALEDIPAQQDGQNELMNRNFTGRGFSYGLHIAPHDIRVRELGTG 346
Query: 205 EQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ + G++ A + GI + +
Sbjct: 347 QSRWESAAQLGIRFTLAPAL------SLADGIDAVRRHL 379
>gi|163851850|ref|YP_001639893.1| terminase large subunit [Methylobacterium extorquens PA1]
gi|163663455|gb|ABY30822.1| terminase large subunit [Methylobacterium extorquens PA1]
Length = 342
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 59/216 (27%), Gaps = 12/216 (5%)
Query: 16 VHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ W +E + + + I + ++ P + ++ + +V++
Sbjct: 112 IDVCWVEEARTVSKSSWDVLIPTIRKEGSEIWISFNPELEEDETYKRFVKNPPTGAKVVK 171
Query: 74 MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV-------INS 126
+ + P + + ++ +D T + I +I+
Sbjct: 172 IGWQDNPWFPDVLKQEALDLKARDPAAYLTVWDGHCKVVLDGAIYANEIMAATEANRFIR 231
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ D G A ++ Y+ R ++ L++
Sbjct: 232 VPYDGTKPVHTFWDLGRADMTAIWFAQV--VGFEFRIIDYYQNRGHALGHYLKHLQARPY 289
Query: 187 WLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
W PHD S ++ Q G +
Sbjct: 290 VYGDHWLPHDATNELLGSERTIAQQMESAGFTVSGA 325
>gi|116623201|ref|YP_825357.1| hypothetical protein Acid_4108 [Candidatus Solibacter usitatus
Ellin6076]
gi|116226363|gb|ABJ85072.1| conserved hypothetical protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 436
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 67/250 (26%), Gaps = 16/250 (6%)
Query: 9 DKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLT--PLKGRSPIIEHYLSA 64
++ + + + DE ++ + R+ + KG + +++
Sbjct: 119 ERLRGTNLAWFGLDELTYTQQEAWLRLEGRLRDPKATQLCGFAVWTPKGFDWVYRKFITD 178
Query: 65 SSSDRQVIRMTINETPHYNE---QERKRIIDSYPLHEREARTKGEPILGSGR-IFPIVEE 120
I+ E H R+ DSY + G + G ++ +
Sbjct: 179 PVPGYGAIQARPFENRHLLAKVGDFYDRLKDSYDERFYQQEVLGNYLSMQGGRVYGAFDR 238
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
I S+ + + +DF + + V+ R T
Sbjct: 239 TTHIQSVRPNPYLPLLWALDFNVDPMSSVI---VQVVKGEVRVLDEIVIRRATTGQACEE 295
Query: 181 LKSWGKWLP---WAWPHDGLQHDKRSGEQLSAQYRR--QGMKMLPECATFDDGSNGVEAG 235
P + + +G R +P + GV
Sbjct: 296 FLKRYPTHPKGVLIYGDASGSAQQTTGATDYQMVREYFAVNSNVPVQYKVPKSNPGVRDR 355
Query: 236 ISDMLDRMRS 245
++ M ++RS
Sbjct: 356 VNLMNRQLRS 365
>gi|240112597|ref|ZP_04727087.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
gi|268598667|ref|ZP_06132834.1| phage terminase [Neisseria gonorrhoeae MS11]
gi|268582798|gb|EEZ47474.1| phage terminase [Neisseria gonorrhoeae MS11]
Length = 424
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGNIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNAAGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|293399332|ref|ZP_06643497.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae
F62]
gi|291610746|gb|EFF39856.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae
F62]
Length = 426
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 113 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 170
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 171 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 230
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 231 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 288
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 289 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNAAGIEEG 343
Query: 236 ISDMLDRM 243
I
Sbjct: 344 IRAARMLF 351
>gi|268594527|ref|ZP_06128694.1| phage terminase [Neisseria gonorrhoeae 35/02]
gi|268547916|gb|EEZ43334.1| phage terminase [Neisseria gonorrhoeae 35/02]
Length = 426
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 113 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 170
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 171 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 230
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 231 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLMSVRIIGYIEDTHRTLDW 288
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 289 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 343
Query: 236 ISDMLDRM 243
I
Sbjct: 344 IRAARMLF 351
>gi|239998675|ref|ZP_04718599.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
gi|317163958|gb|ADV07499.1| putative phage associated protein [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 424
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLMSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|240014419|ref|ZP_04721332.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
gi|240016852|ref|ZP_04723392.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
gi|240120865|ref|ZP_04733827.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
gi|254493400|ref|ZP_05106571.1| phage terminase [Neisseria gonorrhoeae 1291]
gi|226512440|gb|EEH61785.1| phage terminase [Neisseria gonorrhoeae 1291]
Length = 424
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 111 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 168
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 169 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 228
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 229 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 286
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 287 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNAAGIEEG 341
Query: 236 ISDMLDRM 243
I
Sbjct: 342 IRAARMLF 349
>gi|319899324|ref|YP_004159421.1| hypothetical protein BARCL_1179 [Bartonella clarridgeiae 73]
gi|319403292|emb|CBI76851.1| phage-related protein [Bartonella clarridgeiae 73]
Length = 442
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P D ++ L +G + +T P + + + + + + +
Sbjct: 125 LCWVDEAEPVTDAAWQILIPTLREEGKDWHSELWVTWNPCRENAAVEKRFRFTKDPNVKG 184
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + + + + + +GE + + E I
Sbjct: 185 VEINWRDNPKFPAKLNRDRKADLEQRPEQYQYIWEGEYLQAMQGAYYQKLLLEAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q H+ +
Sbjct: 245 TKVPRDPLIQIKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWIC 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 305 QKGYEKALMVLPHDGATKDRVYNVSFESALQQAGFRTQ---IIPNQGIGAVKMRIEAVRR 361
Query: 242 RM 243
Sbjct: 362 LF 363
>gi|268686275|ref|ZP_06153137.1| phage terminase [Neisseria gonorrhoeae SK-93-1035]
gi|268626559|gb|EEZ58959.1| phage terminase [Neisseria gonorrhoeae SK-93-1035]
Length = 417
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 20/248 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ + VW +E + I + +TL P +++
Sbjct: 104 SIKSFEG--IDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAM 161
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---DSYPLHEREARTKGEPILGSGRIFPIVEED 121
S D + + + P + E + + S + +G P + S E
Sbjct: 162 PSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQ 221
Query: 122 IVINS-----LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+S + D GW+ A + RD + ++ +T +
Sbjct: 222 DAFHSGRVTLVPYDSSLPVHTVWDLGWND--AMTIGLVQRDLTSVRIIGYIEDTHRTLDW 279
Query: 177 HVAALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+VA L+ W PHDG + ++G+ G + F + G+E G
Sbjct: 280 YVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLG-----RKSVFVQNATGIEEG 334
Query: 236 ISDMLDRM 243
I
Sbjct: 335 IRAARMLF 342
>gi|208429857|ref|YP_002265410.1| large terminase [Clostridium phage 39-O]
gi|190683340|gb|ACE81984.1| large terminase [Clostridium phage 39-O]
Length = 425
Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 20/226 (8%)
Query: 16 VHYVWFDEEPPEDVYFEGLTRINA-----TQGLVTLTLTPLKGRSPIIEHYLSASSSDRQ 70
+ VW++E + E + + V T P K ++ + DR
Sbjct: 134 IGIVWYEELDQFNGMEEIRSMTQSFIRKNGDNWVFYTFNPPKSKNNWVNEEQLIDREDRL 193
Query: 71 VIRMTINETP--HYNEQERKRIIDSYP--LHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ T P +Q + GE + G+G I
Sbjct: 194 IHHSTYLTVPSDWLGQQFIIEAEHLKNVKEEAYKHEYLGE-VTGTGGNVFDNVIIREITK 252
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+I G+DFG+ A + ++ +Y++ + + +
Sbjct: 253 EEINNMEEFEYGVDFGFSIDPA-TWCKIHYKNNKLYIIDEIYEQGLSNKKLTDKILEKEP 311
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ + D + +S R G+ M G +
Sbjct: 312 NIY----KKPIVADSADPKSISE-MRGYGLNMQKA----KKGPDSR 348
>gi|319406198|emb|CBI79835.1| phage-related protein [Bartonella sp. AR 15-3]
Length = 442
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P D ++ L +G + +T P + + + + + + +
Sbjct: 125 LCWVDEAEPVTDAAWQVLIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTKDPNIKG 184
Query: 72 IRMTINETPHYNEQERKR--IIDSYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + + + + + +GE +L + E I
Sbjct: 185 VEINWRDNPKFPAKLNRDRTADLEQRPEQYQHIWEGEYLLAMQGAYYQKLLLEAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q H+ +
Sbjct: 245 TTVPRDPLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWIC 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 305 HKGYEKALMVLPHDGATKDRVYNVSFESALQQAGFRTQ---IIPNQGVGAVKMRIEAVRR 361
Query: 242 RM 243
Sbjct: 362 LF 363
>gi|319404714|emb|CBI78316.1| phage-related protein [Bartonella rochalimae ATCC BAA-1498]
Length = 442
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P D ++ L +G + +T P + + + + + + +
Sbjct: 125 LCWVDEAEPVTDAAWQILIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTKDPNIKG 184
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + + + + + +GE + + E I
Sbjct: 185 VEINWRDNPKFPAKLNRDRQADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q H+ +
Sbjct: 245 TTVPRDPLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWVC 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 305 QKGYEKALMVLPHDGATKDRVYNVSFESALQQAGFRTQ---IIPNQGVGAVKMRIEAVRR 361
Query: 242 RM 243
Sbjct: 362 LF 363
>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
Length = 416
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/258 (12%), Positives = 75/258 (29%), Gaps = 23/258 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP------PEDVYFEGL--TRINATQ--GLVTLTLTPLKGRSP 56
+ DE + + + + R+ + +T TP G
Sbjct: 110 DPGGIVGFKIARALVDEIDILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPE-GFRF 168
Query: 57 IIEHYLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRI 114
+ + + S+ +++ + E +++ YP +A GE + L SG +
Sbjct: 169 VYDSFKREPKSNYSMVQASTYENEAFLPPDYISTLLEDYPEELIKAYLMGEFVNLTSGTV 228
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + ++ I G DF + + + + + + V + + TP
Sbjct: 229 YRSYDRLRHRSTQSIQPREPLHIGQDFNVGNMASVVFV---QRGEDWHAVDELQGLQDTP 285
Query: 175 IFHVAALKSWGKWLPWAWPHDGL--QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ +P + + R+ G + V
Sbjct: 286 HLIEVLCDRYEGHHLTIYPDASGSSRKTVNASTSDIELLRKAGHAIRAPSTNP-----AV 340
Query: 233 EAGISDMLDRMRSGRWKV 250
+ I + +GR V
Sbjct: 341 KDRILAVNTAFENGRLFV 358
>gi|326693191|ref|ZP_08230196.1| phage terminase, large subunit, PBSX family [Leuconostoc argentinum
KCTC 3773]
Length = 430
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 25/236 (10%)
Query: 20 WFDEE------PPEDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSAS--SSDR 69
W++E E + G +T P R + + ++
Sbjct: 132 WWEEAYELKSDDSFQTVIESMRGELPIGGFYQHVITFNPWSDRHWLKREFFDVDTRRNNT 191
Query: 70 QVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVINSL 127
T H N+ + + + + A+ G+ + G +F + E +
Sbjct: 192 LAFTTTYKNNHHLNDDFIEAMKEMVVRNPNRAKVAVFGDWGISEGLVFDGLFEQRDFSME 251
Query: 128 DIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL-KSWG 185
+I + + G+DFG+ H P A + ++ + V+YV + + AL +
Sbjct: 252 EIAK-LPKSIGLDFGFKHDPTAGEFMAIDQTNRVVYVYDEFYQQGMLTQMIAQALAQHKA 310
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
LP D + G+ P T G + V G+ M
Sbjct: 311 YGLPI-------TADSAEQRLTTELASVYGV---PNLRTAGKGKDSVIQGVQYMQS 356
>gi|260683200|ref|YP_003214485.1| phage terminase large subunit [Clostridium difficile CD196]
gi|260686796|ref|YP_003217929.1| phage terminase large subunit [Clostridium difficile R20291]
gi|260209363|emb|CBA62799.1| phage terminase large subunit [Clostridium difficile CD196]
gi|260212812|emb|CBE03985.1| phage terminase large subunit [Clostridium difficile R20291]
Length = 417
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 59/237 (24%), Gaps = 22/237 (9%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 133 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 192
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I
Sbjct: 193 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFP 252
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG- 185
+ DFG++H A +Y+ E + S G
Sbjct: 253 TEFEYFDNMRLSQDFGFNHANAILR--IGFKDGELYICNEIYVHEMDTSEIIKIANSRGL 310
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + + ++ G K G V+A I +
Sbjct: 311 EKTLFMYCDSAE-------PDRIKMWKSAGYKA----KGVKKGPGSVKAQIDYLKQL 356
>gi|291335343|gb|ADD94958.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C148]
Length = 234
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 10/192 (5%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++ V DE +V+FE + + QG TP S + +
Sbjct: 44 NAMALRGRSLSGVVLDEAAFMDAEVWFEVIRPALADKQGWALFISTPDGTASWFYDLWCY 103
Query: 64 ASSS---DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + T E + ++E + + +G + +
Sbjct: 104 CEDDPTNEWKRWCYTTIEGGNVPQEEVEAARAQLDPRTFRQEFEASFENLTGLVAISFSD 163
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR-EQTPIFHVA 179
D + + G+DF + +D D +YV T
Sbjct: 164 DNISTDAKDISIQPLLLGVDFNVDPMSGICAV---KDKDTLYVFDEIMLTGGATTWDFAE 220
Query: 180 ALKSWGKWLPWA 191
+
Sbjct: 221 EVTHRYGVDRRV 232
>gi|254975152|ref|ZP_05271624.1| putative phage terminase, large subunit [Clostridium difficile
QCD-66c26]
gi|255516959|ref|ZP_05384635.1| putative phage terminase, large subunit [Clostridium difficile
QCD-97b34]
gi|255650061|ref|ZP_05396963.1| putative phage terminase, large subunit [Clostridium difficile
QCD-37x79]
gi|306519596|ref|ZP_07405943.1| phage terminase large subunit [Clostridium difficile QCD-32g58]
Length = 413
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 59/237 (24%), Gaps = 22/237 (9%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 129 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 188
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I
Sbjct: 189 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFP 248
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG- 185
+ DFG++H A +Y+ E + S G
Sbjct: 249 TEFEYFDNMRLSQDFGFNHANAILR--IGFKDGELYICNEIYVHEMDTSEIIKIANSRGL 306
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + + ++ G K G V+A I +
Sbjct: 307 EKTLFMYCDSAE-------PDRIKMWKSAGYKA----KGVKKGPGSVKAQIDYLKQL 352
>gi|255092542|ref|ZP_05322020.1| phage terminase large subunit [Clostridium difficile CIP 107932]
gi|255314279|ref|ZP_05355862.1| phage terminase large subunit [Clostridium difficile QCD-76w55]
Length = 416
Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 59/237 (24%), Gaps = 22/237 (9%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 132 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 191
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I
Sbjct: 192 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFP 251
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG- 185
+ DFG++H A +Y+ E + S G
Sbjct: 252 TEFEYFDNMRLSQDFGFNHANAILR--IGFKDGELYICNEIYVHEMDTSEIIKIANSRGL 309
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + + ++ G K G V+A I +
Sbjct: 310 EKTLFMYCDSAE-------PDRIKMWKSAGYKA----KGVKKGPGSVKAQIDYLKQL 355
>gi|196047612|ref|ZP_03114820.1| phage terminase large subunit [Bacillus cereus 03BB108]
gi|196021583|gb|EDX60282.1| phage terminase large subunit [Bacillus cereus 03BB108]
Length = 285
Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 9/222 (4%)
Query: 28 DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV-IRMTINETPHYNEQE 86
+ R + V P +L + + IR T+++ +E+
Sbjct: 4 SFVNQATGRCSVEGSKVWFNCNPGGPYHWFKTEWLDKAKEKNLLHIRFTMDDNLSLSEKV 63
Query: 87 RKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP 146
++R Y + G SG IF + +ED E+ D+G +
Sbjct: 64 KQRYYKMYSGVFFKRYILGLWAAASGLIFDMFDEDKHKVPTIEREYVEYFVSCDYGTQNA 123
Query: 147 FAAGHLV--WNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG 204
G + +V Y VK YR + + + + + D
Sbjct: 124 MVYGLWGKCIEKGEEVWYKVKEYRYSGRETEKQKTDQEYYEDFEKFV--GDLPIRGTVVD 181
Query: 205 EQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSG 246
++ ++ N V+ GI ++ + +G
Sbjct: 182 PSAASFIAL----LVRNKRKVYKARNNVKEGIGNVGVALNTG 219
>gi|229037838|ref|ZP_04189636.1| Phage terminase large subunit [Bacillus cereus AH1271]
gi|228727460|gb|EEL78638.1| Phage terminase large subunit [Bacillus cereus AH1271]
Length = 416
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 65/236 (27%), Gaps = 20/236 (8%)
Query: 15 TVHYVWFDE-----EPPEDVYFEGLTRINATQG---LVTLTLTPLKGRSPIIEHYLSASS 66
+ ++W +E E D+ + L I +T T P+ I + Y
Sbjct: 125 KLTWIWIEESTELKENDIDILDDRLRGILPNPNLYYQITFTFNPVSSTHWIKKKYFDIEH 184
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T +E +R++ + G G + I
Sbjct: 185 PDIFTHHSTYLTNRFIDEAYHRRMMLRKAQDPEGYQIYGLGEWGEIGGLILKNYRIHDFD 244
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
DFG++H A W +D ++ + Y + T A K
Sbjct: 245 TSFERFDSMNHAQDFGFNHANAILTGGW-KDGELYICNEIYVHEKDTGEIIEIADKQGIN 303
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ +R+ G K +P N V+A I +
Sbjct: 304 KRLMMYCDSAE-------PDRIKTWRKAGYKAVP----VVKNPNSVKAQIDYLKTL 348
>gi|160897385|ref|YP_001562967.1| PBSX family phage terminase large subunit [Delftia acidovorans
SPH-1]
gi|160362969|gb|ABX34582.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
SPH-1]
Length = 433
Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/244 (13%), Positives = 68/244 (27%), Gaps = 19/244 (7%)
Query: 18 YVWFDEEPPE--DVYFEGLTRINATQ----GLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + + + + + +T P + +P+ + + +S +
Sbjct: 125 LCWVDEAEPVTDEAWTTLIPTLREEGTDWNAELWVTWNPKRKSAPVEKRFKGSSDPRMKY 184
Query: 72 IRMTINETPHYNE--QERKRIIDSYPLHEREARTKGEPILGSGRIFPIV-------EEDI 122
+R + P + + + + + +G+ + + I
Sbjct: 185 VRCNWKDNPKFPALLERVRLRDLAERPEQYAHIWEGDYATVIEGAYFASHIVKARQDNRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A + I V+ Y Q H+ ++
Sbjct: 245 GRVPADPLMTLRAFVDIGGTGARADAFAMWIAQFVGKEIRVLDYYEQVGQPLSSHLNWMR 304
Query: 183 SWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G W PHDG DK + R+ G + + G +A I
Sbjct: 305 EKGYDKAQIWLPHDGATQDKVHDVSYESALRQAGYTVT---VVPNQGKGAAKARIEAGRR 361
Query: 242 RMRS 245
S
Sbjct: 362 LFGS 365
>gi|167462274|ref|ZP_02327363.1| hypothetical protein Plarl_06915 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382817|ref|ZP_08056660.1| phage-related terminase-like protein large subunit [Paenibacillus
larvae subsp. larvae B-3650]
gi|321153200|gb|EFX45647.1| phage-related terminase-like protein large subunit [Paenibacillus
larvae subsp. larvae B-3650]
Length = 423
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSASSS---- 67
V VW +E E + + E L R+ + L+ P+ + +H+
Sbjct: 116 VSIVWIEECSEVKYEGFKELLGRLRHPALDLHMLLSTNPVGEDNWTFKHFFKDELKNHIV 175
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
D T + + ++ + +Y +G +
Sbjct: 176 LEDTDLYEKRTIVKNDTFYHHSTAEDNLFLPKSYVAQLDELKAYDPDLYRIAREGRFGVN 235
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
R+ P E ++ + GMDFG+ A L + + ++Y+
Sbjct: 236 GVRVLPQFEVASHEEVIEAISRIRKPIERTGMDFGFEDSYNAVVRLAVDHEQKILYIYWE 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T AL+ + + + ++ D + + +R++G M P
Sbjct: 296 YYKNQMTDDRTAEALQEFAR------TKELIKADSAEPKTIR-YFRQKGFNMRPAKK 345
>gi|257891069|ref|ZP_05670722.1| terminase large subunit [Enterococcus faecium 1,231,410]
gi|257893878|ref|ZP_05673531.1| terminase large subunit [Enterococcus faecium 1,231,408]
gi|260558861|ref|ZP_05831050.1| terminase large subunit [Enterococcus faecium C68]
gi|257827429|gb|EEV54055.1| terminase large subunit [Enterococcus faecium 1,231,410]
gi|257830257|gb|EEV56864.1| terminase large subunit [Enterococcus faecium 1,231,408]
gi|260075320|gb|EEW63633.1| terminase large subunit [Enterococcus faecium C68]
Length = 432
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/258 (11%), Positives = 71/258 (27%), Gaps = 30/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 111 AQNPERIKSLKDSKFPFAIGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNP 170
Query: 51 L-KGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ + + T + P +++ + + + R A + +
Sbjct: 171 PKRKQSWVNKKYETSFQPKNTFIHHSTYKDNPFISKEFLSEVEAARARNPRRAEWEYDGK 230
Query: 109 LGSGRIFPIVEEDIV---INSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
+ P I I + G+D+G+ P A +++ + IY +
Sbjct: 231 AIGSGVVPFDNLRIEAGSITDEMVANFDNIRQGLDYGYATDPLAFVRWHYDKKRNCIYAI 290
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + +KS + + + +
Sbjct: 291 DELYEVKCSNRRAAQWIKSNKYHYQDIIAE-------VEPKSNAEMRNEHDIS---KIRQ 340
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 341 VTKGPDSVEYGEKWLDDL 358
>gi|319407675|emb|CBI81323.1| phage-related protein [Bartonella sp. 1-1C]
Length = 442
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P D ++ L +G + +T P + + + + + + +
Sbjct: 125 LCWVDEAEPVTDAAWQILIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTEDPNIKG 184
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + + + + + +GE + + E I
Sbjct: 185 VEINWRDNPKFPAKLNRDRKADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
I D + A V I V+ Y + Q H+ +
Sbjct: 245 TIVPRDPLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWVC 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 305 QKGYEKALMVLPHDGATKDRVYNVSFESALQQAGFRTQ---VIPNQGVGAVKMRIEAVRR 361
Query: 242 RM 243
Sbjct: 362 LF 363
>gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU]
Length = 460
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 23/259 (8%)
Query: 10 KWQSNTVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + DE + Y + L R+ + ++ +G + + ++S
Sbjct: 146 RLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRTGNVRQMVIVSTPEGFRAMYQIFIS 205
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDI 122
+ +++I+ + + + + YP EA GE + L G ++ +
Sbjct: 206 EADDQKRLIKARTTDNHYLPQDYIDTLRAQYPPELIEAYLNGEFVNLTGGAVYRNFSRTL 265
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS-DVIYVVKNYRCREQTPIFHVAAL 181
+ + GMDF A ++ D + +++V + T A
Sbjct: 266 NNCDTVAEDDDTLMIGMDFNVGQMAGAVYVQRIADGVEEMHLVDEFCGLLDTDAMIDAIK 325
Query: 182 KSWGKW-----LPWAWPHDGLQHDKR-SGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + G + A G + V
Sbjct: 326 ERYPDHHARGLIEIFPDSSGKNRKTTNANTSDIAMLEDAGFTVSYNSVNP-----AVRDR 380
Query: 236 ISDMLDRMRSG----RWKV 250
++D+ + +G R KV
Sbjct: 381 VNDVNGMILNGKGQRRLKV 399
>gi|126700540|ref|YP_001089437.1| phage terminase large subunit [Clostridium difficile 630]
Length = 417
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 60/236 (25%), Gaps = 20/236 (8%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 133 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 192
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I
Sbjct: 193 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFP 252
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ DFG++H +Y+ E + S G
Sbjct: 253 TEFEYFDNMRLSQDFGFNHANVVLR--IGFKDGELYICNEIYVHEMDTSEIIKIANSRGL 310
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D +++ ++ G K G V+A I +
Sbjct: 311 EKTLF-----MYCDSAEPDRIK-MWKSAGYKA----KGVKKGPGSVKAQIDYLKQL 356
>gi|126698524|ref|YP_001087421.1| putative phage terminase, large subunit [Clostridium difficile 630]
gi|115249961|emb|CAJ67781.1| putative phage terminase, large subunit [Clostridium difficile]
gi|328887758|emb|CAJ69813.2| putative phage terminase large subunit [Clostridium difficile]
Length = 413
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 60/236 (25%), Gaps = 20/236 (8%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 129 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 188
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I
Sbjct: 189 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFP 248
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ DFG++H +Y+ E + S G
Sbjct: 249 TEFEYFDNMRLSQDFGFNHANVVLR--IGFKDGELYICNEIYVHEMDTSEIIKIANSRGL 306
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D +++ ++ G K G V+A I +
Sbjct: 307 EKTLF-----MYCDSAEPDRIK-MWKSAGYKA----KGVKKGPGSVKAQIDYLKQL 352
>gi|192291432|ref|YP_001992037.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas
palustris TIE-1]
gi|192285181|gb|ACF01562.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas
palustris TIE-1]
Length = 421
Score = 89.5 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 12/218 (5%)
Query: 14 NTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
+ +W DE P + + + + + LT P + S + + + ++
Sbjct: 101 ARIRLLWVDEAEPVSDEAWNITIPTVREEGSEIWLTWNPDRKASATNKRFRENPPAGAKI 160
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P++ E + +D + + +GE + + I
Sbjct: 161 VELNWRDNPYFPEILNRTRLDDKANRPDQYGWVWEGEYRSVVAGAYYAKALTQAKEQGRI 220
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
LD + AA + I V+ Y + Q HVA ++
Sbjct: 221 TFVPLDPLMQVRAYLDIGGAGAKADAAAIWIVQFVGQRINVLDYYEAQGQPLATHVAWMR 280
Query: 183 SWG-KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
G PHDG Q DK + R G ++
Sbjct: 281 ERGWGKALVVLPHDGAQTDKVHATSYESALREAGFDVI 318
>gi|237745263|ref|ZP_04575744.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229432492|gb|EEO42704.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 425
Score = 89.1 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 28/238 (11%)
Query: 20 WFDEEPPE------DVYFEGLTRINATQG---LVTLTLTPLKGRSPIIEH---YLSASSS 67
WF+E ++ + + R + P K + + Y
Sbjct: 139 WFEELAEFKNEDEVEMVLDSIYRGKLKDNLRYKGFFSYNPPKMKHNWVNKKYEYTFKEDD 198
Query: 68 DRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ V T + P ++ KR + + GEP +G+G + E I+
Sbjct: 199 EIFVHHSTYLDNPFISDDFVKRAEAVKLNNPMKYKHTYLGEP-IGNGIVPFDNLEIRTIS 257
Query: 126 SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ +I G+D+G+ P A +++ +IY + + + S
Sbjct: 258 NEEIKGLDRFRNGVDWGYGVDPMAFVRWGYDKKKRIIYAIDEFFGVGIKNRELATFIISK 317
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + D + + R + + G+ VE G + D
Sbjct: 318 NY-------DELVMCDSAEPKSIDE-LREYDI----SASGAKKGAGSVEYGEKWLADL 363
>gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF]
gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS]
Length = 460
Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 23/259 (8%)
Query: 10 KWQSNTVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + DE + Y + L R+ + ++ +G + + ++S
Sbjct: 146 RLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRTGNVRQMVIVSTPEGFRAMYQIFIS 205
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDI 122
+ +++I+ + + + + YP EA GE + L G ++ +
Sbjct: 206 EADDQKRLIKARTTDNHYLPQDYIDTLRAQYPPELIEAYLNGEFVNLTGGAVYRNFSRTL 265
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS-DVIYVVKNYRCREQTPIFHVAAL 181
+ + GMDF A ++ D + +++V + T A
Sbjct: 266 NNCDTVAEDDDTLMIGMDFNVGQMAGAVYVQRIADGVEEMHLVDEFCGLLDTDAMIDAIK 325
Query: 182 KSWGKW-----LPWAWPHDGLQHDKR-SGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + G + A G + V
Sbjct: 326 ERYPDHHARGLIEIFPDSSGKNRKTTNANTSDIAMLEDAGFTVSYNSVNP-----AVRDR 380
Query: 236 ISDMLDRMRSG----RWKV 250
++D+ + +G R KV
Sbjct: 381 VNDVNGMILNGKGQRRLKV 399
>gi|241895598|ref|ZP_04782894.1| large subunit terminase [Weissella paramesenteroides ATCC 33313]
gi|241871176|gb|EER74927.1| large subunit terminase [Weissella paramesenteroides ATCC 33313]
Length = 429
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 23/235 (9%)
Query: 20 WFDEEP---PEDVYFEGL--TRINATQGLVT---LTLTPLKGRSPIIEHYLSASSSDRQV 71
W++E ++ + + R G +T P R + + A + V
Sbjct: 131 WWEEAYELKSDESFQTVIESMRGELPAGGFYQHVITFNPWSDRHWLKREFFDADTRRNHV 190
Query: 72 --IRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVINSL 127
T H N+ + + + A+ G+ + G +F + E +
Sbjct: 191 LSFTTTYKNNHHLNQDFIDSMEEMVIRNPNRAKVAVYGDWGISEGLVFDGLFEQRDFSME 250
Query: 128 DIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+I + + G+DFG+ H P A + ++ + ++YV + + +L
Sbjct: 251 EIAK-LPKSVGLDFGFKHDPTAGEFMAIDQRNRIVYVYDEFYQQGMLTQAIAQSLAKHKA 309
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ Q + +P T G + V G+ M
Sbjct: 310 YGLPITADSAEQRLTTELAS---------VYNVPNLRTAGKGKDSVIQGVQYMQS 355
>gi|134287337|ref|YP_001110720.1| putative terminase large subunit [Clostridium phage phiC2]
gi|93117175|gb|ABE99465.1| putative terminase large subunit [Clostridium phage phiC2]
Length = 417
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 60/236 (25%), Gaps = 20/236 (8%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 133 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 192
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I
Sbjct: 193 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFP 252
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ DFG++H +Y+ E + S G
Sbjct: 253 TESEYFDNMRLSQDFGFNHANVVLR--IGFKDGELYICNEIYAHEMDTSEIIKIANSIGL 310
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D +++ ++ G K G V+A I +
Sbjct: 311 EKTLF-----MYCDSAEPDRIK-MWKSAGYKA----KGVKKGPGSVKAQIDYLKQL 356
>gi|49476071|ref|YP_034112.1| phage related protein [Bartonella henselae str. Houston-1]
gi|49238879|emb|CAF28172.1| phage related protein [Bartonella henselae str. Houston-1]
Length = 402
Score = 88.3 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQG-----LVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T P + +P+ + + + ++ +
Sbjct: 86 LCWVDEAEPVTETAWQTLIPTLREEGNDWNAELWVTWNPCRENAPVEKRFRNVNNPHIKG 145
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEP-ILGSGRIFPI------VEEDI 122
+T + P + E+ + +GE G + E I
Sbjct: 146 AEITWRDNPQFPEKLNRDRKADLEQRPEHYNHIWEGEYLQTVEGAYYQKALLEASREGRI 205
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q HV +
Sbjct: 206 TTVPRDPLMQIRIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHVGWVF 265
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 266 QRGYDKALMVLPHDGATKDRVYNVSFESALQQAGFQTK---VIPNQGVGAVKMRIEAVRR 322
Query: 242 RM 243
Sbjct: 323 LF 324
>gi|62362371|ref|YP_224236.1| putative terminase large subunit [Listonella phage phiHSIC]
gi|58219993|gb|AAW67505.1| putative terminase large subunit [Listonella phage phiHSIC]
Length = 408
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 68/235 (28%), Gaps = 20/235 (8%)
Query: 14 NTVHYVWFDEE--PPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQ 70
+ +E PE+ + E L I + + P K SP+ + + D
Sbjct: 119 AQIDLTIVEEAEDVPENAWVELLPTIFRTDKAECWVIWNPRKKGSPVDKRFRQFKPDDAV 178
Query: 71 VIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSL 127
V+ M + P + E R+ D+ P G + + +
Sbjct: 179 VVEMNYYDNPFFPKGLEDLRRHDEDTMPPELYAHVWLGAYYEHTEAQVFKNWKV---EQV 235
Query: 128 DIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ G+DFG+ P A + + +Y+ K L
Sbjct: 236 NTNGWEGPYYGLDFGFSQDPTAGVKCWL--NGNDVYIEKEAGKVGLEIDHTADYLIKRID 293
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + D E +S +R G+ P VE G+ +
Sbjct: 294 GI----DDAKVYADSARPESIS-LLKRTGI---PRIEGVPKWKGSVEDGVEWLRS 340
>gi|303251622|ref|ZP_07337796.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649620|gb|EFL79802.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 409
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 20/239 (8%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W +E + + + + +T P K S + + ++I M
Sbjct: 127 LAWVEEAETVSEVAWQKLEPTVREHNSEIWVTWNPEKRGSATDLRFRRHVPENAKIIEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + EQ R +G I + +
Sbjct: 187 YSDNPWFPKELEQTRLADKARLDDATYRWIWEGAY--LEQSEAQIFRDKYQELEFEPNPD 244
Query: 133 WV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ G+DFG+ + A W D D +Y+ + +
Sbjct: 245 FDGPYYGLDFGFANDPTAAIKCWVFDGD-LYIEYEAGQVRLELDETASFISERIPEFEKY 303
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
D E +S +R G P VE GI + G+ +
Sbjct: 304 ISRA----DSARPESIS-YLKRHGF---PRIEGVKKWQGSVEDGIEHIKSY---GKVYI 351
>gi|300856304|ref|YP_003781288.1| putative phage terminaselarge subunit [Clostridium ljungdahlii DSM
13528]
gi|300436419|gb|ADK16186.1| putative phage terminase, large subunit [Clostridium ljungdahlii
DSM 13528]
Length = 410
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASSS---- 67
V VW +E E + E L R+ + L+ P+ + +H+
Sbjct: 81 VSIVWIEECSEVKYAGFKELLGRLRHPSLSLHMILSTNPVSKDNWTYKHFFRNDKKKIFI 140
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
+ T ++ E +++ + +Y KG +
Sbjct: 141 LDDEELYKKGIVIRNNTYYHHSTADDNLFLPESYTEQLDELKTYDPDLYRIARKGRFGIN 200
Query: 111 SGRIFPIVEEDIVI---NSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
R+ P E S+ ++ ++ GMDFG+ A + + D+ ++Y+
Sbjct: 201 GRRVLPQFEVAPHYAVLQSIGNIKNPIKRVGMDFGFETSYNAIVRMCIDDDNKILYIYWE 260
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y T + + + + D + + Y++QG M
Sbjct: 261 YYKNHMTDDRTAIEIAEFKRTQEIIYS------DCAEPKTIK-YYKQQGFNMRGAKK 310
>gi|262380955|ref|ZP_06074093.1| PBSX family phage terminase, large subunit [Bacteroides sp.
2_1_33B]
gi|262296132|gb|EEY84062.1| PBSX family phage terminase, large subunit [Bacteroides sp.
2_1_33B]
Length = 392
Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/242 (11%), Positives = 57/242 (23%), Gaps = 27/242 (11%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKG-RSPI 57
+ + K + ++ +E E + + + R + P I
Sbjct: 104 FFSTD-DEQKIRGRKRDILYCNEGNEISYLEWQQLVMRTT---LFSVIDYNPSFSDEHWI 159
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+ + T + P + I ++ G
Sbjct: 160 CDL---NNDPRTYHFISTYKDNPFLEQTIIDEIESLKNKNKVLWAVYGLGQRAMAEGLVF 216
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ +IV +H + + P A D +Y+ +
Sbjct: 217 PDFEIVDEFPSYAKHVALGLDFGYSY-DPTAIVRCGL--VDDRLYLDEKCYLTHMLTKEI 273
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
+ LK G + +L + G+ + P V GI
Sbjct: 274 IKVLKDLG---LVVYADSA-------DPRLIQEISNAGIIIYPADKY----KGSVMGGII 319
Query: 238 DM 239
M
Sbjct: 320 KM 321
>gi|307252059|ref|ZP_07533958.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860359|gb|EFM92373.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 407
Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 20/239 (8%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W +E + + + + +T P K S + + ++I M
Sbjct: 125 LAWVEEAETVSEVAWQKLEPTVREHNSEIWVTWNPEKRGSATDLRFRRHVPENAKIIEMN 184
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + EQ R +G I + +
Sbjct: 185 YSDNPWFPKELEQTRLADKARLDDATYRWIWEGAY--LEQSEAQIFRDKYQELEFEPNPD 242
Query: 133 WV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ G+DFG+ + A W D D +Y+ + +
Sbjct: 243 FDGPYYGLDFGFANDPTAAIKCWVFDGD-LYIEYEAGQVRLELDETASFISERIPEFEKY 301
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
D E +S +R G P VE GI + G+ +
Sbjct: 302 ISRA----DSARPESIS-YLKRHGF---PRIEGVKKWQGSVEDGIEHIKSY---GKVYI 349
>gi|322513476|ref|ZP_08066587.1| phage terminase [Actinobacillus ureae ATCC 25976]
gi|322120735|gb|EFX92618.1| phage terminase [Actinobacillus ureae ATCC 25976]
Length = 406
Score = 87.5 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 17/230 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
+ W DE + + + + + LT P K S + + + ++ M
Sbjct: 124 FAWVDEAESVSEMAWSKLIPTVREHNSEIWLTWNPEKRDSATDKRFRQFPPDNSVIVEMN 183
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
P + EQER +G I + +
Sbjct: 184 YTYNPWFPDVLEQERLNDKKRLDDATYRWIWEGAY--LEQSEAQIFRDKYQELEFEPNPD 241
Query: 133 WV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ G+DFG+ + A W D D +Y+ R +
Sbjct: 242 FDGSYHGLDFGFANDPTAAIKCWVFDGD-LYIEYEARQVRLELDETAGFISGCIPEFEKY 300
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
D E +S +R G P VE GI +
Sbjct: 301 ISRA----DSARPESIS-YLKRHGF---PRIEGVKKWQGSVEDGIEHIKS 342
>gi|49474625|ref|YP_032667.1| phage related protein [Bartonella quintana str. Toulouse]
gi|49240129|emb|CAF26575.1| phage related protein [Bartonella quintana str. Toulouse]
Length = 402
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 70/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T P + +P+ + + + + + +
Sbjct: 86 LCWVDEAEPVTETAWQTLIPTLREEGKDWNAELWVTWNPCRENAPVEKRFRNVENPNIKG 145
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + P + ++ + +GE + + +E I
Sbjct: 146 AEINWRDNPLFPQKLNRDRKADLQQRPENYNHIWEGEYLQSVQGAYYQKALLEAELEGRI 205
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q HV +
Sbjct: 206 TNVPRDPLMQIKIFWDIGGTGAKADATALWVAQFIGREIRVLDYYEAQGQPLAEHVGWVF 265
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 266 QRGYEKALMVLPHDGATKDRVYNVSFESALQQAGFQTK---VIPNQGIGAVKMRIEAVRR 322
Query: 242 RM 243
Sbjct: 323 LF 324
>gi|121602586|ref|YP_988560.1| PBSX family phage terminase large subunit [Bartonella bacilliformis
KC583]
gi|120614763|gb|ABM45364.1| putative phage terminase, large subunit, PBSX family [Bartonella
bacilliformis KC583]
Length = 402
Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + + +
Sbjct: 86 LCWVDEAEPVTETAWQTLIPTLREEGQDWHSELWVTWNPLRENAPVEKRFRLTKDPNIKG 145
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + ++ + + + +G+ + + E I
Sbjct: 146 VEINWRDNPQFPDKLNRDRLADLHQRPEQYGHIWEGDYLQAVQGAYYQKLLLDAEQEGRI 205
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
S D + A V I ++ Y + Q H+ +
Sbjct: 206 AHVSRDPLIQIKIFWDIGGTGAKADATALWVAQFIGREIRILDYYEAQGQPLSEHIGWIC 265
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G V+ I +
Sbjct: 266 HRGYDKALMVLPHDGATKDRVYNVSFESALQQAGFQTK---IIPNQGLGAVKMRIEAVRR 322
Query: 242 RM 243
Sbjct: 323 LF 324
>gi|282601251|ref|ZP_05981204.2| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
gi|282569696|gb|EFB75231.1| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
Length = 414
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/239 (13%), Positives = 61/239 (25%), Gaps = 21/239 (8%)
Query: 15 TVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
V WF+E D + + R + + P + Y+
Sbjct: 127 AVGLCWFEELDQFDGPEEVRSVEQSILRGGDWTLTLK-SFNPPAMARSWVNRYVLEPRPG 185
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
+ V T + P E+ + GE ++GSG +
Sbjct: 186 KLVHHSTYRDLPRQFLGERFWADAEHLRKTNPDAYRHEYGGE-VVGSGAAVFDNLTLREV 244
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+I G+D+GW+ P+A + ++ + + L
Sbjct: 245 PDEEIASFDRLYHGVDWGWYPDPWAYNAVSYDAARRTLVIFDELTRTRTPNRDTARLLVE 304
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
G D + + YR G+ G V + +
Sbjct: 305 RGVGGDDGGLLTA---DAAEPKSCAD-YRAAGLPCRAA----VKGPGSVRESMKWLQGL 355
>gi|167757386|ref|ZP_02429513.1| hypothetical protein CLORAM_02936 [Clostridium ramosum DSM 1402]
gi|167703561|gb|EDS18140.1| hypothetical protein CLORAM_02936 [Clostridium ramosum DSM 1402]
Length = 431
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 30/258 (11%)
Query: 1 LKAYEQGRDKWQSNTV-----HYVWFDEEPPEDVY------FEGLTRINATQGLVTLTLT 49
K + K +S V YVW++E + Y + L R + V +
Sbjct: 115 FKGAD-NPKKLKSTKVFVGYVKYVWYEECDEFESYDKIRNINQSLLR-GGPEYCVFYSFN 172
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKG 105
P + + + D + T + P EQ ++E G
Sbjct: 173 PPESQRNWCNKQVLIKRPDTYISHTTYLQAPREWLGEQFLIEAEHLKVINEEKYNHDYLG 232
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVV 164
E + G+G + I+ +I G+DFG+ P A + +++ +++
Sbjct: 233 E-VTGTGGEVFTNLDIREISDDEIAVFDRLKNGLDFGYAGDPLAYLKMNYDKTRRRLFIF 291
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ V +K D ++ ++ G+ ++
Sbjct: 292 GEVYGTRLSNKKAVKKIKKLNPLNKLV------TADSAEPRTINE-FKLLGLNIVGA--- 341
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE GI + D
Sbjct: 342 -KKGPDSVENGIKWLQDL 358
>gi|9630534|ref|NP_046964.1| large terminase subunit [Methanobacterium phage psiM2]
gi|3249594|gb|AAC27048.1| large terminase subunit [Methanobacterium phage psiM2]
Length = 468
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 15/258 (5%)
Query: 4 YEQGRDKWQSNTVHYVWFDE-----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
+E+ R ++Q ++ HY+ FDE E F L + + + T G
Sbjct: 156 HEKDRYRYQGSSYHYIAFDELTEFMETQYRFMFRSLRKEVNDHIPLRVRATSNPGGIGHE 215
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG-SGRIFPI 117
+ ++ I T E P+ N E + ++ R G+ + G +F
Sbjct: 216 WVKTRFITGEKTFIPSTWRENPYLNRDEYEEALNMLDHVTRRQLKDGDWDVTLQGGVFKR 275
Query: 118 VEEDIVINSLDIPEHWVQIGG-----MDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
+++ + + V+ D + G L+ D YV+ R RE
Sbjct: 276 EWFEVIDSPPNGLVMSVRYWDFAATKPDGANDPDYTVGLLLGVDKEDYYYVLDVRRFRES 335
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
L++ + + + S ++ Y R ++ A G
Sbjct: 336 PGKVKSKVLRTAEEDGREVII--AKEEEPGSSGKIVTDYLRSLLQGYTFRADRVTGDKVT 393
Query: 233 EAGISDMLDRMRSGRWKV 250
A + SGR KV
Sbjct: 394 RA--LPVSSYAESGRIKV 409
>gi|262043664|ref|ZP_06016773.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039002|gb|EEW40164.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 464
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/254 (12%), Positives = 68/254 (26%), Gaps = 28/254 (11%)
Query: 11 WQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS--ASS 66
+ + F E + + G TP +G++ + +
Sbjct: 125 LIGSGHVGIVFSEWALSNPSAWAFLRPILADNGGWAFFVSTP-RGKNHFYKMFQGGLKDP 183
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--------REARTKGEPILGS-----GR 113
+ ++ + T H + + + +
Sbjct: 184 DNWFCDHLSADITLHIPPETLAQELREMQAERGEEEGQALFNQEYMCDWNAAIPGAYYSS 243
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
I +E+ I ++ + D G A + + V+ Y
Sbjct: 244 ILVGLEKGGQIGNVPWDPQYEVYTSWDLGIGDATAIWF--YQFIGKEVRVIDYYESSGVG 301
Query: 174 PIFHVAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+V L+ +PHD + +G + G++ AT
Sbjct: 302 LEHYVKILREKPYTYAERHFFPHDVRARELSTGASREETLGKLGIRCKVLPAT------S 355
Query: 232 VEAGISDMLDRMRS 245
V+ GIS++ +RS
Sbjct: 356 VDDGISEVRMMLRS 369
>gi|255103175|ref|ZP_05332152.1| phage terminase large subunit [Clostridium difficile QCD-63q42]
Length = 413
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 61/236 (25%), Gaps = 20/236 (8%)
Query: 15 TVHYVWFDEEP-----PEDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS 66
+ +VW +E D+ + L I L T P+ I Y +
Sbjct: 129 KLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN 188
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T + +E +R+ + G G + I +
Sbjct: 189 DDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFT 248
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ DFG++H +Y+ E + S G
Sbjct: 249 TEFEYFDNMRLSQDFGFNHANVVLR--IGFKDGELYICNEIYVHEMDTSEIIKIANSIGL 306
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D +++ ++ G K G V+A I +
Sbjct: 307 EKTLF-----MYCDSAEPDRIK-MWKNAGYKA----KGVKKGPGSVKAQIDYLKQL 352
>gi|254523093|ref|ZP_05135148.1| phage terminase, large subunit, pbsx [Stenotrophomonas sp. SKA14]
gi|219720684|gb|EED39209.1| phage terminase, large subunit, pbsx [Stenotrophomonas sp. SKA14]
Length = 478
Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/289 (12%), Positives = 72/289 (24%), Gaps = 51/289 (17%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP-----PEDVYFEGLTRINATQGLVTLTLTPLK--- 52
+ R K++ +Y+ FDE +Y R A + T
Sbjct: 111 YLNADNDRFKYRGRAWNYIGFDELTLWPTATCYLYLMSRNRTTARDLPRYMRGTTNPDGV 170
Query: 53 GRSPIIEHYLSASSSD---------------------------RQVIRMTINETPHYNEQ 85
G+ ++E + R+ I + + H
Sbjct: 171 GQRWVMERWGIEEDGGPTCLPVSMMFEEEDGEGGYREVPRTFTRRFIPAKLTDNKHLRGT 230
Query: 86 ERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE------DIVINSLDIPEHWVQIGGM 139
+ + P ER+A G E I +
Sbjct: 231 GYRETLMMLPPEERDALLAGRWSGNRVEGAFYFRELQAARAQQRIGKVPFVPGVPVNTFW 290
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAW-----PH 194
D G++ + + + Y+ + L+ G + + PH
Sbjct: 291 DLGYNDFNSIWF--HQQIGLTNRFIHAYQNSGYDISHYTRYLQELGTERGYVYGKHYVPH 348
Query: 195 DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
D ++G+ + R +M + + V GI+
Sbjct: 349 DAANTSLQTGKTMIQLLRE---QMAGQSFEIVPRVDHVLVGINQTRAAF 394
>gi|194015441|ref|ZP_03054057.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
7061]
gi|194012845|gb|EDW22411.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
7061]
Length = 437
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/253 (14%), Positives = 83/253 (32%), Gaps = 38/253 (15%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDE--EPPEDVYFEGLTRINATQGLVTL--TLTPLKGRS 55
K ++ +K +S + +W +E E + + E L R+ + + + P+ +
Sbjct: 104 FKGLDK-PEKLKSINNISMIWIEECSEVSYEGFKELLGRLRHPSLPLYMMLSTNPVGQDN 162
Query: 56 PIIEHYLSASS-------------------SDRQVIRMTINETPHYNEQERKRI--IDSY 94
H+ D T + + +++ + Y
Sbjct: 163 WTYRHFFRDEQLKRFVLDDETLYKKRTVVIKDTYYHHSTAEDNLFLPKSYVEQLDELKEY 222
Query: 95 PLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQI---GGMDFGW-HHPFAAG 150
KG + ++FP E + L+ + + GMDFG+ A
Sbjct: 223 DPDLYRIARKGYFGINGTKVFPQFEVRSHSDVLEAIQQIDRPLKRAGMDFGFVKSYNALI 282
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
L + + +Y+ Y R +T LK + + ++ D + +
Sbjct: 283 RLAVDHEKKYLYIYWEYYDRGKTDDETAVDLKEF------IESKELIKADAAEPKTIH-Y 335
Query: 211 YRRQGMKMLPECA 223
+R++G +M+
Sbjct: 336 FRQRGFQMVAAHK 348
>gi|187935777|ref|YP_001886932.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
B str. Eklund 17B]
gi|187723930|gb|ACD25151.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
B str. Eklund 17B]
Length = 450
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSASSS---- 67
V VW +E E + + E L R+ + + LT P+ + +++
Sbjct: 117 VSIVWIEECSEVKYEGFKELLGRLRHPTLKLHMILTTNPVSKSNWCYKYFFIDKKKKLFV 176
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
+ ++ + ++ + ++ KG+
Sbjct: 177 LDDKDLYKKRIVIKNNTYYHHSLADDNYFLPKSYILQLDDLKTHDKDLWRVARKGQFGTN 236
Query: 111 SGRIFPIVEEDIVINSLDIPEHWV---QIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
++ P E+ L++ + GMDFG+ A L + DS ++Y+
Sbjct: 237 GKKVLPQFEKKPHYKVLEMMHNTKKLLYRVGMDFGFETSYNAVVRLAIDDDSKILYIYWQ 296
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T L+ + K + ++ D + + YR++G ML
Sbjct: 297 YYKNQMTDDKTAIELEEFKK------TQERIKADSAEPKTI-TFYRQEGFNMLGAKK 346
>gi|165928475|ref|ZP_02224307.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016]
gi|165919510|gb|EDR36843.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016]
Length = 397
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 10/236 (4%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD------RQVIRMTIN 77
D +++ L ++ L + KG S + + + D + +
Sbjct: 107 ADKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQNKDLQRKGQWKSWQFVTA 166
Query: 78 ETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIG 137
++P E + + SGR++ + ++ + L
Sbjct: 167 DSPFVPSAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFDRNVHVKPLQFNPKLPIWV 226
Query: 138 GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK---SWGKWLPWAWPH 194
G DF + L + ++ V + T + W +
Sbjct: 227 GQDFNIDPMSSVI-LQPQPNGELWAVDEVVLFSSNTAEVCDELERRFWRWKSQVTIFPDP 285
Query: 195 DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
G GE ++ +G + ++ V A ++ R +
Sbjct: 286 AGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVNRMLMSASGETRLYI 341
>gi|46143644|ref|ZP_00204538.1| COG1783: Phage terminase large subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 407
Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 64/239 (26%), Gaps = 20/239 (8%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W +E + + + + +T P K S + + ++I M
Sbjct: 125 LAWVEEAETVSEVAWQKLEPTVREHNSEIWVTWNPEKRGSATDLRFRQHVPENAKIIEMN 184
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + EQ R +G I + +
Sbjct: 185 YSDNPWFPKELEQTRLADKARLDDATYRWIWEGAY--LEQSEAQIFRDKYQELEFEPNPD 242
Query: 133 WV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ G+DFG+ + A W D D +Y+ + +
Sbjct: 243 FDGPYHGLDFGFANDPTAAIKCWVFDGD-LYIEYEAGQVRLELDETASFISGRIPEFEKY 301
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
D E +S +R G P VE GI+ + G+ +
Sbjct: 302 ISRA----DSARPESIS-YLKRHGF---PRIEGVKKWQGSVEDGIAHIKSY---GKVYI 349
>gi|319647234|ref|ZP_08001456.1| YqaT protein [Bacillus sp. BT1B_CT2]
gi|317390581|gb|EFV71386.1| YqaT protein [Bacillus sp. BT1B_CT2]
Length = 431
Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 34/227 (14%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL--TPLKGRSPIIEHYLSASSSDR------------ 69
E + + E L R+ + + P+ + +H+ ++R
Sbjct: 126 EVKYEGFKELLGRLRHPTLPLHMIFSTNPVGEDNWTYKHFFKDDLNNRFVLDDKELYEKR 185
Query: 70 -------QVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILGSGRIFP---I 117
T + E +++ + Y KG + R+FP
Sbjct: 186 TIVLNDTYYHHSTAEDNLFLPESYVRQLDELKEYDPDLYRIARKGHFGVNGVRVFPQLEE 245
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
D V+ ++ + ++ GMDFG+ A L + +Y+ Y R T
Sbjct: 246 WPHDEVMQAVSNIDCPIKRVGMDFGFEESYNAVVRLAVDHKKKYLYIYWEYYKRGMTDDR 305
Query: 177 HVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
L+ + + ++ D + + +R+ G M+
Sbjct: 306 TAEELQEFKN------TQELIKADSAEPKTI-QYFRQHGFNMVGAHK 345
>gi|307263070|ref|ZP_07544692.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306871696|gb|EFN03418.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 407
Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 20/239 (8%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W +E + + + + +T P K S + + ++I M
Sbjct: 125 LAWVEEAETVSEVAWQKLEPTVREHNSEIWVTWNPEKRGSATDLRFRRHVPENAKIIEMN 184
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + EQ R +G I + +
Sbjct: 185 YSDNPWFPKELEQTRLADKARLDDATYRWIWEGAY--LEQSEAQIFRDKYQELEFEPNPD 242
Query: 133 WV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ G+DFG+ + A W D D +Y+ + +
Sbjct: 243 FDGPYHGLDFGFANDPTAAIKCWVFDGD-LYIEYEAGQVRLELDETASFISGRIPEFEKY 301
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
D E +S +R G P VE GI + G+ +
Sbjct: 302 ISRA----DSARPESIS-YLKRHGF---PRIEGVKKWQGSVEDGIEHIKSY---GKVYI 349
>gi|319409256|emb|CBI82900.1| phage-related protein [Bartonella schoenbuchensis R1]
Length = 441
Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 70/242 (28%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + + +
Sbjct: 125 LCWVDEAEPVTETAWQTLIPTLREEGENWHCELWVTWNPLRENAPVEKRFRAVKDPHIKG 184
Query: 72 IRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + + P + ++ + + + +GE + + E I
Sbjct: 185 VEINWRDNPQFPDRLNRAREADFTQRPEQYNHIWEGEYLQAVQGAYYQKLLLEAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
D + A V I V+ Y + Q H+ +
Sbjct: 245 THVPRDPLIQIKIFWDIGGTGAKADATALWVAQFIGREIRVLDYYEAQGQPLSEHIGWMC 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + + G + + G V+ I +
Sbjct: 305 QRGYDKALMVLPHDGATKDRVCNVSFESALQHAGFQTK---IIPNQGVGAVKMRIEAVRR 361
Query: 242 RM 243
Sbjct: 362 LF 363
>gi|254431412|ref|ZP_05045115.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
gi|197625865|gb|EDY38424.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
Length = 470
Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/298 (12%), Positives = 74/298 (24%), Gaps = 64/298 (21%)
Query: 10 KWQSNTVHYVWFDEE---PPEDVYFEGLTRINATQG---LVTLTLTPLKGRSPIIEH--- 60
+ Q + DE P D Y + + G V P ++
Sbjct: 108 RLQGRSKICAIHDEAGTQPTPDFYDQLQGVLRGPAGVPTRVIFLANPGGPGHHWLKERFA 167
Query: 61 --------------YLSASSSDRQVIRMTINETPHYNEQERK---RIIDSYPLHEREART 103
+ + + PH + Q+ K I+ A
Sbjct: 168 APAGLPEPMKPRRFWSEEYEKHCIFLTANASINPHVDWQQYKRNVEIVSGGDPAMLAALL 227
Query: 104 KGEPILGSGRI-----FPIVEEDIVINSLDIPEHWVQIGG---MDFGWHHPFAAGHLV-- 153
+G G + IN +I + MD G+ P A +V
Sbjct: 228 EGRWDTDLGGAFFASCWSPNRCRHAINPGEIYLRGHRPRPFVVMDHGYAAPTVAYLVVPN 287
Query: 154 ---WNRDSDVIYVVKNYR------------------CREQTPIFHVAALKSWG---KWLP 189
+ + + + + L+ WG +
Sbjct: 288 PPGIDAPKGTLLLADELYLCSSNVSGRRDWARGSCLPSSEQAAAMIEWLQRWGLERGDVR 347
Query: 190 WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGR 247
+ ++ ++R G+ + A V AG+ + +RM + R
Sbjct: 348 ILADDAMWNSNGHISGSIAQEFRAAGVTL----ARAQKMKTPVMAGLQMLRNRMHAAR 401
>gi|15837841|ref|NP_298529.1| hypothetical protein XF1239 [Xylella fastidiosa 9a5c]
gi|9106220|gb|AAF84049.1|AE003958_3 hypothetical protein XF_1239 [Xylella fastidiosa 9a5c]
Length = 135
Score = 86.4 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 62/120 (51%), Positives = 85/120 (70%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++EQG +KWQ++ V ++WFDE+PPEDVYFEG+TR N T LV +T TPLK S ++ +L
Sbjct: 9 SFEQGGEKWQADPVDWMWFDEQPPEDVYFEGITRTNRTFWLVCMTFTPLKSISTVVWRFL 68
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ DR ++M+I + HY ++ RI SYP +EREART+G P LGSGR+FPI E I
Sbjct: 69 LENVPDRADMQMSIEDAEHYLVEDCARITASYPPYEREARTQGVPALGSGRVFPIAGEKI 128
>gi|300173892|ref|YP_003773058.1| phage terminase large subunit [Leuconostoc gasicomitatum LMG 18811]
gi|299888271|emb|CBL92239.1| phage terminase, large subunit, pbsx family [Leuconostoc
gasicomitatum LMG 18811]
Length = 427
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 77/237 (32%), Gaps = 25/237 (10%)
Query: 19 VWFDEEPP------EDVYFEGLTRINATQGLVT---LTLTPLKGRSPIIEHYLSASS--S 67
+W +E + E + + LT P R + + + + +
Sbjct: 130 LWVEEAYQMELEESFETVDESMRGVIDDPDGFYQTVLTFNPWNERHWLKKRFFDEDTRVN 189
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVIN 125
+ I T + P + R+++ + R AR GE + G I +
Sbjct: 190 NSLAITTTYKDNPFLDVDYVNRLLEMKKRNPRRARVAVDGEWGVAEGLI-YENTIVEKFD 248
Query: 126 SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
++ + + GMD+G+ P N + IY++K + L
Sbjct: 249 IREVLKGSHIVRGMDWGYGPDPTTFIEYAINTKTKDIYILKEMYKQHMLTDEIFKWL--- 305
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
++ D G+++ + R +G++ + + G++ + D
Sbjct: 306 --YVHGYQQGDIRADYANGGDRMIQELRNKGIRGMKRAH-----KYEIMFGVTYLQD 355
>gi|293553737|ref|ZP_06674356.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E1039]
gi|291602094|gb|EFF32327.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E1039]
Length = 382
Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 71/258 (27%), Gaps = 30/258 (11%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L + P
Sbjct: 61 AQNPERIKSLKDSKFPFAIGWIEELAEFKNEDEVTTITNSLLRGELDDGLFYKFFYSYNP 120
Query: 51 L-KGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ +S + + Y ++ + + T + P +++ + + + R A + +
Sbjct: 121 PKRKQSWVNKKYETSFQPKNTFIHHSTYKDNPFISKEFLSEVEAARARNPRRAEWEYDGK 180
Query: 109 LGSGRIFPIVEEDIV---INSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVV 164
I P I I + G+D+G+ P A +++ + IY +
Sbjct: 181 AIGSGIVPFDNLRIEAGSITDEMVANFDNIRQGLDYGYATDPLAFVRWHYDKKRNCIYAI 240
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + +KS + + + +
Sbjct: 241 DELYEVKCSNRRAAQWIKSNKYHYQDIIAE-------VEPKSNAEMRNEHDIS---KIRQ 290
Query: 225 FDDGSNGVEAGISDMLDR 242
G + VE G + D
Sbjct: 291 VTKGPDSVEYGEKWLDDL 308
>gi|295840070|ref|ZP_06827003.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
gi|197697038|gb|EDY43971.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
Length = 489
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 78/274 (28%), Gaps = 47/274 (17%)
Query: 8 RDKWQSNTVHYVWFDEEPPED--VYFEGLTRINA---TQGLVTLTLTPLKGRSPIIEHYL 62
+K+ S+ + DE + +TR+ T + P + + +
Sbjct: 116 PEKFLSSEFDRIAVDEATQISKTAHETLITRLRGGAPTYKQIVCAANPAQPSHWLKQRAD 175
Query: 63 SASSSDRQVIRMTINETPHYNEQE---------RKRIIDSYPLHEREARTKGEPILGSGR 113
+ + ++I + P Y + +D+ R G+ G
Sbjct: 176 TGT---MRLINSRHRDNPAYVNADGSLTEIGAAYLSKLDALSGVRRLRLRDGQWAAAEGM 232
Query: 114 IFPIVEE-DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
++ ++ +I+ IP+ W + +DFG+ +PF + D + + + ++
Sbjct: 233 VYDGWDDAVHLIDPAPIPKEWPRWWVVDFGFTNPFVLQCWAEDPDG-RLIMYREIYRTQR 291
Query: 173 TPIFHVAALKSW--------GKWLPWAWPHDGLQHD-------------KRSGEQLSAQY 211
H + G E +
Sbjct: 292 LVEDHARDILRLVRTCAQCCGSKREAHDCQACEACRLEWTEPRPQAVICDHDAEDRATLE 351
Query: 212 RRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
R G+ P G + GI RM+
Sbjct: 352 RHLGLATRPA----KKGKST---GIQAAQARMKV 378
>gi|16800336|ref|NP_470604.1| hypothetical protein lin1267 [Listeria innocua Clip11262]
gi|16413741|emb|CAC96498.1| lin1267 [Listeria innocua Clip11262]
Length = 444
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/253 (13%), Positives = 71/253 (28%), Gaps = 38/253 (15%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDE--EPPEDVYFEGLTRINATQGL--VTLTLTPLKGRS 55
K ++ K +S + +W +E E Y E L R+ + LT P+ +
Sbjct: 110 FKGLDK-PSKLKSIANISIIWVEECSEISYAAYKELLGRLRHPFLKTHIILTSNPVSIDN 168
Query: 56 PIIEHYLSA-------------------SSSDRQVIRMTINETPHYNEQERKRIIDS--Y 94
+ H+ ++ + + + D Y
Sbjct: 169 WVYLHFFEDFINKRFILSDSLLYEKRIIKKNNTYYHHSVAEDNYFLTQDYIDDLEDMKNY 228
Query: 95 PLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAG 150
+G + ++ P +EE ++ + GMDFG+ A
Sbjct: 229 DPDLYRVARQGRFGVLGTKVLPQLEEKDHDWMIEAINNIKNPINRNGMDFGFVESMNALL 288
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
+ + D +Y+ Y T +K + + + D + +
Sbjct: 289 SMTIDPDKKDLYIHFEYYANGNTDDVTAQDIKEFKETKEVIF------ADSAEPKTIK-Y 341
Query: 211 YRRQGMKMLPECA 223
+ G M
Sbjct: 342 FSDNGFVMYAAHK 354
>gi|13470687|ref|NP_102256.1| bacteriophage terminase large subunit-like protein [Mesorhizobium
loti MAFF303099]
gi|14021429|dbj|BAB48042.1| mll0463 [Mesorhizobium loti MAFF303099]
Length = 445
Score = 85.6 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 77/301 (25%), Gaps = 63/301 (20%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQG-----------LVTLTLTPL 51
E+ R K+Q +H + DE +Y R+ + P
Sbjct: 56 EKDRFKYQGAEIHVLLIDELTHFTEVIYRFLRNRVRMVGIKLPAKYAGRFPRILCGANPG 115
Query: 52 KGRSPIIEHYLSASSS--------------DRQVIRMTINETPHY---NEQERKRIIDSY 94
++ ++ RQ I + + P + R++
Sbjct: 116 GIGHQFVKATFIDGATAMKVYTTEASEGGMRRQFIPAQLEDNPSMNDNDPGYENRLMGLG 175
Query: 95 PLHEREARTKGEPILGSGRIFPIV-EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153
A G+ + G F V+ IP+HW++ D+G PFA G V
Sbjct: 176 SESLVRAMRYGDWDVVEGAYFDNFERRRHVVKPFTIPDHWIRFRAGDWGSAKPFAFGWYV 235
Query: 154 WNRD-----------SDVIYVVKNYRCRE----------QTPIFHVAA----LKSWGKWL 188
D + + + + H A ++
Sbjct: 236 VASDDTIIAPGVVVPRGALVKYREWYGVKIDKSGKFLPDVGLKLHAEAVGAGVRQRDYDD 295
Query: 189 PWAW-PHDGLQHDKRSGEQLSAQYRR-----QGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D + G ++ + R G G G + R
Sbjct: 296 IIVYGVLDPAAFSQDGGPSIAERMTRGTTGSNGSTFRRADNKRTAGRGA-MGGWDQLRGR 354
Query: 243 M 243
+
Sbjct: 355 L 355
>gi|317499861|ref|ZP_07958099.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316898763|gb|EFV20796.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 428
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 38/237 (16%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSASSS---- 67
V VW +E E + E L R+ + L+ P+ + +++
Sbjct: 119 VSIVWIEECSEVKYAGFKEILGRLRHPTLSNHIILSTNPVSKGNWCYKYFFQDKKKKVFV 178
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
+ T+++ ++ +++ + ++ +G +
Sbjct: 179 LDDEKLYKERTVVVGNTYYHHSTVDDNFFVPKEYVEQLDDLQTHDPDLYRVARQGRFGVN 238
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+FP + + GMDFG+ AA ++ + D ++Y+ +
Sbjct: 239 GSLVFPQFVVEPANQVEKEIKAIRTPLEKNGMDFGFVTSYNAALRMIVDHDEKILYIYRE 298
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y R +T +K W ++ D + + Y++ G +M
Sbjct: 299 YYSRNKTDPEIAEDMKD--------WKDIVIKADCAEPKAIR-YYKQSGFRMKACKK 346
>gi|240850378|ref|YP_002971772.1| phage terminase, large subunit [Bartonella grahamii as4aup]
gi|240267501|gb|ACS51089.1| phage terminase, large subunit [Bartonella grahamii as4aup]
Length = 444
Score = 85.2 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 76/242 (31%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + + + +
Sbjct: 127 LCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVEKRFRFSDNEAIKR 186
Query: 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + + + +D + +G + + E I
Sbjct: 187 VEINWSDNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRI 246
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q HV L+
Sbjct: 247 GRVARDPLMQIRAFWDIGGTGAKADATAIWIAQFVGREIRVLNYYEAQGQPLSEHVGWLR 306
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + ++ G + + G+ V+ I +
Sbjct: 307 QNGYEKALMVLPHDGATRDRVHNVSFESALKQAGFQTK---VIPNQGAGAVKIRIETVRR 363
Query: 242 RM 243
+
Sbjct: 364 VL 365
>gi|52081321|ref|YP_080112.1| Phage terminase, large subunit protein [Bacillus licheniformis ATCC
14580]
gi|52786700|ref|YP_092529.1| YqaT [Bacillus licheniformis ATCC 14580]
gi|52004532|gb|AAU24474.1| Phage terminase, large subunit protein [Bacillus licheniformis ATCC
14580]
gi|52349202|gb|AAU41836.1| YqaT [Bacillus licheniformis ATCC 14580]
Length = 431
Score = 85.2 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 34/227 (14%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL--TPLKGRSPIIEHYLSASSSDR------------ 69
E + + E L R+ + + P+ + +H+ ++R
Sbjct: 126 EVKYEGFKELLGRLRHPTLPLHMIFSTNPVGEDNWTYKHFFKDDLNNRFVLDDKELYEKR 185
Query: 70 -------QVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILGSGRIFP---I 117
T + E +++ + Y KG + R+FP
Sbjct: 186 TIVLNDTYYHHSTAEDNLFLPESYVRQLDELKEYDPDLYRIARKGHFGVNGVRVFPQLEE 245
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
D V+ ++ + ++ GMDFG+ A L + +Y+ Y R T
Sbjct: 246 WPHDEVMQAVSNIDCPIKRVGMDFGFEESYNAVVRLAVDHKKKYLYIYWEYYKRGMTDDR 305
Query: 177 HVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
L+ + + ++ D + + +R+QG M+
Sbjct: 306 TAEELQEFKN------TQELIKADSAEPKTI-QYFRQQGFNMVGAHK 345
>gi|168207201|ref|ZP_02633206.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens E str. JGS1987]
gi|170661424|gb|EDT14107.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens E str. JGS1987]
Length = 427
Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 79/237 (33%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSASS----- 66
V +W +E E + E L R+ + L+ P+ + +H+
Sbjct: 118 VSIIWIEECSEVKYAGFKELLGRLRHPTLSNHIILSTNPVSKGNWSYKHFFQDKRNHFFV 177
Query: 67 --------------SDRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
+ T+++ ++ +++ + + KG +
Sbjct: 178 LDDEELYIKKNIIIKNTYYHHSTVDDNFFAPKEYIEQLDELKLHDPDLWRIARKGRFGVN 237
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+FP E +D +H + GMDFG+ A + + D V+Y+
Sbjct: 238 GKLVFPQFEVMKYDKVMDEIKHIKKPLLKNGMDFGFVTSYNALLRMAIDHDKRVLYIYWE 297
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y R++T I +K + + + D + + Y+++G +M
Sbjct: 298 YYTRDKTDIEIAKDIKEFKETREVI------KADCAEPKAIK-FYKQEGFRMKACKK 347
>gi|225220117|ref|YP_002720084.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
gi|224986058|gb|ACN74622.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
Length = 461
Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 24/253 (9%)
Query: 10 KWQSNTVHYVWFDE--EPPEDV----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++ DE +DV Y + L R+ A + ++ +G + + +
Sbjct: 143 RLIGVNAAWIVADEFDTTKQDVAMAAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIFEV 202
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDI 122
S +++IR + H + YP + +A G + L SG ++ + +
Sbjct: 203 EKGSQKRLIRAKTTDNHHLPADFIDTLRSQYPANLIDAYLNGLFVNLTSGAVYKMFNREG 262
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRD------SDVIYVVKNYRCREQTPIF 176
++ ++ I GMDF A ++ R D I+ V + TP
Sbjct: 263 NASTEEVHPDDTLIIGMDFNVTKMAAVVYVRRQRITENKEFRDEIHAVDEFVDLFDTPAM 322
Query: 177 HVAALKSWGKW----LPWAWPHDGLQHDKRSGE--QLSAQYRRQGMKMLPECATFDDGSN 230
A + + + +P + K AQ G ++ +
Sbjct: 323 IEAIEERYPEHCAAGRVVVYPDSSGKSRKTVNASSSDIAQLEDAGFEVEYDSVNPP---- 378
Query: 231 GVEAGISDMLDRM 243
V+ + M M
Sbjct: 379 -VKDRLIAMNTMM 390
>gi|302385792|ref|YP_003821614.1| phage terminase, large subunit, PBSX family [Clostridium
saccharolyticum WM1]
gi|302196420|gb|ADL03991.1| phage terminase, large subunit, PBSX family [Clostridium
saccharolyticum WM1]
Length = 428
Score = 84.8 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 38/237 (16%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASSS---- 67
V VW +E E + E L R+ + + L+ P+ + + +H+ S+
Sbjct: 121 VSIVWIEECSEVKYAGFKEILGRLRHPELSNHIILSTNPVSKSNWVYKHFFQDKSTGYKI 180
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
+ T+++ ++ +++ + + KG +
Sbjct: 181 LNDEELYTRRIVVIGNTYYHHSTVDDNYFVPQEYVEQLDELQQHDPDLYRIARKGRFGVN 240
Query: 111 SGRIFPIV---EEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+FP +D V + + + V+ GMDFG+ A ++ + D+ ++Y+
Sbjct: 241 GRLVFPQFVVKPDDEVKTLIKLIRNPVEKNGMDFGFVTSYNAVVRMMIDHDNKILYLYDE 300
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y R++T A L W L ++ D + + Y++QG ++ P
Sbjct: 301 YYSRDKTDPEIAADLAKWIGVL--------IKADCAEPKAIR-YYKQQGFRIKPCKK 348
>gi|228947332|ref|ZP_04109625.1| Phage terminase large subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228812331|gb|EEM58659.1| Phage terminase large subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 312
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 66/236 (27%), Gaps = 20/236 (8%)
Query: 15 TVHYVWFDE-----EPPEDVYFEGLTRINATQG---LVTLTLTPLKGRSPIIEHYLSASS 66
+ ++W +E E D+ + L I + +T T P+ I + Y
Sbjct: 25 KLTWIWIEESTELKENDIDILDDRLRGILPNENLYYQITFTFNPVSSTHWIKKKYFDIEH 84
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D T ++ +R++ + GE G + +
Sbjct: 85 PDIFTHHSTYLTNRFIDDAYHRRMMLRKEQDPEGYQVYGEGDWGEIGGVILKNYRVHDFD 144
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
DFG++H A W +D ++ + Y + T A K
Sbjct: 145 TSFERFDSMNHSQDFGFNHANAILTGGW-KDGELYICNEIYVHEKDTNEIIEIADKQGLN 203
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ + +++ G K N V+A I +
Sbjct: 204 KRLFMYCDSAE-------PDRIKMWKKAGYKAT----AVVKNPNSVKAQIDYLKTL 248
>gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1]
gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1]
Length = 461
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/253 (15%), Positives = 84/253 (33%), Gaps = 24/253 (9%)
Query: 10 KWQSNTVHYVWFDE--EPPEDV----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++ DE +DV Y + L R+ A + ++ +G + + +
Sbjct: 143 RLIGVNAAWIVADEFDTTKQDVALAAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIFEV 202
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDI 122
S +++IR + H + YP + +A G + L SG ++ + +
Sbjct: 203 EKDSQKRLIRAKTTDNHHLPADFIDTLRSQYPANLIDAYLNGLFVNLTSGAVYKMFNREE 262
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS------DVIYVVKNYRCREQTPIF 176
++ ++ I GMDF A ++ R + D I+ V + TP
Sbjct: 263 NASTEEVQPEDTLIIGMDFNVTKMAAVVYVRRQRITENKEFLDEIHAVDEFVDLFDTPAM 322
Query: 177 HVAALKSWGKW----LPWAWPHDGL--QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
A + + +P + + AQ G ++ +
Sbjct: 323 IEAIEERYPDHCAAGRVVVYPDSSGKSRKTVNASSSDIAQLEDAGFEVEYDSVNPP---- 378
Query: 231 GVEAGISDMLDRM 243
V+ + M M
Sbjct: 379 -VKDRLIAMNTMM 390
>gi|160899533|ref|YP_001565115.1| PBSX family phage terminase large subunit [Delftia acidovorans
SPH-1]
gi|160365117|gb|ABX36730.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
SPH-1]
Length = 414
Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 69/233 (29%), Gaps = 18/233 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K SP + + + +V+ +
Sbjct: 125 IAWVDEAESVSEVAWQKLAPTVREQGSEIWVTWNPEKDGSPTDKRFRKEPPPNSKVVELN 184
Query: 76 INETPHYNE---QERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E QER+ D G I+ + +
Sbjct: 185 YSDNPWFPEVLDQERQADRDRLDDQTYAWVWDGAYR--ENSDAQILSGKYRVAEFEPQPG 242
Query: 133 WV-QIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
W G+D+G+ P A +++ + LP
Sbjct: 243 WDGPYFGLDWGFSQDPTAGVKCWVG--DGRLWIEYEAGKVGLENDDIADYVIQR---LPG 297
Query: 191 AWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVEAGISDML 240
H ++ D E +S R + LP+ + VE GI+ +
Sbjct: 298 IEQH-TVRADSARPETISHVKSKGRDGKRQCLPKLEAVEKWKGSVEDGIAHLR 349
>gi|49475449|ref|YP_033490.1| terminase large subunit protein [Bartonella henselae str.
Houston-1]
gi|49475495|ref|YP_033536.1| terminase large subunit protein [Bartonella henselae str.
Houston-1]
gi|49238255|emb|CAF27468.1| Terminase large subunit protein [Bartonella henselae str.
Houston-1]
gi|49238301|emb|CAF27516.1| Terminase large subunit protein [Bartonella henselae str.
Houston-1]
Length = 340
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + +++ +
Sbjct: 86 LCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRDNAPVERRFRFSNNEAIKR 145
Query: 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + + + +D + +G + + E I
Sbjct: 146 VEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAIQGAYYQKEMLAAEQEGRI 205
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q H+ L+
Sbjct: 206 GRVARDPLMQMRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGWLR 265
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + G + G+ V+ I +
Sbjct: 266 RNGYEKALMVLPHDGATKDRVHNVSFESALNDAGFETQVIPH---QGAGAVKMRIEAVRR 322
Query: 242 RM 243
+
Sbjct: 323 IL 324
>gi|257468179|ref|ZP_05632275.1| putative terminase large subunit - phage associated protein
[Fusobacterium ulcerans ATCC 49185]
gi|317062464|ref|ZP_07926949.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185]
gi|313688140|gb|EFS24975.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185]
Length = 429
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 68/202 (33%), Gaps = 18/202 (8%)
Query: 45 TLTLTPLK-GRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHE--RE 100
+ P + + + + Y ++ + V T + P+ + + ++ +
Sbjct: 171 FFSYNPPREKQHWVNQKYSFSTKPQNTFVHHSTYLDNPYISTEFKEDAQATKEKDPTTYR 230
Query: 101 ARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSD 159
GE ++G G I I +I G+D+G+ P A G W+
Sbjct: 231 GEFLGE-VVGQGIIPFPNLILRKITDQEIRSFDNFRNGIDWGYGVDPVAFGRWHWDSMRR 289
Query: 160 VIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
++Y V + +++ + + + D + ++ R G++ +
Sbjct: 290 ILYAVDEFYGIQKSNRELATYINKKKYR-------EIITCDSAEPKSIAE-MRSYGVRAV 341
Query: 220 PECATFDDGSNGVEAGISDMLD 241
+ G VE G + +
Sbjct: 342 ----SAKKGKGSVEYGEKWLSE 359
>gi|255590727|ref|XP_002535346.1| conserved hypothetical protein [Ricinus communis]
gi|223523385|gb|EEF27037.1| conserved hypothetical protein [Ricinus communis]
Length = 799
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 16/224 (7%)
Query: 30 YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKR 89
+ R + ++ P P+ ++ ++ ++I + + P +N
Sbjct: 368 WTCSCRRSGKETSEIWFSMNPELDTDPVYTTFIQKRPANARIIEVNWDRNPFWNAAMEAE 427
Query: 90 IIDS--YPLHEREARTKGEPILGS-GRIFPIVEEDIVINSLDIPEHWVQIGGMD----FG 142
+ S + + +G P G I+ I + P + G G
Sbjct: 428 RLRSKADDPDDYDHIWEGIPRSAVAGAIYRREMHVIATENRIRPLLADPVLGTHAVFDLG 487
Query: 143 WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAW-PHDGLQHDK 201
+ + + + L G W PHDG
Sbjct: 488 IDDKMSITISQADISGLRVVGFHE--DNNYAVEHYCEWLTDNGWKNSVIWLPHDGNARSV 545
Query: 202 RSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
++G + G ++ GVE GI + +++
Sbjct: 546 QTGLTTKQTVEKLGWQVETVP------DIGVEPGIKMVRTALKN 583
>gi|71065561|ref|YP_264288.1| PBSX family phage terminase large subunit [Psychrobacter arcticus
273-4]
gi|71038546|gb|AAZ18854.1| phage terminase, large subunit, PBSX family [Psychrobacter arcticus
273-4]
Length = 421
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 18/239 (7%)
Query: 7 GRDKWQSNT-VHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
D + + + W DE E + + L + V +T P S + +
Sbjct: 120 NLDSIKGKSRILLAWVDEAENVSEAAWRKLLPTVREDDSEVWITWNPENKGSATDKRFRQ 179
Query: 64 ASSSDRQVIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
++ M N+ P + EQER ++ +G + S +
Sbjct: 180 VEHE--FIVEMNHNDNPFFPDVLEQERLNDQENLDDATYRWIWEGAYLEASDAQIFNGKF 237
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + G P A + ++Y+
Sbjct: 238 VVREFERHPTWNGPYNGLDFGFSTDPTGATNSW--ESDGILYIEYEACKVGLEIDDTPDY 295
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
LK +P ++ L D E +S +R G+ P+ G VE GI+ +
Sbjct: 296 LKD---NIPGIEKYE-LIADNARPESIS-YLKRNGI---PKIKACVKGKGSVEDGIAHL 346
>gi|240850562|ref|YP_002971962.1| phage terminase, large subunit [Bartonella grahamii as4aup]
gi|240267685|gb|ACS51273.1| phage terminase, large subunit [Bartonella grahamii as4aup]
Length = 441
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 75/242 (30%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + + + +
Sbjct: 125 LCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVEKRFRFSDNEAIKR 184
Query: 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + + + +D + +G+ + + E I
Sbjct: 185 VEINWSDNPKFPKILNEARLDDLRNRPETYKHIWEGDYLKAVQGAYYQKEMLAAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q H+ L+
Sbjct: 245 GRVARDPLMQIRAFWDIGGTGAKADATAIWIAQFVGREIRVLNYYEAQGQPLSEHIGWLR 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + G + + G+ V+ I +
Sbjct: 305 QNGYEKALMVLPHDGATRDRVHNVSFESALNDAGFETQ---VIPNQGAGAVKMRIEAVRR 361
Query: 242 RM 243
+
Sbjct: 362 IL 363
>gi|49475696|ref|YP_033737.1| Phage related protein [Bartonella henselae str. Houston-1]
gi|49238503|emb|CAF27734.1| Phage related protein [Bartonella henselae str. Houston-1]
Length = 441
Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + +++ +
Sbjct: 125 LCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRDNAPVERRFRFSNNEAIKR 184
Query: 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + + + +D + +G + + E I
Sbjct: 185 VEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q H+ L+
Sbjct: 245 GRVARDPLMQMRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGWLR 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + G + G+ V+ I +
Sbjct: 305 RNGYEKALMVLPHDGATRDRVHNVSFESALNDAGFETQVIPH---QGAGAVKMRIEAVRR 361
Query: 242 RM 243
+
Sbjct: 362 IL 363
>gi|319646329|ref|ZP_08000559.1| phage terminase [Bacillus sp. BT1B_CT2]
gi|317392079|gb|EFV72876.1| phage terminase [Bacillus sp. BT1B_CT2]
Length = 425
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 38/237 (16%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSAS------ 65
V VW +E E D + E L R+ + + L+ P+ + +H+
Sbjct: 116 VSIVWVEECSEVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFV 175
Query: 66 -------------SSDRQVIRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILG 110
++ T ++ E +++ D S+ KG +
Sbjct: 176 LDDDELYKKKTIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRFGVN 235
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P E ++ + GMDFG+ A + + + ++Y+
Sbjct: 236 GKLVLPQFEVMEHEKVMNSIRAIDRPILKNGMDFGFVDSYNALVRMAIDHNQKILYIYWQ 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T LK + L ++ D + + +R+QG +M
Sbjct: 296 YYKNDTTDDKTAEDLKDLKRVL--------IKADSAEPKTIR-FFRQQGFRMKAAKK 343
>gi|52785229|ref|YP_091058.1| hypothetical protein BLi01464 [Bacillus licheniformis ATCC 14580]
gi|52347731|gb|AAU40365.1| putative protein [Bacillus licheniformis ATCC 14580]
Length = 425
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 38/237 (16%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSAS------ 65
V VW +E E D + E L R+ + + L+ P+ + +H+
Sbjct: 116 VSIVWVEECSEVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFV 175
Query: 66 -------------SSDRQVIRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILG 110
++ T ++ E +++ D S+ KG +
Sbjct: 176 LDDDELYKKKTIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRFGVN 235
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P E ++ + GMDFG+ A + + + ++Y+
Sbjct: 236 GKLVLPQFEVMEHEKVMNAIRAIDRPILKNGMDFGFVDSYNALVRMAIDHNQKILYIYWQ 295
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T LK + L ++ D + + +R+QG +M
Sbjct: 296 YYKNDTTDDKTAEDLKDLKRVL--------IKADSAEPKTIR-FFRQQGFRMKAAKK 343
>gi|52079856|ref|YP_078647.1| Phage terminase, large subunit [Bacillus licheniformis ATCC 14580]
gi|52003067|gb|AAU23009.1| Phage terminase, large subunit [Bacillus licheniformis ATCC 14580]
Length = 424
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 38/237 (16%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSAS------ 65
V VW +E E D + E L R+ + + L+ P+ + +H+
Sbjct: 115 VSIVWVEECSEVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFV 174
Query: 66 -------------SSDRQVIRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILG 110
++ T ++ E +++ D S+ KG +
Sbjct: 175 LDDDELYKKKTIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRFGVN 234
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIG---GMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
+ P E ++ + GMDFG+ A + + + ++Y+
Sbjct: 235 GKLVLPQFEVMEHEKVMNAIRAIDRPILKNGMDFGFVDSYNALVRMAIDHNQKILYIYWQ 294
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T LK + L ++ D + + +R+QG +M
Sbjct: 295 YYKNDTTDDKTAEDLKDLKRVL--------IKADSAEPKTIR-FFRQQGFRMKAAKK 342
>gi|254240165|ref|ZP_04933487.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192]
gi|126193543|gb|EAZ57606.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192]
Length = 342
Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 14/200 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
++ V VW +E + + I + LTL P + +A
Sbjct: 116 SIKSFEG--VDIVWVEEAQGVCKKSWDVLIPTIRKDGSEIWLTLNPAMDTDDTYVRFCAA 173
Query: 65 SSSDRQVIRMTINETPHYNE---QERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEE 120
D + + + P + + QER R S + E +G+P + G I+
Sbjct: 174 PDDDVWLCEINWRDNPWFPDVLNQERLRAKRSMSQEDYEHIWEGKPRTVAEGAIYRHEIL 233
Query: 121 DIVI----NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
D++ + D GW+ A R + ++ +T +
Sbjct: 234 DLMESGRVRPVPYDPLLPVHTVWDLGWND--AMTIGFVQRGPMDVRIIDYIEDSHRTLDW 291
Query: 177 HVAALKSWGKWLPWAWPHDG 196
+VA ++ +
Sbjct: 292 YVAQIEKRSYRWGIDYLAAR 311
>gi|163868206|ref|YP_001609414.1| phage related protein [Bartonella tribocorum CIP 105476]
gi|163869068|ref|YP_001610302.1| hypothetical protein Btr_2286 [Bartonella tribocorum CIP 105476]
gi|161017861|emb|CAK01419.1| phage related protein [Bartonella tribocorum CIP 105476]
gi|161018749|emb|CAK02307.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 442
Score = 82.9 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQG-----LVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + + +
Sbjct: 125 LCWVDEAEPVTETAWQTLIPTLREEGDGWRAELWVTWNPLRDNAPVESRFRFSDNEAIKR 184
Query: 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + + + +D + +G + + E I
Sbjct: 185 VEINWSDNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q H+ L+
Sbjct: 245 GRVARDPLMQIRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGWLR 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + G + + G+ V+ I +
Sbjct: 305 HNGYEKALMVLPHDGATRDRVHNVSFESALNDAGFETQ---VIPNQGAGAVKMRIEAVRR 361
Query: 242 RM 243
+
Sbjct: 362 IL 363
>gi|183600815|ref|ZP_02962308.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827]
gi|188019600|gb|EDU57640.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827]
Length = 413
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 17/229 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + + ++ M
Sbjct: 126 IAWVDEAESVSEIAWTKLAPTVREAGSEIWVTWNPEKDGSATDKRFRKEPPDNAIIVEMN 185
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E+ER + +G + S + + + D+ +
Sbjct: 186 YDDNPWFPSVLEEERLSDQSRLDPNTYAWIWEGAYLENSDKQVLANKYVVQSFPDDLWKQ 245
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ + G DFG+ ++ D D +Y+ + A + W
Sbjct: 246 ADRLLFGADFGFAKDPNTLIRMFILD-DCLYIEREAYGVGVELDHMPAFYDEIPEARKW- 303
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ D E +S +RQG + VE GI+ +
Sbjct: 304 ----PIKADSARPETIS-YLKRQGFNISAA----KKWQGSVEDGITYLR 343
>gi|313499430|gb|ADR60796.1| P-loop protein [Pseudomonas putida BIRD-1]
Length = 374
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 72/256 (28%), Gaps = 27/256 (10%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINA------------TQGLVTLTLTPLK 52
D + + + +V DE + + E L + + +G L + K
Sbjct: 124 NYDNLRGSGLFFVLVDEWADCSWAAWEEVLRPMLSTCQYTIPQTGESRKGGHALRIGTPK 183
Query: 53 GRSPIIEHYLSASS---SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPIL 109
G + + Y D + + T + + E +
Sbjct: 184 GFNHCYDTYRDGQPGGEPDHKSWQYTSLQGGNVPAVELDAARRKMDPRTFRQEYEAGFEN 243
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
+G ++ + S I GMDF A ++V + + + +
Sbjct: 244 YAGVVYSTFDRAECHTSERIKPGEAIHIGMDFNVMKMAAVVYVVRD---GLPLALDEFHS 300
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPECATFDD 227
TP + +P Q+ + E + ++ G ++ +
Sbjct: 301 VRDTPDMIEKIKVRFSGHSVSVYPDASGQNTSSKNASESDLSLLKKAGFTVVVDSKNP-- 358
Query: 228 GSNGVEAGISDMLDRM 243
GV+ I+ +
Sbjct: 359 ---GVKDRINAVNAMF 371
>gi|153955889|ref|YP_001396654.1| hypothetical protein CKL_3280 [Clostridium kluyveri DSM 555]
gi|219856242|ref|YP_002473364.1| hypothetical protein CKR_2899 [Clostridium kluyveri NBRC 12016]
gi|146348747|gb|EDK35283.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569966|dbj|BAH07950.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 450
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/237 (12%), Positives = 71/237 (29%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQG--LVTLTLTPLKGRSPIIEHYLSASSS---- 67
V VW +E E + + E L R+ + L+ P+ + +H+
Sbjct: 117 VSIVWIEECSEVKYEGFKELLGRLRHPSLSLHMILSTNPVSKDNWTYKHFFKNEKKKTFI 176
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILG 110
+ ++ + +++ + Y + KG +
Sbjct: 177 LDDEELYKKRIVVRNNTYYHHSLADDNLFLPKSYIEQLEELKTYDIDLYRIARKGRFGIN 236
Query: 111 SGRIFPIVEEDIVINSLD---IPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
R+ P E L ++ ++ G DFG+ A L + ++Y+
Sbjct: 237 GRRVLPQFEARPHYEVLQAIGNIKNPIKRVGFDFGFEDSYNALLRLAVDDKEKILYIYWE 296
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T + + + ++ D + + + +QG +
Sbjct: 297 YYKNQMTDDRTAIEIAEFKS------TQELIRADGAEPKTIK-YFNQQGFNIRRAKK 346
>gi|326336497|ref|ZP_08202667.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691370|gb|EGD33339.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 390
Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 28/245 (11%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGR-SPI 57
+ + K + ++ +E E + + R + P +
Sbjct: 103 FFSTD-SEQKLRGRKRDVLYVNEANELKFIEFQQLKMRTTQ---FTIVDYNPSFSNDHWL 158
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
E T + P + I + + G
Sbjct: 159 CEL---NKDPRTYHFISTYKDNPFLEQTVIDEIESLQHKNRSLWQVYGLGQQAMIEGLIF 215
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+ IV + + G+DFG+ P A + + +Y+ + +
Sbjct: 216 EKVTIVEEIPIWAK--KRYLGLDFGFTHDPTAIVEVA--FLDNKVYIDEICYQTQMLTTD 271
Query: 177 HVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ AL+ + +L + + G + G V G+
Sbjct: 272 IIEALR--PYRIYKIISESA-------DPRLVKEIKNAGYNIT----AVTKGHGSVMEGL 318
Query: 237 SDMLD 241
+ ML+
Sbjct: 319 TKMLE 323
>gi|226949592|ref|YP_002804683.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
A2 str. Kyoto]
gi|226841691|gb|ACO84357.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
A2 str. Kyoto]
Length = 451
Score = 82.1 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/237 (12%), Positives = 78/237 (32%), Gaps = 36/237 (15%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSASSS---- 67
V +W +E E + E L R+ + + L+ P+ + +H+ +
Sbjct: 117 VSIIWIEECSEVKYAGFKELLGRLRHPTLELHMILSTNPVSKNNWCYKHFFMDTKKKIFI 176
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILG 110
+ ++ + +++ + +Y + +G +
Sbjct: 177 LDDKELYKNRIIIKNNTYYHHSLADDNLFLPKTYIEQLDELKTYDIDLYRIARRGRFGVN 236
Query: 111 SGRIFPIVEEDIVINS---LDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
++ P E+ + ++ + GMDFG+ A L + ++ ++Y+
Sbjct: 237 GRKVLPQFEKKPHYEVLQAIQNIKNSIYRVGMDFGFETSYNAIVRLAIDDENKILYIYWQ 296
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
Y + T + + K + ++ D + + Y+++G M
Sbjct: 297 YYKNQMTDDKTAIEIAEFKK------TQELIRSDSAEPKTIK-YYKQEGFNMRGAKK 346
>gi|183598507|ref|ZP_02960000.1| hypothetical protein PROSTU_01901 [Providencia stuartii ATCC 25827]
gi|188020684|gb|EDU58724.1| hypothetical protein PROSTU_01901 [Providencia stuartii ATCC 25827]
Length = 411
Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 17/229 (7%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE E + + + + +T P K S + + + V+ M
Sbjct: 126 IAWVDEAESVSETAWTKLTPTVREAGSEIWVTWNPEKDGSATDKRFRKKQPDNAIVVEMN 185
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E+ER +G + S + + + D+ +
Sbjct: 186 YDDNPWFPSVLEEERLNDQARLDAATYAWIWEGAYLENSDKQVLANKYVVQSFPDDLWKK 245
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ + G DFG+ ++ D D +Y+ + A + W
Sbjct: 246 ADRLLFGADFGFAKDLNTLIRMFILD-DCLYIEREAYGVGVELDHMPAFYDEIPEARKW- 303
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ D E +S +RQG + VE GI+ +
Sbjct: 304 ----PIKADSARPETIS-YLKRQGFNISAA----KKWQGSVEDGITYLR 343
>gi|284164527|ref|YP_003402806.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511]
gi|284014182|gb|ADB60133.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511]
Length = 514
Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 85/258 (32%), Gaps = 34/258 (13%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRINATQGLV--TLTLTPLKGRSPIIE 59
+++ + +W DE D+ R+ G TLT
Sbjct: 177 SWNRYAGDEFGAIWLDEPSHYETDLHDLLEMLGGRLRGVAGPKVQCWTLTGNGYNDAWEI 236
Query: 60 HYLSASSSD------RQVIRMTINETPHYNEQERKRIIDSYPLHERE-ARTKGEPILGSG 112
S+ +++R + + P+ + R+R + +RE +G G
Sbjct: 237 LEQRQDSTGDPIGLAIELVRASTLDNPYLDAGTRERYERQFGDTDREAQALRGGFAAAQG 296
Query: 113 RIFPIVEEDIVINSL----DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
++ D + D ++ G D GW+ P + D + V+ +
Sbjct: 297 LVYTKFSRDTHVIPHAAATDRVIADWRVYGYDHGWNDPRILLEVGKTP-RDQLVVLDEFY 355
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
E +A L++ GK + H+ ++RR G + +
Sbjct: 356 ESESHVEDAIAWLEATGKPSGSVYCD----HEPGH----IDKFRRAGYR-------AEAA 400
Query: 229 SNGVEAGISDMLDRMRSG 246
+ ++ GI+++ R+ +
Sbjct: 401 TKDIDEGIAEVRKRLEAD 418
>gi|37526791|ref|NP_930135.1| hypothetical protein plu2901 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786223|emb|CAE15275.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 409
Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 72/230 (31%), Gaps = 19/230 (8%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE E + + + + + +T P K S + ++ M
Sbjct: 127 LAWIDEAESVSETAWKKLRPTVRESGSEIWVTWNPEKDGSATDKRLRKKPPKSSIIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E+ER+ ++S + +G + S + + I D+
Sbjct: 187 YSDNPWFPDVLEEERQEDLESLDHSDYAWIWEGAYLENSEKQVLANKYKIESFPDDLWMQ 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ + G DFG+ + ++ D+ +Y+ + L +
Sbjct: 247 ADRLLFGADFGFARDPSTLLRMFILDN-CLYIDREAYSVGV-------ELDHMPAFYDQV 298
Query: 192 WPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ + + +RQG + VE GI+ +
Sbjct: 299 PESRKWPIKADSARPETISYLKRQGFNISAA----KKWQGSVEDGITFLR 344
>gi|331091430|ref|ZP_08340268.1| PBSX family phage terminase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330403986|gb|EGG83536.1| PBSX family phage terminase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 441
Score = 81.7 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 72/279 (25%), Gaps = 40/279 (14%)
Query: 10 KWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K Q ++ Y + DE +V+ +R++ + P + + +L
Sbjct: 108 KIQGASIKYCYGDEVAKWNKEVFQMLKSRLDKPYSCFDGSCNPEHPTHWL-KEFLDNDEL 166
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLH-EREARTKGEPILGSGRIFPIVEEDIVINS 126
D + R TI + P E+ +++ Y + G G I+ ++
Sbjct: 167 DIYLQRYTIFDNPFLPEEFVQQLCKEYEGTIYYDRLILGLWKRAEGAIYKRFADNPDKFR 226
Query: 127 LDIPEHWVQIGGM----------------DFGWHHPFAAGHLVWNRDSDVIYVVK----- 165
++ + + G + + D + +K
Sbjct: 227 CEVVDELTMETDIKQFRKDDIVSIEIGLDFGGNQSGHSFVARGYTDDYREVIALKSKRIM 286
Query: 166 -----NYRCREQTPIFHVAALKSWGKWLPWAWPH---------DGLQHDKRSGEQLSAQY 211
++ + + +D L
Sbjct: 287 AKDENEDIDSNTLDRLFCEFVQEVIDKYAVIVRRGDYVEYCNVESVYYDNAETV-LGNSI 345
Query: 212 RRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
R K P + + I + M +GR+ +
Sbjct: 346 RNAVEKKYPWVSVRKAKKKTINDRIRCTVKLMGAGRFFI 384
>gi|313116026|ref|ZP_07801450.1| phage terminase, large subunit, PBSX family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310621623|gb|EFQ05154.1| phage terminase, large subunit, PBSX family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 424
Score = 81.7 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 33/265 (12%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPII----- 58
+ NT + E E E E R ++ V L P
Sbjct: 116 DEKLIKGNTYGTAYITEANECSETFIKEVFDRTLSSPDRKVFHDLNPKAEGHWYYENILN 175
Query: 59 ---EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPL--HEREARTKGEPILGSGR 113
+ TI + ++ + + ++ +Y G+ G
Sbjct: 176 LHEKKQNENPEYGFNYGHFTIADNMSISDDQLRAVLATYDRSTVWYARDILGKRKAAEGL 235
Query: 114 IFPIV---EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
++P ++ + + +D+G H+P + G V + D + + ++Y
Sbjct: 236 VYPFFSAGQDTYLFHGDASHIDGQFYVSIDYGTHNPCSMGLWVIH-DGKALRIKESYFDS 294
Query: 171 -----EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
++T H A L+ K S RR G +
Sbjct: 295 RAERVQRTDEEHYAELERLTKGYYIQAVVV-----DPSAASFIETIRRHGKYL------V 343
Query: 226 DDGSNGVEAGISDMLDRMRSGRWKV 250
N V GI + M++G +
Sbjct: 344 IPADNDVLNGIRCVASLMQAGLVTI 368
>gi|126015320|gb|ABN70691.1| terminase [Salmonella phage SETP7]
gi|126015322|gb|ABN70692.1| terminase [Salmonella phage SETP11]
Length = 423
Score = 81.7 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 74/251 (29%), Gaps = 29/251 (11%)
Query: 21 FDEEPPED------VYFEGL----------TRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
DE + + + + I T +G + + ++
Sbjct: 122 IDELDTLNKDHAEHAWNKVIARNRQLPRTYRPITPKPANTVSVFTTPEGFRFVHDRWVVK 181
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDIV 123
+ ++I+ P E + + D+YP +A GE + L SG ++ +
Sbjct: 182 KNPGYEMIQAPTTSNPFLPEDYVQSLRDTYPGQLIDAYIDGEFVNLTSGSVYYAYDRRKN 241
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI---FHVAA 180
+ I G DF H + V+ + V + V TP
Sbjct: 242 SSRETIQPGETLYIGQDFNVGHMAS---TVYVQREYVWHAVAELVDMFDTPDVVREITER 298
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSG-EQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K G + G AQ + G ++ + V+ ++ +
Sbjct: 299 WKRNGHHIVMYPDASGKNRKSTDASTSDIAQLQNAGFEIRAKSVNP-----AVKDRVASV 353
Query: 240 LDRMRSGRWKV 250
+ SGR V
Sbjct: 354 NKALESGRLMV 364
>gi|266622260|ref|ZP_06115195.1| phage terminase, large subunit, PBSX family [Clostridium hathewayi
DSM 13479]
gi|288866024|gb|EFC98322.1| phage terminase, large subunit, PBSX family [Clostridium hathewayi
DSM 13479]
Length = 373
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 68/257 (26%), Gaps = 30/257 (11%)
Query: 1 LKAYEQGRDKWQSNT-----VHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLT 49
+ + K +S Y+WF+E D + L R Q V +
Sbjct: 60 FRGAD-DPQKIKSVKLANGYFKYIWFEERAEFDGDSEERTILQSLMR-GGPQYFVFYSWN 117
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRMTINET---PHYNEQERK-RIIDSYPLHEREARTKG 105
P K + + + S + V ++ + + E G
Sbjct: 118 PPKSMNSWVNQDILQSKENAIVHHSDYRTVPKEWLGDDFFIEAEDLKETKPKAYEHEYLG 177
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG-WHHPFAAGHLVWNRDSDVIYVV 164
G+G I ++ G+DFG P A + ++R +++
Sbjct: 178 I-ATGTGGQVFENVTVRPITEEEMARFDRIYQGLDFGFGADPAAYIKMHYDRTRKRLFLF 236
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+K + + G++++
Sbjct: 237 GEIYAPRLGNTKLADQIKKYNPLNRVVTADS-------EDPRAIDALNELGLRVVGAR-- 287
Query: 225 FDDGSNGVEAGISDMLD 241
G V+ G+ + D
Sbjct: 288 --KGPGSVDFGMEFLAD 302
>gi|261368738|ref|ZP_05981621.1| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
gi|282569160|gb|EFB74695.1| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
Length = 417
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 25/240 (10%)
Query: 15 TVHYVWFDEEPPE-------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
+ +WF+E + R GL ++ P Y
Sbjct: 133 YIGVLWFEEADQIKGGEDAVRNVQQSALR-GGEFGLTFISFNPPSAARNWANKYALVQRP 191
Query: 68 DRQVIRMTINETP--HYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
++V + E P + + + GE +G+G
Sbjct: 192 GKRVHHSSYLEAPPEWLGPKFLAQAEYIKETKPTKYRHEYLGE-AVGNGTQVFDNIRLEE 250
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+++ I + G+D+GW+ P+A ++ + +Y+ + +
Sbjct: 251 LSAKRIRSFGDALNGVDWGWYPDPWAFNRCAYDAHARTLYIFDELTRLKTNNQDTAKLVM 310
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ YR G++ G V + +
Sbjct: 311 QRIEGWETVTADSAEPKSCGD-------YRDAGIRCREA----VKGPGSVTESMKWLQGL 359
>gi|62327323|ref|YP_224036.1| hypothetical protein BPKS7gp16 [Salmonella phage SS3e]
gi|57472357|gb|AAW51219.1| hypothetical protein [Salmonella phage SS3e]
Length = 423
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 75/251 (29%), Gaps = 29/251 (11%)
Query: 21 FDEEPPED------VYFEGL----------TRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
DE + + + + I T +G + + +
Sbjct: 122 IDELDTLNKDHAEHAWNKVIARNRQLPRTYRPITPKPANTVSVFTTPEGFRFVHDRWAVK 181
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDIV 123
++I+ + P E + + D+YP +A GE + L SG ++ +
Sbjct: 182 KKPGYEMIQASTTSNPFLPEDYVQSLRDTYPGQLIDAYIDGEFVNLTSGSVYYAYDRRKN 241
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ I G DF H + V+ + V + V TP +
Sbjct: 242 SSRETIQPGETLYIGQDFNVGHMAS---TVYVQREYVWHAVAELVDMFDTPDVVREITER 298
Query: 184 WGKWLPWAWPH---DGLQHDKRSG-EQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
WG+ + G AQ + G ++ + V+ ++ +
Sbjct: 299 WGRQGHHIVMYPDASGKNRKSTDASTSDIAQLQNAGFEIRAKSVNP-----AVKDRVASV 353
Query: 240 LDRMRSGRWKV 250
+ SGR V
Sbjct: 354 NKALESGRLMV 364
>gi|154504704|ref|ZP_02041442.1| hypothetical protein RUMGNA_02211 [Ruminococcus gnavus ATCC 29149]
gi|153795186|gb|EDN77606.1| hypothetical protein RUMGNA_02211 [Ruminococcus gnavus ATCC 29149]
Length = 442
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 74/279 (26%), Gaps = 40/279 (14%)
Query: 10 KWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K Q ++ Y + DE +V+ +R++ T P + + ++
Sbjct: 108 KIQGASIKYCYGDEIAKWNKEVFQMLKSRLDKTYSCFDGACNPEHPTHWL-KEFIDNVEL 166
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLH-EREARTKGEPILGSGRIFP---------- 116
D + + TI + P + + K++ Y + G G I+
Sbjct: 167 DIYLQKYTIFDNPFLDPEFVKQLCKEYDGTIYYDRLILGLWKRADGAIYKRFADNPEAFK 226
Query: 117 -----IVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVV------ 164
D + G+DFG + + + + + +
Sbjct: 227 CEIVDEFSPDSEYKQFRKEDITSIEIGLDFGGNQSGHSFVARGYTDNYRDVIALKSRRIT 286
Query: 165 ----KNYRCREQTPIFHVAALKSWGKWLPWAWPH---------DGLQHDKRSGEQLSAQY 211
K + ++ + + + D L
Sbjct: 287 AKDEKEDIDSNRLNELFCEFIREVIEQYSVCVKSGDYVQYCNVESVFWDNAETV-LGNSI 345
Query: 212 RRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
R K P A + I + M +GR+ +
Sbjct: 346 RNAVEKEFPWIAVKPAKKRPINDRIRCTVKLMGAGRFFI 384
>gi|315160135|gb|EFU04152.1| terminase, large subunit domain protein [Enterococcus faecalis
TX0312]
Length = 237
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 74 MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI---VINSLDIP 130
T + P + + + + + + A + + + P + I +
Sbjct: 1 STYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCITDEMVA 60
Query: 131 EHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP 189
G+DFG+ P A +++ + IY + + + L G
Sbjct: 61 NFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNRELAKKLHEKG---- 116
Query: 190 WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ +D + D + + G+ G + VE G + D
Sbjct: 117 --YQNDEIFSDSAEPKSNAELVNEHGIN---HIKGVKKGPDSVEYGEQWLDDL 164
>gi|319408093|emb|CBI81746.1| phage related protein [Bartonella schoenbuchensis R1]
gi|319408856|emb|CBI82513.1| phage related protein [Bartonella schoenbuchensis R1]
Length = 444
Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 73/242 (30%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + +
Sbjct: 128 LCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVERRFRFTKDQNIKG 187
Query: 72 IRMTINETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + ++ ++ +D +G+ + + E +
Sbjct: 188 VEVNWSDNPLFPQKLQRVRLDDLQNRPESYNHIWEGDYLKAVQGAYFQKEMLAAEQEGRV 247
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q H+ L+
Sbjct: 248 GRVARDPLMPIRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGWLR 307
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + G + G+ V+ I +
Sbjct: 308 CNGYDKALMVLPHDGATRDRVYNVSFESALNEAGFDTQ---VVPNQGAGAVKMRIEAVRR 364
Query: 242 RM 243
+
Sbjct: 365 IL 366
>gi|237737295|ref|ZP_04567776.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229421157|gb|EEO36204.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 446
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/279 (10%), Positives = 69/279 (24%), Gaps = 50/279 (17%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEP--PEDVYFEGLTRINATQGLV--TLTLTPLKGRS 55
K + K +S + Y+ +E D E R+ + P+ S
Sbjct: 104 FKGMD-DWRKLKSVKNIDYILIEEADELTIDDIKELRKRLRVKNIRCKLIMMCNPVSRGS 162
Query: 56 PIIEHYLSASSSDR-----------------------------QVIRMTINETPHYNEQE 86
I + + + + + T + PH
Sbjct: 163 SIYKMFFTEQGYNIDENELYEKRLIKFTDKIILENGEILKQVVMIHHSTYKDNPHLPASF 222
Query: 87 RKRIIDSYPLHEREARTKGEPILGSGRIFP---IVEEDIVINSLDIPEHWVQIGGMDFGW 143
+ + +G+ + ++ Q G+D+G+
Sbjct: 223 IYELESEKDPRLKRIAKEGKFGADGDLVLYNAVFEKQVYEKYIEGKLGKKDQYRGIDWGY 282
Query: 144 H-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR 202
+ N + +Y+ Y + + L+ + + D
Sbjct: 283 STSYTCGLKMAVNTKLNELYIYWEYYNKGKLTKELFKELEPLKEGGKVIY------ADSA 336
Query: 203 SGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
S + ++ + G + G+ VE +
Sbjct: 337 SAQTIAD-FYDAGYNIDGA----TKGNGSVEYHEQLLRS 370
>gi|325529303|gb|EGD06247.1| phage terminase, large subunit [Burkholderia sp. TJI49]
Length = 411
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 62/240 (25%), Gaps = 20/240 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPIIEHYL-S 63
+ WF+E L R + + P K PI
Sbjct: 109 SIKSLEG--FDRAWFEEAQNATEKSLTLLRPTLRKPGSQLWFGWNPGKPTDPIDVLLRGD 166
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEED 121
D V+ + P + ++ + + G S
Sbjct: 167 EPPPDSIVVEANFMDNPWLPRELQEEMEYDKRRDPDKYAHVWLGGYQQRSEARVFKNWRV 226
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ PE V G D+G+ + + D + +YV +
Sbjct: 227 ---EEFERPEGTVFRLGADWGFASDPSVLI-RCDIDGNRLYVDYEAYQVGCEIVNLPELF 282
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
S + W + D E +S ++ G P+ G+ +E G+ +
Sbjct: 283 MSVPEAEKW-----PITADSARPETIS-HMQKHGF---PKIRAAIKGAKSLEEGVEFLKS 333
>gi|319405798|emb|CBI79424.1| phage related protein [Bartonella sp. AR 15-3]
Length = 441
Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 19/242 (7%)
Query: 18 YVWFDEEPPE-DVYFEGLTRINATQG-----LVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
W DE P + ++ L +G + +T PL+ +P+ + + + +
Sbjct: 125 LCWVDEAEPVTETAWQTLIPTLREEGDGWRAELWVTWNPLRENAPVERRFRFSENEGIKG 184
Query: 72 IRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFP-------IVEEDI 122
+ + ++ P + + + +D + +G + + E I
Sbjct: 185 VEINWSDNPKFPQILNEARLDDLKNRAESYQHIWEGGYLKAVQGAYFQKEMLAAEQEGRI 244
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+ D + A + I V+ Y + Q H+ L+
Sbjct: 245 GRVARDPLMQLRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGWLR 304
Query: 183 SWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G PHDG D+ + G + + G V+ I +
Sbjct: 305 QNGYEKALMILPHDGATKDRVHNVSFESALNEAGFETQ---VIPNQGPGAVKMRIEAVRR 361
Query: 242 RM 243
+
Sbjct: 362 IL 363
>gi|157693524|ref|YP_001487986.1| terminase large subunit [Bacillus pumilus SAFR-032]
gi|157682282|gb|ABV63426.1| terminase large subunit [Bacillus pumilus SAFR-032]
Length = 437
Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 34/227 (14%)
Query: 24 EPPEDVYFEGLTRINATQGLVTL--TLTPLKGRSPIIEHYLSASS--------------- 66
E + + E L R+ + + + P+ + H+
Sbjct: 129 EVSYEGFKELLGRLRHPSLPLYMMLSTNPVGQDNWTYRHFFRDEQLKRFVLDDETLYKKR 188
Query: 67 ----SDRQVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILGSGRIFPIVEE 120
D T + + K++ + Y KG + ++FP E
Sbjct: 189 TVVIKDTYYHHSTAEDNLFLPKSYVKQLDELKEYDPDLYRIARKGYFGINGTKVFPQFEV 248
Query: 121 DIVINSLDIPEHWVQI---GGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+ L+ + + GMDFG+ A L + + +Y+ Y R +T
Sbjct: 249 RNHADVLEAIQQMDRPLKRAGMDFGFVESYNALIRLAVDHEKKYLYIYWEYYNRGKTDDE 308
Query: 177 HVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
LK + + ++ D + + +R+ G +M+
Sbjct: 309 TAVDLKEF------IESKELIKADAAEPKTIH-YFRQLGFQMVAAHK 348
>gi|260753099|ref|YP_003225992.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|258552462|gb|ACV75408.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 428
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/250 (13%), Positives = 65/250 (26%), Gaps = 18/250 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYF-EGLTRINAT-QGLVTLTLTPLKGRSPIIEHYLSA 64
+ + W +E E L T + + P P+
Sbjct: 114 SIKSLEGFSR--AWVEEAQTLSQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGE 171
Query: 65 SSS-DRQVIRMTINETPHYNE--QERKRIIDSYPLHEREARTKGEPILGSGRIFP----- 116
+ V++ P + + +R + + +G + +
Sbjct: 172 TPPTGAVVVQANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALA 231
Query: 117 --IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
E+ I + + D + + A + I + +Y + Q
Sbjct: 232 KARSEKRIAVVAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPL 291
Query: 175 IFHVAALKSWGKW-LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H+ L+S PHDG QHDK + R G + + G+
Sbjct: 292 SAHLHWLRSHDYGGALCILPHDGAQHDKIASTTYEGALREAGFSVR---VIPNQGAGAAM 348
Query: 234 AGISDMLDRM 243
I
Sbjct: 349 QRIEAARRLF 358
>gi|225419807|ref|ZP_03762110.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme
DSM 15981]
gi|225041548|gb|EEG51794.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme
DSM 15981]
Length = 686
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 71/240 (29%), Gaps = 21/240 (8%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +W +E + + R + + P K S Y+
Sbjct: 402 YIGILWLEELDQFVGPESVRKIEQSVIRGGDV-AYIFKSFNPPKSASNWANKYIKIPKDS 460
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEPIL-GSGRIFPIVEEDIVIN 125
R V T + P + + + + GSG + I
Sbjct: 461 RLVTESTYLDVPQKWLGKPFLDEAEFLKETNSDAYENEYMGVANGSGGSVFDNVKIREIT 520
Query: 126 SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+I + + G+D+GW+ P+A ++ +Y+ + Y C +Q+ L
Sbjct: 521 DDEIAQFDHVLNGVDWGWYPDPYAFTRSHYDPARHTLYIWQEYTCNKQSNQQTAEKLIEL 580
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
G +D + D + + YR G+ P + G E +
Sbjct: 581 G-----ISGNDLITCDSAEEKSVGD-YRAYGLLARPA----EKGPGSREYSFKWLQSLRE 630
>gi|241760933|ref|ZP_04759022.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241374552|gb|EER64013.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 428
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/250 (13%), Positives = 65/250 (26%), Gaps = 18/250 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYF-EGLTRINAT-QGLVTLTLTPLKGRSPIIEHYLSA 64
+ + W +E E L T + + P P+
Sbjct: 114 SIKSLEGFSR--AWVEEAQTLSQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGE 171
Query: 65 SSS-DRQVIRMTINETPHYNE--QERKRIIDSYPLHEREARTKGEPILGSGRIFP----- 116
+ V++ P + + +R + + +G + +
Sbjct: 172 TPPTGAVVVQANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALA 231
Query: 117 --IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
E+ I + + D + + A + I + +Y + Q
Sbjct: 232 KARSEKRIAVVAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPL 291
Query: 175 IFHVAALKSWGKW-LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H+ L+S PHDG QHDK + R G + + G+
Sbjct: 292 SAHLHWLRSHDYGGALCILPHDGAQHDKIASTTYEGALREAGFSVR---VIPNQGAGAAM 348
Query: 234 AGISDMLDRM 243
I
Sbjct: 349 QRIEAARRLF 358
>gi|326789924|ref|YP_004307745.1| phage terminase, large subunit, PBSX family [Clostridium
lentocellum DSM 5427]
gi|326540688|gb|ADZ82547.1| phage terminase, large subunit, PBSX family [Clostridium
lentocellum DSM 5427]
Length = 419
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/267 (14%), Positives = 78/267 (29%), Gaps = 38/267 (14%)
Query: 10 KWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + +++ Y + DE +V+ +R++ L P + E S++
Sbjct: 107 KLRGSSIKYCYGDEVADWSKEVFEMLKSRLDKPYSCFDGALNPQNPTHWLKE--FLDSNA 164
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPL-HEREARTKGEPILGSGRIFPIV-------- 118
D + TI + P + + + + Y + KG G I+
Sbjct: 165 DIYLQTYTIFDNPFLDPKFVEELCKEYEGTVYYDRYIKGLWKRAEGAIYRKFADNPKAFY 224
Query: 119 -------EEDIVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVVKNYRCR 170
+DI + + G+DFG + A R + ++++ R
Sbjct: 225 CKIVDHISDDIGVKQILKSSIMEICVGVDFGGNKSGHAFVVTAKTRGYKDLILLRSERHF 284
Query: 171 EQ---------TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
+ F L +G W + + + + +Y P
Sbjct: 285 GELLSDDLNNLLLEFIAKVLAEYGPIDYVYWDNAETVLGRGIKKAIGDKY--------PS 336
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRW 248
V I M S R+
Sbjct: 337 ITVRPAIKETVNDRIRCTTMLMGSARF 363
>gi|315159929|gb|EFU03946.1| terminase, large subunit domain protein [Enterococcus faecalis
TX0312]
Length = 227
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 13/173 (7%)
Query: 74 MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI---VINSLDIP 130
T + P + + + + + + A + + + P + I
Sbjct: 1 STYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCITDEMAA 60
Query: 131 EHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP 189
G+DFG+ P A +++ + IY + + + KS G
Sbjct: 61 NFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNREFANKAKSKG---- 116
Query: 190 WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D + D + ++ G +P G + VE G + D
Sbjct: 117 --YISDRIAADSAEPKSIAELNSEHG---MPRVFGVKKGPDSVEYGEEWLGDL 164
>gi|146328895|ref|YP_001209648.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A]
gi|146232365|gb|ABQ13343.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A]
Length = 424
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 23/241 (9%)
Query: 16 VHYVWFDEEPPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
W +E L R I + + P PI + + +
Sbjct: 119 FDCAWIEEAQSISKRSLSLLRPTIRKQNSEIWASWNPQLKTDPIDQFLRVDCPENSITVA 178
Query: 74 MTINETPHYNEQERKRIIDSYPLHEREA---------RTKGEPILG--SGRIFPIVEEDI 122
+ + + P +E+ + D +R+A + S ++
Sbjct: 179 VNLRDNPFASEEIWREYRDDRERAKRKAAAGDKNAWGEFEHIWHGAYRSHSAAQVLAGCY 238
Query: 123 VINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ I HW G+D+G+ P + + V+Y+ + + L
Sbjct: 239 RVADFAIEPHWSIYHGVDWGFASDPTVLVRCYLDEAARVLYIAEEAYGEHVETVDVPQLL 298
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + + +L + R G ++ +E G+S +
Sbjct: 299 STITNSAQYV------IRADDARPELISHCRNHGFPLMRA---AGKWQGSIEDGVSFLRG 349
Query: 242 R 242
Sbjct: 350 L 350
>gi|56551275|ref|YP_162114.1| PBSX family phage terminase large subunit [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56542849|gb|AAV89003.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 428
Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/250 (13%), Positives = 65/250 (26%), Gaps = 18/250 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYF-EGLTRINAT-QGLVTLTLTPLKGRSPIIEHYLSA 64
+ + W +E E L T + + P P+
Sbjct: 114 SIKSLEGFSR--AWVEEAQTLSQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGE 171
Query: 65 SSS-DRQVIRMTINETPHYNE--QERKRIIDSYPLHEREARTKGEPILGSGRIFP----- 116
+ V++ P + + +R + + +G + +
Sbjct: 172 TPPTGAVVVQANWENNPWFPSPLDQERRDCLTNDPDKYRHIWEGGYAEITEGAYYAQALA 231
Query: 117 --IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
E+ I + + D + + A + I + +Y + Q
Sbjct: 232 KARSEKRIAVVAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPL 291
Query: 175 IFHVAALKSWGKW-LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
H+ L+S PHDG QHDK + R G + + G+
Sbjct: 292 SAHLHWLRSHDYGGALCILPHDGAQHDKIASTTYEGALREAGFSVR---VIPNQGAGAAM 348
Query: 234 AGISDMLDRM 243
I
Sbjct: 349 QRIEAARRLF 358
>gi|86741139|ref|YP_481539.1| putative phage-related terminase large subunit [Frankia sp. CcI3]
gi|86568001|gb|ABD11810.1| putative phage-related terminase large subunit [Frankia sp. CcI3]
Length = 240
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 16/183 (8%)
Query: 78 ETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIG 137
+ P + + + Y +G I+ G ++ + +ED ++
Sbjct: 2 DNPSLSPAYVEALKKEYVGLWYARFVEGRWIMAEGVVYDMWDEDRMVEDEIPSIVRWVGT 61
Query: 138 GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR-----CREQTPIFHVAALKSWGKWLPWAW 192
G+D G +PF A D + V + R++T + AL+ + +P
Sbjct: 62 GVDHGQVNPFNAIVGGIGVDRRLHLVAEYRYESKLARRQKTDAEYSMALQEFHAQVPIPG 121
Query: 193 PHDGLQHD-----KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGR 247
S Q R G+ + N V GI + M + R
Sbjct: 122 TSLRGVRPEYICVDPSAASFVTQLYRDGVS------GVMNADNAVLDGIRMVASLMGNDR 175
Query: 248 WKV 250
+V
Sbjct: 176 LRV 178
>gi|160915221|ref|ZP_02077434.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991]
gi|158433020|gb|EDP11309.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991]
Length = 444
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 70/252 (27%), Gaps = 29/252 (11%)
Query: 16 VHYVWFDEEPPE----DVYFEGLT------RINATQGLVTLTLTPLKGRSPIIEHYL--S 63
+ V DE + E L R N + P K + +
Sbjct: 131 IRLVVLDELTEFFDKGEGEDEILNIVATFVRGNDEDFRMMYLYNPPKNPKAPVNEWCRKM 190
Query: 64 ASSSDRQVIRMTINETP--HYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIFPIVE 119
+D I + P + GE + I+ + +
Sbjct: 191 EQRADCIHIHTDYRDVPMKWLGRKLIDEAEAMKLADFKMYRWIWLGEAVGLDDLIYYMFD 250
Query: 120 EDIVINSLDIPEHWV-QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT----- 173
E+ + + ++ G+D+G +P + + + I + Y +T
Sbjct: 251 EEHHVRKTNSEDNITLYGVGVDYGQMNPTTYQVVGLDFSNKRIQGLDEYYHCGRTSGRQK 310
Query: 174 -PIFHVAALKSWGKWLPWAWPH-DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
P + K + + H S L + +R L F D N
Sbjct: 311 SPSEYAKDFKDLIDSIYEQYGHKPVFCFIDPSARGLKEEIKR-----LCPEIQFPDVDNS 365
Query: 232 VEAGISDMLDRM 243
VE GIS + +
Sbjct: 366 VELGISRVQKLL 377
>gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism
MedDCM-OCT-S09-C20]
Length = 454
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/262 (12%), Positives = 79/262 (30%), Gaps = 23/262 (8%)
Query: 4 YEQGRDKWQ---SNTVHYVWFDEEPP------EDVYFEGLTRINATQGLVTLTLTPLKGR 54
Y Q + +Q + +DE + L R+ + + +G
Sbjct: 136 YCQSAENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLLARMRTGELNQLAVASTPEGF 195
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGR 113
++ D+++IR+ + PH + +YP +A +G + L S
Sbjct: 196 RWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSLERNYPSQLIQAYLEGHFVNLASCS 255
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCRE 171
++P + + E+ G+D + R D + YR +
Sbjct: 256 LYPEFDRSLNYCDTQPTENDTIWIGVDLNVGN---CVTQHLVRRGDEFHFFAEKVYRDTQ 312
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG---EQLSAQYRRQGMKMLPECATFDDG 228
Q + D + + E ++ G ++ + +
Sbjct: 313 QIAQGLKEMYPHHFRTGQLVLIPDAASKQRATAAAQESDIGILKKAGHQVKVQSSNPI-- 370
Query: 229 SNGVEAGISDMLDRMRSGRWKV 250
++ ++ + + + KV
Sbjct: 371 ---IQDRVNAVNALVEQRKIKV 389
>gi|251777966|ref|ZP_04820886.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082281|gb|EES48171.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 417
Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 20/238 (8%)
Query: 15 TVHYVWFDEEPPEDVY------FEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ Y+W++E + Y + L R + V + P + + + D
Sbjct: 132 YIKYIWYEEVDEFEGYDKIRNINQSLMR-GGPKFFVFYSFNPPESQRNWANLEVLDKRED 190
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDIVIN 125
+ + T P E D + + + G+G I+
Sbjct: 191 KLIHHSTYLTVPRDWLGEPFITEAEDLKEKNTTKYEHDYLGKVTGTGAEIFDNVVIRKIS 250
Query: 126 SLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
++ G+DFGW P+ ++ + ++ +Y+ +++ +
Sbjct: 251 DEEVRSFDRLYRGVDFGWFPDPWTYNNMYYKANTKELYIFDEAHENKKSNKQTYDIMVKK 310
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
P+ + D + ++ Y+ G+ G VE + +
Sbjct: 311 ----HGVKPNHKVTCDSAENKSIAD-YKTYGLYARGAI----KGQGSVEYSMKWLQSL 359
>gi|153815840|ref|ZP_01968508.1| hypothetical protein RUMTOR_02085 [Ruminococcus torques ATCC 27756]
gi|145846865|gb|EDK23783.1| hypothetical protein RUMTOR_02085 [Ruminococcus torques ATCC 27756]
Length = 441
Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 74/278 (26%), Gaps = 38/278 (13%)
Query: 10 KWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K Q ++ Y + DE +V+ +R++ + P + + +L
Sbjct: 108 KIQGASIKYCYGDEVAKWNKEVFQMLKSRLDKPYSCFDGSCNPEHPTHWL-KEFLDNIEL 166
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLH-EREARTKGEPILGSGRIFPIVEED----I 122
D + R TI + P E+ +++ Y + G G I+ ++
Sbjct: 167 DIYLQRYTIFDNPFLPEEFVQQLCKEYEGTIYYDRLILGMWKRAEGAIYKRFADNPDAYR 226
Query: 123 VINSLDIPEHWVQIGGM------------DFGWHHPFAAGHLVWNRDSDVIYV------- 163
++ G + + + +
Sbjct: 227 CEVVEELNPDAEVKQFRKEDITSIEIGLDFGGNQSGHSFVARGYTDNYRDVIALKSRRIM 286
Query: 164 -------VKNYRCREQTPIFHVAALKSWG----KWLPWAWPHDGLQHDKRSGEQLSAQYR 212
+ + + F ++ +G + + + + L R
Sbjct: 287 AKDENEDIDSNMLDKMFCDFVGEVIEEYGVVIRHGDYVEYCNVETVYYDNAETVLGNSIR 346
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
K P + + I + M +GR+ +
Sbjct: 347 NAVEKQYPWISVRKAKKATINDRIRCTVKLMGAGRFFI 384
>gi|212712338|ref|ZP_03320466.1| hypothetical protein PROVALCAL_03426 [Providencia alcalifaciens DSM
30120]
gi|212685084|gb|EEB44612.1| hypothetical protein PROVALCAL_03426 [Providencia alcalifaciens DSM
30120]
Length = 411
Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 17/229 (7%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE E + + + + +T P K S + + +S D + M
Sbjct: 127 LCWVDEAETVSETAWQKLDPTVREDNSEIWVTWNPEKDGSATDKRFRKNASDDCITVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E R++ + +G + S + + +I S D+ +
Sbjct: 187 YSDNPWFPSVLEGVRQKDRERLDDATYAWVWEGAYLENSEKQVLAGKYEIRSFSDDLWKK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ + G DFG+ + D D +Y+ A + W
Sbjct: 247 ADRLLFGADFGFAKDPNTLLRQFILD-DCLYIEYEMYGLGIELDHMPAFYDKIPESRKW- 304
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ D E +S RRQG + VE GI+ +
Sbjct: 305 ----SIKADSARPETIS-YLRRQGFNISAA----KKWQGSVEDGITFLR 344
>gi|295189275|gb|ADF83462.1| putative large terminase [Lactobacillus phage LBR48]
Length = 277
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 21/224 (9%)
Query: 22 DEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS--SSDRQVIRMTINET 79
DE + + + +TLT P R + + D T
Sbjct: 4 DELIKREKWKKEFF------KQITLTFNPWSERHWLKPMFFDPETRKPDVFARTTTFRVN 57
Query: 80 PHYNEQERKRIIDSYPLHEREART--KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIG 137
++Q+R+R +D Y + R A+ G + G +F + + + E
Sbjct: 58 EWLDKQDRQRYLDLYRTNPRRAQIVCDGNWGVAEGLVFENWVVEDFDVNKVVAESDGVGH 117
Query: 138 GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDG 196
GMDFG+ P NR++ I++ K + T L +
Sbjct: 118 GMDFGFTHDPTTFAEAAINRETKDIWIFKELYQKAMTTQDIFDWLDDN------HYLKSD 171
Query: 197 LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ D +L + + +G++ G + ++ GI+ +
Sbjct: 172 IGADCAE-PRLIDELQAKGVR---RMHASIKGPDSIDYGINFLQ 211
>gi|296117130|ref|ZP_06835723.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC
23769]
gi|295976225|gb|EFG83010.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC
23769]
Length = 404
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/245 (13%), Positives = 64/245 (26%), Gaps = 16/245 (6%)
Query: 1 LKAYEQGRDKWQS-NTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPI 57
+ + + +S V W +E L I A + T P + +P+
Sbjct: 99 FRGLGRNVEAIKSTEKVDICWVEEAQSLSRASLDILLPTIRAPGSEIWFTYNPEREDAPM 158
Query: 58 IEHYLS-ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP 116
+ + D V + + P + + E +
Sbjct: 159 HQMMRALRDDPDAIVRHVGWRDNPWFPPELDAERRRMLRHDPDSYDHVWEGECRTRSDAV 218
Query: 117 IVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ + + P G+D+G+ P D+++V
Sbjct: 219 VFGGHVEVAEFTTPPDARLYFGVDWGFARDPTVMVRCFI--ADDIVHVDHEVFATGVEMD 276
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
A W ++ D E +S R G +M V+ G
Sbjct: 277 DLAALFDHVPGAREW-----PVRADASRPETISYLATRFGFRMTAAA----KWPGSVQDG 327
Query: 236 ISDML 240
I+ +
Sbjct: 328 IARLR 332
>gi|304406787|ref|ZP_07388442.1| phage terminase, large subunit, PBSX family [Paenibacillus
curdlanolyticus YK9]
gi|304344320|gb|EFM10159.1| phage terminase, large subunit, PBSX family [Paenibacillus
curdlanolyticus YK9]
Length = 439
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 76/272 (27%), Gaps = 31/272 (11%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYLS 63
+ + N+ V+ E E + E R A+ + L P L
Sbjct: 116 DAARIKGNSYGTVYITEVNECHQSFVQEAFDRTLASSKRQLFFDLNPKPPSHWFYRDVLD 175
Query: 64 ASSS--------DRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSGR 113
T+ + + ++ +Y +A G+ +GR
Sbjct: 176 YQDELLKRGENSGYNYAHFTVMGNLSIPDDRLRAVLSTYDKGSLWYQADILGKRTAATGR 235
Query: 114 IFPIVEED---IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC- 169
I+ + + + G+D G A + + ++ Y
Sbjct: 236 IYTGYTSKDVVVTRSDIKDYRFIEFSIGIDIGGTDATVATLTGMTAKYENVVLLDGYYHK 295
Query: 170 ----REQTPIFHVAA----LKSWGKWLPWAWPHD---GLQHDKRSGEQLSAQYRRQGMKM 218
T + + W + P DK + L+ + RR+G+ +
Sbjct: 296 QGKESGFTHDRYAKEVVNKIVEWSETYPAFLSCAHIFAESADKLFRQALANELRRRGINI 355
Query: 219 LPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
A +G + I + GR+KV
Sbjct: 356 QVVAAYKKEG---IVDRIRLTNILINQGRYKV 384
>gi|13471711|ref|NP_103278.1| hypothetical protein msl1767 [Mesorhizobium loti MAFF303099]
gi|14022455|dbj|BAB49064.1| msl1767 [Mesorhizobium loti MAFF303099]
Length = 90
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K++E+GR+KWQ T+H VWFDEEPP D+Y EGLTR NAT G+ +T TPL G S ++
Sbjct: 18 FKSFEKGREKWQGETLHGVWFDEEPPLDIYSEGLTRTNATSGITIVTFTPLLGMSDVVLL 77
Query: 61 Y 61
+
Sbjct: 78 F 78
>gi|13471714|ref|NP_103281.1| hypothetical protein mll1771 [Mesorhizobium loti MAFF303099]
gi|14022458|dbj|BAB49067.1| mll1771 [Mesorhizobium loti MAFF303099]
Length = 254
Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K++E+GR+KWQ T+H VWFDEEPP D+Y EGLTR NAT G+ +T TPL G S ++
Sbjct: 182 FKSFEKGREKWQGETLHGVWFDEEPPLDIYSEGLTRTNATSGITIVTFTPLLGMSDVVLL 241
Query: 61 Y 61
+
Sbjct: 242 F 242
>gi|134288591|ref|YP_001110830.1| hypothetical protein SPSV3_gp30 [Salmonella phage SETP3]
gi|125631956|gb|ABN47359.1| hypothetical protein [Salmonella phage SETP3]
gi|126015316|gb|ABN70689.1| terminase [Salmonella phage SETP5]
gi|126015318|gb|ABN70690.1| terminase [Salmonella phage SETP12]
Length = 423
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/251 (14%), Positives = 73/251 (29%), Gaps = 29/251 (11%)
Query: 21 FDEEPPED------VYFEGL----------TRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
DE + + + + I T +G + + ++
Sbjct: 122 IDELDTLNKDHAEHAWNKVIARNRQLPRTYRPITPKPANTVSVFTTPEGFRFVHDRWVVK 181
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGRIFPIVEEDIV 123
+ ++I+ P E + + D+YP +A GE + L S ++ ++
Sbjct: 182 KNPGYEMIQAPTTSNPFLPEDYVQSLRDTYPGRLIDAYIDGEFVNLTSDSVYYAYDQRKN 241
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI---FHVAA 180
+ I G DF H + V+ + V + V TP
Sbjct: 242 SSRETIQPGETLYIGQDFNVGHMAS---TVYVQRGYVWHAVAELVDMLDTPEVVREITER 298
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSG-EQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K G + G AQ G ++ + V+ ++ +
Sbjct: 299 WKRHGHHIVMYPDATGKNRKSTDASTSDIAQLHNAGFEIRAKSVNP-----AVKDRVASV 353
Query: 240 LDRMRSGRWKV 250
+ SGR V
Sbjct: 354 NKALESGRLMV 364
>gi|299534276|ref|ZP_07047625.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
S44]
gi|298717734|gb|EFI58742.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
S44]
Length = 436
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 67/252 (26%), Gaps = 20/252 (7%)
Query: 7 GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ W++E + + A + P P+ +A
Sbjct: 118 SVKSLEGFKR--AWWEEAQTATQRSLDLLRPTMRAPGSQLWFGWNPRFAMDPVDRMLRAA 175
Query: 65 SSS-DRQVIRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIV--- 118
V++ + P + + + +D + + +G + +
Sbjct: 176 ELPTGALVVQANWRDNPWFPAELEQERLDCLRQQPDKYDHIWEGGYETVNEGAYFAKQLT 235
Query: 119 --EEDIVINSLDIPEHWVQIGGMDFGWH--HPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + +D G + + + + V+ Y + Q
Sbjct: 236 AAKAEGRLGVVAADPSMRLRAYVDIGGTGRNADSFAMWIVQFVGLQVRVLDYYEAQGQPM 295
Query: 175 IFHVAALKSWGKW---LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
HV L G L PHDG + D +++ RR G + + G
Sbjct: 296 ATHVQWLHDRGYKSDRLDIWLPHDGDRSDVVFAVTPASELRRLGYTVT---TIPNQGKGA 352
Query: 232 VEAGISDMLDRM 243
+
Sbjct: 353 ALKRVEAARQLF 364
>gi|319786769|ref|YP_004146244.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas
suwonensis 11-1]
gi|317465281|gb|ADV27013.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas
suwonensis 11-1]
Length = 439
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 65/256 (25%), Gaps = 24/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINAT--------QGLVTLTLTPLKGRSPII 58
+ H W +E GL R + P + P+
Sbjct: 117 SIKSLEG--FHRAWVEEAQSLSSTSLGLLRPTIRWEDAGRGLTSEMWFGWNPRRKTDPVD 174
Query: 59 EHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIF 115
V+R ++ P + + +D + E +G + +
Sbjct: 175 VLLRGPEPPTGAAVVRANWSDNPWFPSVLEQERLDCLRSMPDQYEHIWEGGYATAATGAY 234
Query: 116 P-------IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
E I + D + A + + V+ Y
Sbjct: 235 FAQALVTAKSEGRIGRVAADPLMTTRAYWDIGGTGAKADACAIWIVQFVGREVRVLDYYE 294
Query: 169 CREQTPIFHVAALKSWGKWL-PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ Q HVA L+S G PHDG +DK + ++ G +
Sbjct: 295 AQGQPLATHVAWLRSRGYERAQCVLPHDGAANDKVHQVSYQSALQQAGFDVRVIPNM--- 351
Query: 228 GSNGVEAGISDMLDRM 243
G+ I +
Sbjct: 352 GAGAASKRIEAVRRLF 367
>gi|62362215|ref|YP_224140.1| gp2 [Enterobacteria phage ES18]
gi|58339058|gb|AAW70473.1| gp2 [Enterobacteria phage ES18]
Length = 439
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/245 (12%), Positives = 70/245 (28%), Gaps = 27/245 (11%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + ++ M
Sbjct: 127 VAWVDEAESVSSTAWKKLRPTVREEGSEIWVTWNPEKDGSATDKLFRKNPPKSSMIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E+ER+ + + + +G + S + + + ++
Sbjct: 187 YVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFEDNLWRK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV-----------AA 180
+ + G DFG+ + ++ D++ +Y+
Sbjct: 247 SERLLFGADFGFAKDPSTLIRMFILDNN-LYIEYEAYGNGVELDDMWKFYAGKTDATPKQ 305
Query: 181 LKSW----GKWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
LK W P S + + + QG + VE G
Sbjct: 306 LKDWKVTDDTKFPGIPEARKWPIKADNSRPETISHIKGQGFNISAA----QKWQGSVEDG 361
Query: 236 ISDML 240
I+ +
Sbjct: 362 ITFLR 366
>gi|148557330|ref|YP_001264912.1| bacteriophage terminase large (ATPase) subunit-like protein
[Sphingomonas wittichii RW1]
gi|148502520|gb|ABQ70774.1| Bacteriophage terminase large (ATPase) subunit and inactivated
derivatives-like protein [Sphingomonas wittichii RW1]
Length = 225
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
KAYEQGR KWQ +T++ +WFDEEPP D+Y EGLTR NAT G LT TPLKG S ++
Sbjct: 161 FKAYEQGRAKWQGDTLNGIWFDEEPPLDIYVEGLTRTNATGGFAMLTFTPLKGMSEVVRM 220
Query: 61 Y 61
+
Sbjct: 221 F 221
>gi|253991059|ref|YP_003042415.1| phage terminase large subunit [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782509|emb|CAQ85673.1| similar to phage terminase large subunit [Photorhabdus asymbiotica]
Length = 411
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 17/229 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + + +T P K S + + ++ M
Sbjct: 127 LAWVDEAESVSEIAWKKLRPTVRESGSEIWVTWNPEKDGSATDKRFRKKPPRSSIIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E+ER+ ++S + +G + S + + I D+
Sbjct: 187 YSDNPWFPDVLEEERQEDLESLEHSDYAWIWEGAYLENSEKQVLANKYKIESFPDDLWMK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ + G DFG+ ++ D+ +Y+ + A + W
Sbjct: 247 ADRLLFGADFGFAKDPNTLLRMFILDN-CLYIDREACRVGVELDHIPAFYDKVPESRKW- 304
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ D E +S +RQG + VE GI+ +
Sbjct: 305 ----PIKADSARPETIS-YLKRQGFNISAA----KKWQGSVEDGITFLR 344
>gi|304384818|ref|ZP_07367164.1| PBSX family phage terminase [Pediococcus acidilactici DSM 20284]
gi|304329012|gb|EFL96232.1| PBSX family phage terminase [Pediococcus acidilactici DSM 20284]
Length = 432
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/264 (14%), Positives = 86/264 (32%), Gaps = 24/264 (9%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTL-TLTPLKGRSPIIEHYLS 63
+ + ++ V + E ++ E R A + L L P PIIE +
Sbjct: 119 SANSIRGLSLGSVAYSEMNLLDKEFIDESFRRTAAAKIRYHLADLNPPAPHDPIIETFKE 178
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILGSGRIFPIVEED 121
+ T+++ P +EQ K + + + + G ++ G I+ + ++
Sbjct: 179 Y---GAHWLHWTMSDNPVMSEQRLKEMEEQLKRNPYRYKRDWLGLRVMPQGVIYSMFDDK 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFA----AGHLVWNRDSDVIYVVKN--YRCREQTP- 174
+ + + E D G + V + D + + Y
Sbjct: 236 DMTDQALVGEPVEMFFAGDAGQNDATTLSCNIVTRVVDGDGARFVLNRVANYYHSGTETG 295
Query: 175 -----IFHVAALKSWGKWLPWAWP-HDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+ L+ + W + + + + L A+ + G+ P ++
Sbjct: 296 ETKAMSTYAEELRQFINWCHQKYQLYYSDIVIDPAAKTLRAELEKLGIMSSPANNNGNEK 355
Query: 229 SNGV---EAGISDMLDRMRSGRWK 249
V E GI + + M + +++
Sbjct: 356 VGSVRGIEVGIERLQNLMTNQQFR 379
>gi|300021692|ref|YP_003754303.1| hypothetical protein Hden_0155 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523513|gb|ADJ21982.1| protein of unknown function DUF264 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 500
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/310 (13%), Positives = 78/310 (25%), Gaps = 69/310 (22%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE--DVYFEGLTRIN-----------ATQGLVTLTLTPL 51
E+ K+Q +H + DE +Y +R+ + P
Sbjct: 113 EKDIYKYQGAEIHVLLIDELTHFTESMYRFLRSRVRMVGLKLQEAWKRRFPRILAGANPG 172
Query: 52 KGRSPIIEHYLSASSS--------------DRQVIRMTINETPHY---NEQERKRIIDSY 94
++ + RQ IR + + P + +++
Sbjct: 173 NVGHLWVKSTFVDGAESYAVRDMEPEDGGMKRQFIRAVLEDNPSMTTDDPGYEQKLSGLG 232
Query: 95 PLHEREARTKGEPILGSGRIFPIV-EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153
+A G+ + G F E VI +PE W ++ D+G PF+ G
Sbjct: 233 SKSLVQAMRFGDWDVIEGAFFDCWATERHVIRPFAVPELWTKLMSGDWGSAKPFSFGWWT 292
Query: 154 WNRD---------------SDVIYVVKNYRCRE---------QTPIFHVAALKSWG---K 186
D + + + + T L +
Sbjct: 293 VVSDDFEAETALGRKIVLPRGCLVRYREWYGMQTGKPNTGLKLTAEQVALGLVDREPTTE 352
Query: 187 WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA------GISDML 240
+ + G ++ + R + F N G +
Sbjct: 353 KIDYRVLDPAAFTADG-GPSIADRMRDA-ARTKTRSLVFRRADNARVPARGAMGGWDQVR 410
Query: 241 DRM---RSGR 247
RM GR
Sbjct: 411 QRMIGDEEGR 420
>gi|317473130|ref|ZP_07932428.1| phage terminase [Anaerostipes sp. 3_2_56FAA]
gi|316899354|gb|EFV21370.1| phage terminase [Anaerostipes sp. 3_2_56FAA]
Length = 499
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 23/241 (9%)
Query: 15 TVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +W +E + + R + + P K + Y+
Sbjct: 215 YIGILWLEELDQFTGPESVRKIEQSVIR-GGEYAYIFKSFNPPKSKGNWANKYIKIPKET 273
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
R V T + P + ++ + GE G+G I
Sbjct: 274 RLVTHSTYMDIPKKWLGKPFLDEAEFLKEVNPAAYDNEYMGE-ANGNGGQVFDNVTIREI 332
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+I + G+D+GW+ P+ G + ++ +Y+ YRC ++ LK
Sbjct: 333 TDEEIAQFDRIYNGVDWGWYPDPYHFGRMHYDAARMTLYIFMEYRCNKKGNKETAEELKK 392
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
G +D + D + + YR G+ + G V+ + +
Sbjct: 393 RG-----ITGNDLITCDSAEEKSVGD-YRAYGLLARGA----EKGPGSVDYSMKWLQSLR 442
Query: 244 R 244
Sbjct: 443 E 443
>gi|170752064|ref|YP_001758324.1| PBSX family phage terminase large subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170658586|gb|ACB27641.1| phage terminase, large subunit, PBSX family [Methylobacterium
radiotolerans JCM 2831]
Length = 440
Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/245 (11%), Positives = 62/245 (25%), Gaps = 27/245 (11%)
Query: 16 VHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
V W +E + + + I + ++ + +++ + +V++
Sbjct: 112 VDVCWVEEARTVSKTSWDVLIPTIRKEGSEIWISFNTELAEDETYKRFVAKPPTGARVVK 171
Query: 74 MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI-------VINS 126
+ + P + + R+ +D T + I +I
Sbjct: 172 IGWEDNPWFPDVLRQEALDLKARDPIAYETVWGGNCKAVLDGAIYANEILAATTAKRFTK 231
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW-- 184
+ D G + ++ Y R ++ +LK
Sbjct: 232 VPYDPTKPVHTFWDLGRADKTSIWFAQI--VGFEFRLIDFYENRGHALGHYLESLKERAL 289
Query: 185 -------GKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGI 236
G W PHD S + Q G ++ V AGI
Sbjct: 290 PVEQGGKGYVYGEHWLPHDARNELLASERTIEQQMWAAGHRVRITPRLT------VAAGI 343
Query: 237 SDMLD 241
Sbjct: 344 DAARK 348
>gi|260463788|ref|ZP_05811985.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259030385|gb|EEW31664.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 209
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K++E+GR+KWQ T+H VWFDEEPP D+Y EGLTR NAT G+ +T TPL G S ++
Sbjct: 137 FKSFEKGREKWQGETLHGVWFDEEPPLDIYSEGLTRTNATGGITIVTFTPLLGMSDVVLL 196
Query: 61 Y 61
+
Sbjct: 197 F 197
>gi|253990592|ref|YP_003041948.1| Phage terminase, large subunit [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782042|emb|CAQ85206.1| Phage terminase, large subunit [Photorhabdus asymbiotica]
Length = 405
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 17/229 (7%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + + +T P K S + + ++ M
Sbjct: 121 LAWVDEAESVSEIAWKKLRPTVRESGSEIWVTWNPEKDGSATDKRFRKKPPRSSIIVEMN 180
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E+ER+ ++S + +G + S + + I D+
Sbjct: 181 YSDNPWFPDVLEEERQEDLESLEHSDYAWIWEGAYLENSEKQVLANKYKIESFPDDLWMK 240
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+ + G DFG+ ++ D+ +Y+ + A + W
Sbjct: 241 ADRLLFGADFGFAKDPNTLLRMFILDN-CLYIDREACRVGVELDHIPAFYDKVPESRKW- 298
Query: 192 WPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ D E +S +RQG + VE GI+ +
Sbjct: 299 ----PIKADSARPETIS-YLKRQGFNISAA----KKWQGSVEDGITFLR 338
>gi|169633422|ref|YP_001707158.1| putative phage terminase [Acinetobacter baumannii SDF]
gi|169152214|emb|CAP01118.1| conserved hypothetical protein; Putative phage terminase
[Acinetobacter baumannii]
Length = 432
Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 90/265 (33%), Gaps = 28/265 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + + DE + + + + R+ Q + T +
Sbjct: 111 RSMEK-PNTIVGFKIGHALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 169
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A KG
Sbjct: 170 GFKFTHEQFVKEANQSDAKRALYGMIQASTYDNEANLPDDYIASLFESYPPQLISAYLKG 229
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ + +
Sbjct: 230 QFVNLTSGAVYPDFDRTLNHTDEEIRPNEALLIGMDFNVLKMAAVVYVIRD---GKPRAL 286
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP ++ + P Q S E A +++G+++
Sbjct: 287 DELVGVRDTPTMADLLIEKFPNHEMTIIPDAAGQATSSKKSSESDHAILKQKGLRVEVNS 346
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGR 247
++ I+ + + +G+
Sbjct: 347 TNP-----NIKDRINAVNALILNGK 366
>gi|292496028|gb|ADE29129.1| terminase [uncultured virus]
Length = 509
Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/268 (16%), Positives = 88/268 (32%), Gaps = 32/268 (11%)
Query: 8 RDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRINATQGLV--TLTLTPLKGRSPII-- 58
+++ ++ VW DE D+ +R+ G TLT +
Sbjct: 176 WNRYAGDSYGGVWADEVGHYGDDLHDLLEMLGSRLRGVGGPQTQLWTLTGNGKNAAFDII 235
Query: 59 ----EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHERE-ARTKGEPILGSGR 113
+ + + ++ + E P+ ++ E++R Y RE G G G
Sbjct: 236 ERGLDANGDKIGLNIETVKASTLENPYLSDSEKERFKRQYGNTSREGQALHGGFSAGEGN 295
Query: 114 IFPIVEED-IVINSLDIPEHWVQIGGMDFGW-----------HHPFAAGHLVWNRDSDVI 161
+ + I ++ D E+ V G+D + AA + ++R +
Sbjct: 296 LLNRDQLSFIDKSNYDGGENLVFYIGVDLAYVESKGKAKANDSDYTAAVLVGYDRSNGKA 355
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
YV+ R R T + L + +P D + + + +R +
Sbjct: 356 YVLDVERERGMTLQQSITWLSQFAXRVP---QPTVKIEDVAAQKWFIQEAKR---TVEGT 409
Query: 222 CATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ G+ + I+DM G K
Sbjct: 410 IQSVSPGNQSKQERITDMSVLFERGDVK 437
>gi|226313130|ref|YP_002773024.1| hypothetical protein BBR47_35430 [Brevibacillus brevis NBRC 100599]
gi|226096078|dbj|BAH44520.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 469
Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/282 (12%), Positives = 70/282 (24%), Gaps = 42/282 (14%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEE--PPEDVYF-EGLTRINATQGLVTLTLTPLKGRSPI 57
K+ + + VW DE E + + G T TP G +
Sbjct: 129 FKSAD-NPKTLVGKGLDGVWLDEASKMKEQTWSGYLSYALADKGGWSVWTTTPE-GMNWF 186
Query: 58 IEHY--------------LSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHEREAR 102
+ + T + P ++ +R+I++ P +
Sbjct: 187 YHDIVLNGQHTQAGGQLDEYRNDPEWCNFYWTSKDNPLPELQKNIQRMIETMPKRYVDRE 246
Query: 103 TKGEPILGSGRIFPIVEEDIVINS-------LDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+ G+++ + I + G D+G+ +P
Sbjct: 247 IFARFDVFFGQVYEEFDRSIHVVPRALCEQKFKDGHFVHIEAGKDWGFTNPGVTLVGAMT 306
Query: 156 RDSDVIYVVKNYRCREQTP--IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213
+ +++V + + K L W D Y
Sbjct: 307 A-NGELWIVDAIYKAQMEILVPGSSDCWVAQDKELMKKWKIKLFWCDS-ENASNIKTYLT 364
Query: 214 QGMKMLPECATFDDGSNGVEAGISDMLDRMR----SGRWKVF 251
G+ GI + + +GR +F
Sbjct: 365 NGLPARAAQKHLK-------EGIRAVSILFKVKSDNGRPNIF 399
>gi|239502405|ref|ZP_04661715.1| putative phage terminase [Acinetobacter baumannii AB900]
Length = 427
Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 90/264 (34%), Gaps = 28/264 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + + DE + + + + R+ Q + T +
Sbjct: 106 RSMEK-PNTIVGFKIGHALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 164
Query: 53 GRSPIIEHYLSASS------SDRQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ + +I+ + + + + + +SYP A KG
Sbjct: 165 GFKFTHEQFVKEANLSDAKRALYGMIQASTYDNEVNLPDDYIASLFESYPPQLISAYLKG 224
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ + +
Sbjct: 225 QFVNLTSGAVYPDFDRTLNHTDEEIRPNEALLIGMDFNVLKMAAVVYVIRD---GKPRAL 281
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP ++ + P Q S E A R++G+++
Sbjct: 282 DELVGVRDTPTMADLLIEKFPNHEMTIIPDAAGQATSSKKSSESDHAILRQKGLRVEVNS 341
Query: 223 ATFDDGSNGVEAGISDMLDRMRSG 246
++ I+ + + +G
Sbjct: 342 TNP-----NIKDRINAVNALILNG 360
>gi|200389400|ref|ZP_03216011.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|199601845|gb|EDZ00391.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
Length = 439
Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 27/245 (11%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + ++ M
Sbjct: 127 VAWVDEAESVSSTAWKKLRPTVREEGSEIWVTWNPEKDGSATDKLFRKNPPKSSIIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E+ER+ + + + +G + S + + + ++
Sbjct: 187 YVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFEDNLWRK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV-----------AA 180
+ + G DFG+ + ++ D++ +Y+
Sbjct: 247 SERLLFGADFGFAKDPSTLIRMFILDNN-LYIEYEAYGNGVELDDMWKFYAGKTDATPKQ 305
Query: 181 LKSW----GKWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W P S + + + QG + VE G
Sbjct: 306 LEDWKATDDTKFPGIPEARKWPIKADNSRPETISHIKGQGFNISAA----QKWQGSVEDG 361
Query: 236 ISDML 240
I+ +
Sbjct: 362 ITFLR 366
>gi|322617167|gb|EFY14073.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322617525|gb|EFY14424.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624846|gb|EFY21675.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322630396|gb|EFY27166.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634576|gb|EFY31309.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322639287|gb|EFY35979.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322641951|gb|EFY38570.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322646142|gb|EFY42657.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322651994|gb|EFY48357.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322656167|gb|EFY52464.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322659319|gb|EFY55566.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322665779|gb|EFY61962.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669983|gb|EFY66124.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673970|gb|EFY70067.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678727|gb|EFY74783.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683477|gb|EFY79491.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687552|gb|EFY83522.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323193612|gb|EFZ78817.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323198519|gb|EFZ83621.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203541|gb|EFZ88564.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323208431|gb|EFZ93370.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323213567|gb|EFZ98357.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323218397|gb|EGA03107.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323219724|gb|EGA04205.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323224576|gb|EGA08856.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323232391|gb|EGA16494.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235576|gb|EGA19660.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323241265|gb|EGA25301.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323245007|gb|EGA29009.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323250125|gb|EGA34019.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253910|gb|EGA37735.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323258780|gb|EGA42436.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262838|gb|EGA46389.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264213|gb|EGA47720.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323270910|gb|EGA54348.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 439
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 27/245 (11%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + ++ M
Sbjct: 127 VAWVDEAESVSSTAWKKLRPTVREEGSEIWVTWNPEKDGSATDKLFRKNPPKSSIIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E+ER+ + + + +G + S + + + ++
Sbjct: 187 YVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYIVQSFEDNLWRK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV-----------AA 180
+ + G DFG+ + ++ D++ +Y+
Sbjct: 247 SERLLFGADFGFAKDPSTLIRMFILDNN-LYIEYEAYGNGVELDDMWKFYAGKTDATPKQ 305
Query: 181 LKSWG----KWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W P S + + + QG + VE G
Sbjct: 306 LEDWEVTDDAKFPGIPEARKWPIKADNSRPETISHIKGQGFNISAA----QKWQGSVEDG 361
Query: 236 ISDML 240
I+ +
Sbjct: 362 ITFLR 366
>gi|238912006|ref|ZP_04655843.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
Length = 439
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 27/245 (11%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + ++ M
Sbjct: 127 VAWVDEAESVSSTAWKKLRPTVREEGSEIWVTWNPEKDGSATDKLFRKNPPKSSIIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E+ER+ + + + +G + S + + + ++
Sbjct: 187 YVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYIVQSFEDNLWRK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV-----------AA 180
+ + G DFG+ + ++ D++ +Y+
Sbjct: 247 SERLLFGADFGFAKDPSTLIRMFILDNN-LYIEYEAYGNGVELDDMWKFYAGKTDATPKQ 305
Query: 181 LKSWG----KWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W P S + + + QG + VE G
Sbjct: 306 LEDWEVTDDAKFPGIPEARKWPIKADNSRPETISHIKGQGFNISAA----QKWQGSVEDG 361
Query: 236 ISDML 240
I+ +
Sbjct: 362 ITFLR 366
>gi|296101689|ref|YP_003611835.1| hypothetical protein ECL_01325 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|296103539|ref|YP_003613685.1| hypothetical protein ECL_03201 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295056148|gb|ADF60886.1| hypothetical protein ECL_01325 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295057998|gb|ADF62736.1| hypothetical protein ECL_03201 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 365
Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 19/230 (8%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P + S + + + D + M
Sbjct: 77 LCWVDEAESVSEIAWQKLSPTVREEGSEIWVTWNPERDGSATDKRFRKEAGDDCITVEMN 136
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E ER+ +G + S + + I S + +
Sbjct: 137 YTDNPWFPDVLEGERQNDQRRLDPATYAWVWEGAYLENSDKQVLAGKYRIAEFSDQLWKE 196
Query: 133 WVQ-IGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
+ G DFG+ P + +Y+ ++ +
Sbjct: 197 ADRLFFGADFGFAKDPNTLVRSFI--LHNRLYIEYEAYGQQTELDHMPEL------YDTI 248
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
D + + + +RQG + + VE GI+ +
Sbjct: 249 PGSRDWPIKADSARPETISYLKRQGFNISAA----EKWQGSVEDGIAHLR 294
>gi|325953894|ref|YP_004237554.1| phage terminase, large subunit, PBSX family [Weeksella virosa DSM
16922]
gi|323436512|gb|ADX66976.1| phage terminase, large subunit, PBSX family [Weeksella virosa DSM
16922]
Length = 446
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/228 (11%), Positives = 62/228 (27%), Gaps = 22/228 (9%)
Query: 7 GRDKWQSNT-VHYVWFDEEP--PEDVYFEGLTRIN---ATQGLVTLTLTPLKGRSPIIEH 60
+K +S + +W +E E+ + + RI + + LT P+ R I
Sbjct: 110 DSEKIKSVAGITKIWLEEATEFTEEDFDQLDLRIRGHVDSFYQIILTFNPIHERHWIKRK 169
Query: 61 YLSASSSDRQVIR-------MTINETPHYNEQERKRIIDSYPL--HEREARTKGEPILGS 111
+ + T + +EQ ++++ + KGE +
Sbjct: 170 FWDTPEEGGEYDPEMMFNLVTTYRDNKFLDEQYKQKLEKLINSNINLYRVYVKGEWGIEQ 229
Query: 112 GRIF---PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVI---YVVK 165
E V S+ + DF + D +V+K
Sbjct: 230 NDNMWLYAFSNEKHVKPSIPFLPTYDVYLSFDFNKDPLTCLAFQMSPNKGDHHSFIHVIK 289
Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG-EQLSAQYR 212
+ ++ + + + + G + +
Sbjct: 290 EFGGKKSLEDLCTEIKMYFPGSILYVTGDSSGNTEGVVGYQSIHDSAY 337
>gi|225574768|ref|ZP_03783378.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
10507]
gi|225037968|gb|EEG48214.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
10507]
Length = 428
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 20/247 (8%)
Query: 5 EQGRDKWQSNTV-----HYVWFDEEP--PEDVYFEGLTRIN-----ATQGLVTLTLTPLK 52
E+ R+K +S T VW +E + + R+ + +T P+
Sbjct: 112 EKQREKLKSITFQRGKLTDVWIEEATEITQADFEIIDDRLRGELPPDQFYQIRMTFNPVN 171
Query: 53 GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
I + + S+ T + + R+ + + G G
Sbjct: 172 KNHWIKKVFFDTPDSNVLTHHSTYLDNRFIDAAYHARMARRKEVDPEGYQIYGLGNWGEV 231
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
+ + S ++ ++ G DFG++H A L +D ++ + + Y ++
Sbjct: 232 GGLILHNWAVENISQNLDDYDDIAIGQDFGFNHANAILLLGM-KDDNIYILQEIYVFEKE 290
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
T A+K + D +++ A ++ G +
Sbjct: 291 TAEIIPLAIKD------GIPIKRTMWCDSAEPDRIKA-WKTAGFRARAVSKEHTTEKKYQ 343
Query: 233 EAGISDM 239
A I +
Sbjct: 344 SAQIDWL 350
>gi|168236450|ref|ZP_02661508.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194735659|ref|YP_002113600.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|194711161|gb|ACF90382.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197290245|gb|EDY29601.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 439
Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 27/245 (11%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + ++ M
Sbjct: 127 VAWVDEAESVSSTAWKKLRPTVREEGSEIWVTWNPEKDGSATDKLFRKNPPKSSIIVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E+ER+ + + + +G + S + + + ++
Sbjct: 187 YVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFEDNLWRK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV-----------AA 180
+ + G DFG+ + ++ D++ +Y+
Sbjct: 247 SERLLFGADFGFAKDPSTLIRMFILDNN-LYIEYEAYGNGVELDDMWKFYAGKTDATPKQ 305
Query: 181 LKSWG----KWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W P S + + + QG + VE G
Sbjct: 306 LEDWEVTDDAKFPGIPEARKWPIKADNSRPETISHIKGQGFNISAA----QKWQGSVEDG 361
Query: 236 ISDML 240
I+ +
Sbjct: 362 ITFLR 366
>gi|162135133|ref|YP_001595874.1| hypothetical protein [Pseudomonas phage YuA]
gi|161513980|emb|CAO77806.1| hypothetical protein [Pseudomonas phage YuA]
Length = 515
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/293 (11%), Positives = 77/293 (26%), Gaps = 62/293 (21%)
Query: 10 KWQSNTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLK---GRSPIIEHY 61
+ + ++ ++E R T G + + +
Sbjct: 157 NYHGHAYPWIGWEELCNWADDKCYTVMMSCCRSTKPGMPRCYRATTNPYGPGHNWVKARF 216
Query: 62 LSAS---------------SSDRQVIRMTINETP---HYNEQERKRIIDS-YPLHEREAR 102
R I +I E H + + +I + E A
Sbjct: 217 RLPHMRGRVILDAMRDGEREPPRVAIHGSIYENQILLHADPEYISKIRAAARNPSELAAW 276
Query: 103 TKGEPILGSGRIFPIVEEDIVINSLD-----IPEHWVQIGGMDFGWHHPFAAGHLV---- 153
G + +G +F + V IP+ W D+G PFA
Sbjct: 277 LHGSWDIIAGGMFDDIYRGDVHVVPSVPLSVIPKRWKIDRSFDWGSSKPFAVLWWAESNG 336
Query: 154 ---------WNRDSDVIYVVKNYRC----REQTPIFHVAALKSWGKWLPWAWPHDGLQH- 199
+ + +Y+++ + R + + + K W +G
Sbjct: 337 EPFEWNGRVYGKVRGDLYLIQEWYGWNGTRNEGVRMLASEVAQGVKDREEDWALEGRVKP 396
Query: 200 --------DKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
D +G ++ ++G++ P G + G + ++
Sbjct: 397 GPADSSIFDVENGNSIAVDMEKKGVRWTPAD----KGPGSRKQGWEQIRKLLK 445
>gi|85059645|ref|YP_455347.1| hypothetical protein SG1667 [Sodalis glossinidius str. 'morsitans']
gi|84780165|dbj|BAE74942.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
Length = 413
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 21/231 (9%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + V +T P S + + S + M
Sbjct: 126 LCWVDEAETVSEIAWQKLDPTVREPGSEVWVTWNPETEGSATDKRFRKDSDDAIIAVEMN 185
Query: 76 INETPHY---NEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + EQ R+R + +G + + + + D+ +
Sbjct: 186 YMDNPWFHSVLEQVRQRDLRMLDSATYAWIWEGAYLENANKQVMSGKYVFETFPDDLWKQ 245
Query: 133 WVQ-IGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
+ G DFG+ P + + +Y+ L ++
Sbjct: 246 ADRLFFGADFGFAQDPNTLIRMFI--LDNRLYIEYEAYGVGV-------ELDEMPQFYDA 296
Query: 191 AWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
S + + RQG + VE GI+ +
Sbjct: 297 IPEVRRWPIKGDSSRPETISWLSRQGFNIDAA----VKWQGSVEDGITYLR 343
>gi|149408241|ref|YP_001294520.1| hypothetical protein ORF012 [Pseudomonas phage M6]
Length = 515
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/293 (11%), Positives = 77/293 (26%), Gaps = 62/293 (21%)
Query: 10 KWQSNTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLK---GRSPIIEHY 61
+ + ++ ++E R T G + + +
Sbjct: 157 NYHGHAYPWIGWEELCNWADDKCYTVMMSCCRSTKPGMPRCYRATTNPYGPGHNWVKARF 216
Query: 62 LSAS---------------SSDRQVIRMTINETP---HYNEQERKRIIDS-YPLHEREAR 102
R I +I E H + + +I + E A
Sbjct: 217 RLPHMRGRVILDAMRDGEREPPRVAIHGSIYENQILLHADPEYISKIRAAARNPSELAAW 276
Query: 103 TKGEPILGSGRIFPIVEEDIVINSLD-----IPEHWVQIGGMDFGWHHPFAAGHLV---- 153
G + +G +F + V IP+ W D+G PFA
Sbjct: 277 LHGSWDIIAGGMFDDIYRGDVHVVPSVPLSVIPKRWKIDRSFDWGSSKPFAVLWWAESNG 336
Query: 154 ---------WNRDSDVIYVVKNYRC----REQTPIFHVAALKSWGKWLPWAWPHDGLQH- 199
+ + +Y+++ + R + + + K W +G
Sbjct: 337 EPFEWNGRVYGKVRGDLYLIQEWYGWNGTRNEGVRMLASEVAQGVKDREEDWALEGRVKP 396
Query: 200 --------DKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
D +G ++ ++G++ P G + G + ++
Sbjct: 397 GPADSSIFDVENGNSIAVDMEKKGVRWTPAD----KGPGSRKQGWEQIRKLLK 445
>gi|317485514|ref|ZP_07944391.1| phage terminase [Bilophila wadsworthia 3_1_6]
gi|316923194|gb|EFV44403.1| phage terminase [Bilophila wadsworthia 3_1_6]
Length = 434
Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 62/251 (24%), Gaps = 23/251 (9%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
D + + + F E + + G T + +A
Sbjct: 121 DTLVGSPPYGIVFSEYSLTNPLSWAYLKPILEENGGWAIFNFTSRGRNHAATLYEYAAGE 180
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSY--------PLHEREARTKGEPILGSGRIFP-- 116
R+ + ET + ++ + I + +
Sbjct: 181 ESWFAQRLPVTETSVFTPEQVEEIRKEMHRTYGEEDGEALFRQEYMCDLDAPVVGAYYGK 240
Query: 117 ---IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
++ I + D G A V I+++ Y Q
Sbjct: 241 LLARAADEGRITGVPYDPAAPVFTAWDLGMDDSTAI--WVAQCVGREIHLIDYYEANGQP 298
Query: 174 PIFHVAALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ ++ G P + PHD + +G+ G+ + P V
Sbjct: 299 LAHYADWVRGRGYGRPTHYLPHDARARELGTGKSREEVL--AGLDIGPVLVVPQQ---SV 353
Query: 233 EAGISDMLDRM 243
GI+ + +
Sbjct: 354 ADGINAVRTIL 364
>gi|260596962|ref|YP_003209533.1| hypothetical protein CTU_11700 [Cronobacter turicensis z3032]
gi|260216139|emb|CBA28942.1| hypothetical protein CTU_11700 [Cronobacter turicensis z3032]
Length = 409
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 19/230 (8%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P + S Y D + M
Sbjct: 127 LCWVDEAETVSEVAWQKLDPTVREDDSEIWVTWNPERDGSATDRRYRKEPGDDCITVEMN 186
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E R++ +G + S + + + S ++ +
Sbjct: 187 YIDNPWFPRVLEGVRRKDQKRLDPATYAWVWEGAYLENSNKQVLAGKYRVAEFSDELWKE 246
Query: 133 WVQ-IGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
+ G DFG+ P + +Y+ ++ A
Sbjct: 247 AERLFFGADFGFAKDPNTLVRSFI--LHNRLYIEYEAYGQQTELDHMPAL-----YDTVP 299
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
++ D E +S +RQG + VE GI+ +
Sbjct: 300 GAREWPIKADSARPETIS-YLKRQGFNISAAD----KWQGSVEDGIAHLR 344
>gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli
IHE3034]
Length = 471
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302]
gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302]
Length = 470
Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/210 (12%), Positives = 61/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-FKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGSDHYLWDGDGVGAGLRRQ 307
>gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088]
gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088]
gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180]
Length = 471
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
117-3]
Length = 471
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ + + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKCIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89]
gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88]
gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89]
gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3]
gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88]
gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146]
gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252]
Length = 471
Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
110-3]
Length = 471
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|218296139|ref|ZP_03496908.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
gi|218243516|gb|EED10045.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
Length = 426
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/250 (13%), Positives = 71/250 (28%), Gaps = 20/250 (8%)
Query: 12 QSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL-SASS 66
+ DE V+ E + + + KGR+ E + +
Sbjct: 113 RGRAYDLAIIDEAAFAPSLARVWEEAILPTLLDRLGSAWIASTPKGRNAFYELWNLTLDD 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED---IV 123
+ P +++E R+ + E + GR+F + ++
Sbjct: 173 PAWAHFHEPSHRNPFLSQEELARMAATMTRERYRQEILAEWVDAEGRVFSEDALEAALLL 232
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT-PIFHVAALK 182
D G+D + A ++ + V+ +R T VAAL
Sbjct: 233 QGPEDPRPGERYAAGVDLARSQDYTAVAVLRLGAQLELVRVERWRGLSYTLTARKVAALL 292
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT--FDDG--SNGVEAGISD 238
+ + G+ R + ++ P T DDG + E +
Sbjct: 293 AR-------YEAYAHVDATGVGDAAWEGIRAEWPRVRPIRITGGRDDGRETRSKENLVGR 345
Query: 239 MLDRMRSGRW 248
+ + +
Sbjct: 346 LQSALETQEL 355
>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 447
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 12/227 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIECAVDAHLKL 235
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H D +V +T V
Sbjct: 236 GFTAKGMKKVGFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKAD 295
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G + + G
Sbjct: 296 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKK 342
>gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
Length = 470
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 19/213 (8%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S E
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKRE----- 219
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD---VIYVVKNYRCREQTPIFHVAAL 181
GW A D+ Y ++ ++ + +
Sbjct: 220 -----WLEAATDAHTKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDI 274
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 275 NEGADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
Length = 470
Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ V W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--VDVCWVEEAEAVTKESWDILIPTIRKPNSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + PH+ + R + + + GEP+ S I E +
Sbjct: 165 DDICLLTANYTDNPHFPDVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P G VVK + +
Sbjct: 224 ATDAHKKLGWKAKGAIIATHDPSDVGGDAKGYAMRHGSVVKRIS------EGLLMDVNDG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ L A RRQ
Sbjct: 278 ADWATEKAIQDGADHFLWDGDGLGAALRRQ 307
>gi|207270776|ref|YP_002261418.1| gp2 [Listeria phage P40]
gi|204307991|gb|ACI00362.1| gp2 [Listeria phage P40]
Length = 430
Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/243 (13%), Positives = 63/243 (25%), Gaps = 25/243 (10%)
Query: 18 YVWFDEEPPEDVYFEGLTRIN--------ATQGLVTLTLTPL-KGRSPIIEHYLSASS-S 67
Y+ ++E E T + LV P + +H +S
Sbjct: 140 YLIYEEAEQFSNADEMETITVSWLRGDYGDIKPLVFYCYNPPKFRGHWLNKHVVSLRHSP 199
Query: 68 DRQVIRMTINET-----PHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ V T E +R + L+ R +
Sbjct: 200 NDLVHHSTFVAVANSHPEWLGEAFLRRALALKKLNPNRYRHVFLGEDVMTGNEVFPNLEY 259
Query: 123 VINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
H G D G+ P + ++R D +Y+VK +
Sbjct: 260 RPIDPSEYHHLTPHEGFDEGYTTDPSVWLQVYYDRKRDTLYIVKEVFLYHAKTKVIAETI 319
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + HD + ++ + G+ G V+ GI + D
Sbjct: 320 RRKQEG-----KHDTEIKGDSANPRVLDELEEYGLY----TYGVKKGKGSVDHGIKWLSD 370
Query: 242 RMR 244
R +
Sbjct: 371 RTK 373
>gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82]
Length = 470
Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429]
gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis
BI429]
Length = 421
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 14/216 (6%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPII 58
++ + V+ V E + VY + +T + T V L TP G +
Sbjct: 119 RSTAHNGKYLRGRKVNLVVLTEAAFIKDSVYEQVITPMKLDTGAPVILESTPN-GMNYFY 177
Query: 59 EHYLS--ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP 116
E Y + T+ + P +++E + P + E + FP
Sbjct: 178 EEYQRGLKNKKHTISFHATVYDNPFLDQEEIENAKAKTPDYVWRQEYLAEFVDDDTVFFP 237
Query: 117 IVEEDIVINSLDI---PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ G+D + + ++ + + + + +R +
Sbjct: 238 WKILVEAFEDYKPEGYKDGRKYSIGVDLAKYRDYTVIIVL-DVTEEPFKIAEFHRFNQIP 296
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA 209
+ + D G+ +S
Sbjct: 297 YEEVIRIVNDLQAKYRAQVYLDA----TGVGDPISE 328
>gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS]
gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS]
gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
Length = 471
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINDG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620]
gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620]
Length = 470
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6]
gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989]
gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6]
gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989]
gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253]
gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
Length = 470
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|66392134|ref|YP_239275.1| putative phage terminase large subunit [Xanthomonas phage Xp15]
gi|62529244|gb|AAX84927.1| putative phage terminase large subunit [Xanthomonas phage Xp15]
Length = 473
Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/315 (10%), Positives = 74/315 (23%), Gaps = 70/315 (22%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQG---------LVTLTLT 49
+E Q + ++ DE + R+ + + T
Sbjct: 109 QFENDIYTHQGAQIGFLIIDEATHFTPPMIRFIRSRVRLGSMIIPPKWKALFPRILYTAN 168
Query: 50 PLKGRSPIIEH----------YLSASSSD---RQVIRMTINETPHY---NEQERKRIIDS 93
P + + + R+ I + + + R R+
Sbjct: 169 PGGVGHHYFKSNFVDIGSGHVFQAPEDEGSMLREYIPAKLEDNKVMMETDPDYRARLKGM 228
Query: 94 YPLHEREARTKGEPIL--GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGH 151
+A +G+ + G + V++ IP W G D+G P A
Sbjct: 229 GDSATVQAMLEGDWEVVSAGGIADLWRSKIHVVHPFKIPHTWKIDRGYDYGSSKPAAYLL 288
Query: 152 LV---------------WNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDG 196
W V + ++Y ++ + A++ + +
Sbjct: 289 FAESDGSEFRDQQGRVCWVPAGTVFVIGEDYIANKRQEGLRLTAIEQGRRMARYEAESGY 348
Query: 197 LQHDKRSG------------EQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR-- 242
+ ++ G+ G+ R
Sbjct: 349 QNRIQPGPADNAIFSAEPGHRTVADDIGIHGVTFTRSNKN----PGSRIEGLQLFRTRLK 404
Query: 243 ------MRSGRWKVF 251
M + + VF
Sbjct: 405 AATERPMENPGFFVF 419
>gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227]
Length = 470
Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520]
Length = 470
Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|158422462|ref|YP_001523754.1| putative DNA packaging protein GP3 [Azorhizobium caulinodans ORS
571]
gi|158329351|dbj|BAF86836.1| putative DNA packaging protein GP3 [Azorhizobium caulinodans ORS
571]
Length = 203
Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K+Y+QGR K+Q H VW DEEPP DVY E L R+ T GL+ T TPL+G + I
Sbjct: 137 FKSYDQGRKKFQGTAKHVVWLDEEPPADVYQEALMRLMTTSGLMLCTFTPLEGMTDIAAQ 196
Query: 61 Y 61
+
Sbjct: 197 F 197
>gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
Length = 471
Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I T + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKTFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1035]
gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1161]
Length = 223
Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 9/155 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
D + + DE D ++ E + ++ +G TP + + Y
Sbjct: 61 NSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKGYCVFIGTPAGMNNNFYDLYQH 120
Query: 64 -ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-----GRIFPI 117
+ D + ++T + +E ++ + + + + I G
Sbjct: 121 ANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKKYLQEFECDWIANIEGAIYGEEIAK 180
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
+E+ I + D G +
Sbjct: 181 IEDKNQIARVPYDPTLPVSTAWDLGVADHSSIIFF 215
>gi|194015756|ref|ZP_03054372.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
7061]
gi|194013160|gb|EDW22726.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
7061]
Length = 438
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 35/227 (15%)
Query: 24 EPPEDVYFEGLTRINAT--QGLVTLTLTPLKGRSPIIEHYLSASSSDR------------ 69
E + + E L R+ + L+ P+ + H+ ++R
Sbjct: 129 EVKYEGFKELLGRLRHPTLDLHMILSTNPVGQDNWTYRHFFKDDQNNRFILDDERLYKER 188
Query: 70 -------QVIRMTINETPHYNEQERKRI--IDSYPLHEREARTKGEPILGSGRIFPIVEE 120
T + K++ + Y KG + R+ P +
Sbjct: 189 TIAINDTYYHHSTAEDNLFLPVSYIKQLDELKEYDPDLYRIARKGHFGINGIRVLPQFKV 248
Query: 121 DIVINSLDIPEHWVQI---GGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
+ + + + GMDFG+ A L + + +Y+ Y R +T
Sbjct: 249 QPHEDVMMAISNINRPLLRAGMDFGFVDSYNAVVRLAVDHEKKYLYIYWEYYDRGKTDDV 308
Query: 177 HVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
V LK + + + ++ +R+ G M+
Sbjct: 309 TVEDLKEFVETKELI-------KADNEQKTIA-YFRKMGYNMVAAHK 347
>gi|326203479|ref|ZP_08193343.1| hypothetical protein Cpap_1523 [Clostridium papyrosolvens DSM 2782]
gi|325986299|gb|EGD47131.1| hypothetical protein Cpap_1523 [Clostridium papyrosolvens DSM 2782]
Length = 429
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 78/274 (28%), Gaps = 54/274 (19%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHY 61
K+QS + DE D Y + R N + ++ P ++
Sbjct: 66 DVSKYQSAEYDIIRIDEGTHMDEARITYMKSRIRGANGYPKQMKISTNPGGIGHKFLKKR 125
Query: 62 LSASSSD---------------------RQVIRMTINETPHYNEQE--RKRIIDSYPLHE 98
+ R I + + E++ + P E
Sbjct: 126 FRIGVENENEIFTDYVGKDKNGVDRYITRCYIPAKVYDNIFLMEKDPNYITNLMQLPERE 185
Query: 99 REARTKGEPILGSGRIFPIVEEDIVINSLD-------IPEHWVQIGGMDFGWHHPFAAGH 151
R+A +G + + FP + DI + IP+HW + D G+ PFA
Sbjct: 186 RDALLEGSWDIFDDQAFPEFDPDIHTYDPEKTFKNGQIPKHWKRWRSADNGYDDPFAFYW 245
Query: 152 LVWNRDSDVIYVVKNYRCREQTPIFHVA-----------------ALKSWGKWLPWAWPH 194
+ + ++ + Y E+ P L K L H
Sbjct: 246 HAID-EHGHVWTYREYTRSEKDPKVAYKDQAAEVVSRSTYLNEETGLLEPEKILYTVIGH 304
Query: 195 DGLQHDKR-SGEQLSAQYRRQGMKMLPECATFDD 227
D ++R + + Y G+ AT
Sbjct: 305 DAFFSNERLDAKSIEEFYNEGGLYGFVPTATDRK 338
>gi|262039737|ref|ZP_06013017.1| phage terminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259042904|gb|EEW43895.1| phage terminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 432
Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 72/245 (29%), Gaps = 27/245 (11%)
Query: 18 YVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P K S + + ++ M
Sbjct: 127 VAWVDEAESVSATAWKKLRPTVRENGSEIWVTWNPEKDGSATDKLFRKNPPKSSMIVEMN 186
Query: 76 INETPHYNE---QERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + + +ER +++ + +G + S + + + D+ +
Sbjct: 187 YSDNPWFPDVLEEERLEDLENLDYADYAWIWEGAYLENSDKQVLANKYVVQSFEDDLWKK 246
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV-----------AA 180
+ + G DFG+ + ++ D++ +Y+
Sbjct: 247 SERLLFGADFGFAKDPSTLIRMFILDNN-LYIEYEAYGNGVELDDMWKFYAGKTDATPKQ 305
Query: 181 LKSW----GKWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ W P S + + + QG + VE G
Sbjct: 306 LEDWRVTDEAKFPGIPEARKWPIKADNSRPETISHIKGQGFNISAA----QKWQGSVEDG 361
Query: 236 ISDML 240
I+ +
Sbjct: 362 ITCLR 366
>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
Length = 447
Score = 71.7 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 12/227 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKL 235
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H D +V +T V
Sbjct: 236 GFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKAD 295
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G + + G
Sbjct: 296 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKK 342
>gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
Length = 470
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGSDHYLWDGDGVGAGLRRQ 307
>gi|209548746|ref|YP_002280663.1| phage terminase, large subunit, PBSX family [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534502|gb|ACI54437.1| phage terminase, large subunit, PBSX family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 424
Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/254 (12%), Positives = 71/254 (27%), Gaps = 22/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ T +W +E + I + + P +P+ + +
Sbjct: 107 SIKSLEGATK--LWIEEGQNITNGTLNNVIPTIRTEGSEIWTSFNPSVIEAPVWQRLVVK 164
Query: 65 SSSDRQVIRMTINETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE- 120
D V+++ N+ P + E+ER+ + + +G P+ + E
Sbjct: 165 PPPDSVVVKVNHNDNPWFPKVLEEERRHHFVTMDRATYDNIWEGVPMAFTAGAIFREEMA 224
Query: 121 ---------DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + +G G P A V + + + +
Sbjct: 225 AMEKQGRIGKVPHDPTKPVIAVFDMGHAASGKGDPHAIT-FVQQGNGTAVNAIGYWEGNN 283
Query: 172 QT-PIFHVAALKSWGKWL-PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+ P L + PHD + + +G+ G + T D
Sbjct: 284 KPLPTVVQEELIGRPYTISKVVMPHDANRTNSHTGKTDVEIVEGFGFTVEMLERTN-DLD 342
Query: 230 NGVEAGISDMLDRM 243
V + +L M
Sbjct: 343 RDVNN-LRTVLPLM 355
>gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 470
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILVPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+ + + G H P Y ++ ++ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPS------DTGPDAKGYASRHGSVVKRIAEGLLMDINEG 277
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
W DG H G+ + A RRQ
Sbjct: 278 ADWATSLAIEDGADHYLWDGDGVGAGLRRQ 307
>gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
Length = 437
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/262 (11%), Positives = 70/262 (26%), Gaps = 24/262 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRIN-ATQGLVTLTLTPLKGRSPI 57
++ + + + H V DE +DV + + + TP
Sbjct: 130 FRSAD-NPTSIRGESYHLVILDEAAFIKDDVVKYVIKPLLIDYDAPLIEISTPNGHNHFY 188
Query: 58 IEHYLSASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRI 114
+ + +R + R P + + I + + E I +
Sbjct: 189 ESFLMGENRQNRHISFRFPTWSNPFLPKSVIEEIKREFGEDSLVWKQEFCAEFIDDQDAV 248
Query: 115 FPIVEEDIVINSLDI-----PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
F I+S + + G+D + + ++ ++ V R
Sbjct: 249 FKWEYIQQCIDSNIELLTVGEKGHRYVMGVDLAKYQDYTVIIILDVSENPYKLVYFE-RF 307
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+++ + V +K D G+ + Q +P T
Sbjct: 308 KDKPYSYVVERIKELYIKFKPVVCVDS----TGVGDPVVEQLED--CNPIPFKFTNQ--- 358
Query: 230 NGVEAGISDMLDRMRSGRWKVF 251
I+ + + +F
Sbjct: 359 -SKMQLITKLQTALERKEV-IF 378
>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
KW20]
gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
Length = 394
Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 12/227 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 63 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 122
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 123 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKL 182
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H D +V +T V
Sbjct: 183 GFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKAD 242
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G + + G
Sbjct: 243 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKK 289
>gi|282878109|ref|ZP_06286910.1| phage terminase, large subunit, PBSX family [Prevotella buccalis
ATCC 35310]
gi|281299767|gb|EFA92135.1| phage terminase, large subunit, PBSX family [Prevotella buccalis
ATCC 35310]
Length = 423
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/254 (11%), Positives = 72/254 (28%), Gaps = 44/254 (17%)
Query: 15 TVHYV---WFDEE---PPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASS 66
++H + DE E + + I + + + P + + ++ +
Sbjct: 120 SIHGITTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIFIIMNPTDNNHWVYKRFIENTH 179
Query: 67 SDRQV---------------IRMTINET-PHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ I T + + +++ + D + +
Sbjct: 180 KEVMYDGIPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPEKYAHTVMGRWA 239
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP--FAAGHLVWNRDSDVIYVVKNYR 168
+ + V+ G+DFG+ + A + + D +YV + +
Sbjct: 240 DVAEGAVFKHIGVVKEFPKW-CKKVAIGLDFGYTNDVSAAMMCGMID---DNLYVDELFY 295
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+ AL + + +L + G+K+ P + G
Sbjct: 296 RTNMLSSDLIKALHRYEMK----------VFSDSADPRLVQEIHNGGIKIYP----VEKG 341
Query: 229 SNGVEAGISDMLDR 242
+ + AGI M
Sbjct: 342 AGSIIAGIDKMKSL 355
>gi|238027682|ref|YP_002911913.1| gp2 [Burkholderia glumae BGR1]
gi|237876876|gb|ACR29209.1| gp2 [Burkholderia glumae BGR1]
Length = 489
Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 34/251 (13%)
Query: 19 VWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPII-----------EHYLSAS 65
W DE + + L I + ++ P + P +
Sbjct: 169 AWVDEAENVSRESWDVLLPTIREPGSEIIVSFNPNRENDPTWADLVGPYVDRLDEDGCYE 228
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+D +IR + P + E+ R I +
Sbjct: 229 DADTLIIRANYTDNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDELIFAGKWRVE 288
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV------- 178
++ P + G D+G+ + W R +D+I + + +
Sbjct: 289 DIEAPPNTRFFFGADWGFAVDPTTLNRCWVRGNDLIIDYEAHGKQVDLDEIWKLFAGREG 348
Query: 179 ---AALKSW----GKWLPWAWPHDGL--QHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+K W P + D E +S ++ G +
Sbjct: 349 MRPEQIKQWKPVDEFKYPGIPGARKWKIKADCARPETISHVAKQ-GFNIDAA----KKWG 403
Query: 230 NGVEAGISDML 240
VE GI+ +
Sbjct: 404 GSVEDGIAFLR 414
>gi|206599988|ref|YP_002242062.1| gp5 [Mycobacterium phage Konstantine]
gi|206287076|gb|ACI12421.1| gp5 [Mycobacterium phage Konstantine]
Length = 569
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/289 (12%), Positives = 72/289 (24%), Gaps = 57/289 (19%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
Q D + V DE E V+ + L A T +G++ I + Y+
Sbjct: 144 QDPDSLVGEALSGVHLDEAAKMKEIVWTQMLMPSLADFKGWARFTTTPEGKNWIYDTYMD 203
Query: 64 ASSS---------------------------------------DRQVIRMTINETPHYN- 83
A D +++ T++E P
Sbjct: 204 AIKPHKQGWNAFRIPSWYNTGYGALHGDPDGPQPPYPEPTIDTDVKILTRTMDENPGLTA 263
Query: 84 -----------EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN--SLDIP 130
+ E + DS + E G++F + +
Sbjct: 264 FEVAKAMNLTIDSEILQQADSNTIATFNQEFAAEFTDFVGKVFKGFDAETHCRRLPFHRE 323
Query: 131 EHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
W + +D+G+ +P + I ++ P +
Sbjct: 324 SSWETVACVDYGFSNPNVWLLVQIGP-WGEINIINELYQENLAPDEFADEILRRDLLPDS 382
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ L +R+ G ++ T D N I +
Sbjct: 383 CTSFYPDPALPGYTKTLETIFRKAGKRVRARPHTGGD-LNDRLNLIRAV 430
>gi|256826731|ref|YP_003150690.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum
DSM 15641]
gi|256582874|gb|ACU94008.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum
DSM 15641]
Length = 426
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 22/226 (9%)
Query: 20 WFDEEPPEDVYF--EGLTRINATQGLVTLTL---TPLKGRSPIIEH--YLSASSSDRQVI 72
WF+E + + R G T P + + V
Sbjct: 132 WFEELDEFNGWDDISSTLRTYRRGGSRFWTFYSYNPPRSLWSWVNKKALEMQRKRGCVVD 191
Query: 73 RMTINET------PHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
T + E+ + H GE I G+G + +
Sbjct: 192 HSTYLDVIDGGHSDWLGEKFIEDADYEKEEHPTGYRWEFLGE-ITGTGGSVFENVVQVSL 250
Query: 125 NSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ ++ G+D+GW P+ W + + + TP A ++
Sbjct: 251 SDKEVESFDNLRCGVDWGWFPDPWRFVMCEWQPARRRLVLFRELSANRTTPQDTGAMVRE 310
Query: 184 W-----GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + D + D + R+ G+
Sbjct: 311 ALTYRDARHKEPTYHRDAVWCDSAEPSSIDIYRRQCGLNARAADKG 356
>gi|213157748|ref|YP_002320546.1| terminase [Acinetobacter baumannii AB0057]
gi|213056908|gb|ACJ41810.1| terminase [Acinetobacter baumannii AB0057]
gi|323517214|gb|ADX91595.1| putative phage terminase [Acinetobacter baumannii TCDC-AB0715]
Length = 323
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 31/250 (12%)
Query: 8 RDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLKGRSPII 58
+ + DE + + + + R+ Q + T +G
Sbjct: 4 PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTY 63
Query: 59 EHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKGEPI-LG 110
E ++ ++ +I+ + + + + + +SYP A +G+ + L
Sbjct: 64 EQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRGQFVNLT 123
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
SG ++P + + +I + + GMDF A +++ +
Sbjct: 124 SGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRALDELVGV 180
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPECATFDDG 228
TP + + P Q E A ++ G K+
Sbjct: 181 RDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGFKVE--------- 231
Query: 229 SNGVEAGISD 238
NGV GI D
Sbjct: 232 VNGVNPGIKD 241
>gi|169796738|ref|YP_001714531.1| putative phage terminase [Acinetobacter baumannii AYE]
gi|169149665|emb|CAM87555.1| conserved hypothetical protein; putative phage terminase
[Acinetobacter baumannii AYE]
Length = 437
Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 25/256 (9%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 113 RSMEK-PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQASLLNGIDVATTPE 171
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 172 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 231
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 232 QFVNLTSGAVYPDFDRVLNHTDEEIKQGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 288
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD--KRSGEQLSAQYRRQGMKMLPEC 222
TP + + P Q K E A ++ G K+
Sbjct: 289 DELVGVRDTPTMCYLIKERFPDHDITVIPDASGQATSSKGFSESDHAILKKNGFKVEVNG 348
Query: 223 ATF--DDGSNGVEAGI 236
D N V A I
Sbjct: 349 VNPGIKDRINAVNAQI 364
>gi|146329916|ref|YP_001210224.1| BcepGomrgp04 [Burkholderia phage BcepGomr]
gi|145321092|gb|ABP63575.1| BcepGomrgp04 [Burkholderia phage BcepGomr]
Length = 510
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/293 (11%), Positives = 72/293 (24%), Gaps = 75/293 (25%)
Query: 17 HYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT- 75
+ + DE + L +V T P ++ + V++ T
Sbjct: 161 DWPYIDEHG-----NQCLLP--EMPLMVFSTTNPYGPGHNWVKRQFIDIAPPGVVVKTTK 213
Query: 76 -----------------------INETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
E + + + ++R+A G+ + +G
Sbjct: 214 DVFNPRTQKREPVTKTQVRLFGSYKENIYLTPEYVAELESIKDPNKRKAWLHGDWNVVAG 273
Query: 113 RIFPIVEED--IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV----------------- 153
+ + V +IP W D+G HPF G
Sbjct: 274 GAIDDLWREEVHVKPRFNIPASWRVDRSFDWGSTHPFYVGWWAEANGDTATITNPDGTET 333
Query: 154 -WNRDSDVIYVVKNYRCR---------EQTPIFHVAALKSWGKWL--------PWAWPHD 195
W + + + + +K L P
Sbjct: 334 YWTPARGSLILFHEWYGTEEIGTNKGLKLGAKAVAKGIKEIEAQLWRENRILTPVRAGPA 393
Query: 196 ---GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
++ + ++ G+ P + +N G+ + DR+ +
Sbjct: 394 DGQIYNVIQKDVDTIAKVMEDNGVMWKPADKSAGARTN----GLQLLRDRLEA 442
>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
PittGG]
Length = 366
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 12/227 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKL 235
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H D +V +T V
Sbjct: 236 GFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKAD 295
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G + + G
Sbjct: 296 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKK 342
>gi|215484220|ref|YP_002326447.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
gi|213985731|gb|ACJ56030.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
Length = 413
Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 32/256 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 89 RSMEK-PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 147
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 148 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 207
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 208 QFVNLTSGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 264
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP + + P Q E A ++ G K+
Sbjct: 265 DELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKHGFKVE--- 321
Query: 223 ATFDDGSNGVEAGISD 238
+NGV GI D
Sbjct: 322 ------TNGVNPGIKD 331
>gi|227113418|ref|ZP_03827074.1| Terminase large subunit [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 472
Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 7/143 (4%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ V W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--VDICWVEEAEAVTKESWDILIPTIRKPGSEIWVSFNPKNILDDTYQRFVVTPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D ++ + + PH+ E R + + + GEP+ S I E +
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASEMAI-IKREWLEA 223
Query: 125 NSLDIPEHWVQIGGMDFGWHHPF 147
+ + + G H P
Sbjct: 224 ATDAHIKLGWKAKGAIVAAHDPS 246
>gi|224796473|ref|YP_002641230.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224497687|gb|ACN53304.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 450
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/204 (9%), Positives = 57/204 (27%), Gaps = 10/204 (4%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E L R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVLKRLRKGKSIIIFDTNPESPAHFFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + + + GE I+ + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIETQEKLYKHSPAYKARVLYGEWIVNESSL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT--PIFHVAALKS 183
+ + I A L + Y+ ++ + + +++
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIYQDQKPVNDSLMLNSIQVLIEN 333
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQL 207
+ + D + D + +
Sbjct: 334 FNVNTVYIEERDSTKGDGILTKTI 357
>gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201]
gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695]
Length = 223
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 44/155 (28%), Gaps = 9/155 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED--VYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
D + + DE D ++ E + ++ +G TP + + Y
Sbjct: 61 NSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKGYCVFIGTPAGMNNNFYDLYQH 120
Query: 64 -ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS-----GRIFPI 117
+ D + +ET +++E + + + + + I G
Sbjct: 121 ANGAEDWFNYKAKASETKIVDQEELDKAKEVMGEKKYLQEFECDWIANIEGAIYGEEIAK 180
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
+++ + + D G +
Sbjct: 181 LDDKKQLARVPYDPTLPVSTAWDLGVADHSSIIFF 215
>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
10810]
Length = 447
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/230 (11%), Positives = 62/230 (26%), Gaps = 18/230 (7%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKL 235
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVI---YVVKNYRCREQTPIFHVAA 180
+ G G+ + A H D +V YV+ +T V
Sbjct: 236 GFTTKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGYVID---SANRTNQSAVKF 292
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G + + G
Sbjct: 293 KADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKK 342
>gi|293608730|ref|ZP_06691033.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829303|gb|EFF87665.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 430
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 32/256 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 106 RSMEK-PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 164
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 165 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 224
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 225 QFVNLTSGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 281
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP + + P Q E A ++ G K+
Sbjct: 282 DELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGFKVE--- 338
Query: 223 ATFDDGSNGVEAGISD 238
NGV GI D
Sbjct: 339 ------VNGVNPGIKD 348
>gi|260556008|ref|ZP_05828228.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
ATCC 19606]
gi|260410919|gb|EEX04217.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
ATCC 19606]
Length = 435
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 32/256 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 111 RSMEK-PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 169
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 170 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 229
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 230 QFVNLTSGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 286
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP + + P Q E A ++ G K+
Sbjct: 287 DELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGFKVE--- 343
Query: 223 ATFDDGSNGVEAGISD 238
NGV GI D
Sbjct: 344 ------VNGVNPGIKD 353
>gi|257895570|ref|ZP_05675223.1| phage terminase [Enterococcus faecium Com12]
gi|257832135|gb|EEV58556.1| phage terminase [Enterococcus faecium Com12]
Length = 438
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 72/246 (29%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P +E S R + T N+ P
Sbjct: 143 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGRFLFRHWTPNDNPI 202
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E+ +K + D E E G +L G IF + ++ +
Sbjct: 203 LSEERKKELFDELSSSEYLLERDWYGHRVLPQGVIFAMFDKKNKATEIKGNIVETFFTA- 261
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V Y+ + Y + +K + +W
Sbjct: 262 DGGQADATTCAFWVVTHHEGKFYLYRLANYYHSGTETGETKAMSTYAKEIKKFVEWCYTK 321
Query: 192 WPH-DGLQHDKRSG--EQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + L + G++ D + +E GI + + M
Sbjct: 322 WKHLPRWNWFFVDPACKTLRTELDLIGIETDKADNNSSDKVSSNGLKIEVGIERLQNTMT 381
Query: 245 SGRWKV 250
SG++ +
Sbjct: 382 SGQFII 387
>gi|50914907|ref|YP_060879.1| terminase large subunit [Streptococcus pyogenes MGAS10394]
gi|50903981|gb|AAT87696.1| Terminase large subunit [Streptococcus pyogenes MGAS10394]
Length = 212
Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 19/162 (11%)
Query: 93 SYPLHEREART--KGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAA 149
Y + R AR GE + G +F E I GMDFG+ P
Sbjct: 1 MYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVEKTIQRVKETSAGMDFGFTQDPTTL 60
Query: 150 GHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA 209
+ + + +++ + + V ++ + ++L A
Sbjct: 61 ICVAVDLVNKELWLYNEHYQKAMLTDHIVKMIRDKNMHKSYIAADSAE-------KRLIA 113
Query: 210 QYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + +G+ + G + G+ M +K++
Sbjct: 114 EIKSKGVSGIVASL---KGKGSIMQGVQFMQG------FKIY 146
>gi|261881105|ref|ZP_06007532.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332111|gb|EFA42897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 423
Score = 69.4 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/254 (11%), Positives = 72/254 (28%), Gaps = 44/254 (17%)
Query: 15 TVHYV---WFDEE---PPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASS 66
++H + DE E + + I + + + P + + ++ +
Sbjct: 120 SIHGITTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIIIVMNPTDNNHWVYKRFIENTH 179
Query: 67 SDRQV---------------IRMTINET-PHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ I T + + +++ + D + +
Sbjct: 180 KEVMYDGVPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPEKYAHTVMGRWA 239
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP--FAAGHLVWNRDSDVIYVVKNYR 168
+ + V+ G+DFG+ + A + + D +YV + +
Sbjct: 240 DVAEGAVFKHIGVVKEFPKW-CKKVAIGLDFGYTNDVSAAMMCGMID---DNLYVDELFY 295
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+ AL + + +L + G+K+ P + G
Sbjct: 296 RTSMLSSDLIKALHRYEMK----------VFSDSADPRLVQEIHNGGIKIYP----VEKG 341
Query: 229 SNGVEAGISDMLDR 242
+ + AGI M
Sbjct: 342 AGSIIAGIDKMKSL 355
>gi|117621599|ref|YP_853855.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
gi|110890985|gb|ABH02150.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
Length = 450
Score = 69.0 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + + + GE +L + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWVLNESSL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L D Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAVCVLERTFDKFYAYIY 312
>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 447
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 13/228 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKL 235
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H +V +T V
Sbjct: 236 GFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKAD 295
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G PE D N
Sbjct: 296 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKN 343
>gi|218964078|ref|YP_002455438.1| putative phage terminase, pbsx family protein [Borrelia afzelii
ACA-1]
gi|216752969|gb|ACJ73583.1| putative phage terminase, pbsx family protein [Borrelia afzelii
ACA-1]
Length = 450
Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVMKRLRKGKSIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + + + GE +L + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWVLNESSL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L D Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAVCVLERTFDKFYAYIY 312
>gi|297193139|ref|ZP_06910537.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197721315|gb|EDY65223.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 251
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 17/189 (8%)
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSL 127
D + R+ +++ P + + Y R G ++ G ++ + +E +
Sbjct: 13 DLRSWRIRLDDNPSLSAAYIDALRAEYVGLWRRRMIGGTWVIAEGAVYDMFDEQRHVVD- 71
Query: 128 DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR------CREQTPIFHVAAL 181
++P +D+G + F+A +D +Y V +R R+ T A+
Sbjct: 72 ELPPMRRYWVAIDYGTANQFSAILYGLGA-NDRLYAVNEWRPNSWATHRQMTDAQLSRAV 130
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+W S S Q +N V GI +
Sbjct: 131 SAWLDEQQVVPE---WTFIDPSATSFSTQL------WTDRHPVVALANNEVLDGIHSVST 181
Query: 242 RMRSGRWKV 250
+ SG +V
Sbjct: 182 ALGSGLLRV 190
>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
R3021]
gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
22.4-21]
gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
influenzae R2866]
Length = 447
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 13/228 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKL 235
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H +V +T V
Sbjct: 236 GFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKAD 295
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G PE D N
Sbjct: 296 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKN 343
>gi|293399999|ref|ZP_06644145.1| putative phage terminase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306399|gb|EFE47642.1| putative phage terminase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 408
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 6 QGRDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + +T+ Y + DE +V+ +R+ L T P + +
Sbjct: 104 SSVARLRGSTLKYCYGDETVDWNKEVFQLLKSRLRTGYSLFDGTGNPQHPKHWLK--LFI 161
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPL-HEREARTKGEPILGSGRIFPIVEEDI 122
S +D + +++ P R+ + Y E GE G IF ++
Sbjct: 162 DSDADVYCQQYKLDDNPFLPGDVREELKKEYFGTVEYNRYILGEWCNAEGLIFKPYADNP 221
Query: 123 VINSLDIPEHW-VQIGGMDFGWHHPFAAG 150
+ ++I + + G+D G +
Sbjct: 222 KLWEVEILPFFQMVNIGLDIGGTKSHSTL 250
>gi|227551837|ref|ZP_03981886.1| phage terminase, large subunit, PBSX family protein [Enterococcus
faecium TX1330]
gi|227179009|gb|EEI59981.1| phage terminase, large subunit, PBSX family protein [Enterococcus
faecium TX1330]
Length = 432
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 72/246 (29%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P +E S R + T N+ P
Sbjct: 137 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGRFLFRHWTPNDNPI 196
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E+ +K + D E E G +L G IF + ++ +
Sbjct: 197 LSEERKKELFDELSSSEYLLERDWYGHRVLPQGVIFAMFDKKNKATEIKGNIVETFFTA- 255
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V Y+ + Y + +K + +W
Sbjct: 256 DGGQADATTCAFWVVTHHEGKFYLYRLANYYHSGTETGETKAMSTYAKEIKKFVEWCYTK 315
Query: 192 WPH-DGLQHDKRSG--EQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + L + G++ D + +E GI + + M
Sbjct: 316 WKHLPRWNWFFVDPACKTLRTELDLIGIETDKADNNSSDKVSSNGLKIEVGIERLQNTMT 375
Query: 245 SGRWKV 250
SG++ +
Sbjct: 376 SGQFII 381
>gi|313498221|gb|ADR59587.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 511
Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 28/177 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE---DVYF--EGLTRIN---------ATQGLVTLTLTP 50
EQ K+ ++ +DE ++Y R + V T P
Sbjct: 134 EQYEAKFHGQEYSFIGWDELTTWATDEIYESMMSTLRTSYQPTKAQPLMPPLQVRSTTNP 193
Query: 51 L-KGRSPIIEHY----------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER 99
G+ + + D+ I T+ E PH N++ + + +R
Sbjct: 194 WGVGKRWVKARFIDGKISGQIEYKNGQRDKCAIFGTVFENPHLNDEYKHWLRTISDPAKR 253
Query: 100 EARTKGEPILGSGRIFP---IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153
+ G+ ++ +++ IP HW D+G PF
Sbjct: 254 ASWLLGDWEAVDDTAMFAALWKKDVLLMQPFTIPAHWKVERSFDYGQSTPFCCLWTA 310
>gi|184157353|ref|YP_001845692.1| putative phage terminase [Acinetobacter baumannii ACICU]
gi|294839380|ref|ZP_06784063.1| putative phage terminase [Acinetobacter sp. 6013113]
gi|294842832|ref|ZP_06787515.1| putative phage terminase [Acinetobacter sp. 6014059]
gi|294857682|ref|ZP_06795451.1| putative phage terminase [Acinetobacter sp. 6013150]
gi|301345227|ref|ZP_07225968.1| putative phage terminase [Acinetobacter baumannii AB056]
gi|301595737|ref|ZP_07240745.1| putative phage terminase [Acinetobacter baumannii AB059]
gi|183208947|gb|ACC56345.1| putative phage terminase [Acinetobacter baumannii ACICU]
Length = 413
Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 32/256 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 89 RSMEK-PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 147
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 148 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 207
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 208 QFVNLTSGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 264
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP + + P Q E A ++ G K+
Sbjct: 265 DELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGFKVE--- 321
Query: 223 ATFDDGSNGVEAGISD 238
NGV GI D
Sbjct: 322 ------VNGVNPGIKD 331
>gi|222151209|ref|YP_002560363.1| terminase, large subunit [Macrococcus caseolyticus JCSC5402]
gi|222120332|dbj|BAH17667.1| terminase, large subunit [Macrococcus caseolyticus JCSC5402]
Length = 430
Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 39/237 (16%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTL--TLTPLKGRSPIIEHYLSASSS---- 67
+ +W +E E + E + R+ + + + P+ + H+ +
Sbjct: 122 ISLIWLEECSEIKYAGFKELIGRLRHPRLRNYMILSTNPVSKSNWTYLHFFINKDAKVIK 181
Query: 68 ---------------DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART--KGEPILG 110
D T ++ + ++ D R G+
Sbjct: 182 LDDYRLYKEKTIVLGDTYYHHSTADDNYFLPDDYIAQLDDMKNYDIDLHRVARLGQFGAN 241
Query: 111 SGRIFPIVE---EDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKN 166
++ P E D V+ ++ + G+DFG+ A + + + +Y+
Sbjct: 242 GKKVLPQFEVMAHDEVMKVVNRTSARLLKNGLDFGFVTSFNALSRMAIDEKNMWLYIYDE 301
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
+EQ L G+ L A D ++GM +
Sbjct: 302 VYTKEQDDEELYQELAYLGRTLIKADHED----------STIKYLNKKGMNLRKAKK 348
>gi|322507236|gb|ADX02690.1| Putative phage terminase [Acinetobacter baumannii 1656-2]
Length = 378
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 32/256 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 54 RSMEK-PATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPE 112
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 113 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 172
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 173 QFVNLTSGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 229
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP + + P Q E A ++ G K+
Sbjct: 230 DELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGFKVE--- 286
Query: 223 ATFDDGSNGVEAGISD 238
NGV GI D
Sbjct: 287 ------VNGVNPGIKD 296
>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
Length = 379
Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 13/228 (5%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 48 IDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 107
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ + P++ ++ + + +GEP+ S +
Sbjct: 108 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKL 167
Query: 132 HWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ G G+ + A H +V +T V
Sbjct: 168 GFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKAD 227
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMKMLPECATFDDGSN 230
+ H KR + L + G PE D N
Sbjct: 228 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKN 275
>gi|291335182|gb|ADD94806.1| hypothetical protein [uncultured phage MedDCM-OCT-S12-C102]
gi|291336563|gb|ADD96112.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C6]
Length = 555
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/202 (12%), Positives = 58/202 (28%), Gaps = 36/202 (17%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K Y Q + + +WFDE P+ R+ + +G + +T TP++G S ++
Sbjct: 168 FKNYTQDLSTLEGTELDLIWFDELVPQSWVETLKYRLVSRKGKMLITFTPIEGYSSAVKS 227
Query: 61 YL------------------SASSSDRQVIRMTI----------------NETPHYNEQE 86
+ + M P+
Sbjct: 228 AMEGAIIEETREAKLIDPNSPGNIPGVPKGHMPYRARTKNGSGKIFWFYSEWNPYTPFDR 287
Query: 87 RKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHH 145
++ + E E R G +G+ + +IV S + +
Sbjct: 288 LQKTLKGRTREELEIRAYGYVSNPVTGKFPRFTDRNIVKASDIPRQGTNYMVCDPTPGDR 347
Query: 146 PFAAGHLVWNRDSDVIYVVKNY 167
+ + D +++ + +
Sbjct: 348 NWFFLWARVD-DLGRVFIYREF 368
>gi|227499654|ref|ZP_03929757.1| PbsX family phage terminase, large subunit [Anaerococcus tetradius
ATCC 35098]
gi|227218251|gb|EEI83510.1| PbsX family phage terminase, large subunit [Anaerococcus tetradius
ATCC 35098]
Length = 439
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 81/261 (31%), Gaps = 19/261 (7%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINA-TQGLVTLTLTPLKGRSPIIEHYLS 63
K + N+ E +D E R A + L P I ++
Sbjct: 126 SYKKIRGNSFGMWIATEINLHHKDSIKEAFNRTAAAKRRKFFWDLNPSSPNHFIYADHID 185
Query: 64 ASSS---------DRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSG 112
+ TI++ + ++Q +K I Y + + G ++ G
Sbjct: 186 KYQNMIDEGIDFGGYNYKHFTIDDNINISDQRKKEIKLQYDPNSVWYKRDILGLRVVAEG 245
Query: 113 RIFPIVEEDIVINSLDIPEH--WVQIGGMDFGWHHP-FAAGHLVWNRDSDVIYVVKNYRC 169
I+ ++ + H + G+DFG ++ A +R +Y +++ R
Sbjct: 246 LIYKQFADNPDDYLIKEKPHELQMIQIGVDFGGNNSKHAFICCGISRGFKKVYALRSERL 305
Query: 170 REQTPIFHVAALKSWGKWLPWAWPH-DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
P L + + + + + D + D L ++ + +
Sbjct: 306 EPDKPTDLYNQLIDFVRVIQSTYGNVDLIYADSAEQV-LIKGMQKALLDANLNIKIKNSI 364
Query: 229 SNGVEAGISDMLDRMRSGRWK 249
N + I + + S R+
Sbjct: 365 KNPINDRIRLVNTLIASDRFF 385
>gi|239504148|ref|ZP_04663458.1| putative phage terminase [Acinetobacter baumannii AB900]
Length = 413
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 32/256 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINATQGLVTL---TLTPLK 52
++ E+ + + DE + + + + R+ Q + T +
Sbjct: 89 RSMEK-PATIVGFKIGHALIDELDVMAMTKAQQAWRKIIARMRFKQAGLLNGIDVATTPE 147
Query: 53 GRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKG 105
G E ++ ++ +I+ + + + + + +SYP A +G
Sbjct: 148 GFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESYPPQLISAYLRG 207
Query: 106 EPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + L SG ++P + + +I + + GMDF A +++ +
Sbjct: 208 QFVNLTSGAVYPDFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVI---REGKPRAL 264
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPEC 222
TP + + P Q E A ++ G K+
Sbjct: 265 DELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGFKVE--- 321
Query: 223 ATFDDGSNGVEAGISD 238
NGV GI D
Sbjct: 322 ------VNGVNPGIKD 331
>gi|224984406|ref|YP_002641809.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497005|gb|ACN52640.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 450
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/245 (9%), Positives = 66/245 (26%), Gaps = 13/245 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVIKRLRKGKSIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + + + GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWILNESAL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT--PIFHVAALKS 183
+ + I A L + Y+ ++ + + +++
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIYQDQKPVSDSLMLGSIQVLIEN 333
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ + D + D + + R + + + I ++
Sbjct: 334 FNVNTVYIEERDSTKGDGILTKTIL-FLRNKSIN--YFKVAPIKPLSSKFKRICALIPLF 390
Query: 244 RSGRW 248
S +
Sbjct: 391 ESRKI 395
>gi|257887288|ref|ZP_05666941.1| phage terminase [Enterococcus faecium 1,141,733]
gi|257823342|gb|EEV50274.1| phage terminase [Enterococcus faecium 1,141,733]
Length = 438
Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 72/246 (29%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P IE S R + T N+ P
Sbjct: 143 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNIELLERFEKSGRFLFRHWTPNDNPI 202
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E+ +K + D E E G +L G I+ + ++ +
Sbjct: 203 LSEERKKELFDELSSSEYLLERDWYGHRVLPQGVIYAMFGKNNKATEIKGNIIETFFTA- 261
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V Y+ + Y + +K + +W
Sbjct: 262 DGGQADATTCAFWVVTHHEGKFYLYRLANYYHSGTETGETKAMSIYAKEIKKFVEWCYTK 321
Query: 192 WPH-DGLQHDKRSG--EQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + L + G++ D + +E GI + + M
Sbjct: 322 WKHLPRWNWFFVDPACKTLRTELDLIGIETDKADNNSSDKVSSNGLKIEVGIERLQNTMT 381
Query: 245 SGRWKV 250
SG++ +
Sbjct: 382 SGQFII 387
>gi|283765957|gb|ADB28373.1| phage terminase large subunit [Bacillus phage 250]
Length = 425
Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 76/235 (32%), Gaps = 17/235 (7%)
Query: 31 FEGLTRINATQGLVTL-TLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKR 89
E R A Q L L P P+I ++ T N+ P +EQ ++
Sbjct: 143 QECFRRTFAAQDRYHLADLNPPAPNHPVISEVFDVQNTRWT--HWTPNDNPILSEQRKQE 200
Query: 90 IIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPF 147
I D + E G+ ++ G I+ + + + + + + + D G
Sbjct: 201 IYDVLSKNPYLLERDWYGKRVMPQGVIYSMFDMNKNVEHAVLGDRYEMFFTADGGQSDAT 260
Query: 148 AAGHLVWNRDSDVIYVVK--NYRCRE-QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG 204
+ + R D +++ +Y +T ++ + L W Q
Sbjct: 261 SCACNIVTRFKDKFRLMRVAHYYHSGAETGQVKAMSVYAKEIKLFIEWCVRRFQMRYTEV 320
Query: 205 ------EQLSAQYRRQGMKMLPECATFDDGSNGV---EAGISDMLDRMRSGRWKV 250
+ L + G+ D S+ E GI + + M + ++ +
Sbjct: 321 FVDPACKSLREELHLLGINTTGADNNAHDVSSSAKGMEVGIERLQNLMTNEQFYI 375
>gi|300922509|ref|ZP_07138621.1| phage terminase large subunit [Escherichia coli MS 182-1]
gi|300421167|gb|EFK04478.1| phage terminase large subunit [Escherichia coli MS 182-1]
Length = 240
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDICWVEEAEAVTKESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPP 164
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIF 115
D ++ + + PH+ E R + + + GEP+ S
Sbjct: 165 DDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAI 215
>gi|290466769|gb|ADD25699.1| putative terminase large subunit [Lactococcus phage 1358]
Length = 454
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/250 (13%), Positives = 71/250 (28%), Gaps = 22/250 (8%)
Query: 12 QSNTVHYVWFDEEPPED------VYFEGLTRINATQGL-VTLTLTPLK-GRSPIIEHYLS 63
Q V ++ ++E + L R + V + P K + EH
Sbjct: 152 QGF-VRFIHYEEADEFESPQDFRTINASLLRGSDDITPAVFYSYNPPKIRGHWLNEHVRD 210
Query: 64 -ASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIF 115
+ V + + + + + G + +F
Sbjct: 211 LTGTPMNYVSHTNFLTCYKLHPEWLGKTFLAEAFHTMKYNRRQFDWEYLGLDVATGNEVF 270
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+E ++ + G+DFG+ PF ++R D +Y+
Sbjct: 271 NNIESRVITQEERDNFEDYRKSGVDFGFSKDPFVYVDAYFDRKRDTVYLWNEVFQTRLKN 330
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
V +KS L + + +++ G+ + G V+
Sbjct: 331 KAAVEKVKSRNPSTYKGGARGRLIKADAAEPRTISEFYDLGLDITRS----KKGKGSVDH 386
Query: 235 GISDMLDRMR 244
G+ + DR +
Sbjct: 387 GVKWLSDRTK 396
>gi|293568929|ref|ZP_06680242.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E1071]
gi|291588362|gb|EFF20197.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E1071]
Length = 429
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 72/246 (29%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P IE S R + T N+ P
Sbjct: 134 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNIELLERFEKSGRFLFRHWTPNDNPI 193
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E+ +K + D E E G +L G I+ + ++ +
Sbjct: 194 LSEERKKELFDELSSSEYLLERDWYGHRVLPQGVIYAMFGKNNKATEIKGNIIETFFTA- 252
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V Y+ + Y + +K + +W
Sbjct: 253 DGGQADATTCAFWVVTHHEGKFYLYRLANYYHSGTETGETKAMSIYAKEIKKFVEWCYTK 312
Query: 192 WPH-DGLQHDKRSG--EQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + L + G++ D + +E GI + + M
Sbjct: 313 WKHLPRWNWFFVDPACKTLRTELDLIGIETDKADNNSSDKVSSNGLKIEVGIERLQNTMT 372
Query: 245 SGRWKV 250
SG++ +
Sbjct: 373 SGQFII 378
>gi|330996205|ref|ZP_08320095.1| phage terminase, large subunit, PBSX family [Paraprevotella
xylaniphila YIT 11841]
gi|329573709|gb|EGG55300.1| phage terminase, large subunit, PBSX family [Paraprevotella
xylaniphila YIT 11841]
Length = 430
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/264 (14%), Positives = 78/264 (29%), Gaps = 51/264 (19%)
Query: 15 TVHYV---WFDEE---PPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASS 66
++H + DE E + + + I + + + P I + Y+ +
Sbjct: 126 SIHGITTFVCDEAEEWTNEQDFDKIMLSIRQKGIQNRIIIIMNPTDSNHFIYKKYIENTH 185
Query: 67 ---------------SDRQVIRMTINET-PHYNEQERKRIIDSYPLHE--REARTKGEP- 107
+ I T + + + Q K + + G
Sbjct: 186 KLVEIDGVPVQISTHPNVLHIHTTYFDNIDNLSPQFIKEVEQMKAENPEKYAHTVIGRWA 245
Query: 108 ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNY 167
+ G I+ I G+DFG+ H A + D+D +Y+ +
Sbjct: 246 DVAEGAIYKKWGVVKSI----PQWCKKIALGLDFGFTHDETAIVMCGVMDND-LYIDEIC 300
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ + L+ + A D +L + G+++ P +
Sbjct: 301 YKTQMLTKDIIQTLRPYQGMKVIADSAD---------PRLIQEIHNAGIRIYP----VEK 347
Query: 228 GSNGVEAGISDMLDRMRSGRWKVF 251
G V AGI ++ + +F
Sbjct: 348 GKGSVIAGIE------KAKEFNIF 365
>gi|170764163|ref|ZP_02633320.2| phage terminase, large subunit, pbsx family [Clostridium
perfringens E str. JGS1987]
gi|170661287|gb|EDT13970.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens E str. JGS1987]
Length = 441
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/264 (13%), Positives = 78/264 (29%), Gaps = 20/264 (7%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPIIEHYLS 63
K + N+ E D E R A + V L P + I + Y+
Sbjct: 123 SYKKIRGNSYGMWIATEINLHHPDSIKEAFNRTIAAHKRKVFWDLNPDNPNAFIYKDYID 182
Query: 64 ASSSDRQ---------VIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSG 112
S + TI++ + +++ ++ I Y + + G+ + G
Sbjct: 183 NYKSKYENGELKGGYNYYHFTIDDNINISDERKEEIKSQYDKNSIWYQRDILGKRCVAEG 242
Query: 113 RIFPIVEED---IVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVV--KN 166
I+ + D+ + G+DFG A + ++ +
Sbjct: 243 LIYRRFANNPNSYRAEESDVSNLMKIVIGVDFGGTGSGHAFIASAITFGYKKVIILSSER 302
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + ++ K + + + + + + + L R +K D
Sbjct: 303 HFGDDIDSEKLGKIFINFVKKINYKYGFAEVAYCDNAEQVLIRTLRNAAIKAGLSIRVTD 362
Query: 227 DGSNGVEAGISDMLDRMRSGRWKV 250
V I+ M R ++
Sbjct: 363 AWKTTVNDRINATTKLMAQDRLQI 386
>gi|219872451|ref|YP_002476937.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694305|gb|ACL34832.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 450
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/214 (9%), Positives = 61/214 (28%), Gaps = 11/214 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P ++
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVIKRLRKGKAIIIFDTNPEGPTHFFKTDFIENK-D 216
Query: 68 DRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + + + + GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIETQKKLYKHLPAYKARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT--PIFHVAALKS 183
+ + I A L + Y+ ++ + + +++
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERAFEKFYAYIYQDQKPVSDSLMLGSIQVLIEN 333
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK 217
+ + D ++ D + + R + +
Sbjct: 334 FNVNTVYIEERDSIKGDGILTKTIL-FLRDKSIN 366
>gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 483
Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/183 (9%), Positives = 46/183 (25%), Gaps = 14/183 (7%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDIAWVEEAEAVTKESWDILIPTIRKPGSEIWVSFNPKNILDDTYQRFVVNPL 164
Query: 67 SDRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIV------ 118
D ++ + + PH+ E R + +GEP+ S
Sbjct: 165 DDICLLTVHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAA 224
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV--WNRDSDVIYVVKNYRCREQTPIF 176
+ + D + A + D D + + +
Sbjct: 225 VDAHMTLGFDAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNRVNRY 284
Query: 177 HVA 179
+
Sbjct: 285 AIE 287
>gi|157325367|ref|YP_001468786.1| TerL [Listeria phage P35]
gi|66733372|gb|AAY53187.1| TerL [Listeria phage P35]
Length = 440
Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/227 (10%), Positives = 57/227 (25%), Gaps = 19/227 (8%)
Query: 27 EDVYFEGLTRINATQ-GLVTLTLTPLKGRSPIIEHYLS--ASSSDRQVIRMTIN-ETPHY 82
+ R T P K + + +++ + V T H+
Sbjct: 167 FSIVNSSYMRGEGTGDSRAFYLYNPPKYKGHWLNNWVDVIRDEPSQYVHHSTFIPIALHH 226
Query: 83 NE----QERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGG 138
E + + + + + D+ + G
Sbjct: 227 PEWLGSTWLESARLVRDKNPNRYEWEFLGRNVNTGNEVFPNAVQEHITFDMIDGLRPYEG 286
Query: 139 MDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGL 197
D G+ P + ++ D +Y+ + + + + D
Sbjct: 287 FDEGYTADPSVWLRVFYDEQRDTVYITDELVMKRYKTKALAKDILNVQEGSYNIVRGDSA 346
Query: 198 QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
++ + R G+ L N V G + + +R++
Sbjct: 347 N------PRVLDEMRDLGVNAL----AVSKSPNSVPHGTNWLANRIK 383
>gi|37527280|ref|NP_930624.1| hypothetical protein plu3406 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786714|emb|CAE15780.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 418
Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 66/245 (26%), Gaps = 26/245 (10%)
Query: 6 QGRDKWQSNTVHYVWFDEEPP--EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
Q + W +E +D + + A + V ++ P + P +
Sbjct: 109 QSIKSMHGIKI--CWVEEAQTVSQDSWDILGPTVRANKSEVWVSFNPREEEDPTYKLMTR 166
Query: 64 ASSS----DRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI 117
+ ++ + + + R+ + + E G P S +
Sbjct: 167 HQEDPSDGGVIIRKVNYCDNAFFPDVLRQEMEYCKRIDYEAYEHIWLGLPKALSEAVIFS 226
Query: 118 VEEDIVINSLDIPEHWVQ-IGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ + S ++ + G DFG+ + P +Y+
Sbjct: 227 GKYRVEAFSDELWLEADRLFYGADFGFANDPSTLVRCFI--IGTKLYIEYEAYGVGV--- 281
Query: 176 FHVAALKSWGKWLPWAWPHDGL-QHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
L ++ H S + + RQG + VE
Sbjct: 282 ----ELDEMPQFYDSVPLSRKWPIHGDSSRPETISYLSRQGFVIDGA----TKWPGSVED 333
Query: 235 GISDM 239
GI+ +
Sbjct: 334 GITYL 338
>gi|225621691|ref|YP_002724049.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547649|gb|ACN93626.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 42/159 (26%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYTFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|262039284|ref|ZP_06012601.1| phage terminase, large subunit, pbsx family [Leptotrichia
goodfellowii F0264]
gi|261746674|gb|EEY34196.1| phage terminase, large subunit, pbsx family [Leptotrichia
goodfellowii F0264]
Length = 438
Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/240 (11%), Positives = 67/240 (27%), Gaps = 40/240 (16%)
Query: 19 VWFDEEPPED--VYFEGLTRINATQGLV--TLTLTPLKGRS------PIIEHYLSASSS- 67
+W +E D + + R+ + ++ P + S + Y++ +
Sbjct: 121 IWIEEANQCDRNDFKQLRYRLRTPNIKMHMYISTNPAEPDSASNWTYWFLTDYMNVTEET 180
Query: 68 --------------------DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
V T E E + + +G+
Sbjct: 181 LYDVKEFIKSIEDKETGYIQRIYVNHSTYKENKFLPESAVAELNMETDPYLISIAKEGKF 240
Query: 108 ILGSGRIFPIVEEDIVINSLDIPEHW---VQIGGMDFGWH-HPFAAGHLVWNRDSDVIYV 163
++ +E + + + I GMDFG+ A + +++++YV
Sbjct: 241 GYHGEFVYYNIESENNQYVDEQIKRIGIEWHIAGMDFGFSISYTAVVRAAIDYENNILYV 300
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
+ + T + A + D + + +++ G+ M
Sbjct: 301 YDEFYNKGLTNAQ----ILQEDFLYDVAEEGIVIYADYAEPKTI-QEFKANGVLMAKADK 355
>gi|247553003|gb|ACS94840.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 42/159 (26%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|224796679|ref|YP_002641707.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553883|gb|ACN55283.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E + E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHRETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWILNESML---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|219807285|ref|YP_002477581.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
gi|224797061|ref|YP_002642778.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225571759|ref|YP_002724342.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|219692550|gb|ACL33771.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
gi|223929616|gb|ACN24327.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225547179|gb|ACN93166.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 42/159 (26%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|219499179|ref|YP_002455350.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
ZS7]
gi|218164189|gb|ACK74256.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
ZS7]
Length = 450
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E + E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHRETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIQAQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|11496928|ref|NP_045704.1| hypothetical protein BBA31 [Borrelia burgdorferi B31]
gi|195942693|ref|ZP_03088075.1| hypothetical protein Bbur8_07694 [Borrelia burgdorferi 80a]
gi|224796822|ref|YP_002642504.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|224796893|ref|YP_002642572.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|225573840|ref|YP_002724449.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
gi|226234883|ref|YP_002775758.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|2690260|gb|AAC66261.1| conserved hypothetical protein [Borrelia burgdorferi B31]
gi|221237191|gb|ACM10059.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|224554443|gb|ACN55827.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|225546432|gb|ACN92439.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
gi|226202357|gb|ACO38016.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|247552767|gb|ACS94776.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E + E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHRETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|247553170|gb|ACS94899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E + E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHRETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|319649444|ref|ZP_08003600.1| TerL protein [Bacillus sp. 2_A_57_CT2]
gi|317398606|gb|EFV79288.1| TerL protein [Bacillus sp. 2_A_57_CT2]
Length = 433
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 74/256 (28%), Gaps = 32/256 (12%)
Query: 19 VWFDEEPPE------DVYFEGLTR--INATQGLVTLTLTPLK----GRSPIIEHYLSASS 66
+WF+E D+ + R I + V + P + + ++ A
Sbjct: 130 LWFEEAAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLD--TKAED 187
Query: 67 SDRQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
D + T + +EQ ++I E R + +
Sbjct: 188 DDYFIHHSTYLDDEKGFLSEQMIRKIEKYKENDEDYWRWMYAGEVIGLGDMVYNMDHFHE 247
Query: 125 NS--LDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIF 176
+ + + +D G + + +VI + Y ++ P
Sbjct: 248 IDALPEDDDLILIDIAIDTGHQVSATTFLAFGFTKKRNVILLDTFYYSPENKVVKKAPSE 307
Query: 177 HVAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
LK W + + D D G + ++ G+++ P
Sbjct: 308 LSKDLKEWIDKIQQTYKRHFDKQTIDSAEGALRNQFFKDYGIRLHPVTKKKK------ID 361
Query: 235 GISDMLDRMRSGRWKV 250
I ++ D + GR+ V
Sbjct: 362 MIDNVQDLLAQGRFFV 377
>gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
Length = 449
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 14/177 (7%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + VW +E + + + I + + +T P P + ++ A
Sbjct: 108 KSLEG--IDLVWIEEAENVSNESWDILIPTIRKERSEIWVTFNPKNILDPTYQRFVIAPP 165
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
+ V ++ +E P++ E R + + GEP+ S ++
Sbjct: 166 KNSFVRKINYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECA 225
Query: 125 NSLDIPEHWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
++ G G+ + A H D + ++T
Sbjct: 226 VDAHKKLGFLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRT 282
>gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127]
gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127]
Length = 445
Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 14/177 (7%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + VW +E + + + I + + +T P P + ++ A
Sbjct: 104 KSLEG--IDLVWIEEAENVSNESWDILIPTIRKERSEIWVTFNPKNILDPTYQRFVIAPP 161
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
+ V ++ +E P++ E R + + GEP+ S ++
Sbjct: 162 KNSFVRKINYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECA 221
Query: 125 NSLDIPEHWVQIGGMDFGWH--------HPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
++ G G+ + A H D + ++T
Sbjct: 222 VDAHKKLGFLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRT 278
>gi|166031069|ref|ZP_02233898.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC
27755]
gi|166029336|gb|EDR48093.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC
27755]
Length = 454
Score = 65.6 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 64/252 (25%), Gaps = 24/252 (9%)
Query: 16 VHYVWFDEEPPE----------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL--S 63
+ V DE R N++ + P K + I +
Sbjct: 118 IKLVVLDELTEFFDDGEGEDELSNIEATFVRGNSSGFQMIYLYNPPKNPNAPINQWCKKM 177
Query: 64 ASSSDRQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE 119
D I + P + E G+ + I+ +
Sbjct: 178 EKREDCIHIHTDYRDVPVSWLGQALVDSAEAMKRADEKMYRWVWLGQAVGVDELIYYMFG 237
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QT 173
+ + G D+G + + I + Y ++
Sbjct: 238 DRHRQKPDPNRRYDRIYIGGDYGQQNATTFEAFGLDTYRKKIPGLGEYYHSGRETGKQKS 297
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATF-DDGSNG 231
P + L + L + + S + L+ + RR + + F D N
Sbjct: 298 PSEYAQDLVEFMNELHEQYDNRVFYIFLDPSAKGLAEEIRRATRAVSLDYQVFLRDAEND 357
Query: 232 VEAGISDMLDRM 243
V GIS + +
Sbjct: 358 VALGISRVQKVL 369
>gi|194100616|ref|YP_002003365.1| gp7 [Mycobacterium phage Predator]
gi|192758332|gb|ACF05104.1| gp7 [Mycobacterium phage Predator]
Length = 569
Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/293 (11%), Positives = 70/293 (23%), Gaps = 57/293 (19%)
Query: 5 EQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
Q D + V DE E V+ + L A T +G++ I + Y
Sbjct: 143 AQDPDSLVGEGLSGVHVDEAAKMKEIVWKQMLFPSLADFKGWARFTTTPEGKNWIYDLYT 202
Query: 63 SASSSDRQVI---------------------------------------RMTINETPHYN 83
A ++ M +++ P
Sbjct: 203 DAIKPHKRGWNGFRIPSWYNTGYGALHGDPNGPQPPYPEPTIDQHVKMLTMAMDDNPGLT 262
Query: 84 ------------EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS--LDI 129
+ E + DS + E G++F + +
Sbjct: 263 AFEIAKSLNLTIDSEILQQADSNTIATFNQEFAAEFTDFVGKVFKGFDVETHCRRLKFHT 322
Query: 130 PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP 189
W +G +D+G+ +P + I ++ P +
Sbjct: 323 ESSWRTVGCVDYGFSNPNVWLLVQIGP-WGEINILDELYQENLAPDEFAREILRRNLVPD 381
Query: 190 WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ L +R+ G + T + N I ++
Sbjct: 382 NCDSFFPDPALPGYTKTLETIFRQAGKRCRARPHTGGE-INDRLNLIRAVIKA 433
>gi|203288609|ref|YP_002223516.1| bsr protein [Borrelia duttonii Ly]
gi|201084316|gb|ACH93904.1| bsr protein [Borrelia duttonii Ly]
Length = 450
Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 53/196 (27%), Gaps = 8/196 (4%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + + V+ +E ++ E + R+ G++ P Y+
Sbjct: 158 KIRGSNSALVYVNEATLMHKETLLEIMKRLRQKPGIIIFDTNPDHPAHYFKVDYIDN-RD 216
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPL-HEREAR-TKGEPILGSGRIFPIVEEDIVIN 125
+ I + P ++ K Y +AR GE E I+
Sbjct: 217 VYRTYNFNIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWTASIDSC---FNEVILNC 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+ I A D Y+ ++ + I H ++ +
Sbjct: 274 EYTFKSPIMYIDPAFSVGMDNTAICVFEKMGDKYYAYIYQDKKPISDESILHAISVFAED 333
Query: 186 KWLPWAWPHDGLQHDK 201
+ + D D
Sbjct: 334 FNINTLYIEDRDNTDG 349
>gi|33594269|ref|NP_881913.1| putative phage terminase [Bordetella pertussis Tohama I]
gi|33564344|emb|CAE43647.1| putative phage terminase [Bordetella pertussis Tohama I]
Length = 425
Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 79/269 (29%), Gaps = 34/269 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDV------YFEGLTRINATQ----GLVTLTLTPL 51
++ E+ D + DE + + + R+ T V +T TP
Sbjct: 102 RSMEKPGD-IVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD-------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
G + + ++ V T + E + SYP A +
Sbjct: 161 -GFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLR 219
Query: 105 GEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ L SG ++ + + H GMDF + A +++ + +
Sbjct: 220 GQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVI---RAGLPLT 276
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPW---AWPHD--GLQHDKRSGEQLSAQYRRQGMKM 218
V TP LK K +P G K + E + R+ G +
Sbjct: 277 VGELTKVRDTPE-MARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTV 335
Query: 219 LPECATFDDGSNGVEAGISDMLDRMRSGR 247
V+ I+ + + +
Sbjct: 336 RVNSRNP-----SVKDRINAVNGMLLNDE 359
>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
Length = 450
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 54/211 (25%), Gaps = 19/211 (9%)
Query: 14 NTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
+ W +E ++ + + I + LT P P + ++ D
Sbjct: 111 EAIDICWIEEAENVSDESWNILIPTIRKAGSEIWLTWNPKNILDPTYQRFVVNPPDDMVD 170
Query: 72 IRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVE------EDIV 123
I + + + E R + GEP+ S + + +
Sbjct: 171 IVVNYTDNIYLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHI 230
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+ + + A R V+ + +R ++ L
Sbjct: 231 KLGFEATGQRILGFDVADEGDDASATIL----RHGSVVIDMDEWRGQDVIYSADKVYLYG 286
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
G + AQ+RR+
Sbjct: 287 QEAKADKIVYDSI-----GVGAGVKAQFRRK 312
>gi|227530602|ref|ZP_03960651.1| PBSX family phage terminase, large subunit [Lactobacillus vaginalis
ATCC 49540]
gi|227349490|gb|EEJ39781.1| PBSX family phage terminase, large subunit [Lactobacillus vaginalis
ATCC 49540]
Length = 227
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 14/170 (8%)
Query: 82 YNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMD 140
+ + P + G + G G I+ +E + D+P+ I G+D
Sbjct: 1 MPAEYVSALKAQTPSGMFTDRAIYGLWVTGEGAIYRDFDE-RKMVVNDVPKMVRYIAGID 59
Query: 141 FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD 200
+G++HP + + +S+ Y+V R + + + K + D
Sbjct: 60 WGYNHPCSITVFGIDANSN-YYLVDEKTERFKEIDYWTKVARKLQKKYGY---KMPFYCD 115
Query: 201 KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
E ++ G+ L G V GI + M+SGR+ V
Sbjct: 116 TARTE-FIDHFKHNGINALY-------GWKLVVPGIEIVAGLMKSGRFFV 157
>gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
Length = 449
Score = 65.2 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + VW +E + + + I + + +T P P + ++ A
Sbjct: 108 KSLEG--IDLVWIEEAENVSNESWDILIPTIRKERSEIWVTFNPKNILDPTYQRFVIAPP 165
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIF 115
+ V ++ +E P++ E R + + GEP+ S ++
Sbjct: 166 KNSFVRKINYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVI 216
>gi|226246423|ref|YP_002775825.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226201818|gb|ACO38403.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 450
Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 8/159 (5%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E + E + R+ + ++ P Y+ +
Sbjct: 158 KIRGGNSAIIYVNEATVIHRETLLEVIKRLRKGKEIIIFDTNPESPAHYFKTDYIENT-D 216
Query: 68 DRQVIRMTINETPHYNEQER--KRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ T + P + + + R GE IL + E I
Sbjct: 217 VFKTYNFTTYDNPLNSTDFIQTQEKLYRRFPAYRARVLYGEWILNESTL---FNEMIFNQ 273
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
+ + I A L + Y+
Sbjct: 274 DYEFKSPIMYIDPAFSVGGDNTAICVLERTFEKFYAYIY 312
>gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605]
gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 414
Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 15/253 (5%)
Query: 8 RDKWQSNTVHYVWFDEEPP----EDVYFEGLTRI--NATQGLVTLTLTPLKGRSPIIEHY 61
D + DE ++++ L + + G V + TP G + E +
Sbjct: 106 ADSLRGQRADRFAIDEYCYIRDLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELW 165
Query: 62 LSASS-SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
A + + ++ + G G ++P +
Sbjct: 166 ERAETAEGWARWNFPSVAGGWVKPEYVEQARQTMDPSLWRQEFFGSIESLLGAVYPAFNQ 225
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ +++D + G DF V DV+ V++ E A
Sbjct: 226 QNISDTVD--NGGPLLVGCDFNRSP---FCGCVLQVQGDVVVVLEEIVLIEADTREFALA 280
Query: 181 LKSWGKWLPWAWPHDGLQHDKRS---GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ D K++ G + G + + V A
Sbjct: 281 VRERYPQRMIHCAPDPTGSRKQTSSLGLSDHKILQESGGFKICTPRAPWAIKDKVNATRL 340
Query: 238 DMLDRMRSGRWKV 250
+LD R +V
Sbjct: 341 MVLDAAGRRRLQV 353
>gi|160932962|ref|ZP_02080351.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753]
gi|156868036|gb|EDO61408.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753]
Length = 428
Score = 64.8 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 23/262 (8%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTL-TLTPLKGRSPIIEHYLSAS 65
+ ++ V+F E D E R A++ + L P P+I +
Sbjct: 118 KSFTGMSLGSVYFCEINLLHIDAIQEAFRRTCASRIRWHIADLNPPAPSHPVISEVFNIQ 177
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVE--ED 121
+ TI++ P + ++ I + + + GE + G I+ + +
Sbjct: 178 DTQWT--HWTIDDNPIITPERKEEIRKTCLKNPYLYKRDWLGERCIPQGVIYSMFDPQRH 235
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD---VIYVVKNYRCREQ----TP 174
I+ D D G + G V R +Y V + T
Sbjct: 236 ILSYIPDSESKIEMYFAGDGGLSDATSIGCYVVTRTMQNQFKLYRVAGWYYSGADIGITK 295
Query: 175 IFHVAALKSWGKWLPWAW----PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD--- 227
V A + G ++P+ + + + L A++ G D
Sbjct: 296 AMSVQAREICGSFIPYCRQLTSMRESSIKIDPACKALCAEFDLLGYYTDRADNNARDIKG 355
Query: 228 GSNGVEAGISDMLDRMRSGRWK 249
G+E GI + + GR+
Sbjct: 356 ARKGIEVGIEYLQSSISDGRFY 377
>gi|315149883|gb|EFT93899.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0012]
Length = 429
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P +E S R + T ++ P
Sbjct: 134 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGRFLFRHWTPDDNPI 193
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E ++++ D E E G ++ G I+ + ++ +
Sbjct: 194 LSESRKQQLYDELSSSEYLLERDWYGHRVIPQGVIYSMFGKNNKATEIKGNIIETFFTA- 252
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V Y+ + Y + +K + +W
Sbjct: 253 DGGQADATTCAFWVVTFYDGKFYLYRLANYYHSGTDTGETKAMSIYAKEIKRFVEWCYTK 312
Query: 192 WPHDGLQHD---KRSGEQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + + + L ++ G+ D + +E GI + + M
Sbjct: 313 WNHLPHWNYFFVDPACKTLRSELELLGIGTDKADNNSSDKVSSNGLKIEVGIERLQNTMT 372
Query: 245 SGRWKV 250
SG++ V
Sbjct: 373 SGQFIV 378
>gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 438
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + VW +E + + + I + + +T P P + ++ A
Sbjct: 97 KSLEG--IDLVWIEEAENVSNESWDILIPTIRKERSEIWVTFNPKNILDPTYQRFVIAPP 154
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIF 115
+ V ++ +E P++ E R + + GEP+ S ++
Sbjct: 155 KNSFVRKINYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVI 205
>gi|290513013|ref|ZP_06552377.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55]
gi|289774626|gb|EFD82630.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55]
Length = 435
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/282 (14%), Positives = 87/282 (30%), Gaps = 43/282 (15%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINAT----QGLVTLTLTPL 51
++ E+ D + DE + + + R+ + + +T TP
Sbjct: 105 RSMEK-PDTIVGFKIGNALVDELDVLKADKARQAWRKIIARMRYKVDGLRNGIDVTTTPE 163
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + ++ A +++ + + + + ++ SYP +A
Sbjct: 164 -GFKFVYNQFVKAVREKPELRSMYGLVQASTFDNEKNLPDDYIPSLLASYPPELIKAYLN 222
Query: 105 GEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ L SG I+ + + +S + GMDF H++ + +
Sbjct: 223 GQFTNLTSGTIYHQFDRVLNNSSEEEQPGEALYIGMDFNVGKMAGIVHVL---RLGLPHA 279
Query: 164 VKNYRCREQTPIF----------HVAALKSWGKWLPWAWPHDGLQHDKRSG-EQLSAQYR 212
V TP + + + G + + Q R
Sbjct: 280 VTEIINAYDTPDMIRIIKERFWLYADGDYRKVREIYIYPDASGDSRKSNNASKTDIEQLR 339
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRMRSG----RWKV 250
+ G ++ + A V+ I+ M +G R+KV
Sbjct: 340 QAGFNVIVDDANPP-----VKDRINSMNAMFCNGNGDRRYKV 376
>gi|301382086|ref|ZP_07230504.1| hypothetical protein PsyrptM_05618 [Pseudomonas syringae pv. tomato
Max13]
gi|302061639|ref|ZP_07253180.1| hypothetical protein PsyrptK_16760 [Pseudomonas syringae pv. tomato
K40]
gi|302131811|ref|ZP_07257801.1| hypothetical protein PsyrptN_10492 [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 433
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 80/271 (29%), Gaps = 38/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRIN----ATQGLVTLTLTPL 51
++ E+ V + DE + + + + R+ + V +T TP
Sbjct: 102 RSMEK-PQTIVGFKVGHALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + ++ +I+ + + + + +++SYP A
Sbjct: 161 -GFKFVFLQFVKQLRDKPALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQLIRAYLN 219
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + GMDF A RD +
Sbjct: 220 GQFVNLTSGSIYHAYDRKLNQCFDTVQAGEPLFIGMDFNVGKMAAIT--HVKRDKGLPRA 277
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD--KRSGEQL---------SAQYR 212
V + TP + + + + SG+ A +
Sbjct: 278 VDEFMDGYDTPDMIRRIKERYWRHDGDKYIKSCEIRIYPDASGDSRKSVNASVTDIAMLK 337
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G ++ A V+ I+ M
Sbjct: 338 QAGFTVIAPAANPP-----VKDRINAMNAMF 363
>gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 384
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 56/213 (26%), Gaps = 21/213 (9%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ +
Sbjct: 48 IDVVWVEEGENVSKESWDVLIPTIREDGSQIIVSFNPKNLLDDTYQRFVINPPERCCSVL 107
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRI------FPIVEEDIVIN 125
+ + P++ ++ + + +G+P+ S +
Sbjct: 108 VNWQDNPYFPKELMEDMKQMKERDFELYRHVYEGQPVADSDLAIIKPLWIEKAVDAHKKL 167
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
V + A V+ V +R + H
Sbjct: 168 GFTASGRKVVGFDVADEGIDANANCFAH----GSVVLQVDEWRGDDVIQSAH------RT 217
Query: 186 KWLPWAWPHDGLQHDK-RSGEQLSAQYRRQGMK 217
W D + D G + A+YRR K
Sbjct: 218 HTNAVMWGVDEIVFDSIGVGAGVKAEYRRMDTK 250
>gi|203288341|ref|YP_002223391.1| bsr protein [Borrelia recurrentis A1]
gi|201085561|gb|ACH95134.1| bsr protein [Borrelia recurrentis A1]
Length = 412
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 8/196 (4%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + + V+ +E ++ E + R+ G++ P Y+
Sbjct: 120 KIRGSNSALVYVNEATLMHKETLLEIMKRLRQKPGIIIFDTNPDHPAHYFKVDYIDN-RD 178
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPL--HEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ +I + P ++ K Y + GE E I+
Sbjct: 179 VYRTYNFSIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWTASIDSC---FNEVILNC 235
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+ I A D Y+ ++ + I H ++ +
Sbjct: 236 EYTFKSPIMYIDPAFSVGMDNTAICVFEKMGDKYYAYIYQDKKPISDESILHAISVFAED 295
Query: 186 KWLPWAWPHDGLQHDK 201
+ + D D+
Sbjct: 296 FNINTLYIEDRDNTDR 311
>gi|317058064|ref|ZP_07922549.1| LOW QUALITY PROTEIN: terminase [Fusobacterium sp. 3_1_5R]
gi|313683740|gb|EFS20575.1| LOW QUALITY PROTEIN: terminase [Fusobacterium sp. 3_1_5R]
Length = 251
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 66/187 (35%), Gaps = 10/187 (5%)
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIP 130
+ T+ + P +E ++++ Y E G ++ G ++ I+ ++ I+ +IP
Sbjct: 5 YLHFTMEDNPTLSENKKQQYKLMYKGAFYERFILGLWVMAEGLVYQIIGDN-FIDEDEIP 63
Query: 131 EHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QTPIFHVAALKSW 184
D+G ++P A + + +Y+++ Y +T + W
Sbjct: 64 VCDYYYISCDYGIYNPMA--WNLIGVLGNEVYIMEEYHHSGRETNETKTDEQYTQDFLEW 121
Query: 185 GKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ + + + S ++G ++ + + +GI + +
Sbjct: 122 KESICNKYGIEVEYTIVDPSASSFIVALEQEGQYVVKANNKVFEEDSERVSGIPLVQIYL 181
Query: 244 RSGRWKV 250
R +
Sbjct: 182 NKLRLFI 188
>gi|33601198|ref|NP_888758.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33602480|ref|NP_890040.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33575633|emb|CAE32711.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33576919|emb|CAE33999.1| putative phage terminase [Bordetella bronchiseptica RB50]
Length = 425
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/269 (16%), Positives = 81/269 (30%), Gaps = 34/269 (12%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--PPED----VYFEGLTRINATQ----GLVTLTLTPL 51
++ E+ D + DE D + + + R+ T V +T TP
Sbjct: 102 RSMEKPGD-IVGFKIGKGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD-------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
G + + ++ V T + E + SYP A +
Sbjct: 161 -GFKFVYQQFVKQVRERPDLVALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLR 219
Query: 105 GEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ L SG ++P + + H GMDF + A +++ + +
Sbjct: 220 GQFTNLTSGSVYPNFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVI---RAGLPLT 276
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPW---AWPHD--GLQHDKRSGEQLSAQYRRQGMKM 218
V TP LK K +P G K + E + R+ G +
Sbjct: 277 VGELTKVRDTPE-MARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTV 335
Query: 219 LPECATFDDGSNGVEAGISDMLDRMRSGR 247
V+ I+ + + +
Sbjct: 336 RVNSRNP-----AVKDRINAVNGMLLNDE 359
>gi|296112059|ref|YP_003622441.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU
11154]
gi|295833591|gb|ADG41472.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU
11154]
Length = 432
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 71/256 (27%), Gaps = 30/256 (11%)
Query: 18 YVWFDEEPPEDVYFE------GLTRINATQGL---VTLTLTPLKGRSPIIEHYLSASSSD 68
++WF+E + E TR +G+ + P + I ++ + S D
Sbjct: 125 WLWFEEATEFSNFTEIHTVQLSYTRQKLPKGMQVVTIFSYNPPRNPYDWINEWVESVSDD 184
Query: 69 RQV--IRMTINE--TPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ T + +EQ I + GEP+ ++ +
Sbjct: 185 ADFLVVHTTYLDDELHFLSEQYLHDIEKYKHNDYDYYRWQFLGEPVGLGTNVYKMDLFQR 244
Query: 123 VINSLDIPEH-WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPI 175
+ + D+ + D G A + ++ + + P
Sbjct: 245 LEHLEDLNDSVVDLYFSADVGHSVSATAVGCYGVTYHRKVVLIDMWYYSPEGKVDKMAPD 304
Query: 176 FHVAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
+ + + + + + D + ++ G+ P
Sbjct: 305 DLSKNIHDFIEKMYAKYGKPISNMTMDSAEASLRNQYHKDYGVDWHPVAKLKKP------ 358
Query: 234 AGISDMLDRMRSGRWK 249
I + + + GR+
Sbjct: 359 DMIDRVQNLLAQGRFY 374
>gi|325849110|ref|ZP_08170602.1| phage terminase, large subunit, PBSX family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480355|gb|EGC83418.1| phage terminase, large subunit, PBSX family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 439
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 80/261 (30%), Gaps = 19/261 (7%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINA-TQGLVTLTLTPLKGRSPIIEHYLS 63
K + N+ E +D E R A + L P I ++
Sbjct: 126 SYKKIRGNSFGMWIATEINLHHKDSIKEAFNRTAAAKRRKFFWDLNPSSPNHFIYSDHID 185
Query: 64 ASSS---------DRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSG 112
+ TI++ + ++Q +K I Y + + G ++ G
Sbjct: 186 KYQNMIDEGIDFGGYNYKHFTIDDNINISDQRKKEIKLQYDPNSVWYKRDILGLRVVAEG 245
Query: 113 RIFPIVEEDIVINSLDIPEH--WVQIGGMDFGWHHP-FAAGHLVWNRDSDVIYVVKNYRC 169
I+ + + H + G+DFG ++ A +R +Y +++ R
Sbjct: 246 LIYKQFADIPDNYLIKEKPHELQLIQIGVDFGGNNSKHAFICTGISRGFKKVYALRSERL 305
Query: 170 REQTPIFHVAALKSWGKWLPWAWPH-DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
P L + + + + + D + D L ++ + +
Sbjct: 306 EPDKPTDLYNQLIDFVRIIQSTYGNVDLIYADSAEQV-LIKGMQKALIDANLNIKIKNSI 364
Query: 229 SNGVEAGISDMLDRMRSGRWK 249
N + I + + S R+
Sbjct: 365 KNPINDRIRLVNTLVASDRFF 385
>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
5631]
Length = 435
Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/256 (9%), Positives = 64/256 (25%), Gaps = 25/256 (9%)
Query: 8 RDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY---L 62
+ + + H + DE P+DV + + A + + G++ + Y
Sbjct: 129 PEFLRGHKAHRIILDEAAFIPDDVISNIIEPMLADYNGSWIKIGTPFGKNHFYDTYLKGQ 188
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIFPIVEE 120
S D R PH + + ++ Y + E + +F +
Sbjct: 189 SPDFPDYSSYRFPSTVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVEDQNAVFRWADI 248
Query: 121 DIVINSLDIPEHWVQIGGMDF-------GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+++ + + + L + + + R
Sbjct: 249 QKNVDNSIELIDSAENVSKQYVIGCDLAKYQDYTVIVVLDVTEKPYKLVHFERFNRR--- 305
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
+ + + L G+ + + G +
Sbjct: 306 --PYAEVIMRLKELYRRFNYAKVLIDSTGVGDPVLEDLQDVGAEGYVFT------PKSKV 357
Query: 234 AGISDMLDRMRSGRWK 249
I + + +G +
Sbjct: 358 QLIQRLQAALENGEIR 373
>gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 452
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDVLIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIF 115
+ + P++ ++ + + +GEP+ S ++
Sbjct: 176 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDKVI 219
>gi|66046030|ref|YP_235871.1| hypothetical protein Psyr_2794 [Pseudomonas syringae pv. syringae
B728a]
gi|63256737|gb|AAY37833.1| Protein of unknown function DUF264 [Pseudomonas syringae pv.
syringae B728a]
Length = 433
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 80/271 (29%), Gaps = 38/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRIN----ATQGLVTLTLTPL 51
++ E+ V + DE + + + + R+ + V +T TP
Sbjct: 102 RSMEK-PQTIVGFKVGHALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + ++ +I+ + + + + +++SYP A
Sbjct: 161 -GFKFVFLQFVKQLRDKPALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQLIRAYLN 219
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + GMDF A RD +
Sbjct: 220 GQFVNLTSGSIYHAYDRKLNQCFDTVQAGEPLFIGMDFNVGKMAAIT--HVKRDKGLPRA 277
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQH--DKRSGEQL---------SAQYR 212
V + TP + + + + SG+ A +
Sbjct: 278 VDEFMDGYDTPDMIRRIKERYWRHDGDKYIKSCEIRVYPDASGDSRKSVNASVTDIAMLK 337
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G ++ A V+ I+ M
Sbjct: 338 QAGFTVIAPAANPP-----VKDRINAMNAMF 363
>gi|170676278|ref|YP_001742039.1| large terminase subunit [Salmonella phage E1]
gi|170321588|emb|CAM33107.1| phage large terminase subunit [Salmonella phage Vi II-E1]
Length = 474
Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 74/258 (28%), Gaps = 27/258 (10%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPI 57
+ + + + V+ +E + + + A + + P K P
Sbjct: 158 FRGLWRNITAIKGMAGLTDVFCEESENISQVSWDTLIPTVRAAGSEIIIVFNPNKETDPT 217
Query: 58 IEHYLS----------ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
+++ D V+ + P + E+ ++ + + E
Sbjct: 218 WTNFVEPYINKMVDGIYQDDDIVVVNVNYVHNPWFTEELKQHMNQMKTVDYDRYLWVYEG 277
Query: 108 ILGSGRIFPIVEEDIVINSLDIPEHWV-QIGGMDFGWH-HPFAAGHLVWNR---DSDVIY 162
+ I++ ++ W GMDFG+ P A + IY
Sbjct: 278 KFNKRSDEQVFGGKWRIDNFEVKPEWHGPYFGMDFGFSTDPTAMVEVYIEELPGGRRNIY 337
Query: 163 VVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPEC 222
+ + Y AA++ + D E +S +R G + P
Sbjct: 338 INREYGKVGLEITDTPAAMEQSFQ----MAKRARWYADCARPETIS-HIKRSGFDIHPC- 391
Query: 223 ATFDDGSNGVEAGISDML 240
VE G++ +
Sbjct: 392 ---TKWPGSVEDGVTWLR 406
>gi|188025504|ref|ZP_02997527.1| hypothetical protein PROSTU_00661 [Providencia stuartii ATCC 25827]
gi|188023287|gb|EDU61327.1| hypothetical protein PROSTU_00661 [Providencia stuartii ATCC 25827]
Length = 285
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 7/155 (4%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE E + + + + +T P K S + + + V+ M
Sbjct: 126 IAWVDEAESVSETAWTKLTPTVREAGSEIWVTWNPEKDGSATDKRFRKKQPDNAIVVEMN 185
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
++ P + E+ER +G + S + + + D+ +
Sbjct: 186 YDDNPWFPSVLEEERLNDQARLDAATYAWIWEGAYLENSDKQVLANKYVVQSFPDDLWKK 245
Query: 133 WVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ + G DFG+ ++ D D +Y+ +
Sbjct: 246 ADRLLFGADFGFAKDLNTLIRMFILD-DCLYIERE 279
>gi|260463792|ref|ZP_05811989.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259030389|gb|EEW31668.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 131
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 64/95 (67%)
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLD 128
R V MTI++ HY+ ER I+ +YP HEREAR +G P+LGSGRIFP+ E I
Sbjct: 3 RHVTFMTIDDAAHYSPDERAAIVAAYPAHEREARARGIPVLGSGRIFPVAEALIACEPFR 62
Query: 129 IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
+P +W ++G +DFGW HP AA L W+ ++DV+YV
Sbjct: 63 LPRYWPRLGALDFGWDHPSAAVELAWDTEADVVYV 97
>gi|253999341|ref|YP_003051404.1| hypothetical protein Msip34_1632 [Methylovorus sp. SIP3-4]
gi|253986020|gb|ACT50877.1| protein of unknown function DUF264 [Methylovorus sp. SIP3-4]
Length = 428
Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/271 (12%), Positives = 81/271 (29%), Gaps = 37/271 (13%)
Query: 7 GRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRINAT----QGLVTLTLTPLKGRSP 56
+ + DE + + + + R+ Q V +T TP G
Sbjct: 107 DPSQIVGFKIGKALIDELDILAKEKAQLAWRKIIARMRYKVDNLQNGVGVTTTPE-GFKF 165
Query: 57 IIEHYLSASSSD-------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI- 108
+ + ++ + T + + E + SYP EA +G+ +
Sbjct: 166 VYDQFVKQVREKPELASLYGLIHASTYDNAKNLPEDYIPSLRASYPPQLIEAYLRGKFVN 225
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
L SG ++ + + GMDF + A +++ + + V
Sbjct: 226 LNSGSVYANFDRKKNHTDAVMKPGEALHIGMDFNVMNMTATINVMRD---GLPLQVAELT 282
Query: 169 CREQTPIFHVAALKSW---GKWLPWAWPHDGLQHDKR--SGEQLSAQYRRQGMKMLPECA 223
TP + + +P ++ + E RR+ ++ +
Sbjct: 283 GVRDTPT-MAQIIHDRYRGNHNVIQIYPDASGKNTSSKNASESDLTILRRKEFSIMVNDS 341
Query: 224 TFDDGSNGVEAGISDMLDRMRSG----RWKV 250
V+ ++ + + R+++
Sbjct: 342 NP-----AVKDRVNAYHAMILNDKGERRFRI 367
>gi|330977766|gb|EGH77669.1| hypothetical protein PSYAP_13460 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 384
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 38/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRIN----ATQGLVTLTLTPL 51
++ E+ V + DE + + + + R+ + V +T TP
Sbjct: 102 RSMEK-PQTIVGFKVGHALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + ++ +I+ + + + + +++SYP A
Sbjct: 161 -GFKFVFLQFVKQLRDKPALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQLIRAYLN 219
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + GMDF A R+ +
Sbjct: 220 GQFVNLTSGSIYHAYDRKLNQCFDTVQAGEPLFIGMDFNVGKMAAIT--HVKREKGLPRA 277
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD--KRSGEQL---------SAQYR 212
V + TP + + + + SG+ A +
Sbjct: 278 VDEFMDGYDTPDMIRRIKERYWRHDGDKYIKSCEIRIYPDASGDSRKSVNASVTDIAMLK 337
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G ++ A V+ I+ M
Sbjct: 338 QAGFTVIAPAANPP-----VKDRINAMNAMF 363
>gi|153853398|ref|ZP_01994807.1| hypothetical protein DORLON_00796 [Dorea longicatena DSM 13814]
gi|149754184|gb|EDM64115.1| hypothetical protein DORLON_00796 [Dorea longicatena DSM 13814]
Length = 390
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/253 (12%), Positives = 60/253 (23%), Gaps = 26/253 (10%)
Query: 16 VHYVWFDEEPPE----------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL--S 63
+ V DE R N + + P K + I +
Sbjct: 54 IKLVVLDELTEFFDDGEGEDELSNIEATFVRGNDSDFQMIYLYNPPKNPNAPINQWCKKM 113
Query: 64 ASSSDRQVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE 119
D I + P E G+ + I+ +
Sbjct: 114 EKRDDCIHIHTDYRDVPVSWLGHALIASAEAMKRADEKMYRWVWLGQAVGVDELIYYMFG 173
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE------QT 173
+ + G D+G + ++ + Y ++
Sbjct: 174 DRHRKKPDPDRRYDRIYIGGDYGQQNATTFEAFGFDAYRKKFPGLGEYYHSGRETGKQKS 233
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATF--DDGSN 230
P + L + L + + S + L+ + RR + D N
Sbjct: 234 PSEYAKDLVEFMNDLHEQYDNRVFYIFLDPSAKGLAEEVRRA-TRAENLDYQVFLRDAEN 292
Query: 231 GVEAGISDMLDRM 243
V GIS + +
Sbjct: 293 DVALGISRVQKVL 305
>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 456
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 6/111 (5%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ P + ++
Sbjct: 107 KSLEG--IDIAWVEEAEAVTKESWDILIPTIRKPGSEIWVSFNPKNILDDTYQRFVVNPL 164
Query: 67 SDRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIF 115
D ++ + + PH+ E R + +GEP+ S
Sbjct: 165 DDICLLTVHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAI 215
>gi|168214628|ref|ZP_02640253.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens CPE str. F4969]
gi|170713912|gb|EDT26094.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens CPE str. F4969]
Length = 443
Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 80/263 (30%), Gaps = 20/263 (7%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPIIEHYLS 63
K + N+ E D E R A + V L P + I + Y+
Sbjct: 125 SYKKIRGNSYGMWIATEINLHHPDSIKEAFNRTIAAQKRKVFWDLNPDNPNAFIYKDYID 184
Query: 64 ASSS---------DRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSG 112
+ TI++ + +++ ++ I Y + G+ + G
Sbjct: 185 NYKNKYDVGTLIGGYNYYHFTIDDNINISDERKEEIKSQYDKTSIWYQRDILGKRCVAEG 244
Query: 113 RIFPIV---EEDIVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVV--KN 166
I+ + +I + DI G+DFG + A + + ++ +
Sbjct: 245 LIYRRFANNPKKFIIENKDISNLMKISIGVDFGGNGSGHAFIATGITFGFEKVIILSSER 304
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + P + K + + + + + + L + +K + D
Sbjct: 305 HFGDDIDPERLGEIFVDFVKKINHKYGFAEVAYCDSAEQVLIRGLKNAAIKEGLDIRVTD 364
Query: 227 DGSNGVEAGISDMLDRMRSGRWK 249
+ V I+ M R +
Sbjct: 365 AWKSTVNDRINATTKLMAQDRLQ 387
>gi|238765410|ref|ZP_04626332.1| hypothetical protein ykris0001_46080 [Yersinia kristensenii ATCC
33638]
gi|238696351|gb|EEP89146.1| hypothetical protein ykris0001_46080 [Yersinia kristensenii ATCC
33638]
Length = 381
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/172 (9%), Positives = 41/172 (23%), Gaps = 16/172 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL- 51
+ + + H V DE E+++ + +G + TP
Sbjct: 51 FWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGRAWVFSTPNG 110
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
S S + P + E + + E
Sbjct: 111 IDESNFFYAICHDESLGFVKHHAPTSSNPFIPKDELEETERKSDPRVWQQEYLAEFVDWS 170
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVWNR 156
+ I + + + +P+H + + + + + R
Sbjct: 171 KDALLDIDKLLVDGQPVGVPKHCDVVFAVMDTALKGGTENDGTGVVYFAYER 222
>gi|266623782|ref|ZP_06116717.1| terminase, large subunit [Clostridium hathewayi DSM 13479]
gi|288864419|gb|EFC96717.1| terminase, large subunit [Clostridium hathewayi DSM 13479]
Length = 440
Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 13/180 (7%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +W +E + + R + + P K S Y+ +
Sbjct: 263 YIGILWLEELDQFVGPESVRKIEQSVIR-GGEVAYIFKSFNPPKTASNWANKYIKVPKAS 321
Query: 69 RQVIRMTINETPHY----NEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
R V T + P + + + G GSG I
Sbjct: 322 RLVTESTYLDVPPKWLGKPFLDEAEFLKEVNPDAYDNEYMGV-ANGSGGSVFDNVTIRKI 380
Query: 125 NSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+I + + G+D+GW+ +A + ++ +Y+ + Y C +Q+ L
Sbjct: 381 TDEEIAQFDHVLNGVDWGWYPDLYAFVRVHYDPARLRLYIWQEYTCNKQSNRKTADKLIE 440
>gi|85059367|ref|YP_455069.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779887|dbj|BAE74664.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 264
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 11/111 (9%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + W +E ++ + + I + ++ + ++
Sbjct: 108 KSLEG--IDIAWVEEAEAVTKESWDILIPTIRKPGSEIWVSFNSKNILDDTYQRFVVNPP 165
Query: 67 SDRQVIRMTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIF 115
D ++ + + PH+ E R + +G+P+ S
Sbjct: 166 DDICLLTVHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGQPVADSDLAI 216
>gi|258508120|ref|YP_003170871.1| phage-related terminase large subunit [Lactobacillus rhamnosus GG]
gi|257148047|emb|CAR87020.1| Phage-related terminase, large subunit [Lactobacillus rhamnosus GG]
Length = 453
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 72/254 (28%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHYLS--ASSS 67
VW++E +V+ + R + Q V T P K I ++
Sbjct: 135 VWYEEAANFKSAEVFDQTNPTFIRQKSPWVDQVQVFYTYNPPKNPYDWINEWIDSVRGDP 194
Query: 68 DRQVIRMTI--NETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + T ++ +EQ+ K + G+ I ++ + +
Sbjct: 195 DFFIDTSTYLDDDLGFTDEQQLKLIDKYKANDYDYYRWLYLGDVIGLGTNVYNMDLFHRL 254
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPIFH 177
+ +D G + + + V+ Y ++ P
Sbjct: 255 DEVPSNDPIRRLVFSIDAGHINSATTCVAAAVTAKNNLIVLDTYYYSPANQSVKKAPSDL 314
Query: 178 VAALKSWGKWLPWAWPHDG--LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
V +KS+ + + H D G + + G++ G
Sbjct: 315 VPEIKSFIDKVRSKYNHPVLKYTIDSAEGALRNEFVKEFGIRW----HGIVKGKEA--DM 368
Query: 236 ISDMLDRMRSGRWK 249
I + + + GR
Sbjct: 369 IDFVSNLLAQGRVF 382
>gi|296160121|ref|ZP_06842940.1| phage terminase, large subunit, PBSX family [Burkholderia sp.
Ch1-1]
gi|295889595|gb|EFG69394.1| phage terminase, large subunit, PBSX family [Burkholderia sp.
Ch1-1]
Length = 494
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 67/278 (24%), Gaps = 45/278 (16%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPI 57
+ + + + T W DE D + + I V +T P K P
Sbjct: 150 FRGLYRNQRGIKGFTKASKAWVDEADGVSRDSWEILMPTIREKGSEVWVTFNPNKAHDPT 209
Query: 58 I-----------EHYLSASSSDRQVIRMTINETPHYNE--QERKRIIDSYPLHEREARTK 104
+ D +IR + P + E + + ++
Sbjct: 210 WTDLIGPYEHLLDDGGCYEDDDVLIIRANYTDNPWFTEELELERAKMERVDKDRYNWIWL 269
Query: 105 GEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWN-------- 155
G+ S + I + + P + G D+G+ P
Sbjct: 270 GQFNKRSNEL--IFAGKWRTEAFETPANVRFFFGADWGFAQDPTTLNRSFVKGNTLFVDY 327
Query: 156 ------RDSDVIYVVKNYRC-----REQTPIFHVAALKSWGKWLPWAWPHDGL--QHDKR 202
+++ + P P + D
Sbjct: 328 EANSLRQNAGKGVDLDELWKLFAGSEGMRPAQRQQWKAEDALKYPGVPGARKWKIKADCA 387
Query: 203 SGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
E +S ++ G + VE GI+ +
Sbjct: 388 RPETISLVAKQ-GFNIDAA----KKWGGSVEDGITFLR 420
>gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
Length = 452
Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 10/104 (9%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 16 VHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ VW +E ++ + + I + ++ P + ++ + +
Sbjct: 116 IDVVWVEEGENVSKESWDVLIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVL 175
Query: 74 MTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIF 115
+ + P++ ++ + ++ +GEP+ S ++
Sbjct: 176 VNWQDNPYFPKELMEDMVQMRERDYELYRHVYEGEPVADSDKVI 219
>gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
Length = 424
Score = 62.5 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 62/237 (26%), Gaps = 22/237 (9%)
Query: 6 QGRDKWQSNTVHYVWFDE--EPP---EDVYFEGLTRI-NATQGLVTLTLTP-LKGRSPII 58
Q D +S V DE P ++ + + +G + TP
Sbjct: 104 QDEDAGRSRFYDRVIIDEGSLVPKGLRSIWEQAIAPTLLDRKGHAIMAGTPKGIDPENFF 163
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPI 117
+ + + P + + R+ D YP + + F
Sbjct: 164 YEACTDKTLGWREFHAPTASNPMLDPEAVARLKDEYPALVYQQEYLADFVDWNGAAFFSE 223
Query: 118 VEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVWNRDSDVIYVV---KNYR 168
+ +D P Q+ + D H A + N + + +
Sbjct: 224 ESLLVDGEPVDYPTRCDQVFAVVDTALKDGLEHDGTAVTYFARNVITGTPLTILDWDVLQ 283
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPH-----DGLQHDKRSGEQLSAQYRRQGMKMLP 220
+ + + L G DK SG L Q +R+ + P
Sbjct: 284 IEGALLESWLPTVAQRCEELAAQVGARQGSLGGWIEDKASGIVLLQQAKRRSLPFHP 340
>gi|195942579|ref|ZP_03087961.1| hypothetical protein Bbur8_07059 [Borrelia burgdorferi 80a]
Length = 450
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYKFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTIIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|259649436|dbj|BAI41598.1| phage terminase large subunit [Lactobacillus rhamnosus GG]
Length = 446
Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 72/254 (28%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHYLS--ASSS 67
VW++E +V+ + R + Q V T P K I ++
Sbjct: 128 VWYEEAANFKSAEVFDQTNPTFIRQKSPWVDQVQVFYTYNPPKNPYDWINEWIDSVRGDP 187
Query: 68 DRQVIRMTI--NETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + T ++ +EQ+ K + G+ I ++ + +
Sbjct: 188 DFFIDTSTYLDDDLGFTDEQQLKLIDKYKANDYDYYRWLYLGDVIGLGTNVYNMDLFHRL 247
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPIFH 177
+ +D G + + + V+ Y ++ P
Sbjct: 248 DEVPSNDPIRRLVFSIDAGHINSATTCVAAAVTAKNNLIVLDTYYYSPANQSVKKAPSDL 307
Query: 178 VAALKSWGKWLPWAWPHDG--LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
V +KS+ + + H D G + + G++ G
Sbjct: 308 VPEIKSFIDKVRSKYNHPVLKYTIDSAEGALRNEFVKEFGIRW----HGIVKGKEA--DM 361
Query: 236 ISDMLDRMRSGRWK 249
I + + + GR
Sbjct: 362 IDFVSNLLAQGRVF 375
>gi|11497347|ref|NP_051454.1| hypothetical protein BBN43 [Borrelia burgdorferi B31]
gi|6382368|gb|AAF07680.1|AE001581_22 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ ++ T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKIYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI---FTQ 268
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + + A + R D Y R + +
Sbjct: 269 INITDDYIFTSPIAYLDPAFSVGGDNTALCVM--ERVDDKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITM 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|297620908|ref|YP_003709045.1| hypothetical protein wcw_0671 [Waddlia chondrophila WSU 86-1044]
gi|297376209|gb|ADI38039.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 499
Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 9/163 (5%)
Query: 83 NEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG 142
+E + + + +P EA L GR + I ++ + D G
Sbjct: 268 SETQGEDMKREFPSTPEEAFEVSNEGLYYGRQIVEARQHGRIRNVYYDANVPVHTAWDLG 327
Query: 143 WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL-PWAWPHDGLQHDK 201
++ A + I++++ Y + ++ +KS PHD H+
Sbjct: 328 YNDSTAIWW--YQVCGQEIHLLEYYENSGEPLTHYLQIVKSKPYVYGKHIVPHDAAVHEY 385
Query: 202 RSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMR 244
+G R G+ + GI + +
Sbjct: 386 STGLSRVEVARNHGVSFTIAP------KIDLIEGIDAVRNIFN 422
>gi|315168841|gb|EFU12858.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX1341]
Length = 429
Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P +E S R + T ++ P
Sbjct: 134 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGRFLFRHWTPDDNPI 193
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E ++++ D E E G +L G I+ + ++ +
Sbjct: 194 LSESRKQQLYDELSSSEYLLERDWYGHRVLPQGVIYSMFGKNNKATEIKGNIIETFFTA- 252
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V Y+ + Y + +K + +W
Sbjct: 253 DGGQADATTCAFWVVTFYDGKFYLYRLANYYHSGTDTGETKAMSIYAKEIKRFVEWCYTK 312
Query: 192 WPHDGLQHD---KRSGEQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + + + L ++ G+ D + +E GI + + M
Sbjct: 313 WNHLPHWNYFFVDPACKTLRSELDLIGIITDKADNNSSDKVSSNGLKIEVGIERLQNTMI 372
Query: 245 SGRWKV 250
SG++ V
Sbjct: 373 SGQFIV 378
>gi|224020497|ref|YP_002601287.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929730|gb|ACN24438.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 NN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI---FTQ 268
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + + A + R D Y R + +
Sbjct: 269 INITDDYIFTSPIAYLDPAFSVGGDNTALCVM--ERVDDKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITM 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|225575989|ref|YP_002724899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|225546587|gb|ACN92590.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
S + T + ++ + Y +AR GE I + I +
Sbjct: 213 DNIS-TFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D YV R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYVFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|197261559|ref|YP_002154374.1| terminase large subunit [Bacillus phage IEBH]
gi|197092431|gb|ACH42306.1| terminase large subunit [Bacillus phage IEBH]
Length = 432
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/256 (12%), Positives = 71/256 (27%), Gaps = 32/256 (12%)
Query: 19 VWFDEEPPE------DVYFEGLTR--INATQGLVTLTLTPLK----GRSPIIEHYLSASS 66
+WF+E D+ + R I + V + P + + ++ A
Sbjct: 129 LWFEEAAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLD--SKAGD 186
Query: 67 SDRQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
D + T + ++Q ++I R + I
Sbjct: 187 EDYFIHHSTYMDDKKGFLSQQMIRKIEKYKIHDLDYWRWMYGGEVIGLGDMVYNMNHIQE 246
Query: 125 NSLDIPEHWVQIGGMDFGWHH---PFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIF 176
+ + + H L + + +VI + Y ++ P
Sbjct: 247 IDELPHDDDIILIDTASDTGHQVSATTHLSLAFTKKRNVILLDTYYYSPANKVVKKAPSE 306
Query: 177 HVAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
K W + + D D G + ++ G+++ P
Sbjct: 307 LSKDFKEWQDSIIKMYNRYFDKQTIDSAEGALRNQVFKDYGIRLHP------IAKKKKID 360
Query: 235 GISDMLDRMRSGRWKV 250
I ++ D + GR+ V
Sbjct: 361 MIDNVQDLLAQGRFFV 376
>gi|312148837|gb|ADQ31485.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + + +
Sbjct: 386 LITPLTYKKLYI 397
>gi|302186554|ref|ZP_07263227.1| hypothetical protein Psyrps6_09413 [Pseudomonas syringae pv.
syringae 642]
Length = 433
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 38/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP------PEDVYFEGLTRIN----ATQGLVTLTLTPL 51
++ E+ V + DE + + + + R+ + V +T TP
Sbjct: 102 RSMEK-PQTIVGFKVGHALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + ++ +I+ + + + + +++SYP A
Sbjct: 161 -GFKFVFLQFVKQMRDKPALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQLIRAYLN 219
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + GMDF A R+ +
Sbjct: 220 GQFVNLTSGSIYHAYDRKLNQCFDTVQAGEPLFIGMDFNVGKMAAIT--HVKREKGLPRA 277
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQH--DKRSGEQL---------SAQYR 212
V + TP + + + + SG+ A +
Sbjct: 278 VDEFMDGYDTPDMIRRIKERYWRHDGDKYIKTCEVRVYPDASGDSRKSVNASVTDIAMLK 337
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G ++ A V+ I+ M
Sbjct: 338 QAGFTVIAPAANPP-----VKDRINAMNAMF 363
>gi|87307615|ref|ZP_01089759.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
3645]
gi|87289785|gb|EAQ81675.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
3645]
Length = 429
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 44/168 (26%), Gaps = 12/168 (7%)
Query: 10 KWQSNTVHYVWFDEEPPE--DVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLSASS 66
+ + + DE +V+ + L ++ +G TP +H L
Sbjct: 134 SLRGEGLDGMIGDEFAFVRKEVWSDALRPALSDRRGWSMFLTTPNGPNWMKDQHDLDGVD 193
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF---PIVEEDIV 123
+ + ++ ++ E + + + + + SG F
Sbjct: 194 PTYKSWQCPTSDNCLIDQAELDSALLDLGQASFDQEYRAQFVDVSGAEFSGLYFQTPKFW 253
Query: 124 INSLDIPEHWV-QIGGMDFG-----WHHPFAAGHLVWNRDSDVIYVVK 165
+ ++ G+D A L D +
Sbjct: 254 FDDWPPESEIRFRVIGLDPSKGKNDKSDYSAFVMLALAGDGQIYVDAD 301
>gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus
Caldiarchaeum subterraneum]
Length = 439
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 14/214 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + V+ DE ++ + A G VTL TP R E +
Sbjct: 127 NPESLRGYRADAVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPKGKRGWFHEAWT 186
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE--E 120
+ ++ + + ++PH + + + + E E + P + E
Sbjct: 187 TDNT--WSKHLVKLGDSPHITMHDLEELRKTMSPLEWRQEMMCEFLDEVNAFIPYEKILE 244
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ G+DFG D + V R++ + A
Sbjct: 245 CVEDYVPARVVGGRVYVGVDFGRFRDSTVII-AVVEDGERFRVCYVEELRQKPFAAQLEA 303
Query: 181 L-KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213
+ ++ P D G L+ +
Sbjct: 304 INRANMVLHPAIVAVDS----TGMGAPLAETLAK 333
>gi|219723105|ref|YP_002474527.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694031|gb|ACL34563.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 450
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 16/238 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCAQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
++ + T + +++ K Y +AR GE I + I +
Sbjct: 213 DNVATFNTY-KFTTYDNVLLSKEFIKTQEKLYKDIPAYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + A + +R D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDN-TALCVM--DRVDDKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGKWLPWA--WPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ + + D K +G G
Sbjct: 327 VKTVLENFNVNTLYLEDRDN-TKGAGALTREYMTLRNNMGHYFRIVPIKPKSNKFSRI 383
>gi|11497152|ref|NP_051291.1| hypothetical protein BB_R45 [Borrelia burgdorferi B31]
gi|6382173|gb|AAF07489.1|AE001577_3 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 VITPFTYKKLYI 397
>gi|224020463|ref|YP_002601168.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929158|gb|ACN23879.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|150007526|ref|YP_001302269.1| putative phage large subunit terminase [Parabacteroides distasonis
ATCC 8503]
gi|149935950|gb|ABR42647.1| putative phage large subunit terminase [Parabacteroides distasonis
ATCC 8503]
Length = 422
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 36/230 (15%)
Query: 30 YFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASS---------------SDRQVI 72
+ + + I + + + P I + Y+ + + I
Sbjct: 141 FDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIENTHKLVEIDGVQVQISTHPNVLHI 200
Query: 73 RMTINET-PHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
T + + + + K + D + + + ++ +++
Sbjct: 201 HTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWADVAEGAVFKKWGIVDEFPAWA 260
Query: 132 HWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
G DFG+ P A+ + +Y+ + + +L+ WG
Sbjct: 261 -KKVAIGQDFGYTHDPSASIRCGI--VDNALYLDEIDYRTGLLSSDIIKSLRPWGLK--- 314
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ +L + G+K+ + G+ V AG+ M
Sbjct: 315 -------VIADSADPRLIQEIHNGGVKI----YAVEKGAGSVNAGLDKMQ 353
>gi|255972605|ref|ZP_05423191.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|256762688|ref|ZP_05503268.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|257422423|ref|ZP_05599413.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|255963623|gb|EET96099.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|256683939|gb|EEU23634.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|257164247|gb|EEU94207.1| conserved hypothetical protein [Enterococcus faecalis X98]
Length = 429
Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/246 (15%), Positives = 75/246 (30%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P +E S R + T ++ P
Sbjct: 134 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGRFLFRHWTPDDNPI 193
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E ++++ D E E G +L G I+ + ++ +
Sbjct: 194 LSESRKQQLYDELSSSEYLLERDWYGHRVLPQGVIYSMFGKNNKATEIKGNIIETFFTA- 252
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V + Y+ + Y + +K + +W
Sbjct: 253 DGGQADATTCAFWVVTFYAGKFYLYRLANYYHSGTDTGETKAMSIYAKEIKQFVEWCYTK 312
Query: 192 WPHDGLQHD---KRSGEQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + + + L ++ G+ D + +E GI + + M
Sbjct: 313 WNHLPHWNYFFVDPACKTLRSELDLIGIITDKADNNSSDKVSSNGLKIEVGIERLQNTMI 372
Query: 245 SGRWKV 250
SG++ V
Sbjct: 373 SGQFIV 378
>gi|219723069|ref|YP_002474484.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219693000|gb|ACL34209.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312147710|gb|ADQ30370.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 NN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNI 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITA 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|315144258|gb|EFT88274.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2141]
Length = 429
Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/246 (15%), Positives = 75/246 (30%), Gaps = 20/246 (8%)
Query: 24 EPPEDVYFEGLTRINATQGLVTLTL-TPLKGRSPIIEHYLSASSSDRQVI-RMTINETPH 81
+D E R A + L P P +E S R + T ++ P
Sbjct: 134 LLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGRFLFRHWTPDDNPI 193
Query: 82 YNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGM 139
+E ++++ D E E G +L G I+ + ++ +
Sbjct: 194 LSESRKQQLYDELSSSEYLLERDWYGHRVLPQGVIYSMFGKNNKATEIKGNIIETFFTA- 252
Query: 140 DFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTP------IFHVAALKSWGKWLPWA 191
D G V + Y+ + Y + +K + +W
Sbjct: 253 DGGQADATTCAFWVVTFYAGKFYLYRLANYYHSGTDTGETKAMSIYAKEIKQFVEWCYTK 312
Query: 192 WPHDGLQHD---KRSGEQLSAQYRRQGMKMLPECATFDDGSNG----VEAGISDMLDRMR 244
W H + + + L ++ G+ D + +E GI + + M
Sbjct: 313 WNHLPHWNYFFVDPACKTLRSELDLIGIITDKADNNSSDKVSSNGLKIEVGIERLQNTMI 372
Query: 245 SGRWKV 250
SG++ V
Sbjct: 373 SGQFIV 378
>gi|226246889|ref|YP_002776229.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226202275|gb|ACO37943.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI---FTQ 268
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + + A + R D Y R + +
Sbjct: 269 INITDDYIFTSPIAYLDPAFSVGGDNTALCVM--ERVDDKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|225576422|ref|YP_002725451.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|225547005|gb|ACN92996.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKHYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224535095|ref|ZP_03675642.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224513629|gb|EEF83976.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/234 (10%), Positives = 65/234 (27%), Gaps = 18/234 (7%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLKEALKRLRRGQETIIFDTNPDHPEHFFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + +++ K Y +AR GE + + I +
Sbjct: 213 DN-VATFKTYNFTTYDNVFLSKEFIKTQEKLYKDIPTYKARVLLGEWVSSTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + + G + + D Y R + +
Sbjct: 270 NITQDYVFVSPIAYLDPAFSIGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQY-----RRQGMKMLPECATFDD 227
+K+ + + + D K +G +++P +
Sbjct: 327 VKTVLENFNVHTFYLEDRDN-TKGAGALTREYMTLRNNMSHNFRIIPVKPKSNK 379
>gi|190151448|ref|YP_001974359.1| putative large subunit of phage terminase [Streptococcus phage
PH15]
gi|190014442|emb|CAQ57828.1| hypothetical protein [Streptococcus phage PH15]
Length = 435
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 63/255 (24%), Gaps = 30/255 (11%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQGLV---TLTLTPLKGRSPIIEHYLS--ASSS 67
VW++E + + + R + P + I +
Sbjct: 129 VWYEEAAEFSNQEDFDQTNVTFMRQKHPDVPFVKFFWSYNPPRNPYSWINEWWDSLKERE 188
Query: 68 DRQVIRMTINE--TPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + + + + EQ I GEP+ ++ + V
Sbjct: 189 DYLLHKSSYLDDELGFVTEQMLADIERIKENDYDYYRYIYLGEPVGLGTNVYNMDLFHRV 248
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPIFH 177
D Q+ D G + +Y+V NY ++ P
Sbjct: 249 DKIPDNERVIGQLFAADTGHQQSATTCLHAVVTNKRKLYLVDNYYYSPAGKTHKKAPSVL 308
Query: 178 VAALKSWG---KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
L + L P + D G + G++ P V
Sbjct: 309 SKELHEFVTSQTKLFVNVPVVEMTIDSAEGALRNQYLEDFGIRWHP----VAKKKKIVMT 364
Query: 235 GISDMLDRMRSGRWK 249
+ + GR+
Sbjct: 365 --EYVQSLLADGRFY 377
>gi|225575978|ref|YP_002724813.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225576296|ref|YP_002725339.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547342|gb|ACN93326.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547454|gb|ACN93434.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 64/232 (27%), Gaps = 12/232 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
++ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 DNTA-TFKTYKFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I+ + + G + + D Y R + +
Sbjct: 270 NIIQDYVFTSPIAYLDPAFSIGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+K+ + + + D G R M A SN
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYIMLRSNMSQYFRIAPVKPKSN 378
>gi|288924494|ref|ZP_06418458.1| hypothetical protein FrEUN1fDRAFT_8156 [Frankia sp. EUN1f]
gi|288344160|gb|EFC78725.1| hypothetical protein FrEUN1fDRAFT_8156 [Frankia sp. EUN1f]
Length = 229
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 20/165 (12%)
Query: 98 EREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRD 157
+ G+ ++ G I+ + +ED + G+D+G +PF+ L D
Sbjct: 7 WYKRFILGQWVMAEGAIYDMWDEDTHLVDRLPSIERWLALGVDYGTVNPFSGLLLGLGND 66
Query: 158 SDVIYVVKNYR------CREQTPIFHVAALKSW------GKWLPWAWPHDGLQHDKRSGE 205
+Y+ +R R T + ++ W G P + D S
Sbjct: 67 -RRLYLTHEWRWDSKLERRSLTDSQYSTRVREWLTALDLGMNAPARVDPEWFIVD-PSAA 124
Query: 206 QLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
Q G+ A G N V +GI + + + R +V
Sbjct: 125 SFKTQLFSDGV------ANVMGGDNDVVSGIRTVASLLGNDRLRV 163
>gi|219723016|ref|YP_002474442.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692691|gb|ACL33908.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DNMA-TFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224022662|ref|YP_002606275.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224593632|ref|YP_002640950.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|223929246|gb|ACN23964.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224554688|gb|ACN56067.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|219723193|ref|YP_002474612.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|224591572|ref|YP_002640899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|219693035|gb|ACL34243.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|224554907|gb|ACN56281.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224983785|ref|YP_002641105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553986|gb|ACN55383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/232 (11%), Positives = 60/232 (25%), Gaps = 12/232 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+K+ + + + D G R + SN
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSN 378
>gi|28378986|ref|NP_785878.1| prophage Lp2 protein 36 [Lactobacillus plantarum WCFS1]
gi|28271824|emb|CAD64729.1| prophage Lp2 protein 36 [Lactobacillus plantarum WCFS1]
Length = 233
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 14/153 (9%)
Query: 91 IDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLD-IPEHWVQIGGMDFG-WHHPFA 148
+ + G+ + G +F E I N++D I E G+D+G + P A
Sbjct: 15 LYQTNPRRAKTVVDGDWGVAEGLVFEDNIEQIEFNTMDKIQECGQTGFGLDYGFGNDPNA 74
Query: 149 AGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS 208
+ + + ++V QT LK+ G + + +
Sbjct: 75 FVAVAVDVRNKQLWVYDEMYTYHQTTPHVAEWLKANGYERARIYADSA-------NPERT 127
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
AQ G+ +EAGI +
Sbjct: 128 AQLNDLGI-----VNADSVVKTPIEAGIDQLWQ 155
>gi|312147637|gb|ADQ30298.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224590670|ref|YP_002640676.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224553765|gb|ACN55167.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|313611711|gb|EFR86253.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
FSL F2-208]
Length = 466
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 70/258 (27%), Gaps = 29/258 (11%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHY--LS 63
V +WF+E DV + R + G + ++ P + + Y
Sbjct: 158 YVSGLWFEELAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSK 217
Query: 64 ASSSDRQVIRMTINETP----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
S D + T + ++ L GE I ++ +
Sbjct: 218 RSDDDYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNL 277
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQT 173
+ + +D G +VI + Y ++
Sbjct: 278 FHPLKAIPADDRLILIDFAIDTGHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKA 337
Query: 174 PIFHVAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
P + L+ + + + D D G + Y+ G+ + P G
Sbjct: 338 PSEYSKELRDFMTKVVENYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK- 392
Query: 232 VEAGISDMLDRMRSGRWK 249
I + D + GR+
Sbjct: 393 -VDMIDFVCDLLAQGRFY 409
>gi|226246703|ref|YP_002776000.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|226202392|gb|ACO38050.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|225576048|ref|YP_002724855.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|225546646|gb|ACN92649.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|11497124|ref|NP_051248.1| hypothetical protein BB_S45 [Borrelia burgdorferi B31]
gi|223987739|ref|YP_002601211.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|6382145|gb|AAF07462.1|AE001576_21 conserved hypothetical protein [Borrelia burgdorferi B31]
gi|223929452|gb|ACN24166.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|226315871|ref|YP_002776346.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226202080|gb|ACO37753.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|300772208|ref|ZP_07082078.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC
33861]
gi|300760511|gb|EFK57337.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC
33861]
Length = 445
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/273 (13%), Positives = 76/273 (27%), Gaps = 68/273 (24%)
Query: 21 FDEEPPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASS------------ 66
+E ED Y + + I V L + P + + Y+ +
Sbjct: 126 MEEWQSEDDYDKLILSIRKKGIQNRVILIMNPSDDEHFVYKKYIQDTHRVEVIDGVEVQI 185
Query: 67 ---SDRQVIRMTINETPHY--------------------------------NEQERKRII 91
+ I + + +E+ ++
Sbjct: 186 STHPNVLHIHTSYLDNIENVSETFLAEIAEIKRKSEKQAHQAAIAEFPEVHSEEYKRAYH 245
Query: 92 DSYPLHEREARTKGEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH-HPFAA 149
++ + G + G IF EE D E + G D+G+ P
Sbjct: 246 RAFQRTKYAYVVIGRWADIAEGVIFTDWEE------GDFDESLPYLYGQDYGFSIDPTTL 299
Query: 150 GHLVWNRDSDVIYVVKNYR-CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS 208
+ + +YV + + + ++ +P+D + D ++
Sbjct: 300 VKVAVDERRKRVYVQEKFYSKSQLKLQNVYNMNLAYLD-----YPNDLIIGDSAEDRLIA 354
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
G+ + G V+AGI+D+ D
Sbjct: 355 D-LAGLGLNIEECD----KGPGSVKAGIADLQD 382
>gi|11497292|ref|NP_051420.1| hypothetical protein BB_L43 [Borrelia burgdorferi B31]
gi|6382313|gb|AAF07626.1|AE001580_11 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYKFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312147604|gb|ADQ30266.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224983831|ref|YP_002641150.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554243|gb|ACN55633.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYKFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|11497063|ref|NP_051203.1| hypothetical protein BB_P42 [Borrelia burgdorferi B31]
gi|6382084|gb|AAF07402.1|AE001575_3 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYKFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|219723219|ref|YP_002474654.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692798|gb|ACL34012.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312148753|gb|ADQ31404.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITADYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor
hydrothermalis 108]
gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
Length = 444
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/221 (12%), Positives = 66/221 (29%), Gaps = 14/221 (6%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE 59
++ + + V E + VY + + + + V T G + + +
Sbjct: 133 RSTSRNGVYLRGKGADGVAITEAAFIKDKVYHDVIRAMVLDRNGVLRLETTPNGMNYVYK 192
Query: 60 HYLSASSSDR---QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP 116
+ + + T+ + + +E +RI P E + IFP
Sbjct: 193 LFQEGLNDSTGYYKSFHATVYDNERLDREELERIRREIPELAWRIEYLAEFVEDDSFIFP 252
Query: 117 IVEEDIVINSL----DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
V + + G+D + + ++ + + +V+ +R + +
Sbjct: 253 WNLLCEVFDDYELKKEPQNGHRYSIGVDLAKYQDYTVIIVL-DITREPYQIVEYHRYQGR 311
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213
VA + D G+ ++ Q R
Sbjct: 312 LYTDVVAHVNELQAKYNARVYLDA----TGVGDPIAEQVRN 348
>gi|224591489|ref|YP_002640832.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554623|gb|ACN56003.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKIDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYTFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFAYKKLYI 397
>gi|219869985|ref|YP_002474251.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692877|gb|ACL34089.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFAFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M A SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYMLLRNNMSQYFRIAPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|221641598|ref|YP_002527783.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|225622087|ref|YP_002725040.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|221237550|gb|ACM10383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|225546885|gb|ACN92880.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKIDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYTFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFAYKKLYI 397
>gi|317492999|ref|ZP_07951423.1| hypothetical protein HMPREF0864_02187 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919121|gb|EFV40456.1| hypothetical protein HMPREF0864_02187 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 535
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/279 (12%), Positives = 74/279 (26%), Gaps = 50/279 (17%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGL------------------V 44
E+ + ++ F+E + ++E + +
Sbjct: 127 EKDYWDYHGQEFPFIGFNELTKQPNPDFYESMFSCRRSSFRPQDYPLPDGSLLPNIPLET 186
Query: 45 TLTLTPLKGRSPIIEHYLSASSSD------------------------RQVIRMTINETP 80
T P ++ + R I + E P
Sbjct: 187 FNTTNPFGIGHTWVKKRFIDPAPRGTIIRDKQMVPNPQTQQDEEITLTRVAIHGSFKENP 246
Query: 81 HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED--IVINSLDIPEHWVQIGG 138
+ + +++ ++R+A +G + SG F + + VI IP+ W
Sbjct: 247 YLDPVYIATLMNIKDPNKRKAWVEGSWDVTSGGRFDHLWNESLHVIKPFKIPDSWTVDRS 306
Query: 139 MDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQ 198
D+G PF+ D + + P + + W P
Sbjct: 307 HDWGESKPFSNLWWA-QSDGTEATLPD--GSKFCPPTGSLILIGEWYGCPPDELNKGLNM 363
Query: 199 HDKRSGEQLS-AQYRRQGMKMLPECATFDDGSNGVEAGI 236
+ ++ R G ++ T G + GI
Sbjct: 364 SSTNVAKGVAWVDKRLMGEEVEEPEETQGKGQMHIVPGI 402
>gi|225622132|ref|YP_002725127.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546387|gb|ACN92395.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/252 (9%), Positives = 64/252 (25%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYQARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224591529|ref|YP_002640858.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554111|gb|ACN55505.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + V+ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALVFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|226246851|ref|YP_002776184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|226202003|gb|ACO38584.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DNMA-TFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPGNDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312147626|gb|ADQ30287.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATALHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|195942876|ref|ZP_03088258.1| hypothetical protein Bbur8_08745 [Borrelia burgdorferi 80a]
gi|312149906|gb|ADQ29970.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|225576365|ref|YP_002725382.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|225546718|gb|ACN92719.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---GKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|226322171|ref|ZP_03797692.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226232426|gb|EEH31184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312201416|gb|ADQ44721.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312201145|gb|ADQ44458.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITA 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|157146113|ref|YP_001453432.1| hypothetical protein CKO_01869 [Citrobacter koseri ATCC BAA-895]
gi|157083318|gb|ABV12996.1| hypothetical protein CKO_01869 [Citrobacter koseri ATCC BAA-895]
Length = 523
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 46/201 (22%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGL--------------- 43
+ + ++ F+E + ++E + +
Sbjct: 108 FGSEADDYWNFHGQEFPFIGFNELTKQPNSDFYEAMFSCRRSSFRPEDYPRKDGSLLKPI 167
Query: 44 ---VTLTLTPLKGRSPIIEHYLSASSSD------------------------RQVIRMTI 76
V T P ++ + R I +
Sbjct: 168 PLEVFSTTNPFGIGHTWVKKRFIEPAPRGTVQRHKQLVFNPQTEREEEITLTRVAIHGSF 227
Query: 77 NETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED--IVINSLDIPEHWV 134
E P+ + Q ++ + R+A +G + SG F + + VI IP+ W
Sbjct: 228 KENPYLDPQYIATLMSIKDPNRRKAWVEGSWDVTSGGRFDHLWSEALHVIKPFRIPDSWT 287
Query: 135 QIGGMDFGWHHPFAAGHLVWN 155
D+G PF+
Sbjct: 288 VDRSHDWGESKPFSNLWWART 308
>gi|195942842|ref|ZP_03088224.1| hypothetical protein Bbur8_08565 [Borrelia burgdorferi 80a]
gi|312150044|gb|ADQ30103.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
N40]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNIGQYFRIVPVKPKSNKF-SRITA 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224022912|ref|YP_002606399.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929322|gb|ACN24038.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|154492413|ref|ZP_02032039.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC
43184]
gi|154087638|gb|EDN86683.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC
43184]
Length = 422
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 36/232 (15%)
Query: 30 YFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHY---------------LSASSSDRQVI 72
+ + + I + + + P I + Y ++ + I
Sbjct: 141 FDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLAEIDGVQVQISTHPNVLHI 200
Query: 73 RMTINET-PHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
T + + + + K + D + + + ++ +++
Sbjct: 201 HTTYFDNLENLSPEFLKEVEDMKANNPEKYAHVVIGRWADVAAGAVFKKWGIVDEFPAWA 260
Query: 132 HWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
G DFG+ P A+ + +Y+ + + L+ WG
Sbjct: 261 -KKVAIGQDFGYTHDPSASIRCGI--VDNALYLDEVDYRTGLLSSDIIKTLRPWGLK--- 314
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ +L + G+++ + G+ V AG+ M
Sbjct: 315 -------VIADSADPRLIQEVHNGGIRI----YAVEKGAGSVNAGLDKMKSM 355
>gi|224022879|ref|YP_002606358.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|224590757|ref|YP_002640761.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224593734|ref|YP_002641063.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|226246755|ref|YP_002776089.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|223929807|gb|ACN24513.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|224553954|gb|ACN55352.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554038|gb|ACN55434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|226201931|gb|ACO38514.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|11497214|ref|NP_051333.1| hypothetical protein BB_M42 [Borrelia burgdorferi B31]
gi|223987696|ref|YP_002601254.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225575916|ref|YP_002724772.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|225576096|ref|YP_002724941.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|6382235|gb|AAF07550.1|AE001578_21 conserved hypothetical protein [Borrelia burgdorferi B31]
gi|223929409|gb|ACN24123.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225546099|gb|ACN92115.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546556|gb|ACN92560.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|56561122|ref|YP_161529.1| hypothetical protein BGP243 [Borrelia garinii PBi]
gi|226322231|ref|ZP_03797750.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|52696759|gb|AAU86094.1| hypothetical protein BGP243 [Borrelia garinii PBi]
gi|226232381|gb|EEH31141.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224022952|ref|YP_002606442.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|223929838|gb|ACN24543.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNI 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312201279|gb|ADQ44587.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
gi|312201518|gb|ADQ44817.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|224590701|ref|YP_002640718.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|224554531|gb|ACN55913.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|195942413|ref|ZP_03087795.1| hypothetical protein Bbur8_06149 [Borrelia burgdorferi 80a]
gi|312201120|gb|ADQ44434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
gi|312201339|gb|ADQ44646.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFAFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYMLLRNNMSQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|219722941|ref|YP_002474367.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692617|gb|ACL33836.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312148805|gb|ADQ31454.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNMSQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|308186468|ref|YP_003930599.1| PBSX phage terminase large subunit [Pantoea vagans C9-1]
gi|308056978|gb|ADO09150.1| PBSX phage terminase large subunit [Pantoea vagans C9-1]
Length = 267
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 9/167 (5%)
Query: 18 YVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
W DE + + + + +T P + S + + + D + M
Sbjct: 77 LCWVDEAESVSEIAWQKLSPTVREEGSEIWVTWNPERDGSATDKRFRKEAGDDCITVEMN 136
Query: 76 INETPHYN---EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ P + E ER+ +G + S + + + S ++ +
Sbjct: 137 YTDNPWFPDVLEGERQNDERRLDPATYAWVWEGAYLENSDKQVLAGKYRVAEFSDNLWKE 196
Query: 133 WVQ-IGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ G DFG+ P + +YV ++
Sbjct: 197 AERLFFGADFGFAKDPNTLMRSFI--LHNRLYVEYEAYGQQTELDHM 241
>gi|195942125|ref|ZP_03087507.1| hypothetical protein Bbur8_04585 [Borrelia burgdorferi 80a]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI---FTQ 268
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + + A + R D Y R + +
Sbjct: 269 INITDDYVFTSSIAYLDPAFSVGGDNTALCVM--ERVDDKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVLENFNVHTFYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|195942593|ref|ZP_03087975.1| hypothetical protein Bbur8_07129 [Borrelia burgdorferi 80a]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312148787|gb|ADQ31437.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312147565|gb|ADQ30229.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|218202781|ref|YP_002364699.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|218164309|gb|ACK74373.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|56560912|ref|YP_161331.1| hypothetical protein BGP046 [Borrelia garinii PBi]
gi|52696553|gb|AAU85896.1| hypothetical protein BGP046 [Borrelia garinii PBi]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/238 (11%), Positives = 61/238 (25%), Gaps = 16/238 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSTLIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-VATFKTYNFTTYDNVLLSKGFIETQEKLYKEIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + A + +R D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDN-TALCVM--DRVDDKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGKWLPWA--WPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ + + D K +G G
Sbjct: 327 VKTVLENFNVNTLYLEDRDN-TKGAGALTREYMTLRNNMGHYFRIVPIKPKSNKFSRI 383
>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 442
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/215 (9%), Positives = 58/215 (26%), Gaps = 16/215 (7%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + + V DE + +++ + A + + + KG++ E Y A
Sbjct: 119 PDALRGIYLDGVILDEYADIKPELWGGVIRPALADRQGWAVFIGTPKGQNQFYEMYQHAE 178
Query: 66 S-SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
+ +ET +E K + E + + + ++
Sbjct: 179 KSAGWYSCIYRTDETGVLPAEELKDMQAQMTEMEIRQELLCDFTASASDVVIPIDLVTAA 238
Query: 125 NSLDIPEHWVQIGGMDFGWH-----HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+ + + V + G + +++ + + + +
Sbjct: 239 ANRLLKDDDVLGQPVILGVDVARFGDDRTVLCV-----RQGLWLKEVRTFTGLSTMETAS 293
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
+ PH G + + R+
Sbjct: 294 RVIDCINQHH---PHATFIDAGAMGAGVIDRLRQL 325
>gi|226315790|ref|YP_002776047.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|226201663|gb|ACO38256.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKPYKDIPLYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISPYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|219723152|ref|YP_002474571.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692773|gb|ACL33988.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|56560985|ref|YP_161401.1| hypothetical protein BGP116 [Borrelia garinii PBi]
gi|52696625|gb|AAU85966.1| hypothetical protein BGP116 [Borrelia garinii PBi]
Length = 336
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ SL
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCEPSLIS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGVHIKGN 256
>gi|195942518|ref|ZP_03087900.1| hypothetical protein Bbur8_06704 [Borrelia burgdorferi 80a]
gi|312149990|gb|ADQ30051.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/250 (9%), Positives = 63/250 (25%), Gaps = 9/250 (3%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ T + ++ + Y +AR GE + + I +
Sbjct: 213 DN-VETFKTYNFTTYDNVFLSKGFIETQEKLYKDIPAYKARVLLGEWLASTDSI---FTQ 268
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ + A + D ++ +N R I +
Sbjct: 269 INITEDYMFTSPIAYLDPTFSVGGDNTALCVMEKVDDKYYAFIFQNQRPANDPYIMNTVK 328
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ + + D K SG + + + I+ ++
Sbjct: 329 IVLENFNVHTLYLEDRDN-TKGSGGLTREYMKLRNNMSQYFRIAPVKPKSNKFTRITTLI 387
Query: 241 DRMRSGRWKV 250
+ +
Sbjct: 388 TPFTYKKLYI 397
>gi|224022826|ref|YP_002606317.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|223929278|gb|ACN23995.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
Length = 450
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYMLLRNNMSQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|312201565|gb|ADQ44863.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|221316998|ref|YP_002533177.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|221237630|gb|ACM10461.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
Length = 450
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFASPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVTPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFAYKKLYI 397
>gi|195942433|ref|ZP_03087815.1| hypothetical protein Bbur8_06259 [Borrelia burgdorferi 80a]
Length = 450
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPLYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVLENFNVHTFYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|169334313|ref|ZP_02861506.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM
17244]
gi|169259030|gb|EDS72996.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM
17244]
Length = 488
Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 43/157 (27%), Gaps = 9/157 (5%)
Query: 19 VWFDE--EPPEDVYFEG--LTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRM 74
VW +E E ED Y + R ++ + ++L P+ I ++ +
Sbjct: 134 VWIEEASEIEEDDYKQLNVRLRGGKSKKQIVMSLNPIDINHWIKLKLIN--EDKATYLHT 191
Query: 75 TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN-SLDIPEHW 133
T + +E ++ + + G + + DI
Sbjct: 192 TYKDNRFIDEDYKRELESYKDTDIYYYNVYCLGMWGVLGDSVFDVGVVNNQLAKDIRPVK 251
Query: 134 VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
D+ I + ++ + R
Sbjct: 252 RGYFLYDYDGKDITNIRW--IEDAGGYINIYEDVKGR 286
>gi|281416256|ref|YP_003347605.1| terminase large subunit [Enterococcus phage phiFL3A]
gi|270209521|gb|ACZ64062.1| terminase large subunit [Enterococcus phage phiFL3A]
Length = 196
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 10/123 (8%)
Query: 121 DIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
I + G+DFG+ P A +++ + IY + + +
Sbjct: 15 KGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNRELAK 74
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+K+ G + D + D + ++ +K L G + VE G +
Sbjct: 75 KVKAKG------YEADRIGADSAEPKSIAELINEHSIKKLY---GVKKGPDSVEYGEGWL 125
Query: 240 LDR 242
D
Sbjct: 126 DDL 128
>gi|221316874|ref|YP_002527821.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|226246930|ref|YP_002776267.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|221237339|gb|ACM10180.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|226201508|gb|ACO38105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 450
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/250 (10%), Positives = 67/250 (26%), Gaps = 9/250 (3%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ T + ++ + Y +AR GE + + I +
Sbjct: 213 DN-VETFKTYNFTTYDNVFLSKGFIETQEKLYKDIPAYKARVLLGEWLASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + A + D ++ +N R I +
Sbjct: 270 NITEDYMFTSPIAYLDPAFSVGGDN-TALCVMEKVDDKYYAFIFQNQRPANDPYIMNTVK 328
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ + + D K SG + + + I+ ++
Sbjct: 329 IVLENFNVHTLYLEDRDN-TKGSGGLTREYMKLRNNMSQYFRIAPVKPKSNKFTRITTLI 387
Query: 241 DRMRSGRWKV 250
+ +
Sbjct: 388 TPFTYKKLYI 397
>gi|254240379|ref|ZP_04933701.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192]
gi|126193757|gb|EAZ57820.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192]
Length = 433
Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 82/271 (30%), Gaps = 39/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINAT----QGLVTLTLTPL 51
++ E+ V DE + + + R+ + V +T TP
Sbjct: 107 RSMEK-PQTIVGFKVGRSLVDELDVLSLVKAQQAWRKIIARMRYKVDGLRNRVDVTTTPE 165
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + + ++ +++ + + + + +++SYP A +
Sbjct: 166 -GFKFVFQQFVKQLREKPHLQDLYGLVQASTYDNEANLPDDYIDSLMESYPPQLIAAYLR 224
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + + GMDF A H+ + + +
Sbjct: 225 GQFVNLTSGTIYTAYDRTLNASPETVQPGEPIYVGMDFNVGKMAAVVHV---KRLGLPHA 281
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD--KRSGEQL---------SAQYR 212
V TP + + + + SG+ A +
Sbjct: 282 VDEIVNGYDTPDMIRQIKERFWLYADGEYRPTRQIRIYPDASGDSRKSVRASETDIALLK 341
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G + + + V+ I+ M
Sbjct: 342 QAGFVV-----SAPAANPPVKDRINSMNAMF 367
>gi|16798785|ref|NP_463463.1| putative terminase large subunit [Listeria phage A118]
gi|254831265|ref|ZP_05235920.1| putative terminase large subunit from bacteriophage A118 [Listeria
monocytogenes 10403S]
gi|5823600|emb|CAB53788.1| putative terminase large subunit [Listeria phage A118]
Length = 443
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 29/258 (11%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHY--LS 63
V +WF+E DV + R + QG + ++ P + + Y
Sbjct: 135 YVSGLWFEELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSK 194
Query: 64 ASSSDRQVIRMTINETP----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
S D + T + ++ L GE I ++ +
Sbjct: 195 RSDDDYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNL 254
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQT 173
+ + +D G +VI + Y ++
Sbjct: 255 FQPLKAIPADDRLILIDFAIDTGHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKA 314
Query: 174 PIFHVAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
P + L+ + + + D D G + Y+ G+ + P G
Sbjct: 315 PSEYSKELRDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK- 369
Query: 232 VEAGISDMLDRMRSGRWK 249
I + D + GR+
Sbjct: 370 -VDMIDFVCDLLAQGRFY 386
>gi|219723512|ref|YP_002476767.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694406|gb|ACL34930.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 396
Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPDIIS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGIHIKGN 256
>gi|221316912|ref|YP_002533066.1| PBSX family phage terminase large subunit [Borrelia burgdorferi
72a]
gi|221237378|gb|ACM10217.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
72a]
Length = 450
Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 60/232 (25%), Gaps = 12/232 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+K+ + + + D G R M SN
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNMSQYFRIVPVKPKSN 378
>gi|3318666|gb|AAC26153.1| BBA31 homolog [Borrelia burgdorferi 297]
Length = 450
Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERYRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + N + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNISQYFRIVPVKPKFNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFNYKKLYI 397
>gi|224593667|ref|YP_002641021.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554694|gb|ACN56072.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 68/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYKFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + + Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERID---EKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M A SN I+
Sbjct: 327 MKTVLENFNVHTLYLEDRDNTKGAGGLTREYMLLRNNMSQYFRIAPVKPKSNKF-NRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|11497404|ref|NP_051512.1| hypothetical protein BB_Q50 [Borrelia burgdorferi B31]
gi|6382425|gb|AAF07735.1|AE001584_32 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 60/232 (25%), Gaps = 12/232 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+K+ + + + D G R M SN
Sbjct: 327 VKTVLENFNVHTFYLEDRDNTKGAGGLTREYILLRNNMGQYFRIVPVKPKSN 378
>gi|152989642|ref|YP_001347771.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7]
gi|150964800|gb|ABR86825.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7]
Length = 436
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 81/271 (29%), Gaps = 39/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINAT----QGLVTLTLTPL 51
++ E+ V DE + + + R+ + V +T TP
Sbjct: 107 RSMEK-PQTIVGFKVGRSLVDELDVLSLVKAQQAWRKIIARMRYKVDGLRNRVDVTTTPE 165
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + + ++ +++ + + + + +++SYP A +
Sbjct: 166 -GFKFVFQQFVKQLREKPHLQDLYGLVQASTYDNEANLPDDYIDSLMESYPPQLIAAYLR 224
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + + GMDF A H+ + + +
Sbjct: 225 GQFVNLTSGTIYTAYDRTLNASQEMVQPGEPIFVGMDFNVGKMAAVVHV---KRMGLPHA 281
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD--KRSGEQL---------SAQYR 212
V TP + + + + SG+ A +
Sbjct: 282 VDEIVNGYDTPDMIRQIKERFWLYADGEYRPTRQIRIYPDASGDSRKSVRASETDIALLK 341
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G + + V+ I+ M
Sbjct: 342 QAGF-----IVSAPAANPPVKDRINSMNAMF 367
>gi|225575886|ref|YP_002724729.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546289|gb|ACN92300.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/232 (11%), Positives = 59/232 (25%), Gaps = 12/232 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+K+ + + + D G R M N
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRNNMSQYFRIVPVKPKPN 378
>gi|293433738|ref|ZP_06662166.1| hypothetical protein ECCG_01867 [Escherichia coli B088]
gi|291324557|gb|EFE63979.1| hypothetical protein ECCG_01867 [Escherichia coli B088]
Length = 442
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/170 (10%), Positives = 43/170 (25%), Gaps = 16/170 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL- 51
+ + + H V DE E+++ + +G + TP
Sbjct: 111 FWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNG 170
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
S S + + P+ ++E + + E
Sbjct: 171 IDESNFFYAICHDESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWS 230
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+ + + + +D+P H I + + + W
Sbjct: 231 KDALLDVDKLLVDGQPVDMPPHCDMIFAVMDTALKGGTENDGTGVVYFAW 280
>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 454
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 20/238 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE---DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
++ + Y W DE + + + + + T + + +
Sbjct: 163 DPEQLRGPEFDYGWADEIAKWRYPSAWDNLMLALRIGKSPQCIATTTPRPVRWLADL--- 219
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILG-SGRIFPIVEE 120
A++ D +++ E + +G + ++ +
Sbjct: 220 AAAEDTVLVQGASRENAANLSPAFMAAMHRRFGDSYLARQELEGIMMSNLPDALWCRNDI 279
Query: 121 DIVINSLDIPEHWVQI---GGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ + +++I G ++D + + + TP
Sbjct: 280 LRLHRPMPKRHRFIRIVIGVDPAMGGGDETGIITAGKDQDGHIWILADD--SLHATPDRW 337
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLS-AQYRRQGMKMLPECATFDDGSNGVEA 234
++ + W D + + G L + G LP S + A
Sbjct: 338 AVQIQR----VFRQWRADSVIAEINQGGSLIRTLLAQAGC-ALPVREVRAMRSKSIRA 390
>gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482]
Length = 443
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/171 (9%), Positives = 39/171 (22%), Gaps = 19/171 (11%)
Query: 12 QSNTVHYVWFDEEPPE-------DVYFEGLTRI-NATQGLVTLTLTPL-KGRSPIIEHYL 62
+ + DE +++ + + T+G + TP
Sbjct: 121 RGREYEIILIDEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAIC 180
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI----LGSGRIFPIV 118
+ P +E ++ + E + +
Sbjct: 181 HNKDLGFHEHHAPTSSNPFVPPEELEKERQNNDPRVFRQEFLAEFVDWSAASLFDVRKWF 240
Query: 119 EEDIVINSLDIPEHWV-----QIGGMDFGWHHP-FAAGHLVWNRDSDVIYV 163
E + +D PE + G H A + + + +
Sbjct: 241 EGENQDQPVDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRL 291
>gi|225622041|ref|YP_002724986.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546350|gb|ACN92359.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANYPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R + SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTREYILLRSNISQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFAYKKLYI 397
>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
Length = 445
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/208 (11%), Positives = 49/208 (23%), Gaps = 15/208 (7%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPI 57
++ + + + H V DE +DV + + + TP
Sbjct: 136 FRSAD-NPTSIRGESYHLVILDEAAFIKDDVVKYVIKPLLLDYDAPLIEISTPNGHNHFY 194
Query: 58 IEHYLSASSSDRQV-IRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSGRI 114
+ + +R + R P + + I + E I + +
Sbjct: 195 ESFLMGKNKQNRHISFRFPTWTNPFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNEAV 254
Query: 115 FPIVEEDIVINSLDI-----PEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
F I+ + G+D + ++ V R
Sbjct: 255 FNWEYIQQCIDGTIKLLKSGESGHQYVMGVDLAKFEDYTVITVLDVSVKPYKLVYFE-RF 313
Query: 170 REQTPIFHVAALKSWGK--WLPWAWPHD 195
F +K + P
Sbjct: 314 NLMPYSFVADKVKELYQLFNKPQVCMDA 341
>gi|56560881|ref|YP_161301.1| hypothetical protein BGP016 [Borrelia garinii PBi]
gi|52696522|gb|AAU85866.1| hypothetical protein BGP016 [Borrelia garinii PBi]
Length = 396
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ SL
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCEPSLIS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGVHIKGN 256
>gi|119757034|ref|YP_919076.1| hypothetical protein BJ1_gp49 [Archaeal BJ1 virus]
gi|119507049|emb|CAL92471.1| hypothetical protein [Archaeal BJ1 virus]
Length = 447
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 74/268 (27%), Gaps = 32/268 (11%)
Query: 8 RDKWQSNTVHYVWFDEEPPE-------DVYFEGLTRINATQGL-VTLTLTPLKGRSPIIE 59
+++ +W DE D++ +TR G TL + G + +
Sbjct: 130 WNRFAGGEYCRIWCDEVGHYPPNTDLYDLHEMLITRQRTEIGPNTTLWTSTGNGFNQFYD 189
Query: 60 HYLSASSSD---------RQVIRMTINETPHYNEQERKRIIDSYPLHERE-ARTKGEPIL 109
++D +V+ + +I + RE G
Sbjct: 190 ITERQVNADDEPLPWADQMEVVVASTEHNTLLPPDGLDKIRRQFKGTAREEQGLHGGFAA 249
Query: 110 GSGRIFP-IVEEDIVINSLDIPE---HWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
G ++ + V ++ D+ + + G D GW+ P + V
Sbjct: 250 AEGLVYDAFTRQTHVRDADDVRDRLADDWAMYGYDAGWNDPRVLLDIRKTHAGQ-FVVWD 308
Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
+ H+A L LP D + G + +
Sbjct: 309 QFYKS----ESHLAELVDPDDALP--ADVDPWLAGRPRGRVYAEHEPAHIEQFRKANWPA 362
Query: 226 DDGSNGVEAGISDMLDRM---RSGRWKV 250
++ GI + R+ GR V
Sbjct: 363 VKAEKSLDGGIDHVRSRLAMDDEGRPGV 390
>gi|11497247|ref|NP_051377.1| hypothetical protein BB_O44 [Borrelia burgdorferi B31]
gi|6382268|gb|AAF07582.1|AE001579_11 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITNDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M SN + I+
Sbjct: 327 VKTVLENFNVHTLYLEDRDNTKGAGGLTREYMLLRNNMGQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|219053375|ref|YP_002455734.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|226234324|ref|YP_002775459.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|216752668|gb|ACJ73353.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|226202138|gb|ACO37810.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 396
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 12/136 (8%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS-SSDRQVIRMT 75
+W +E D + + G + ++ P+ + + YL+ + +I+ T
Sbjct: 123 LWLEEANQFSADDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANEDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKG-EPILGSGRIFPIVEEDIVINSLD 128
+ P N + + ++ L G E G+ R+ E +
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIKEFFE--CSPDII 240
Query: 129 IPEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 241 SRVNGSYYTGIHVKGN 256
>gi|307309864|ref|ZP_07589514.1| conserved hypothetical protein [Escherichia coli W]
gi|306909582|gb|EFN40076.1| conserved hypothetical protein [Escherichia coli W]
gi|315060632|gb|ADT74959.1| phage terminase large subunit [Escherichia coli W]
gi|323378804|gb|ADX51072.1| hypothetical protein EKO11_2468 [Escherichia coli KO11]
Length = 442
Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/170 (9%), Positives = 43/170 (25%), Gaps = 16/170 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL- 51
+ + + H V DE E+++ + +G + TP
Sbjct: 111 FWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNG 170
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
S S + + P+ ++E + + E
Sbjct: 171 IDESNFFYAICHDESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWS 230
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+ + + + +++P H I + + + +
Sbjct: 231 KDALLDVDKLLVDGQPVEMPPHCDMIFAVMDTALKGGTENDGTGVVYFAY 280
>gi|291334831|gb|ADD94471.1| hypothetical protein [uncultured phage MedDCM-OCT-S06-C1041]
Length = 223
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 18/162 (11%)
Query: 94 YPLHEREARTKGEPILGS-----GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFA 148
+ + GR+ +++ I+ ++ + D G A
Sbjct: 1 MSEEQYNQEFECSWTAAIQGSYYGRLLEEAQKEQRISKINHDPALLVETWWDLGISDSTA 60
Query: 149 AGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP-----WAWPHDGLQHDKRS 203
R+ I ++ Y + +V L+ K +PHD Q +
Sbjct: 61 IWFA--QRNGAEIRLIDYYEATGEPLTHYVNVLEEKAKAGKWKFGNHVFPHDVRQRSLDT 118
Query: 204 GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
G G+++ VE GI + ++++
Sbjct: 119 GRTRIEALNSLGIEVTIAPLQK------VEDGIEAVRRQLKN 154
>gi|293414703|ref|ZP_06657352.1| hypothetical protein ECDG_01266 [Escherichia coli B185]
gi|291434761|gb|EFF07734.1| hypothetical protein ECDG_01266 [Escherichia coli B185]
Length = 442
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/170 (9%), Positives = 43/170 (25%), Gaps = 16/170 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL- 51
+ + + H V DE E+++ + +G + TP
Sbjct: 111 FWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNG 170
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
S S + + P+ ++E + + E
Sbjct: 171 IDESNFFYAICHDESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWS 230
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+ + + + +++P H I + + + +
Sbjct: 231 KDALLDVDKLLVDGQPIEMPPHCDMIFAVMDTALKGGTENDGTGVVYFAY 280
>gi|226315677|ref|YP_002775693.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226202054|gb|ACO38634.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 396
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSADDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPEILS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGIHVKGN 256
>gi|224797098|ref|YP_002642985.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554508|gb|ACN55891.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 396
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVQAWLEKQKLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPDILS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGIHIKGN 256
>gi|219048282|ref|YP_002455497.1| PbsX family phage terminase large subunit [Borrelia afzelii ACA-1]
gi|216752464|gb|ACJ73223.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
Length = 396
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS-SSDRQVIRMT 75
+W +E D + + G + ++ P+ + + YL+ + +I+ T
Sbjct: 123 LWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANEDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ SL
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCEPSLIS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGVHIKGN 256
>gi|123442572|ref|YP_001006549.1| putative phage terminase large subunit [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122089533|emb|CAL12381.1| putative phage terminase large subunit [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 520
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 51/189 (26%), Gaps = 46/189 (24%)
Query: 11 WQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGL------------------VTLTLTP 50
+ ++ F+E + ++E + + T P
Sbjct: 118 YHGQEFPFIGFNELTKQPNADFYESMFSCRRSSFRPQDYPLPDGSLLPNIPLETFNTTNP 177
Query: 51 LKGRSPIIEHYLSASSSD------------------------RQVIRMTINETPHYNEQE 86
++ + R I + E P+ +
Sbjct: 178 FGIGHTWVKKRFIEPAPRGTIIRDTQMVPNPQTQQDEEITLTRVAIHGSFKENPYLDPVY 237
Query: 87 RKRIIDSYPLHEREARTKGEPILGSGRIFP--IVEEDIVINSLDIPEHWVQIGGMDFGWH 144
+++ ++R+A +G + SG F E VI IP+ W D+G
Sbjct: 238 IASLMNIKDPNKRKAWVEGSWDVTSGGRFDHLWNESIHVIKPFRIPDSWTVDRSHDWGES 297
Query: 145 HPFAAGHLV 153
PF+
Sbjct: 298 KPFSNLWWA 306
>gi|195942183|ref|ZP_03087565.1| hypothetical protein Bbur8_04905 [Borrelia burgdorferi 80a]
gi|219786709|ref|YP_002477434.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692709|gb|ACL33925.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312148688|gb|ADQ31340.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
gi|312148897|gb|ADQ31544.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
gi|312201269|gb|ADQ44578.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 396
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSADDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPEILS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGIHVKGN 256
>gi|210632155|ref|ZP_03297229.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279]
gi|210159703|gb|EEA90674.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279]
Length = 561
Score = 58.6 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 70/244 (28%), Gaps = 28/244 (11%)
Query: 16 VHYVWFDEEPPEDVYFEGLT-RINATQGL----VTLTLTPLKGR-SPIIEHYLSASSSDR 69
+ ++WF+E E T R +A +G V T P + R + + + +
Sbjct: 260 IGFLWFEECDQFKGMSELRTVRQSAARGGERAIVVYTYNPPRTRDNWANKEADRRRDAGQ 319
Query: 70 QVIRMTINETP--HYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVIN 125
+V + P Q D E GEP+ G E +
Sbjct: 320 EVFDSCYTDAPPEWLGAQFIADAEDLRQTDEQAYRHEYLGEPVGY-GGQIFDRVEFREVT 378
Query: 126 SLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSW 184
+I G DFGW P+A W + + P +K
Sbjct: 379 DAEIASFERVHAGQDFGWFPDPWALTLSEWQPGEHRVVTFYEDGGCKLQPPETAERVKRA 438
Query: 185 GKWLPWAWPHDGLQH-----DKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
W D S +++ AQ R +G+ G+ DM
Sbjct: 439 LTWPDREGAEPAYHRLRVLSDDASPDRIQAQ-RDEGVDARAAGKG----------GLRDM 487
Query: 240 LDRM 243
R
Sbjct: 488 SYRF 491
>gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
Length = 463
Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/242 (7%), Positives = 55/242 (22%), Gaps = 21/242 (8%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPI 57
+ ++ + V W +E E+ + I V + P +
Sbjct: 115 FYGLARNIEEIKGTEGVDVCWIEEGEGLTEEQWSIIDPTIRKEGAEVWVLWNPHLITDFV 174
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIF 115
+ +D + + + P + ++ + G+P+
Sbjct: 175 QAKLPALLGADCIIRHINYPDNPFLSATAKRKAERLKEADPDAYRHIYLGQPLSSDDASV 234
Query: 116 PIVE------EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
+ + +++ + A D + + +
Sbjct: 235 IKFHWIEAAVDAHLKLGIELGGARTVGYDVADSGADKNACSVF----DGAICDELDEWAA 290
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
E ++W +D + G + + G++
Sbjct: 291 PEDELNQSTK--RAWAHVRNGILVYDSI----GVGAHVGSTLADAGIRTGYHKFNAGGAV 344
Query: 230 NG 231
Sbjct: 345 IS 346
>gi|187939660|gb|ACD38803.1| phage terminase large subunit [Pseudomonas aeruginosa]
gi|187939739|gb|ACD38880.1| hypothetical phage protein [Pseudomonas aeruginosa]
Length = 431
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 82/271 (30%), Gaps = 39/271 (14%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINAT----QGLVTLTLTPL 51
++ E+ V DE + + + R+ + V +T TP
Sbjct: 102 RSMEK-PQTIVGFKVGRSLVDELDVLSLIKAQQAWRKIIARMRYKVDGLRNRVDVTTTPE 160
Query: 52 KGRSPIIEHYLSASSSD------RQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTK 104
G + + ++ +++ + + + + ++DSYP A +
Sbjct: 161 -GFKFVFQQFVKQLREKPHLQDLYGLVQASTYDNEANLPDDYIDSLMDSYPPQLIAAYLR 219
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
G+ + L SG I+ + + + + GMDF A H+ + + +
Sbjct: 220 GQFVNLTSGTIYTAYDRKLNASQETVQPGEPIYVGMDFNVGKMAAVVHV---KRLGLPHA 276
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD--KRSGEQL---------SAQYR 212
V TP + + + + SG+ A +
Sbjct: 277 VDEIVNGYDTPDMIRQIKERFWLYADGEYRPTRQIRIYPDASGDSRKSVRASETDIALLK 336
Query: 213 RQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+ G + + + V+ I+ M
Sbjct: 337 QAGFVV-----SAPAANPPVKDRINSMNAMF 362
>gi|161613293|ref|YP_001587258.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362657|gb|ABX66425.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 443
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/171 (9%), Positives = 40/171 (23%), Gaps = 19/171 (11%)
Query: 12 QSNTVHYVWFDEEPP-------EDVYFEGLTRI-NATQGLVTLTLTPL-KGRSPIIEHYL 62
+ + DE +++ + + T+G + TP
Sbjct: 121 RGREYEIILIDEAAFTKSPEMLREIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAIC 180
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI----LGSGRIFPIV 118
+ + P +E ++ + E + I
Sbjct: 181 HDKNLGFIEHHAPTSSNPFVPPEELEKEEANNDPRVFRQEFLAEFVDWSAASLFDIRKWF 240
Query: 119 EEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVWNRDSDVIYV 163
E + +D PE + + H A + + + +
Sbjct: 241 EGENQDQPVDYPEMCQAVFAVMDTAVKGGSEHDGTAVVYYAVDTRPGIQRL 291
>gi|146310689|ref|YP_001175763.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638]
gi|145317565|gb|ABP59712.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638]
Length = 402
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/170 (8%), Positives = 33/170 (19%), Gaps = 20/170 (11%)
Query: 12 QSNTVHYVWFDEEPPE-------DVYFEGLTRI-NATQGLVTLTLTPL-KGRSPIIEHYL 62
+ V DE +++ + + T+G + TP
Sbjct: 83 RGREYDLVLIDEAAFTKSPEMLAEIWAKSIKPTLLTTKGRAYIFSTPDGVDEDNFFYAIC 142
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ P +E ++ S E + S +
Sbjct: 143 RKKELGFFEHYAPTSSNPFVPPEELEKERLSCEPRVFRQEFLAEFVDWSADAL--FDVSK 200
Query: 123 VINSLDIPEHWVQIGGMDFGWH---------HPFAAGHLVWNRDSDVIYV 163
+ E + A + + +
Sbjct: 201 WLEDGKPVEFPEMCMAVFAVMDTAVKGGIEHDGTAVVYYAIDTRPGRERL 250
>gi|299137301|ref|ZP_07030483.1| hypothetical protein AciX8DRAFT_1788 [Acidobacterium sp. MP5ACTX8]
gi|298600706|gb|EFI56862.1| hypothetical protein AciX8DRAFT_1788 [Acidobacterium sp. MP5ACTX8]
Length = 517
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/309 (8%), Positives = 61/309 (19%), Gaps = 76/309 (24%)
Query: 12 QSNTVHYVWFDEEPPEDVYFEGLTRINAT-------QGLVTLTLTPLKGRSPIIEHYL-- 62
Q ++ +E + T P I+
Sbjct: 123 QGPEYADIFVEEATHFSEEELIFLPTALRWTGKSGITPKMLYTCNPGSRGHDYIKRIFKD 182
Query: 63 -----SASSSDRQVIRMTINETP-----------------------------HYNEQERK 88
++ + +
Sbjct: 183 RRFQEHEEPDSFAFVQAYGWDNIEWVRPYLHAQGITDFEYYNTWTDQQRFQCFIANSDYG 242
Query: 89 RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV-----INSLDIPEHWVQIGGMDFGW 143
++ P ER+A G+ G+ +P + W + D+G+
Sbjct: 243 AKLNQMPEKERKAHLFGDWDTFEGQYYPNFIRAQRELKAAQVGQLMQPWWRRWASCDWGY 302
Query: 144 HHPFAAGHLV----------------WNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187
H + W+ +V+ + + + +
Sbjct: 303 QHAASIHWHASGLVSPEDARRHLGREWSEAREVVITYREHVVAGRPEMLLAQDFVERCDN 362
Query: 188 L------PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + + +R G+ ++ N G +
Sbjct: 363 DDKRELSRFFMSPETFGERNAVADIFRKVFREHGLP------QPEEARNDRVNGWRFIHT 416
Query: 242 RMRSGRWKV 250
+ RW V
Sbjct: 417 LIEQDRWFV 425
>gi|257792356|ref|YP_003182962.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM
2243]
gi|257476253|gb|ACV56573.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM
2243]
Length = 559
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 20/228 (8%)
Query: 16 VHYVWFDEE------PPEDVYFEGLTRINATQGLVTLTLTPLKGRS-PIIEHYLSASSSD 68
+ W++E + LTR + T P + I +
Sbjct: 256 IGVAWYEEADMFKGMAEIRKVNQSLTRGGNDCIRLY-TYNPPRSVHSWINVEMQRRRDAG 314
Query: 69 RQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN- 125
V P +Q + + + + + E +V
Sbjct: 315 EPVFTSNYLNAPREWLGDQFHADAEELKRIDLKAYLHEYMGEAVGMGLEVFDPEKVVFRE 374
Query: 126 --SLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
+I G DFGW+ P+A W +++ + + + P ++
Sbjct: 375 ITDEEIAAFDNLKAGQDFGWYPDPWAFTLSEWRQNTRTLLTFREDGANKLHPGEQAKRIR 434
Query: 183 SWGKWLPW-----AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
+ W + H ++ D + E ++AQ R G+
Sbjct: 435 ALLTWRDTPDGDPVYHHIPVRSDDAAPEAIAAQ-RDAGINAREAGKGN 481
>gi|219872329|ref|YP_002476730.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694371|gb|ACL34896.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 396
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS-SSDRQVIRMT 75
+W +E + + + G V ++ P+ + + YLS + +I+ T
Sbjct: 123 LWLEEANQFTSEDIEMLIPTMREQGGRVYMSSNPVPKSHWLYKRYLSNEDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + ++ L GE G I E + ++
Sbjct: 183 YRDNPFLNGGNVQAWLEKQKLAYHGNDIGFRIEVLGE-EFDFGTARLIKEFKVCDPNIIS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 KVNGSYYTGIHVKGN 256
>gi|221316807|ref|YP_002527718.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
72a]
gi|225576280|ref|YP_002725297.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|221237285|gb|ACM10136.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
72a]
gi|225547220|gb|ACN93206.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTHEYMLLRNNMSQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|111074104|ref|YP_709233.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
gi|110891215|gb|ABH02376.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
Length = 450
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/237 (10%), Positives = 58/237 (24%), Gaps = 14/237 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-VATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
DI + + G + + D Y R + +
Sbjct: 270 DITQDYVFTSPIAYLDPAFSIGGDNTALCVMERID---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNVHTLYLEDRDNTKGAGALTREYMTLRNNMSHNFRIAPVKPKSNKFSRI 383
>gi|323976986|gb|EGB72073.1| hypothetical protein ERFG_01987 [Escherichia coli TW10509]
Length = 442
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/170 (9%), Positives = 43/170 (25%), Gaps = 16/170 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL- 51
+ + + H V DE E+++ + +G + TP
Sbjct: 111 FWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNG 170
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
S S + + P+ ++E + + E
Sbjct: 171 IDESNFFYAICHDESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWS 230
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+ + + + +++P H I + + + +
Sbjct: 231 KDALLDVDKLLVDGQPIEMPPHCDMIFAVMDTALKGGTENDGTGMVYFAY 280
>gi|225576150|ref|YP_002725083.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
gi|225546143|gb|ACN92158.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
Length = 450
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFVETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISD 238
+K+ + + + D G R M SN + I+
Sbjct: 327 VKTVIENFNVHTLYLEDRDNTKGAGGLTHEYMLLRNNMSQYFRIVPVKPKSNKF-SRITT 385
Query: 239 MLDRMRSGRWKV 250
++ + +
Sbjct: 386 LITPFTYKKLYI 397
>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
PD1222]
gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
denitrificans PD1222]
Length = 441
Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/258 (10%), Positives = 60/258 (23%), Gaps = 26/258 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPP--EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ W++E + + + T P P+
Sbjct: 112 NIKSLEG--FDIAWWEEAATAGQGPLDMLRPTLRKPGSQIWFTYNPRLRSDPVDVMMRQD 169
Query: 65 SS--SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--- 117
+ R V+ + P + + + E +G+ S F
Sbjct: 170 ARFADSRTVVEANWRDNPFRGPELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGL 229
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
V E + + +G + + RD+ +
Sbjct: 230 VREAMARQPFSQIGDELVLGVDVARFGDDRSVIWARRGRDAQT-----ELPIIMKGADTM 284
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML---------PECATFDDG 228
A + + P + G + + R+ G ++
Sbjct: 285 AVAARVMAEIDRLH-PDGVFIDEGGVGGGVIDRCRQMGYSVVGVNFGGKADRAIEGVPKC 343
Query: 229 SNGVEAGISDMLDRMRSG 246
N + M + +RSG
Sbjct: 344 RNKRAQMWATMREWLRSG 361
>gi|216997755|ref|YP_002333847.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|216752400|gb|ACJ73182.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
Length = 450
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 14/237 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSI--FAQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDNTALCVMERID---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNVHTLYLEDRDNTKGAGALTREYMTLRNNMSHNFRIAPVKPKSNKFSRI 383
>gi|197105675|ref|YP_002131052.1| hypothetical protein PHZ_c2212 [Phenylobacterium zucineum HLK1]
gi|196479095|gb|ACG78623.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 446
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/239 (10%), Positives = 51/239 (21%), Gaps = 20/239 (8%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
D ++ V F E + + G TP
Sbjct: 125 NYDSLVGSSPRGVVFSEWSLSKPQAWGFIRPILAENGGWALFLWTPRGRNHATRAFESRQ 184
Query: 65 SSSDRQVIRMTINETPHYNEQERKRII---------DSYPLHEREARTKGEPILGSGRIF 115
+ ++ +T + + + + + + + +
Sbjct: 185 REAGWFCLKSPATDTEVFTKAQLDQERAELIAELGSREEGEARFASEYLVDFDAAAPGAY 244
Query: 116 P-----IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
E I + D G A + + + +
Sbjct: 245 YATLLGEAERAGRIGRVPWDPAARVDTAWDLGIDDYTAIWFF--QQVGREVRAIDYFETS 302
Query: 171 EQTPIFHV-AALKSWGK-WLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
+ V A+ S W PHD + + +G GM + D
Sbjct: 303 GEGLPEIVRQAIGSKPYLWGTHHLPHDVMVRELATGRSRYETLASLGMSGIAVGQAADP 361
>gi|216968428|ref|YP_002333693.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
ACA-1]
gi|216752682|gb|ACJ73366.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
ACA-1]
Length = 450
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 14/237 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDNTALCVMERID---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNVHTLYLEDRDNTKGAGALTREYMTLRNNMSHNFRIAPVKPKSNKFSRI 383
>gi|16804339|ref|NP_465824.1| putative terminase large subunit from bacteriophage A118 [Listeria
monocytogenes EGD-e]
gi|16411770|emb|CAD00378.1| putative terminase large subunit from Bacteriophage A118 [Listeria
monocytogenes EGD-e]
Length = 443
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 69/254 (27%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHY--LSASSS 67
+WF+E DV + R + G + ++ P + + Y S
Sbjct: 139 LWFEELAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDD 198
Query: 68 DRQVIRMTINETP----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + T + ++ L GE I ++ + +
Sbjct: 199 DYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPL 258
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ +D G +VI + Y ++ P +
Sbjct: 259 KAIPADDRLILIDFAIDTGHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKAPSEY 318
Query: 178 VAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + D D G + Y+ G+ + P G
Sbjct: 319 SKELRDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK--VDM 372
Query: 236 ISDMLDRMRSGRWK 249
I + D + GR+
Sbjct: 373 IDFVCDLLAQGRFY 386
>gi|203288763|ref|YP_002223713.1| hypothetical protein BDU_2013 [Borrelia duttonii Ly]
gi|201084613|gb|ACH94190.1| uncharacterized conserved protein [Borrelia duttonii Ly]
Length = 398
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS-SSDRQVIRMT 75
+W +E + + + G + ++ P+ + + Y++ + VI+ T
Sbjct: 124 LWLEEANQFTESDIEKLIPTMRERGGRIYMSSNPVPRSHWLYKRYIANEDNPSVCVIKST 183
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + ++ L GE G I E I SL
Sbjct: 184 YRDNPFLNGGDVNAWLEKQKLAYHGNDIGFRIEVLGE-EFEFGTARFIKEFTICDESLIS 242
Query: 130 PEHWVQIGGMDFGWH 144
G+ +
Sbjct: 243 RVQGSFYTGIHIKGN 257
>gi|226234361|ref|YP_002775493.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226201889|gb|ACO38473.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 396
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSADDIEMLVPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPEILS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RTNGSYYTGIHVKGN 256
>gi|11496682|ref|NP_045481.1| hypothetical protein BBG21 [Borrelia burgdorferi B31]
gi|218868779|ref|YP_002455248.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|224796961|ref|YP_002642637.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224985496|ref|YP_002642672.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225548803|ref|YP_002724009.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|2690026|gb|AAC66069.1| predicted coding region BBG21 [Borrelia burgdorferi B31]
gi|218165273|gb|ACK75330.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|223929545|gb|ACN24257.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224554186|gb|ACN55578.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|225546810|gb|ACN92808.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 396
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSADDIEMLVPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPEILS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGIHVKGN 256
>gi|224796986|ref|YP_002642738.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553700|gb|ACN55104.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|312149848|gb|ADQ29915.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 396
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY-LSASSSDRQVIRMT 75
+W +E D + + G + ++ P+ + + Y + + +I+ T
Sbjct: 123 LWLEEANQFSADDIEMLVPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKGEPILGSGRIFPIVEEDIVINSLDI 129
+ P N + + ++ L GE G I + ++ +
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE-EFDFGTARLIKKFNVCGPEILS 241
Query: 130 PEHWVQIGGMDFGWH 144
+ G+ +
Sbjct: 242 RANGSYYTGIHVKGN 256
>gi|148912834|ref|YP_001293413.1| hypothetical protein ORF006 [Pseudomonas phage 73]
Length = 531
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/279 (8%), Positives = 61/279 (21%), Gaps = 73/279 (26%)
Query: 36 RINATQGLVTLTLTPLKGRSPIIEHYLSASSSD------------------------RQV 71
+ + V T P ++ + +
Sbjct: 189 PLPPVKCEVFSTTNPSGPGHNWVKRRFITIAPRGTVVRREIQIYNPATEKEETHVISQIA 248
Query: 72 IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI--NSLDI 129
I + E P+ + + R+A G+ + +G + + + I
Sbjct: 249 IFGSYKENPYLPASYIAELESIKEPNLRKAWLYGDWDVTAGGAIDDLWQSHIHVVPRFVI 308
Query: 130 PEHWVQIGGMDFGWHHPFAAGHLV------------------WNRDSDVIYVVKNYRCR- 170
P W D G HPF+ G + + + +
Sbjct: 309 PPSWRIDRTYDDGSSHPFSVGWWAEADGTEATIVLSDGTEFTFCPQPGSLIQLFEWYGCA 368
Query: 171 -------------EQTPIFHVAALKSWG-----------KWLPWAWPHDGLQHDKRSGEQ 206
+ + + + P + Q +
Sbjct: 369 KDEKGEYIPNKGLKLSASNIAQGIIDREISLMANGWILSQPWPGPADNRIRQVIDSELDT 428
Query: 207 LSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
++G++ + G+ DR+ +
Sbjct: 429 TEKLMSKKGVRWTESDKS----PGSRVIGLQLFRDRLEA 463
>gi|216996657|ref|YP_002333778.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
gi|216752579|gb|ACJ73283.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
Length = 450
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 14/237 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKIDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-VATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIAITDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDNTALCVMERID---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNVHTLYLEDRDNTKGAGALTREYMTLRNNMSHNFRIAPVKPKSNKFSRI 383
>gi|255103122|ref|ZP_05332099.1| hypothetical protein CdifQCD-6_20088 [Clostridium difficile
QCD-63q42]
gi|255652381|ref|ZP_05399283.1| hypothetical protein CdifQCD_19531 [Clostridium difficile
QCD-37x79]
Length = 440
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/264 (12%), Positives = 75/264 (28%), Gaps = 27/264 (10%)
Query: 7 GRDKWQSNTVHYVWFDEE------PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
K + N+ E ++ + + N + L P SPI +
Sbjct: 125 SYKKIRGNSYGMWIATEINLHHDNTIKEAFNRIIASTNRK---IFWDLNPDNPNSPIYKE 181
Query: 61 YLSASSS---------DRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPIL 109
Y+ + TI++ +++ ++ II Y + G+ +
Sbjct: 182 YIDSYMKKDREGTLLGGYNYQHFTIHDNITVSDERKRAIISQYDEGSIWYKRDILGQRCV 241
Query: 110 GSGRIF-PIVEEDIVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVVKNY 167
G I+ + I I G+DFG + A + + + +
Sbjct: 242 AEGLIYEYFANNKEQFKTETIDPLMDVIVGVDFGGNKSYHAFVATGITYNYKKVIALASE 301
Query: 168 RCREQT--PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
R T + + K + D + D + + ++ +
Sbjct: 302 RPSADTSPDELNALLINFIKKVINLHGKVDCIYCDSAEQVLIKGI--KNAVEKENLNVSV 359
Query: 226 DDG-SNGVEAGISDMLDRMRSGRW 248
+ N + I + GR+
Sbjct: 360 RNALKNAINDRIRLTDLLISQGRF 383
>gi|329568778|gb|EGG50578.1| hypothetical protein HMPREF9520_03410 [Enterococcus faecalis
TX1467]
Length = 170
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 131 EHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP 189
G+DFG+ P A +++ + IY + + + KS G
Sbjct: 4 NFDNIRNGLDFGYATDPLAFVRWHYDKKINGIYAIDEIYGVKISNREFANKAKSKG---- 59
Query: 190 WAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
+ D + D + ++ G +P G + VE G + D
Sbjct: 60 --YISDRIATDSAEPKSIAELNSEHG---MPRVFGVKKGPDSVEYGEEWLGDL 107
>gi|324117425|gb|EGC11331.1| hypothetical protein ERBG_02498 [Escherichia coli E1167]
Length = 442
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/170 (8%), Positives = 43/170 (25%), Gaps = 16/170 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL- 51
+ + + H V DE E+++ + +G + TP
Sbjct: 111 FWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNG 170
Query: 52 KGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
S S + + P+ ++E + + E
Sbjct: 171 IDESNFFYAICHDESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWS 230
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+ + + + +++P + I + + + +
Sbjct: 231 KDALLDVDKLLVDGQPIEMPPYCDMIFAVMDTALKGGTENDGTGVLYFAY 280
>gi|224535035|ref|ZP_03675589.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224513696|gb|EEF84036.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 379
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/233 (10%), Positives = 58/233 (24%), Gaps = 14/233 (6%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDNTALCVMERID---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGS 229
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNVHTLYLEDRDNTKGAGALTREYMTLRNNMSHNFRIAPVKPKSNK 379
>gi|225621943|ref|YP_002724616.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547242|gb|ACN93227.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 70/257 (27%), Gaps = 23/257 (8%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-VATFKTYNFTTYDNVLLSKGFIETQEKLYKEIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDNTALCVMERVD---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKSWGK--WLPWAWPHDGLQHDKRSGEQLSAQY-----RRQGMKMLPECATFDDGSNGVE 233
+K+ + + + D K +G +++P +
Sbjct: 327 VKTVLENFNVKTLYLEDRDN-TKGAGALTLEYMTLRNNMNHKFRIVP-----IKPKSNKF 380
Query: 234 AGISDMLDRMRSGRWKV 250
+ I+ ++ + +
Sbjct: 381 SRITSLITSFTYKKLYI 397
>gi|216969097|ref|YP_002333737.1| PBSX family phage termninase large subunit [Borrelia afzelii ACA-1]
gi|216753027|gb|ACJ73621.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
Length = 450
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 14/237 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYDFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I + + G + + D Y R + +
Sbjct: 270 NITQDYVFTSPIAYLDPAFSIGGDNTALCVMERID---DKYYAFVFQDQRPANDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQY---RRQGMKMLPECATFDDGSNGVE 233
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNVHTLYLEDRDNTKGAGALTREYMTLRNNMSHNFRIAPVKPKSNKFSRI 383
>gi|307545236|ref|YP_003897715.1| hypothetical protein HELO_2646 [Halomonas elongata DSM 2581]
gi|307217260|emb|CBV42530.1| hypothetical protein HELO_2646 [Halomonas elongata DSM 2581]
Length = 534
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 7/154 (4%)
Query: 84 EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW 143
+ + KR S P E +G + ++ + + + + + D G
Sbjct: 305 QDDMKREYPSTPAEAFEQSIEGAY--YASQMRFLRKNKRITAEVQVNPSLPVFTAWDLGM 362
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAW-PHDGLQHDKR 202
+ A I++V + ++ L G + PHD +
Sbjct: 363 NDTMAIWFAQI--VGREIHLVDYLEGEGEGIEYYADELNKKGYRYGGHFGPHDLAVRELG 420
Query: 203 SGEQLSAQYRRQGMKM--LPECATFDDGSNGVEA 234
+G+ + ++ G+K +P + +G V
Sbjct: 421 TGKSRADVAQQYGIKFEVVPRISNHAEGVQAVRN 454
>gi|157324962|ref|YP_001468388.1| TerL [Listeria phage A500]
gi|66732970|gb|AAY52789.1| TerL [Listeria phage A500]
Length = 443
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 73/254 (28%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHY--LSASSS 67
+WF+E DV + R + QG + ++ P + + Y S
Sbjct: 139 LWFEELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDD 198
Query: 68 DRQVIRMTINETP----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + T + ++ L GE I ++ + +
Sbjct: 199 DYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPL 258
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ +D G L + +VI + Y ++ P +
Sbjct: 259 KAIPADDRLILIDFAIDTGHQVSATTCLALGFTAKRNVILLDTYYYSPANQVVKKAPSDY 318
Query: 178 VAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + P D D G + Y+ G+ + P G
Sbjct: 319 SKELREFMTKVVSKYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK--VDM 372
Query: 236 ISDMLDRMRSGRWK 249
+ + D + GR+
Sbjct: 373 VDFVCDLLAQGRFY 386
>gi|71274944|ref|ZP_00651232.1| similar to Bacteriophage terminase large (ATPase) subunit and
inactivated derivatives [Xylella fastidiosa Dixon]
gi|71901567|ref|ZP_00683649.1| similar to Bacteriophage terminase large (ATPase) subunit and
inactivated derivatives [Xylella fastidiosa Ann-1]
gi|71164676|gb|EAO14390.1| similar to Bacteriophage terminase large (ATPase) subunit and
inactivated derivatives [Xylella fastidiosa Dixon]
gi|71728653|gb|EAO30802.1| similar to Bacteriophage terminase large (ATPase) subunit and
inactivated derivatives [Xylella fastidiosa Ann-1]
Length = 142
Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 60/102 (58%)
Query: 30 YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKR 89
YFE +TR N T GLV +T PLK ++ +L + DR ++M I + HY ++ R
Sbjct: 2 YFEVITRTNRTFGLVCMTFAPLKSILTVVWRFLLENVPDRADVQMIIEDAEHYFLEDCAR 61
Query: 90 IIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
I SYP +EREARTKG P LGSGR+FPI E I + E
Sbjct: 62 ITASYPPYEREARTKGVPALGSGRLFPIAGEKIGVAPEKKFE 103
>gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
Length = 459
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 6/158 (3%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
V +W +E E+ + I + L P + I ++++ +D +
Sbjct: 113 VDILWLEEAQYLTEEQWNVINPTIRREGSQIWLIWNPDQYTDFIYQNFVVNPPADCLSKQ 172
Query: 74 MTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ E P ++ K I D Y + E G P +G + ++ +
Sbjct: 173 INWTENPFLSDTMLKVIYDEYQRDPKLAEHVYGGAPKMGGDKAIIQLQYVLAAIDAHKKL 232
Query: 132 HWVQIGGMDFGWH--HPFAAGHLVWNRDSDVIYVVKNY 167
W G G+ + + + +V+ + +
Sbjct: 233 GWKIEGSKRTGFDIADDGDDANAIVDAIGNVVVWAEEW 270
>gi|256850663|ref|ZP_05556088.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|256712531|gb|EEU27527.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
Length = 418
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/257 (12%), Positives = 66/257 (25%), Gaps = 33/257 (12%)
Query: 19 VWFDE---EPPEDVYFEGLT------RINATQGLVTLTLTPLKGRSPIIEHY--LSASSS 67
VWF+E +V+ + + + ++ P + + + +
Sbjct: 114 VWFEEFSNLKNVNVFDQSVPTFIRQKPDFVKDVKIFISYNPPRNPYAWVNEWVTQRETDP 173
Query: 68 DRQVIRMTINE--TPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D V T + +Q+ I GE + +++ + +V
Sbjct: 174 DYFVDSSTYLDDELGFTTKQQLDLIEKYKQNDPDYYRWLYLGEAVGLGTQVYNMKLFKVV 233
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNY-----RCREQTPIFH 177
D GMD G+ A + +V + Y R+ +
Sbjct: 234 DRIPDDEYITDIFYGMDTGFMVSATACVACAFTNKYNVYVLDTFYYDPTKYERKLSASEQ 293
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG-- 235
+ + + + S G+ S + G
Sbjct: 294 AERVHDFINQITDKYGVLPCNQTIDS--------ADGGIYTQYWQMYNVQWSKVRKLGEA 345
Query: 236 --ISDMLDRMRSGRWKV 250
I + D GR V
Sbjct: 346 EMIDRVQDLAAQGRLHV 362
>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
Length = 330
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/224 (10%), Positives = 59/224 (26%), Gaps = 22/224 (9%)
Query: 15 TVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY------LSASS 66
V DE ++ E + A + + KG + + Y +S
Sbjct: 2 YFDGVVIDEVAQIKPTLWGEVIRPALADRKGWAAFIGTPKGINLFSQLYDQALNLMSKGD 61
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
D + ++ +T +E+E + +E + +++ +
Sbjct: 62 PDWIAMLYSVEQTHVIDEKELAALKVEMSENEFRQEFLCDFSAAQDNGLIPIDDIRAAAN 121
Query: 127 LDIPEHWVQIGGMDFGWH-----HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
E + +G + + V++ + V
Sbjct: 122 KFYRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNMALADRIAVEMA 181
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
K D + D +G+ + + R+ ++
Sbjct: 182 KEKP---------DAVFIDSGAGQGVIDRLRQMRFDVVEVPFGA 216
>gi|66391762|ref|YP_238486.1| terminase large subunit [Streptococcus phage 2972]
gi|168229277|ref|YP_001686798.1| orf4 [Streptococcus phage 858]
gi|56718419|gb|AAW27925.1| terminase large subunit [Streptococcus phage 2972]
gi|155241672|gb|ABT17992.1| orf4 [Streptococcus phage 858]
Length = 223
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 6 QGRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
G + + T + +E E V+ E ++R + V P + Y+
Sbjct: 115 SGLKRARGFTAFGAYVNEASLANEVVFKEIISRCSGEGARVVWDSNPDNPNHWLNRDYIG 174
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-LHEREARTKG 105
+ +++ +++ I + P + G
Sbjct: 175 KNDGKIIDFSFKLDDNTFLSKRYIDSIKAATPKGKFYDRDILG 217
>gi|148750837|ref|YP_001285878.1| putative terminase large subunit [Lactobacillus phage LL-H]
gi|134105522|gb|ABO60921.1| putative terminase large subunit [Lactobacillus phage LL-H]
Length = 433
Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 68/254 (26%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPP---EDVYFEGLT------RINATQGLVTLTLTPLKGRSPIIEHYLSAS--SS 67
VWF+E DV+ + + Q V + P K I +++
Sbjct: 129 VWFEEFANLKNIDVFDQAVPTFIRQKPAWLGQAKVYCSYNPPKNPYLWINEWITQKENDP 188
Query: 68 DRQVIRMTINE--TPHYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIFPIVEEDIV 123
+ + T + +Q+ I GE + ++ + V
Sbjct: 189 NFFIDHSTYLDDKLGFTTKQQLDMIDSYKENDFDYYRWLYLGEVVGLGTNVYNMDLFHPV 248
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ D GMD G + R DV + Y ++ P
Sbjct: 249 DSIPDGDYITDVYYGMDAGHEVSATTVVAVGLTRKGDVYLLDTYYYSPAGKTNKKPPSEL 308
Query: 178 VAALKSWGKWLPWAW--PHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + + L D G + Y G++ +
Sbjct: 309 AKDIHDFIDQVTEKYDKYPTRLTMDSAEGALDNQYYSMYGIRWHKVHKLKE------VDM 362
Query: 236 ISDMLDRMRSGRWK 249
I + D + GR
Sbjct: 363 IDRVQDLLAQGRVY 376
>gi|6841061|gb|AAF28884.1|AF123078_9 unknown [Borrelia hermsii]
Length = 450
Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 7/157 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E ++ E L R+ + P Y+
Sbjct: 153 ASDFERFRGSNSALIYVNEATTLHKETLIECLKRLRVGMETIIFDTNPDSPEHFFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
T + +++ K + Y +AR GE + IF +
Sbjct: 213 DNK-KTYATYNFTTYDNELISKEFIKTQEEIYRDMPTYKARVLLGEWVASYDSIFTNINL 271
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRD 157
+ + G + ++
Sbjct: 272 TSNHEFKAPIAYLDPAYSI--GGDNTALCVLERVDQK 306
>gi|238923662|ref|YP_002937178.1| hypothetical protein EUBREC_1284 [Eubacterium rectale ATCC 33656]
gi|238875337|gb|ACR75044.1| Hypothetical protein EUBREC_1284 [Eubacterium rectale ATCC 33656]
Length = 429
Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/280 (14%), Positives = 83/280 (29%), Gaps = 38/280 (13%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPIIEHY 61
+ + NT + E E + E R ++T + L P +
Sbjct: 100 DGDEKLIKGNTYGMAYVTEANECHQKFLKEVFDRTLSSTDRKIFHDLNPKEEEHWYYTEI 159
Query: 62 LSASSSDRQ--------VIRMTINETPHYNEQERKRIIDSYPL--HEREARTKGEPILGS 111
L + T+ + ++++ + ++ +Y + KGE +
Sbjct: 160 LKFHEEQQANDENYGYNYGHFTLVDNMSMSDEKIRTVLKTYQKGTVWYKRDIKGERAVAE 219
Query: 112 GRIFPIVEE------------DIVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDS 158
G IF +E + P I GMDFG + ++ R
Sbjct: 220 GIIFRKFKENNIPYLCDDSILKYNKDGELFPRPSKVIIGMDFGGNGSMTTMVCSLYFRGY 279
Query: 159 DVIYVVKNYRCREQTPIFHVAAL--KSWGKWLPWAWPHDGLQHDKRSGE------QLSAQ 210
IY V+ E +P + K + A ++ + L +
Sbjct: 280 HFIYPVEEDYL-ELSPDIDANNICDKYIEFYRRCAAKYERIDWTFPDSASTTMINSLRSA 338
Query: 211 YRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
++ G++ N + + + +GR KV
Sbjct: 339 AKKDGLRY---DHIAGCRKNEISERPRTVDLLLNTGRMKV 375
>gi|284007216|emb|CBA72504.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 441
Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/177 (8%), Positives = 44/177 (24%), Gaps = 16/177 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPP-------EDVYFEGLTRI-NATQGLVTLTLTPLK 52
A + + + + DE E+V+ + + T+G + TP
Sbjct: 111 FWALNDNKLAGRGREYNRILIDEAAFTKNKEMLEEVWPKAIKPTLLTTKGGADVFSTPNG 170
Query: 53 GRS-PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILG 110
+ S V+ + P + E + + + + E
Sbjct: 171 IDDENFFYAICNDPSLGFNVLHAPTAKNPFIPQSELDKEKEDNDPRVYQQEFEAEFIDWS 230
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVWNRDSDVI 161
+ + + + ++ P + + + + +
Sbjct: 231 DAALLDVNKMLVEGEPVEPPTTCDLVFAVMDTALKGGTENDGTGVVFFAYEETYEEP 287
>gi|49823279|gb|AAT68704.1| hypothetical protein [Borrelia hermsii]
Length = 397
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 19 VWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS-SSDRQVIRMT 75
+W +E + + G + ++ P+ + + Y++ + VI+ T
Sbjct: 123 LWLEEANQFTESDIERLIPTMRERGGRIYMSSNPVPRSHWLYKRYIANEDNPAVCVIKST 182
Query: 76 INETPHYNEQERKRIIDSYPLHE------REARTKG-EPILGSGRIFPIVE 119
+ P N + ++ L G E G+ +++ +
Sbjct: 183 YRDNPFLNGGDVDSWLEKQRLAYHGNDIGFRIEVLGEEFDFGTAKVYQNFD 233
>gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
85-1]
Length = 440
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/208 (10%), Positives = 55/208 (26%), Gaps = 8/208 (3%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 89 KSLEG--ISVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 146
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVEEDIVI 124
D + ++ +E P ++ K I + + +G P +
Sbjct: 147 EDTLIRKINYDENPFLSDTMLKVIEAAKRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 206
Query: 125 NSLDIPEHWVQIGGMDFGWH--HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK 182
++ G G+ A R V+Y ++ +E +
Sbjct: 207 VDAHKVLNFEPSGRKRIGFDVADSGADKCANVYRHGSVVYWADEWKAKEDELLKSCQRTY 266
Query: 183 SWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
+D + +G + +
Sbjct: 267 QAALERDADIVYDSIGVGASAGAKFAEI 294
>gi|219873383|ref|YP_002477648.1| phage terminase, large subunit, pbsx family [Borrelia garinii
Far04]
gi|219694616|gb|ACL35135.1| phage terminase, large subunit, pbsx family [Borrelia garinii
Far04]
Length = 267
Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ E + R+ + ++ P ++
Sbjct: 158 KIRGGNSAIIYVNEATVIHKETLLEAIKRLRKGKAIIIFDTNPESPTHFFKTDFIENK-D 216
Query: 68 DRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSG 112
+ T + P + + + + + + GE IL
Sbjct: 217 VFKTYNFTTYDNPLNSADFIETQKKLYKHLPAYKARVLYGEWILNES 263
>gi|292496014|gb|ADE29115.1| terminase [uncultured virus]
Length = 254
Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 21/202 (10%)
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + V+ + + PH + + + P R+ +G+ + IF +
Sbjct: 1 MYEADDRLAVVGVPTSANPHTPDDYKDAMAADMPEEIRQQEVEGKFVEIGAGIFTLDMMT 60
Query: 122 I-VINSLDIPEHWVQIGGMDFGW-----------HHPFAAGHLVWNRDSDVIYVVKNYRC 169
+D I G+D +A + + IYV+ R
Sbjct: 61 YTHTTEMDESWXMNYILGVDPASXADEQQARETDSDYWAICLIGVRPTTGEIYVIDQKRK 120
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
R T ++ + + +P + + +S L + +G+ P +T D
Sbjct: 121 RGMTXREGISWISNTASQVP---APELIIESNQSQRWLQQELASEGLNTTPVQSTRDKED 177
Query: 230 NGVEAGISDMLDRMRSGRWKVF 251
++ I + + R +F
Sbjct: 178 KLIDXSIP-----LENDRI-IF 193
>gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024]
Length = 460
Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 14/162 (8%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ +W +E ++ + I + + P + + ++++ D V
Sbjct: 113 IDILWLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 74 MTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVE------EDIVIN 125
+ NE P +E K I + E G P G + ++ +
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKL 232
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNY 167
+ + A + +VI V +
Sbjct: 233 GWEPAGSKRIGFDVADDGDDANATTLMH----GNVIMEVDEW 270
>gi|167907351|ref|ZP_02494556.1| hypothetical protein BpseN_34295 [Burkholderia pseudomallei NCTC
13177]
Length = 490
Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/238 (11%), Positives = 52/238 (21%), Gaps = 20/238 (8%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
D + + + E V+ ++ G TP ++
Sbjct: 124 NYDNYVGSPPAGIVLSEWALCNPAVWAYLKPILDENGGWAAFITTPRGKNHAHKMLQMAL 183
Query: 65 SSSDRQVI--------RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS----- 111
++ R ++ E + R + E
Sbjct: 184 ANPKWFAEVSNVLKTGRFSLAELEEQRAEYRALYGEEQGDAMFEQELMCSFEAAILGAYY 243
Query: 112 GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
G+ E D I + + I D G + + I ++ +YR
Sbjct: 244 GKEMAAAERDGRIGRVPHDPNLPVITVWDLGHSDDTSIWFAQVHW--GEIRLIDHYRASG 301
Query: 172 QTPIFHVAALKSWG---KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Q + AL + E R G P A
Sbjct: 302 QGLQHYAEALSGRKIVVDERGEKGEPTRWHYGDVIPEHAHRIAYRYGRHWGPHDARPK 359
>gi|126443353|ref|YP_001063348.1| hypothetical protein BURPS668_A2354 [Burkholderia pseudomallei 668]
gi|126222844|gb|ABN86349.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
Length = 490
Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/238 (11%), Positives = 52/238 (21%), Gaps = 20/238 (8%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
D + + + E V+ ++ G TP ++
Sbjct: 124 NYDNYVGSPPAGIVLSEWALCNPAVWAYLKPILDENGGWAAFITTPRGKNHAHKMLQMAL 183
Query: 65 SSSDRQVI--------RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS----- 111
++ R ++ E + R + E
Sbjct: 184 ANPKWFAEVSNVLKTGRFSLAELEEQRAEYRALYGEEQGDAMFEQELMCSFEAAILGAYY 243
Query: 112 GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
G+ E D I + + I D G + + I ++ +YR
Sbjct: 244 GKEMAAAERDGRIGRVPHDPNLPVITVWDLGHSDDTSIWFAQVHW--GEIRLIDHYRASG 301
Query: 172 QTPIFHVAALKSWG---KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
Q + AL + E R G P A
Sbjct: 302 QGLQHYAEALSGRKIVVDERGEKGEPTRWHYGDVIPEHAHRIAYRYGRHWGPHDARPK 359
>gi|78213224|ref|YP_382003.1| hypothetical protein Syncc9605_1699 [Synechococcus sp. CC9605]
gi|78197683|gb|ABB35448.1| hypothetical protein Syncc9605_1699 [Synechococcus sp. CC9605]
Length = 524
Score = 55.6 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/313 (12%), Positives = 72/313 (23%), Gaps = 85/313 (27%)
Query: 10 KWQSNTVHYVWFDEEPPEDVYFEGLT-----RINATQG--LVTLTLTPLKGRSPIIEHY- 61
K Q + ++++DE E L R T PL S I Y
Sbjct: 120 KIQGEDLSHIFWDELGQEADPQVVLRARSSMRTTDPTVVPKFIATANPLGPGSWWIRDYV 179
Query: 62 LSASSSDRQV------------IRMTINETPH--YNEQERKRIIDSYPLHERE--ARTKG 105
++ + +R I+ T+ + P+ +Q + + S E + A G
Sbjct: 180 VTKALPNRIFNCEFFGAQPAVWIKSTLRDNPYLSNPDQYEQELRASCFGDESKIAAEVLG 239
Query: 106 EPILGS----------------GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAA 149
E + G D + G D+G P
Sbjct: 240 EWGQVTAGFFGSALSLDRNMLPGDFQVPWPSDSDGVFRHETKAKWCWVGGDWGTASPACV 299
Query: 150 GHLVWNRD----------SDVIYVVKNYR---------------CREQTPIFHVAALKSW 184
+ ++ + R T V +
Sbjct: 300 VLMCQIQEPMTIAGKHLPRGSWVCIDEEYVCSIQPDGSKEWNRGDRSLTAPIFVERVMKL 359
Query: 185 GKWL---------PWAWPHDGLQHDKRSG-----EQLSAQYRRQGMKMLPECATFDDGSN 230
+ + G LS ++R+ G + +
Sbjct: 360 YQRHGFPQGAIPARRTIMDSAVTAQLGFGGYKDPVTLSTEFRKYGWNVTGSPKS------ 413
Query: 231 GVEAGISDMLDRM 243
G M +
Sbjct: 414 SRAVGWQLMKSLL 426
>gi|167647445|ref|YP_001685108.1| hypothetical protein Caul_3483 [Caulobacter sp. K31]
gi|167349875|gb|ABZ72610.1| protein of unknown function DUF264 [Caulobacter sp. K31]
Length = 453
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 21/192 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPP------EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
+ + TV++ W DE D + ++ + +T TP K + I +
Sbjct: 150 NPEDIRGPTVNWAWADELVKWRSEKSWDNLNRCVRNLHENGTKIIVTTTPKKAKQWIKD- 208
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIV 118
S V R + + PH + + R GE I G G ++
Sbjct: 209 --IESLPGTIVSRASSLDNPHMDAAYLEGIRREAETGSARAREEIFGEWIEGDGELWTEK 266
Query: 119 EEDIVINSL--------DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
+ + + G H + + + +YV+ ++
Sbjct: 267 SIEEMRQRPSVSLEVMAKSMDRRYISVDPSSGKHDETGIMLMG--KKAGRVYVLADFTSG 324
Query: 171 EQTPIFHVAALK 182
+ ++
Sbjct: 325 GNINQWTDEIVQ 336
>gi|225733941|pdb|2WBN|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1
gi|225733955|pdb|2WC9|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1 With Bound Mn
Length = 212
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 12/136 (8%)
Query: 110 GSGRIFPIV--EEDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKN 166
GSG + E+ +I ++ G+DFG+ P A +++ + IY +
Sbjct: 24 GSGVVPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDKRKNRIYAIDE 83
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + ++ + + D + A G+
Sbjct: 84 LVDHKVSLKRTADFVRKNK------YESARIIADSSEPRSIDALKLEHGIN---RIEGAK 134
Query: 227 DGSNGVEAGISDMLDR 242
G + VE G + +
Sbjct: 135 KGPDSVEHGERWLDEL 150
>gi|58039664|ref|YP_191628.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
gi|58002078|gb|AAW60972.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
Length = 437
Score = 55.2 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 36/235 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLV---TLTLTPLKGRSPIIE 59
EQ +K V+ +E LTR+ GL + P +
Sbjct: 112 EQRTEKILGLEFATVYLNEASQISYGARNMLLTRLAQKTGLAVKEYIDANPPSMGHWLYA 171
Query: 60 HYLSASSSDR------QVIRMTINETPHYNEQ----ERKRIIDSYPLHEREARTKGEPI- 108
+ S + + T+ P N + +++ P E+ GE
Sbjct: 172 LFESGIEPKSGEPLADRSLYATMILNPQANRDNLSEDYLASLEALPEREKRRFLYGEYQS 231
Query: 109 LGSGRIFPIVEEDI--------------VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVW 154
+ G ++ + + + + G +
Sbjct: 232 VVEGALWRLELFQREAAITAQSRADVAARMRRILVSVDPSGAAGPEDYRSDEIGIVVCGI 291
Query: 155 NRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA 209
+ V +V+++ R+ + AL+++ + W + + ++ G L
Sbjct: 292 DAAG-VGHVLEDLSARDSPAGWAARALRAFDE-----WGAERIVAERNFGGALVE 340
>gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8]
gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1]
gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1]
Length = 460
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ +W +E ++ + I + + P + + ++++ D V
Sbjct: 113 IDILWLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDAFVKM 172
Query: 74 MTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ NE P +E K I + E G P G + ++ +
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDKDQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKL 232
Query: 132 HWVQIGGMDFGWH 144
W G G+
Sbjct: 233 GWEPAGSKRIGFD 245
>gi|62327245|ref|YP_223983.1| terminase [Phage phiJL001]
gi|50059563|gb|AAT69535.1| terminase [Phage phiJL001]
Length = 509
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/321 (12%), Positives = 79/321 (24%), Gaps = 80/321 (24%)
Query: 1 LKAYEQGRD--KWQSNTVHYVWFDEEPPE---DVY--FEGLTRINATQG--LVTLTLTPL 51
+ + + D K+ ++ +DE + Y R T P
Sbjct: 114 FRQFNKPIDYWKYHGQEFQFIGWDELTNWPTLEGYTSMMSCLRTTHPDIPLRCRATTNPY 173
Query: 52 KGRSPIIEHYLSASSSD------------------------RQVIRMTINETPHYNEQER 87
+++ + + D R I+ TI E + +
Sbjct: 174 GPGHNVVKFHFELPAKDGIIRRKTYEFEDPETGEPIRKQLCRVAIKGTIWENTILLKAQP 233
Query: 88 KRI----IDSYPLHEREARTKGEPI-LGSGRIFPIVEEDIV-INSLDIPEHWVQIGGMDF 141
I + + A +G + G + + I + IP W D+
Sbjct: 234 NYIAQLKEQADNPAKLAAWLEGSWDIVAGGMFDDVWDPKINVVQRFIIPRSWKLDRSFDW 293
Query: 142 GWHHPFAAGHLV--------------WNRDSDVIYVVKNYRCR--------EQTPIFHVA 179
G PF+ G + +Y V + + +
Sbjct: 294 GSSAPFSVGWWAESDGSDFQDSEGRWRSSVRGDLYRVAEWYGWRNRPNEGLKMLAVDIAK 353
Query: 180 ALKSWGK-----WLPWAWPHDGLQHDKRSGEQLSAQY----------RRQGMKMLPECAT 224
++ P D +D +G + A ++G+
Sbjct: 354 GIREREMILFPTRTVQPGPADSSIYDVENGVSIGADMEKKIRMEDGSMKKGIVWTRAD-- 411
Query: 225 FDDGSNGVEAGISDMLDRMRS 245
+ + G M MR
Sbjct: 412 --KRAGSRKTGWEMMRKMMRD 430
>gi|29566981|ref|NP_818544.1| gp6 [Mycobacterium phage Barnyard]
gi|29425706|gb|AAN02060.1| gp6 [Mycobacterium phage Barnyard]
Length = 581
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/285 (11%), Positives = 70/285 (24%), Gaps = 63/285 (22%)
Query: 8 RDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
++ + V +E + V+ + + G T +G++ + + A
Sbjct: 153 PERLVGEGLTGVHMEEAAKQKEVVWKQMIMPTLMDFGGWAKFTTTPEGKNWYYDLHQKAL 212
Query: 66 SS---DRQVIRMTINETPHYN-------------------------EQERKRIIDSYPLH 97
+ R+ PH + KR++ +
Sbjct: 213 RPSTLNWSAHRIPSWRNPHVYTETGRLIAAGKLPKDTPIPPHEFTIDAHVKRLMYLMAEN 272
Query: 98 EREARTK-----------GEPILGSGRIFPIVEEDIVINSLD------------------ 128
+ G L + + P ++I D
Sbjct: 273 PGYTSFEIAKSERLQIDSGVLQLANDQTIPEFNQEIAAEFTDFVGKVFKEYDEDTHVREL 332
Query: 129 ---IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
+ W I +D+G+ +P + I +V + TP + G
Sbjct: 333 VYNPSQDWETIAAVDYGYRNPNVWLLIQIGP-WGEINIVDELYQADLTPTEFANEILRRG 391
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ L +R+ G + T D N
Sbjct: 392 LCPDTLHSFYADPAAPEASRTLETIFRQHGKRARSRPHTGGDIDN 436
>gi|194434522|ref|ZP_03066781.1| conserved hypothetical protein [Shigella dysenteriae 1012]
gi|194417234|gb|EDX33344.1| conserved hypothetical protein [Shigella dysenteriae 1012]
gi|332093143|gb|EGI98204.1| hypothetical protein SD15574_1959 [Shigella dysenteriae 155-74]
Length = 442
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 40/158 (25%), Gaps = 16/158 (10%)
Query: 13 SNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL-KGRSPIIEHYLS 63
H V DE E+++ + +G + TP S
Sbjct: 123 GRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICH 182
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDI 122
S + + P+ ++E + + E + + + +
Sbjct: 183 DESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWSKDALLDVDKLLV 242
Query: 123 VINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+++P + I + + + +
Sbjct: 243 DGQPIEMPPYCDMIFAVMDTALKGGTENDGTGVLYFAY 280
>gi|56561225|ref|YP_161612.1| hypothetical protein BGP326 [Borrelia garinii PBi]
gi|52696857|gb|AAU86177.1| hypothetical protein BGP326 [Borrelia garinii PBi]
Length = 284
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCAQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIF 115
+ + + T + +++ K Y +AR GE I + IF
Sbjct: 213 DN-VATFKTYKFTTYDNILLSKEFIKTQEKLYKDIPAYKARVLLGEWIASTDSIF 266
>gi|282851304|ref|ZP_06260669.1| phage terminase, large subunit, PBSX family [Lactobacillus gasseri
224-1]
gi|282557272|gb|EFB62869.1| phage terminase, large subunit, PBSX family [Lactobacillus gasseri
224-1]
Length = 435
Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/255 (13%), Positives = 68/255 (26%), Gaps = 29/255 (11%)
Query: 19 VWFDEEPPE---DVYFEGLT------RINATQGLVTLTLTPLKGRSPIIEHY--LSASSS 67
VW++E DV+ + Q V ++ P + + + +
Sbjct: 131 VWYEEFANLKNADVFDQATPTFIRQKPDFVDQVKVYISYNPPRNPYAWVNEWITQHETDP 190
Query: 68 DRQVIRMTINE--TPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + T + +Q+ I GE + ++ + +V
Sbjct: 191 DYFIDTSTYLDDKLGFTTKQQLNLIETYKRNDPDYYRWLYLGEAVGLGTNVYNMDLFKLV 250
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
D GMD G+ A + +V + Y R+ +
Sbjct: 251 DKLPDDEYITEVFYGMDTGFMVSATACVACAFTNKYNVYVLDTFYYDPTKYVRKLSASEQ 310
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGE-QLSAQYRRQGMKMLPECATFDDGSNGVEAG- 235
+ + + + S + + QY + EA
Sbjct: 311 AERVHDFINEITNKYGMLPYNQTIDSADGGIYTQY------WQMYNTQWSKVHKSSEAAM 364
Query: 236 ISDMLDRMRSGRWKV 250
I + D + GR V
Sbjct: 365 IDRVQDLLAQGRLFV 379
>gi|58040880|ref|YP_192844.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
gi|58003294|gb|AAW62188.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
Length = 435
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 64/273 (23%), Gaps = 40/273 (14%)
Query: 9 DKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQG---LVTLTLTPLKGRSPIIEHYLS 63
+K V+ +E LTR+ + P + +
Sbjct: 114 EKILGLEFATVYMNEASQISYAARNMLLTRLAQKTCLSVKEYIDANPPTTSHWLYSLFEQ 173
Query: 64 ASSS----------DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
D +++ + E +++ P ER+ G
Sbjct: 174 KIEPKSGEPLPYPDDYATMQINPDSNRANLSPEYLAQLEALPEKERQRFLFGNYQTAIDG 233
Query: 114 IFPIVEEDIV---------------INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS 158
++ + + + G + +RD
Sbjct: 234 ALWTLDRIRRLAQVTNETRAAVLADMRRIVVSVDPSGCSGNEDYKSDEIGISVCGIDRDG 293
Query: 159 DVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKM 218
+ CR + A+ + W D + +K G + Q R ++
Sbjct: 294 NGHVFAD-LTCRAGPAGWAKVAIDAMD-----LWGADRIVAEKNFGGAMVEQTIRS-VRA 346
Query: 219 LPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
S G A + G KVF
Sbjct: 347 TAPVKLVT-ASRGKTARAEPIAALYEQG--KVF 376
>gi|318040957|ref|ZP_07972913.1| hypothetical protein SCB01_04584 [Synechococcus sp. CB0101]
Length = 501
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/319 (12%), Positives = 75/319 (23%), Gaps = 88/319 (27%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFEGLT-----RINATQG--LVTLTLTPLKGRSPIIE 59
G +K Q + +V++DE E L R T PL S I
Sbjct: 114 GFNKIQGEDLSHVFWDELGQEADPQVVLRVRSSMRTTDPSVVPKFVATANPLGPGSWWIR 173
Query: 60 HY-LSASSSDRQV------------IRMTINETPH--YNEQERKRIIDSYPLHERE--AR 102
Y ++ + +R ++ T+ + P+ +Q + S E + A
Sbjct: 174 DYVVTKALPNRIFKCEFFGGGECCWVKSTLRDNPYLSNPDQYEAELKASCFGDESKIAAE 233
Query: 103 TKGEPILGS----------------GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP 146
G+ + G + + + G D+G P
Sbjct: 234 VYGDWGQVTAGFFGSCLSIERSMLPGGLTLPYQGVDGSVIRREHQSRWCWLGCDWGTASP 293
Query: 147 FAAGHLVWNRD-----------SDVIYVVKNYR---------------CREQTPIFHVAA 180
A +V D + R T +
Sbjct: 294 ACAVLMVEVVDDWIELGGKVIPRGSWICLDEAYICSIQPDGSKEWNRGDRSLTTQRFASR 353
Query: 181 LKSWGKWLPWAWPHDGLQHD----------------KRSGEQLSAQYRRQGMKMLPECAT 224
+ + G + + L+ + R G ++ +
Sbjct: 354 VGGLLSHYGMSLADVGKRRTIMDSAVTAQLGYTQEGWDAPVTLANDFARYGFQVTGSPKS 413
Query: 225 FDDGSNGVEAGISDMLDRM 243
G M +
Sbjct: 414 ------SRAVGWQFMKQLL 426
>gi|315038684|ref|YP_004032252.1| phage terminase, large subunit, PBSX family [Lactobacillus
amylovorus GRL 1112]
gi|312276817|gb|ADQ59457.1| phage terminase, large subunit, PBSX family [Lactobacillus
amylovorus GRL 1112]
Length = 418
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 37/258 (14%)
Query: 19 VWFDEEPP---EDVYFEGLT------RINATQGLVTLTLTPL-KGRSPIIEHYLSASSSD 68
WF+E DV+ + + Q + ++ P + + E D
Sbjct: 114 CWFEEFANLKNVDVFDQSVPTFIRQKPDFTDQVKIYISYNPPRNPYAWVNEWVTQREVDD 173
Query: 69 RQVIRMTI---NETPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEEDIV 123
I + +E +Q+ K I GE + ++ + +V
Sbjct: 174 DYFIDSSTYLDDELGFTTKQQLKLINQYKKNDPDYYRWLYLGEAVGLGTNVYNMDLFKVV 233
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ D I G+D G+ A L + +V + Y R+ +
Sbjct: 234 DHIPDDEYLTDIIYGLDTGFMVSATACVALGFTNKYNVYVLDTFYYDPTKYARKLSAQEQ 293
Query: 178 VAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + + + + D G G+ S + G
Sbjct: 294 AERIHDFIDEMTNKYGLYPTNMTIDSADG----------GIYTQYWQMYSVQWSKVRKLG 343
Query: 236 ----ISDMLDRMRSGRWK 249
I + D + GR
Sbjct: 344 EPEMIDRVQDLLAQGRLF 361
>gi|294617241|ref|ZP_06696886.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E1679]
gi|291596491|gb|EFF27739.1| phage terminase, large subunit, pbsx family [Enterococcus faecium
E1679]
Length = 448
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 67/254 (26%), Gaps = 29/254 (11%)
Query: 19 VWFDEEP---PEDVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHY--LSASSS 67
+W++E E+V+ + R + Q V + P K + +
Sbjct: 144 LWYEEAANFESEEVFDQTNATFIRQRSPWVDQVQVYYSWNPPKNPYDWVNEWVEKCIRLD 203
Query: 68 DRQVIRMTINE--TPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D V T + + Q+ K I GE I I+ + +
Sbjct: 204 DHLVDHSTYKDDELGFTDPQQLKLIETYRENDEDYYRWLYLGEVIGLGTLIYNMDHFHPL 263
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
D +D G G + +VI + Y ++ P
Sbjct: 264 DELPDDDYIVQICFSIDSGHQISATTCGCYAITKKKNVILLDTYYYSPEGKVNKKAPDEL 323
Query: 178 VAALKSWGKWLPWAWPHDG--LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L + + + + D G + Y+ K
Sbjct: 324 SKDLHDFIERCQIKYNKYAYKITIDSAEGALKNQYYKDYNEKF----HAVAKAKK--VDM 377
Query: 236 ISDMLDRMRSGRWK 249
I + + + G++
Sbjct: 378 IDYVQNLLAQGKFF 391
>gi|16799183|ref|NP_469451.1| putative terminase large subunit from bacteriophage A118 [Listeria
innocua Clip11262]
gi|16412525|emb|CAC95338.1| putative terminase large subunit from Bacteriophage A118 [Listeria
innocua Clip11262]
Length = 443
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 71/254 (27%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHY--LSASSS 67
+WF+E DV + R + QG + ++ P + + Y S
Sbjct: 139 LWFEELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDD 198
Query: 68 DRQVIRMTINETP----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D + T + ++ L GE I ++ + +
Sbjct: 199 DYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPL 258
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ +D G L + +VI + Y ++ P +
Sbjct: 259 KAIPADDRLILIDFAIDTGHQVSATTCLALGFTAKRNVILLDTYYYSPANQVVKKAPSDY 318
Query: 178 VAALKSWGKWLPWAWPHDG--LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + D G + Y+ G+ + P G
Sbjct: 319 SKELREFMTKVVSKYNAPVGMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK--VDM 372
Query: 236 ISDMLDRMRSGRWK 249
+ + D + GR+
Sbjct: 373 VDFVCDLLAQGRFY 386
>gi|332089985|gb|EGI95085.1| hypothetical protein SB521682_2096 [Shigella boydii 5216-82]
Length = 442
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 40/158 (25%), Gaps = 16/158 (10%)
Query: 13 SNTVHYVWFDEEPP-------EDVYFEGLTRIN-ATQGLVTLTLTPL-KGRSPIIEHYLS 63
H V DE E+++ + +G + TP S
Sbjct: 123 GRKYHAVLIDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICH 182
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP-ILGSGRIFPIVEEDI 122
S + + P+ ++E + + E + + + +
Sbjct: 183 DESLGFVMHHAPTSSNPYIPKEELEETEKKSDPRVWQQEYLAEFVDWSKDALLDVDKLLV 242
Query: 123 VINSLDIPEHWVQIGGM------DFGWHHPFAAGHLVW 154
+++P + I + + + +
Sbjct: 243 DGQPIEMPPYCDMIFAVMDTALKGGTENDGTGVLYFAY 280
>gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN]
gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN]
Length = 460
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ +W +E ++ + I + + P + + ++++ D V
Sbjct: 113 IDILWLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 74 MTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ NE P +E K I + E G P G + ++ +
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKL 232
Query: 132 HWVQIGGMDFGWH 144
W G G+
Sbjct: 233 GWEPAGSKRIGFD 245
>gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1]
gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1]
Length = 460
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ +W +E ++ + I + + P + + ++++ D V
Sbjct: 113 IDILWLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 74 MTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ NE P +E K I + E G P G + ++ +
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKL 232
Query: 132 HWVQIGGMDFGWH 144
W G G+
Sbjct: 233 GWEPAGSKRIGFD 245
>gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2]
gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2]
Length = 460
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ +W +E ++ + I + + P + + ++++ D V
Sbjct: 113 IDILWLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 74 MTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ NE P +E K I + E G P G + ++ +
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKL 232
Query: 132 HWVQIGGMDFGWH 144
W G G+
Sbjct: 233 GWEPAGSKRIGFD 245
>gi|186701681|ref|ZP_02971379.1| phage terminase, large subunit, pbsx family [Ureaplasma parvum
serovar 6 str. ATCC 27818]
gi|186700935|gb|EDU19217.1| phage terminase, large subunit, pbsx family [Ureaplasma parvum
serovar 6 str. ATCC 27818]
Length = 481
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 49/281 (17%)
Query: 14 NTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +F+E D + L TQ + P IE++ + + +
Sbjct: 134 ARYVFAFFEEASQLDFNLVKNSQQSLRGTKDTQVVSIFASNPWTSEHWYIENFNNHLAEN 193
Query: 69 RQVIR-----------------MTINETPHYNEQERKRIIDSYPLHEREART--KGEPIL 109
I+ T ++QE ++ + + R G
Sbjct: 194 EFSIQQKPYYEYSVVDKKLFLRSTYRANKFTSQQEIEQFEWWKDIDYSKYRVISLGLSGS 253
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGG------MDFGWHHPFAAGHLVWNRDSDVIYV 163
G I+ + + + +Q G A ++++ + +
Sbjct: 254 VEGAIYARSLSVMHEPYGEYDNYAMQFFGGMDWGDGTSSSSSDTACLFGSISKENGIEIL 313
Query: 164 VKNYRCREQTPIFHVAAL---------KSWGKWLPWAWPHDGLQ------HDKRSGEQLS 208
+ P+ + K + D + ++++
Sbjct: 314 DEMVYNNNVNPLTSEQQIELVVRWFIKKQQEVNVKIVIYIDNAHLRYFYETFNATFKRIA 373
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
QY G +++ A + + + + + SG+ +
Sbjct: 374 FQYNMYGSELVFAPAI----KHAIWDRVVLVNYMLASGKLR 410
>gi|209554611|ref|YP_002284779.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|209542112|gb|ACI60341.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
Length = 481
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 49/281 (17%)
Query: 14 NTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +F+E D + L TQ + P IE++ + + +
Sbjct: 134 ARYVFAFFEEASQLDFNLVKNSQQSLRGTKDTQVVSIFASNPWTSEHWYIENFNNHLAEN 193
Query: 69 RQVIR-----------------MTINETPHYNEQERKRIIDSYPLHEREART--KGEPIL 109
I+ T ++QE ++ + + R G
Sbjct: 194 EFSIQQNPYYEYSVVDKKLFLRSTYRANKFTSQQEIEQFEWWKDIDYSKYRVISLGLSGS 253
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGG------MDFGWHHPFAAGHLVWNRDSDVIYV 163
G I+ + + + +Q G A ++++ + +
Sbjct: 254 VEGAIYARSLSVMHEPYGEYDNYAMQFFGGMDWGDGTSSSSSDTACLFGSISKENGIEIL 313
Query: 164 VKNYRCREQTPIFHVAAL---------KSWGKWLPWAWPHDGLQ------HDKRSGEQLS 208
+ P+ + K + D + ++++
Sbjct: 314 DEMVYNNNVNPLTSEQQIELVVRWFIKKQQEVNVKIVIYIDNAHLRYFYETFNATFKRIA 373
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
QY G +++ A + + + + + SG+ +
Sbjct: 374 FQYNMYGSELVFAPAI----KHAIWDRVVLVNYMLASGKLR 410
>gi|185178968|ref|ZP_02964725.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|195869132|ref|ZP_03004535.2| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|184209247|gb|EDU06290.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|195659634|gb|EDX53014.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
Length = 481
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 49/281 (17%)
Query: 14 NTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +F+E D + L TQ + P IE++ + + +
Sbjct: 134 ARYVFAFFEEASQLDFNLVKNSQQSLRGTKDTQVVSIFASNPWTSEHWYIENFNNHLAEN 193
Query: 69 RQVIR-----------------MTINETPHYNEQERKRIIDSYPLHEREART--KGEPIL 109
I+ T ++QE ++ + + R G
Sbjct: 194 EFSIQQKPYYEYSVVDKKLFLRSTYRANKFTSQQEIEQFEWWKDIDYSKYRVISLGLSGS 253
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGG------MDFGWHHPFAAGHLVWNRDSDVIYV 163
G I+ + + + +Q G A ++++ + +
Sbjct: 254 VEGAIYARSLSVMHEPYGEYDNYAMQFFGGMDWGDGTSSSSSDTACLFGSISKENGIEIL 313
Query: 164 VKNYRCREQTPIFHVAAL---------KSWGKWLPWAWPHDGLQ------HDKRSGEQLS 208
+ P+ + K + D + ++++
Sbjct: 314 DEMVYNNNVNPLTSEQQIELVVRWFIKKQQEVNVKIVIYIDNAHLRYFYETFNATFKRIA 373
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
QY G +++ A + + + + + SG+ +
Sbjct: 374 FQYNMYGSELVFAPAI----KHAIWDRVVLVNYMLASGKLR 410
>gi|13357727|ref|NP_078001.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|170762096|ref|YP_001752251.1| PBSX family phage terminase large subunit [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|198273674|ref|ZP_03206209.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|11356899|pir||G82926 hypothetical protein UU169 [imported] - Ureaplasma urealyticum
gi|6899131|gb|AAF30576.1|AE002116_13 unique hypothetical ATP/GTP-binding protein [Ureaplasma parvum
serovar 3 str. ATCC 700970]
gi|168827673|gb|ACA32935.1| phage terminase, large subunit, pbsx family [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|198249702|gb|EDY74483.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
Length = 481
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 49/281 (17%)
Query: 14 NTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +F+E D + L TQ + P IE++ + + +
Sbjct: 134 ARYVFAFFEEASQLDFNLVKNSQQSLRGTKDTQVVSIFASNPWTSEHWYIENFNNHLAEN 193
Query: 69 RQVIR-----------------MTINETPHYNEQERKRIIDSYPLHEREART--KGEPIL 109
I+ T ++QE ++ + + R G
Sbjct: 194 EFSIQQKPYYEYSVVDKKLFLRSTYRANKFTSQQEIEQFEWWKDIDYSKYRVISLGLSGS 253
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGG------MDFGWHHPFAAGHLVWNRDSDVIYV 163
G I+ + + + +Q G A ++++ + +
Sbjct: 254 VEGAIYARSLSVMHEPYGEYDNYAMQFFGGMDWGDGTSSSSSDTACLFGSISKENGIEIL 313
Query: 164 VKNYRCREQTPIFHVAAL---------KSWGKWLPWAWPHDGLQ------HDKRSGEQLS 208
+ P+ + K + D + ++++
Sbjct: 314 DEMVYNNNVNPLTSEQQIELVVRWFIKKQQEVNVKIVIYIDNAHLRYFYETFNATFKRIA 373
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
QY G +++ A + + + + + SG+ +
Sbjct: 374 FQYNMYGSELVFAPAI----KHAIWDRVVLVNYMLASGKLR 410
>gi|188024197|ref|ZP_02996911.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|189009908|ref|ZP_03004029.2| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|225551050|ref|ZP_03771996.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|188018845|gb|EDU56885.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997825|gb|EDU66922.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|225378865|gb|EEH01230.1| phage terminase, large subunit, pbsx family [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
Length = 481
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 49/281 (17%)
Query: 14 NTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ +F+E D + L TQ + P IE++ + + +
Sbjct: 134 ARYVFAFFEEASQLDFNLVKNSQQSLRGTKDTQVVSIFASNPWTSEHWYIENFNNHLAEN 193
Query: 69 RQVIR-----------------MTINETPHYNEQERKRIIDSYPLHEREART--KGEPIL 109
I+ T ++QE ++ + + R G
Sbjct: 194 EFSIQQKPYYEYSVVDKKLFLRSTYRANKFTSQQEIEQFEWWKDIDYSKYRVISLGLSGS 253
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGG------MDFGWHHPFAAGHLVWNRDSDVIYV 163
G I+ + + + +Q G A ++++ + +
Sbjct: 254 VEGAIYARSLSVMHEPYGEYDNYAMQFFGGMDWGDGTSSSSSDTACLFGSISKENGIEIL 313
Query: 164 VKNYRCREQTPIFHVAAL---------KSWGKWLPWAWPHDGLQ------HDKRSGEQLS 208
+ P+ + K + D + ++++
Sbjct: 314 DEMVYNNNVNPLTSEQQIELVVRWFIKKQQEVNVKIVIYIDNAHLRYFYETFNATFKRIA 373
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
QY G +++ A + + + + + SG+ +
Sbjct: 374 FQYNMYGSELVFAPAI----KHAIWDRVVLVNYMLASGKLR 410
>gi|206563738|ref|YP_002234501.1| putative phage terminase large subunit [Burkholderia cenocepacia
J2315]
gi|198039778|emb|CAR55749.1| putative phage terminase large subunit [Burkholderia cenocepacia
J2315]
Length = 436
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/250 (12%), Positives = 67/250 (26%), Gaps = 34/250 (13%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP-----PEDVYFEGLTRI--NATQGLVTLTLTPL-- 51
+ E G + + FDE ++Y + ++ + + TPL
Sbjct: 98 FWSLESGLFG-RGREYDLLLFDETAFTKDGTLEIYRDAISPVVATRPGFRMFSFSTPLVM 156
Query: 52 ------KGRSPIIEHYLSAS-----SSDRQVIRMTINETPHYNEQERKRIIDSYPLHERE 100
++ + +V P +++ +
Sbjct: 157 DLSNFFYALHEHKDYKWNPKIGADNYERFKVHHRPSWCNPLVDDKWLRGEYRKRSALSWR 216
Query: 101 ARTKGEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP-FAAGHLVWN--R 156
+GE +FP + + + + V M G H A L ++
Sbjct: 217 QEIEGEFVDWSGISLFPNLNKPVDPHPRYDAVFAVIDTAMKSGIEHDGTACMWLGYSDVF 276
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHD--------GLQHDKRSGEQLS 208
D ++++ + LK H DK+SG L
Sbjct: 277 GPDNLHILD-WEVTSLDASGQYDWLKRILNHGEALARHYKSHQGFTVAYIEDKQSGIVLL 335
Query: 209 AQYRRQGMKM 218
Q + G+ +
Sbjct: 336 QQGKESGLPV 345
>gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3]
gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3]
Length = 460
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 16 VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIR 73
+ +W +E ++ + I + + P + + ++++ D V
Sbjct: 113 IDILWLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 74 MTINETPHYNEQERKRII--DSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
+ NE P +E K I + E G P G + ++ +
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKL 232
Query: 132 HWVQIGGMDFGWH 144
W G G+
Sbjct: 233 GWEPAGSKRIGFD 245
>gi|312149784|gb|ADQ29854.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 304
Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I + + + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVRGDNTALCVMERVD 304
>gi|203288482|ref|YP_002223299.1| bsr protein [Borrelia duttonii Ly]
gi|201084467|gb|ACH94050.1| bsr protein [Borrelia duttonii Ly]
Length = 450
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 47/165 (28%), Gaps = 8/165 (4%)
Query: 6 QGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++++ + ++ +E ++ E L R+ + P Y+
Sbjct: 154 RDFERFRGSNSAVIYVNEATTLHKETLKEALKRLRIKPEFIVFDTNPDHPEHYFKTDYID 213
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEPILGSGRIFPIVEED 121
++ T + +++ K + Y + + GE + + I
Sbjct: 214 NNT-VYSTYNFTTYDNEEISKEFIKTQEELYKDFPTYKASVLLGEWVANNDAI---FRNI 269
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+I + + + L D ++ +
Sbjct: 270 NIIEDYEFKSPIAYLDPAYSSGGDNTSLCVLEKVSDKYYAFIFQE 314
>gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
Length = 466
Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 74/266 (27%), Gaps = 25/266 (9%)
Query: 8 RDKWQSNT-VHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ + + V + DE P+++Y+ + ++G +T TP R Y +
Sbjct: 125 EETIRGFSEVRLLVIDEAALVPDELYYAVRPMLAVSRGRLTALSTPAGKRGWFYHCY-TE 183
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVI 124
Q + + P + S P A E + ++FP
Sbjct: 184 GGDQWQRYTIPATQCPRISADFLAAEQRSLPAAWFRAEYFCEFGEAANQLFPAHLLQTAQ 243
Query: 125 NSL---------DIPEHWVQIGGMDFGWHHPFAAGHLVWN----RDSDVIYVVKNYRCRE 171
S P G+D G ++A ++ D
Sbjct: 244 CSQVSPLFAEITPSPPTGTFFIGLDLGQSQDYSALTIIHRSPALPDPPCHLRHLQRFPLR 303
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK-----MLPECATFD 226
V ++ + + G + + GM + A
Sbjct: 304 TPYPDIVRQVRELLQQPQIGPNPLLIVDKTGVGAPVVDMLTQAGMNPYAVTIHGGEAVSQ 363
Query: 227 DGSNGVE---AGISDMLDRMRSGRWK 249
+G + I+++ +++G K
Sbjct: 364 NGRDLRLPQRDLIANLQVALQTGSLK 389
>gi|195942758|ref|ZP_03088140.1| hypothetical protein Bbur8_08065 [Borrelia burgdorferi 80a]
Length = 312
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I + + + +
Sbjct: 270 NITDDYVFTSPIAYLDPAFSVRGDNTALCVMERVD 304
>gi|225621767|ref|YP_002724125.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547658|gb|ACN93635.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDNPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERK--RIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
++ + T + + + + + GE I I +
Sbjct: 213 DNTA-TFKTYNFTTYDNVLLGKGFIEPQEKLYKDIPTYKARVLLGEWIASIDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I + + G + +
Sbjct: 270 NITQDYVFSSPIAYLDPAFSVGGDNTALCVMERVD 304
>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 449
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHYLSAS 65
Q + W +E ++ + + I + ++ P + ++
Sbjct: 105 KSIQGVGI--CWVEEAEAVTKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYQRFIVHP 162
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSY---PLHEREARTKGEPILGS 111
D V++ + PH+ + + GEP+ S
Sbjct: 163 PKDSIVLKANYDINPHFADTPLLADMLECKERDEDLYRHIWLGEPVADS 211
>gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046]
gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046]
Length = 473
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 121 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 178
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 179 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 238
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + A + R V++ ++ +E
Sbjct: 239 VDAHKTLNFEPSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 290
>gi|260063417|ref|YP_003196497.1| terminase large subunit [Robiginitalea biformata HTCC2501]
gi|88782861|gb|EAR14035.1| terminase large subunit [Robiginitalea biformata HTCC2501]
Length = 481
Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/292 (13%), Positives = 78/292 (26%), Gaps = 55/292 (18%)
Query: 2 KAYEQGRDKW-------QSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLK 52
K+++ G+ + Y +F+E +V+ + R P
Sbjct: 139 KSFKIGKSRIFFLGDGKHGGGCDYAFFNEIMMQRREVFDQVEMRCR---IFWWCDYNPSF 195
Query: 53 GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEP--- 107
+ + SD +R T + P + E +I+ P + +G
Sbjct: 196 TDHWVFD--SVVPRSDTAFLRTTFKDNPFISPSELNKILSYEPWEPGTYQVTEEGVFYKG 253
Query: 108 --------------ILGSGRIFPIVEEDI--------------VINSLDIPEHWVQIGGM 139
+ G + I +D + I
Sbjct: 254 KPITETNQPPPHIRNVEQGTADEFNWKVYGLGLRGAMKGTIFPNITWIDAFPNMDYIYAN 313
Query: 140 DFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQ 198
DFG+ P A ++ D++ IY+ +TP AA ++ G P D
Sbjct: 314 DFGFTADPNALVR--YSEDANNIYIEPLIYKPIETPDELAAAFEALGVEKRKPIPCDSSD 371
Query: 199 HDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
+ + + GI + M+ + V
Sbjct: 372 KYTGENKGTVEMVQGLQDRGYRNAFKVSKKK-----GIMFWILSMKKKKIHV 418
>gi|30061789|ref|NP_835960.1| putative terminase large subunit [Shigella flexneri 2a str. 2457T]
gi|30040031|gb|AAP15765.1| putative terminase large subunit [Shigella flexneri 2a str. 2457T]
Length = 124
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 200 DKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ GEQL QY G ML E AT+ DG N VE GI+++ D M GR+KVF
Sbjct: 6 RRAGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVF 57
>gi|255026209|ref|ZP_05298195.1| putative terminase large subunit from bacteriophage A118 [Listeria
monocytogenes FSL J2-003]
Length = 305
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 68/254 (26%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPLKGRSPIIEHY--LSASSS 67
+WF+E DV + R + G + ++ P + + Y S
Sbjct: 1 MWFEELAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDD 60
Query: 68 DRQVIRMTINETP----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D T + ++ L GE I ++ + +
Sbjct: 61 DYLXHHTTYFDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPL 120
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ +D G +VI + Y ++ P +
Sbjct: 121 KAIPADDRLILIDFAIDTGHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKAPSEY 180
Query: 178 VAALKSWGKWLPWAWPH--DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + D D G + Y+ G+ + P G
Sbjct: 181 SKELRDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK--VDM 234
Query: 236 ISDMLDRMRSGRWK 249
I + D + GR+
Sbjct: 235 IDFVCDLLAQGRFY 248
>gi|297155840|gb|ADI05552.1| putative phage terminase [Streptomyces bingchenggensis BCW-1]
Length = 109
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 35 TRINATQGLVTLTLTPLKGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDS 93
R++ + P + + Y+ ++ + + +++ P + + +
Sbjct: 29 PRLSVPGARLYAATNPDSPQHWLKTGYVDRAAELNLRAWHFKLSDNPSLSPEYVADLAAE 88
Query: 94 YPLHEREARTKGEPILGSGRI 114
Y R G ++ G I
Sbjct: 89 YVGLWRRRMIDGAWVVAEGAI 109
>gi|203288734|ref|YP_002223670.1| bsr protein [Borrelia duttonii Ly]
gi|201084584|gb|ACH94162.1| bsr protein [Borrelia duttonii Ly]
Length = 330
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/151 (9%), Positives = 45/151 (29%), Gaps = 9/151 (5%)
Query: 6 QGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ ++++ + ++ +E ++ E L R+ + P Y+
Sbjct: 32 RDFERFRGSNSAVIYVNEATTLHKETLKEVLKRLRMKPEFIIFDTNPDHPEHYFKTDYID 91
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEPILGSGRIFPIVEED 121
++ T + +++ K + Y + + GE + + IF +
Sbjct: 92 NNT-VYSTYNFTTYDNETISKEFIKTQEEIYKDLPTYKASVLLGEWVANNDAIF----RN 146
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
I I + + + +
Sbjct: 147 INIIEDYEFKSPIAYLDPAYSSGGDNTVLCV 177
>gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 467
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 115 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 173 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 232
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + A + R V++ ++ +E
Sbjct: 233 VDAHKTLNFEPSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 284
>gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638]
gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638]
Length = 467
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 115 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 173 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 232
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + A + R V++ ++ +E
Sbjct: 233 VDAHKTLNFEPSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 284
>gi|46203226|ref|ZP_00208858.1| COG1783: Phage terminase large subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 219
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 13/153 (8%)
Query: 89 RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFA 148
+ GE S + + P G D+G+
Sbjct: 2 ERDRRRDPEKYAHIWLGEYQRNSEARVFRNWKV---EEFETPPDARFYYGADWGFSVDPT 58
Query: 149 AGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS 208
+ + +YV K W ++ D E +S
Sbjct: 59 VLVRAFV-EGRTLYVDAEVYQVGCEIDRTPDLFKKIEGSHRW-----PIRADSARPETIS 112
Query: 209 AQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+R G P+ + G+ VE GI +
Sbjct: 113 -YMQRHGF---PKLVPANKGAGSVEDGIEFLKS 141
>gi|308814529|ref|YP_003934803.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18]
gi|308206121|gb|ADO19520.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18]
Length = 610
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/288 (9%), Positives = 66/288 (22%), Gaps = 49/288 (17%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A T + +E + +
Sbjct: 296 DIWTAAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQ 355
Query: 107 PILGSGRIFPIVEEDIVIN---SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
SG + ++ I+ + + + +D +++
Sbjct: 356 FQGTSGTLISGMKLAIMDWIEVMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALHI 415
Query: 164 VK------NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLS-------- 208
+ + L + + + +G ++
Sbjct: 416 IDVTDEKWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLE 475
Query: 209 ------AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
GMK G S + D + + K+
Sbjct: 476 YENVICDSMIDLGMKQTRRTKPV---------GCSTLKDLIEKDKLKI 514
>gi|190573927|ref|YP_001971772.1| putative DNA packaging protein gp17 [Stenotrophomonas maltophilia
K279a]
gi|190011849|emb|CAQ45469.1| putative DNA packaging protein gp17 (terminase) [Stenotrophomonas
maltophilia K279a]
Length = 517
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 7/166 (4%)
Query: 84 EQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGW 143
++R ++ +P EA G+ + I L I D G
Sbjct: 279 AEQRDKMKREHPSTPEEAFQASTEGAYYGKEMASADSSGRITDLPINPQVPIHTFWDIGR 338
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL-PWAWPHDGLQHDKR 202
+ + + + V Y + LK G WPHDG D
Sbjct: 339 SDATSIWFM--QENGPWLDFVDFYENSGFGVAHYAKVLKERGYLYGKHYWPHDGANEDWS 396
Query: 203 SGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRW 248
+ E + G+K N + GI + + + R+
Sbjct: 397 ANENRVQVAAKLGVK----PVVVVPRINDITEGIDMVRNMLPRCRF 438
>gi|224534955|ref|ZP_03675523.1| conserved hypothetical protein [Borrelia spielmanii A14S]
gi|224513774|gb|EEF84100.1| conserved hypothetical protein [Borrelia spielmanii A14S]
Length = 285
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIF 115
+ + T + ++ + Y +AR GE I + IF
Sbjct: 213 DN-IATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASTDSIF 266
>gi|281356810|ref|ZP_06243301.1| protein of unknown function DUF264 [Victivallis vadensis ATCC
BAA-548]
gi|281316937|gb|EFB00960.1| protein of unknown function DUF264 [Victivallis vadensis ATCC
BAA-548]
Length = 417
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 64/265 (24%), Gaps = 29/265 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINAT---QGLVTLTLTPLKGRSPIIE 59
E+ DK ++F+E E + LTR+ + P
Sbjct: 112 EERADKILGKEFATIYFNECSELGFEAVSTALTRLAQRTALKNRAWFDCNPAGKSHWSYR 171
Query: 60 HYLSASSS----------DRQVIRMTINETP-HYNEQERKRIIDSYPLHEREARTKGEP- 107
++ + + + E + E + + +R +G
Sbjct: 172 LFIERRDPVSGLPLSFPDNYASMLLNPAENRENLPEGYLEETLAGLTERQRLRFQEGAWL 231
Query: 108 ILGSGRIFP---IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
SG ++ I + + G YV+
Sbjct: 232 DDLSGALWSTAMIERSRVEAAPSLERIVIGVDPAVTSGKDSDETGIVTAGRGADGHYYVL 291
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ-YRRQGMKMLPECA 223
+ CRE+ + + + D + + +G L R Q + +
Sbjct: 292 ADASCRERPAGWAA-----RVRDEYRRFRADRVVAEVNNGGDLVETVLRSQELDLPFRQV 346
Query: 224 TFDDGSNGVEAGISDMLDRMRSGRW 248
G + G+
Sbjct: 347 RAMRGKIARA---EPVAALYEQGKV 368
>gi|229142622|ref|ZP_04271101.1| hypothetical protein bcere0013_56780 [Bacillus cereus BDRD-ST26]
gi|228640838|gb|EEK97190.1| hypothetical protein bcere0013_56780 [Bacillus cereus BDRD-ST26]
Length = 306
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 32/256 (12%)
Query: 19 VWFDEEPPE------DVYFEGLTR--INATQGLVTLTLTPLK----GRSPIIEHYLSASS 66
+WF+E D+ + R I + V + P + + ++ A
Sbjct: 3 LWFEEAAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLD--SKAGD 60
Query: 67 SDRQVIRMTINETP--HYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEEDI 122
D + T + ++Q ++I + L GE I ++ +
Sbjct: 61 EDYFIHHSTYMDDKKGFLSQQMIRKIEKYKIHDLDYWRWMYGGEVIGLGDMVYNMNNFKK 120
Query: 123 VINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIF 176
+ + + + +D G + +VI + Y ++ P
Sbjct: 121 INQLPEDDDLILIDIAIDTGHQVSATTYLAFGLTKKGNVILLDTYYYSPENKVVKRAPSE 180
Query: 177 HVAALKSW--GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
A L + G + D D G + ++ G+++ P
Sbjct: 181 FSADLNKFVTGVTKEFGRYIDMQTIDSAEGGLRNQYFKDYGIRLHPIAKKRK------VE 234
Query: 235 GISDMLDRMRSGRWKV 250
I ++ D + GR+ +
Sbjct: 235 MIENVYDLLSQGRFFI 250
>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
Length = 432
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/195 (11%), Positives = 52/195 (26%), Gaps = 27/195 (13%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINAT------QGLVTLTLTPLKGRSP 56
+Q D S + + DE + + +RI + + T P K +
Sbjct: 111 DQNFDSLGSLEISGAFIDECNQITYKAWQIVKSRIRYKLNQYGIEPKMLGTCNPAK--NW 168
Query: 57 IIEHYLSAS-----SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS 111
+ + +D++ I+ + PH ++ + ++ G +
Sbjct: 169 VYAQFYLKDKNGTLDNDKKFIQALPTDNPHLPASYLTSLLSL-DENSKQRLYYGNWEYDN 227
Query: 112 GRIFPIVEEDIVINS---LDIPEHWVQIGGMD-FGWHHPFAAGHLVWNRDSDVIYVVKNY 167
I E I + FG VV+ +
Sbjct: 228 DPAKLIDYEKIQNCFTNTFIPFGEMYISADIARFGSDKMVICVWSG-------FRVVEIF 280
Query: 168 RCREQTPIFHVAALK 182
+ + A++
Sbjct: 281 SMAKSSITEIAEAVR 295
>gi|288904665|ref|YP_003429886.1| phage terminase, large subunit [Streptococcus gallolyticus UCN34]
gi|288731390|emb|CBI12942.1| putative phage terminase, large subunit [Streptococcus gallolyticus
UCN34]
Length = 463
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/284 (13%), Positives = 70/284 (24%), Gaps = 45/284 (15%)
Query: 8 RDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY---- 61
K + + DE D E R + T+ P PI E Y
Sbjct: 120 WKKALGSQFGCGYIDEINTADTDFVQESTMRCD----YWMCTMNPDDPTLPIYEQYINRF 175
Query: 62 -------------------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--RE 100
+ + + E ++++II++ +
Sbjct: 176 RALPEYEQDTPKEIQEELDKQPAQPEWTYWFFNFDHNAGLPEDKKQQIINTVAPGTKIYK 235
Query: 101 ARTKGEPILGSGRIFPIVEE---DIVINSLDIPEHWVQIGGMDFGWH----HPFAAGHLV 153
+ G G IF + E I + G+D + A
Sbjct: 236 NKILGLRGRSEGLIFSMFERQRNVITRKQAKSFSYAQFSCGVDTSYSEQSNDTIAFIFQG 295
Query: 154 WNRDSDVIYVVKNYRCREQT------PIFHVAALKSWGKWLPWAWPHDGLQH-DKRSGEQ 206
RD ++ + + + P V L + W + D
Sbjct: 296 ITRDGKLVTLAERVYNNKDLSGDKIAPSDTVELLHKFLDDCKDDWGFARRIYVDNADQAT 355
Query: 207 LSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
+ + L + + I+ M M+ G + V
Sbjct: 356 IMELRKYANKYGLLYEFMNANKKVKIIDRINLMASWMKQGYYFV 399
>gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
Length = 272
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/150 (8%), Positives = 37/150 (24%), Gaps = 12/150 (8%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 124 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 181
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 182 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 241
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFA 148
+ + + + A
Sbjct: 242 VDAHKTLNFEPSGRKRIGFDVADSGTDKCA 271
>gi|314121742|ref|YP_004063861.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7]
gi|313151499|gb|ADR32555.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7]
Length = 610
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/288 (9%), Positives = 66/288 (22%), Gaps = 49/288 (17%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A T + +E + +
Sbjct: 296 DIWTAAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQ 355
Query: 107 PILGSGRIFPIVEEDIVIN---SLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
SG + ++ I+ + + + +D +++
Sbjct: 356 FQGTSGTLISGMKLAIMDWIRSMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALHI 415
Query: 164 VK------NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLS-------- 208
+ + L + + + +G ++
Sbjct: 416 IDVTDEKWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLE 475
Query: 209 ------AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
GMK G S + D + + K+
Sbjct: 476 YENVICDSMIDLGMKQTRRTKPV---------GCSTLKDLIEKDKLKI 514
>gi|203288918|ref|YP_002223912.1| bsr protein [Borrelia duttonii Ly]
gi|201084425|gb|ACH94009.1| bsr protein [Borrelia duttonii Ly]
Length = 399
Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 46/165 (27%), Gaps = 8/165 (4%)
Query: 6 QGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ +++ + ++ +E ++ E L R+ + P Y+
Sbjct: 103 RDFKRFRGSNSAVIYVNEATTLHKETLKEALKRLRIKPEFIVFDTNPDHPEHYFKTDYID 162
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEPILGSGRIFPIVEED 121
++ T + +++ K + Y + + GE + + I
Sbjct: 163 KNT-IYSTYNFTTYDNEEISKEFIKTQEELYKDFPTYKASVLLGEWVANNDAI---FRNI 218
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+I D + + L D ++ +
Sbjct: 219 NIIEDYDFKSPIAYLDPAYSSGGDNTSLCVLEKVSDKYYAFIFQE 263
>gi|110804741|ref|YP_688261.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|110614289|gb|ABF02956.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
Length = 233
Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 121 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 178
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFP 116
+ ++ +E P ++ K I + + +G P
Sbjct: 179 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIR 230
>gi|203288843|ref|YP_002223837.1| bsr protein [Borrelia duttonii Ly]
gi|201084394|gb|ACH93979.1| bsr protein [Borrelia duttonii Ly]
Length = 450
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 46/165 (27%), Gaps = 8/165 (4%)
Query: 6 QGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ +++ + ++ +E ++ E L R+ + P Y+
Sbjct: 154 RDFKRFRGSNSAVIYVNEATTLHKETLKEALKRLRIKPEFIVFDTNPDHPEHYFKTDYID 213
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEPILGSGRIFPIVEED 121
++ T + +++ K + Y + + GE + + I
Sbjct: 214 KNT-VYSTYNFTTYDNEEISKEFIKTQEELYKDFPTYKASVLLGEWVANNDAI---FRNI 269
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+I + + + L D ++ +
Sbjct: 270 NIIEDYEFKSPIAYLDPAYSSGGDNTSLCVLEKVSDKYYAFIFQE 314
>gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
60-1]
Length = 441
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 89 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 146
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 147 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 206
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + A + R V++ ++ +E
Sbjct: 207 VDAHKTLNFEPSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 258
>gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G]
Length = 447
Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 95 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 152
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 153 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 212
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + A + R V++ ++ +E
Sbjct: 213 VDAHKTLNFEPSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 264
>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 449
Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 54/234 (23%), Gaps = 27/234 (11%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHYLSAS 65
Q V W +E ++ + + I + ++ P ++
Sbjct: 105 KSIQGVGV--CWVEEAEAVTKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYRRFIVHP 162
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSY---PLHEREARTKGEPILGSGRIFPIVE--- 119
D V++ + PH+ + + GEP+ S
Sbjct: 163 PQDSIVLKANYDINPHFADTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIE 222
Query: 120 ---EDIVINSLDIPEHWVQIGGMDFGWHHPFAAG--HLVWNRDSDVIYVVKNYRCREQTP 174
+ + + A H D ++
Sbjct: 223 AAIDAHEKLGFQAAGKRILGFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADKV- 281
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
L + + + + G + AQ+RR+ K+
Sbjct: 282 -----YLYAQEQDIDRIVYD-----NIGVGAGVKAQFRRKRGKVQTLGFNAGGA 325
>gi|126725398|ref|ZP_01741240.1| Putative large terminase [Rhodobacterales bacterium HTCC2150]
gi|126704602|gb|EBA03693.1| Putative large terminase [Rhodobacterales bacterium HTCC2150]
Length = 420
Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 54/257 (21%), Gaps = 25/257 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + + + T + +
Sbjct: 118 DPESLRGPQFDAAWVDELAKWKRAEEAWDQLQFGLRLRDAPRQIVTTTPR---NVAVLKD 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFP--- 116
V Y I R +GE G ++
Sbjct: 175 LMKQETTVVTSAPTKANRAYLAASFLEDIHRKFAGTRLGRQELEGELVEDAEGAMWTSSM 234
Query: 117 -IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCRE 171
D V + YV+++ +
Sbjct: 235 LEAGRIDEFPEFDRIVVAVDPPVTATSNSDLCGIVVVGACLQGPPQSWQAYVIEDCSIKG 294
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+ A +++W + D + + G L RQ ++P S
Sbjct: 295 TPNKWADAVIEAWQRH-----NADRIVAEVNQGGDLIETLLRQKAVLVP--YRAVRASRS 347
Query: 232 VEAGISDMLDRMRSGRW 248
+ + GR
Sbjct: 348 KSSRAEPVAALYEQGRV 364
>gi|299779112|ref|YP_003734306.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage IME08]
gi|298105841|gb|ADI55485.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage IME08]
Length = 611
Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/290 (10%), Positives = 65/290 (22%), Gaps = 55/290 (18%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A T + + + + E
Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV-- 164
SG + ++ I+ IPE+ + P +
Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEP---DPTHKYIASLDCSEGRGQDYHA 412
Query: 165 --------KNYRCRE--QTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLS----- 208
+ + L + + + +G ++
Sbjct: 413 LHIIDVTTDEWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYM 472
Query: 209 ---------AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ GMK G S + D + + K
Sbjct: 473 DLEYENVICDSMQDLGMKQTRRTKPV---------GCSTLKDLIEKDKLK 513
>gi|225386265|ref|ZP_03756029.1| hypothetical protein CLOSTASPAR_00008 [Clostridium asparagiforme
DSM 15981]
gi|225047637|gb|EEG57883.1| hypothetical protein CLOSTASPAR_00008 [Clostridium asparagiforme
DSM 15981]
Length = 458
Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/283 (12%), Positives = 71/283 (25%), Gaps = 45/283 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHY 61
E K + N+ E ++ E R + A + V L P R+ I Y
Sbjct: 126 EDSYKKIRGNSYGMWIATEINLHHDNTIKEAFNRQLAAKRLKVFWDLNPDNPRATIYSDY 185
Query: 62 LSAS---------SSDRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILG 110
+ + TI + + + + I Y + KG ++
Sbjct: 186 IDKYQRQADAGGFPGGYNYMHCTIYDNINITQDRLREIESRYDKNSIWYLRDIKGMRVVA 245
Query: 111 SGRIFPIVEEDIVIN------SLDIPEHWVQIGGMDFGWHH------PFAAG-------- 150
+G I+ +D + G+DFG A
Sbjct: 246 NGLIYRRFADDTSTKQYTFRIPEKPKDIMEINLGIDFGGSSSGHSFTATAITRGYHNVVA 305
Query: 151 ----HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQ 206
+ + + + F + +G + + Q
Sbjct: 306 LASEWIGCKDEMGNQIEIDPETLGNRFCDFCQKIISRYGY-ITAVYADSAEQTLIAGIRS 364
Query: 207 LSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
R+ G+ + + I+ M GR+
Sbjct: 365 ---SLRKHGLGWVRVENAL---KIEINDRINATAILMAQGRFF 401
>gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68]
Length = 399
Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 47 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 104
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE----- 119
+ ++ +E P ++ K I + + +G P +
Sbjct: 105 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAA 164
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + A + R V++ ++ +E
Sbjct: 165 VDAHKTLNFEPSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 216
>gi|265763445|ref|ZP_06092013.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_16]
gi|299145861|ref|ZP_07038929.1| putative phage terminase, large subunit, PBSX family [Bacteroides
sp. 3_1_23]
gi|263256053|gb|EEZ27399.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_16]
gi|298516352|gb|EFI40233.1| putative phage terminase, large subunit, PBSX family [Bacteroides
sp. 3_1_23]
Length = 525
Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/260 (10%), Positives = 67/260 (25%), Gaps = 24/260 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRSPII 58
+ +++ S+ + DE ++ R T + ++ + +
Sbjct: 161 DPNFERFGSSEYTIAFIDEVSEISERAIEVLFSRLRWRTAETFKTARMMMSTNPCINWVR 220
Query: 59 EHYLSA-------SSSDRQVIRMTINETP--HYNEQERKRIIDSYPLHEREARTKGEPIL 109
++ + ++ + P + + + RE G
Sbjct: 221 SRFVQDDEGNPVLCKEGEAYVPFSVFDNPDIQFVQTYVAALNKITDRATRERLLYGNWDF 280
Query: 110 GSG----RIFPIVEEDIVINSLD---IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ E +I L I G DF + L N + IY
Sbjct: 281 VDSNLMAAYWNFDGEKHLIERLREKVYDPMKPIISGWDFNVAPYMSEMELQINYEKKEIY 340
Query: 163 VVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS-AQYRRQGMKMLPE 221
+++ + + + L + H G L+ + +G+
Sbjct: 341 LLEENLGKPENKENNTPKLSQKIRDKHLQNQHIGGIIITGDPAGLARSTQTEEGVNNYTI 400
Query: 222 CATFDDGSNGVEAGISDMLD 241
+N + I +
Sbjct: 401 IVDNMK-NNVLRPRIKLLQK 419
>gi|238695317|ref|YP_002922510.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage JS10]
gi|220029453|gb|ACL78387.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage JS10]
Length = 611
Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/290 (10%), Positives = 65/290 (22%), Gaps = 55/290 (18%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A T + + + + E
Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV-- 164
SG + ++ I+ IPE+ + P +
Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEP---DPTHKYIASLDCSEGRGQDYHA 412
Query: 165 --------KNYRCRE--QTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLS----- 208
+ + L + + + +G ++
Sbjct: 413 LHIIDVTTDEWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYM 472
Query: 209 ---------AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ GMK G S + D + + K
Sbjct: 473 DLEYENVICDSMQDLGMKQTRRTKPV---------GCSTLKDLIEKDKLK 513
>gi|281600057|gb|ADA73041.1| putative bacteriophage protein [Shigella flexneri 2002017]
Length = 233
Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 121 KSLEG--IDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 178
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFP 116
+ ++ +E P ++ K I + + +G P
Sbjct: 179 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIR 230
>gi|161622599|ref|YP_001595293.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage JS98]
gi|52139922|gb|AAU29292.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage JS98]
Length = 611
Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/290 (10%), Positives = 65/290 (22%), Gaps = 55/290 (18%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A T + + + + E
Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV-- 164
SG + ++ I+ IPE+ + P +
Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEP---DPTHKYIASLDCSEGRGQDYHA 412
Query: 165 --------KNYRCRE--QTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLS----- 208
+ + L + + + +G ++
Sbjct: 413 LHIIDVTTDEWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYM 472
Query: 209 ---------AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ GMK G S + D + + K
Sbjct: 473 DLEYENVICDSMQDLGMKQTRRTKPV---------GCSTLKDLIEKDKLK 513
>gi|313649580|gb|EFS14005.1| hypothetical protein SF2457T_1962 [Shigella flexneri 2a str. 2457T]
Length = 227
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 115 KSLEG--IDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFP 116
+ ++ +E P ++ K I + + +G P
Sbjct: 173 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIR 224
>gi|257898393|ref|ZP_05678046.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|257836305|gb|EEV61379.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length = 441
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 68/254 (26%), Gaps = 29/254 (11%)
Query: 19 VWFDEEP---PEDVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHY--LSASSS 67
+W++E E+V+ + R + Q V + P K + + +
Sbjct: 137 LWYEEAANFESEEVFDQTNATFIRQRSPWVDQVQVYHSWNPPKNPYDWVNEWVEKCMRLN 196
Query: 68 DRQVIRMTINE--TPHYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPIVEEDIV 123
D V T + + Q+ K I GE I I+ + +
Sbjct: 197 DHLVDHSTYKDDELGFTDPQQLKLIETYRANDEDYYRWLYLGEVIGLGTLIYNMDHFHPL 256
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
D +D G G + +VI + Y ++ P
Sbjct: 257 DELPDDDYIVQICFSIDSGHQISATTCGCYAITKKKNVILLDTYYYSPEGKVNKKAPDEL 316
Query: 178 VAALKSWGKWLPWAWPHDG--LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L + + + + D G + Y+ +
Sbjct: 317 SKDLHDFIERCQTKYNKYAYKITIDSAEGALKNQYYKDYNERF----HAVAKAKK--VDM 370
Query: 236 ISDMLDRMRSGRWK 249
I + + + GR+
Sbjct: 371 IDYVQNLLAQGRFF 384
>gi|237667848|ref|ZP_04527832.1| phage terminase, large subunit, pbsx family [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|237656196|gb|EEP53752.1| phage terminase, large subunit, pbsx family [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 458
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/280 (14%), Positives = 75/280 (26%), Gaps = 40/280 (14%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPIIEHYLS 63
K + N+ E ++ E R A + + L P + I + Y+
Sbjct: 125 SYKKIRGNSYGMWIATEINLHHDNTIKEAFNRTIAANKRKIFWDLNPDNPNATIYKEYID 184
Query: 64 ASSS---------DRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSG 112
+ TI++ + +E+ R I Y KG + G
Sbjct: 185 KYAKKAKEGTLLGGYNYQHFTIDDNINISEERRNEIKSQYDPDSIWYMRDIKGLRCIAEG 244
Query: 113 RIFPIV-------EEDIVINSLDIPEH-WVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYV 163
I+ + + I + G+DFG + + D + V
Sbjct: 245 LIYKRFANDSSVHNCKHYMVTEYILNNLEKINIGVDFGGNGSGHSFICTGITYDYKHVVV 304
Query: 164 VKNYR----------CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG---EQLSAQ 210
+ + R E+ V +K D D L
Sbjct: 305 LGSERWLEGENCNDVDPEELGRLFVEFVKRMNNKWGKYATIDYAYMDNAETVLIRGLRTS 364
Query: 211 YRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
+ G+ + A + + I M GR+ +
Sbjct: 365 CEKAGLDITVRNAI----KSSINDRIRCTCFLMAQGRFYI 400
>gi|311992925|ref|YP_004009792.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj61]
gi|295815214|gb|ADG36140.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj61]
Length = 611
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/283 (10%), Positives = 70/283 (24%), Gaps = 37/283 (13%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
AY D + N+ ++ DE + + + + +T TP G +
Sbjct: 237 AYASSPDAVRGNSFSLIYIDEVAFVQNWEDCWLAIQPVISSGRHSKIVMTTTPN-GMNHF 295
Query: 58 IEHYLSASSSDRQVIRMT----------INETPHYNE--QERKRIIDSYPLHEREARTKG 105
+ +A I ++ +++ + I + + KG
Sbjct: 296 YTIWTAAVGKKSGFIPYESEWNAVKERLYDDNDEFDDGWSFSSKAIYGSSVEQFRQEHKG 355
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
GSG + ++ ++ +S I + F P +
Sbjct: 356 VFSGGSGTLISGMKLSVLDHSEPININDD-NTFFKFKEPSPERKYIATLDSAEGRGQDYH 414
Query: 166 NYRCREQTPIFHVA------------ALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQY- 211
+ + T L + + + +G ++
Sbjct: 415 SLNIIDVTDDQWEQVAVLHSNTISHLILPDIILKHLIEYNEAPIYIELNSTGVSIAKTLY 474
Query: 212 ----RRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
+ G S + D + + K+
Sbjct: 475 SDLEYENVICDSFNDLGMKQTKRTKAVGCSVLKDLIEKDKLKI 517
>gi|225552551|ref|ZP_03773490.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225370879|gb|EEH00310.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 58/213 (27%), Gaps = 11/213 (5%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ ++ + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNKATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR GE I + I +
Sbjct: 213 DN-VATFKTYNFTTYDNVLLSKGFIETQEKLYKDIPSYKARVLLGEWIASTDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+I N + G + + D Y R + +
Sbjct: 270 NITQNYVFTSPIAYLDPAFSIGGDNTALCVMERVD---DKYYAFVFQDQRPVNDPYIMNM 326
Query: 181 LKS-WGKWLPWAWPHDGLQHDKRSGEQLSAQYR 212
+K+ G + + + K +G
Sbjct: 327 VKTVLGNFNAHTLYLEDRDNTKGAGALTREYMA 359
>gi|329767772|ref|ZP_08259288.1| phage terminase large subunit [Gemella haemolysans M341]
gi|328838873|gb|EGF88467.1| phage terminase large subunit [Gemella haemolysans M341]
Length = 435
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 37/258 (14%)
Query: 19 VWFDEEPPEDVYFE------GLTRI---NATQGLVTLTLTPLKGRSPIIEHY--LSASSS 67
VW++E D E R + P + I + +
Sbjct: 131 VWYEESAEFDSKEEFDQTNITFMRQKHKLIPFVQFFWSYNPPRNPYDWINEWSEEMKTVE 190
Query: 68 DRQVIRMTI--NETPHYNEQERKRIID--SYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
V +E EQ I GEP+ ++ +
Sbjct: 191 GYLVHESNYLNDELGFVTEQMLADINRIKENDFDYYRYIYLGEPVGLGNNVYNMA----C 246
Query: 124 INSLDIPEHWVQIGGMDFGWH-----HPFAAGHLVWNRDSDVIYVVKNYR-----CREQT 173
+ LD +I G+ + A G +VI + Y +
Sbjct: 247 FHLLDELPSDDKIIGISYALDTGHQQSATACGAYGITAKGNVILLDTFYYSPAGRSVKAA 306
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQ--HDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
P + + + + ++ D G + Y+ G++ +P N
Sbjct: 307 PSDLTIMINGFITGVQEKYNVPIIRLTIDSAEGALRNQYYKDFGIRWVP----VAKKKNQ 362
Query: 232 VEAGISDMLDRMRSGRWK 249
I + + GR+
Sbjct: 363 TM--IDMVTSLLAQGRFF 378
>gi|283778449|ref|YP_003369204.1| hypothetical protein Psta_0658 [Pirellula staleyi DSM 6068]
gi|283436902|gb|ADB15344.1| protein of unknown function DUF264 [Pirellula staleyi DSM 6068]
Length = 498
Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 29/142 (20%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEG---LTRINATQGLVTLTL--TPLKGRS-PII 58
+ ++ S+ ++ FDE PED Y L R + + P +
Sbjct: 155 DKYRYASSEFQFIGFDELTEFPEDDYLFLFSRLRRTRDLPVPLRMRAASNPGNRGHQWVK 214
Query: 59 EHYLSAS---------------------SSDRQVIRMTINETPHYNEQERKRIIDSYPLH 97
+ +++ + R + I + P + + P
Sbjct: 215 QRFITREAMEAASRARDEQLATSNDLFWNEGRAYLPSRIIDNPSLDRASYLESLSHLPRL 274
Query: 98 EREARTKGEPILGSGRIFPIVE 119
RE G+ + +
Sbjct: 275 IRERLLHGDWSVQEDSLIRANW 296
>gi|217966247|ref|YP_002351925.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
HCC23]
gi|217335517|gb|ACK41311.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
HCC23]
gi|307572148|emb|CAR85327.1| bacteriophage terminase large subunit [Listeria monocytogenes L99]
Length = 443
Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/258 (12%), Positives = 69/258 (26%), Gaps = 29/258 (11%)
Query: 15 TVHYVWFDEEPPE------DVYFEGLTRINATQGL---VTLTLTPL-KGRSPIIEHYLSA 64
V +WF+E DV + R + ++ P + E+ +
Sbjct: 135 YVSALWFEELAEFSGVTDIDVVEDTFIREDLPDNQEVTTYMSFNPPRNPYEWVNEYVDNR 194
Query: 65 SSSDRQVIRMTINETP-----HYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
S D +I T ++ GE I ++ +
Sbjct: 195 RSDDDYLIHHTTYLNDEKGFLSKQIIKKIEKYKKNDFDYYRWMYLGEVIGLGDNVYNMNL 254
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQT 173
+ + +D G +VI + Y ++
Sbjct: 255 FQSLNAIPADDRLILIDFAIDTGHQVSATTCLAFGLTAKRNVILLDTYYYSPANQVVKKA 314
Query: 174 PIFHVAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
P + L+ + + ++ P D D G + Y+ G+ + P +
Sbjct: 315 PSDYSKELREFMTKVVKMYSVPVDTQTVDSAEGGLRNQYYKDYGISLHPVAKSKK----- 369
Query: 232 VEAGISDMLDRMRSGRWK 249
+ D + GR+
Sbjct: 370 -VDMVDFACDLLAQGRFY 386
>gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 467
Score = 50.9 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 115 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 173 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 232
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 233 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 284
>gi|66391763|ref|YP_238487.1| terminase large subunit [Streptococcus phage 2972]
gi|56718420|gb|AAW27926.1| terminase large subunit [Streptococcus phage 2972]
Length = 195
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 14/144 (9%)
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ G I+ + I + ++PE GG+D+G+ H + + D + Y++
Sbjct: 3 WTVAEGAIYADYDSKIHVVD-ELPEMKRCFGGIDWGYTHYGSIVVVGEGVDGN-FYLLDG 60
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + V + + + D E ++ + E
Sbjct: 61 VAAQFKEIDWWVEQARKLT----GIYRNIPFYADSARPEHVA--------RFESEGFDIS 108
Query: 227 DGSNGVEAGISDMLDRMRSGRWKV 250
+ + V AGI + + + V
Sbjct: 109 NANKSVIAGIELIAKLFKEEKLYV 132
>gi|218202744|ref|YP_002364661.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|218164272|gb|ACK74336.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
Length = 450
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 40/155 (25%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDNPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
T + ++ + Y +AR GE I I +
Sbjct: 213 DN-IDTFTTYNFTTYDNVLLSKGFIETQEKLYKDMPTYKARVLLGEWIASIDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I + + G + +
Sbjct: 270 NITQDYVFSSPIAYLDPAFSVGGDNTALCVMERVD 304
>gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
Length = 441
Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/261 (11%), Positives = 67/261 (25%), Gaps = 31/261 (11%)
Query: 8 RDKWQSNTVHYVWFDEEPPE--------DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPII 58
+ + + W DE + L + + +T TP P++
Sbjct: 139 PEALRGPQFSHAWCDEVGKWPISHSRATRAWDNLLMGLRLGDDPRIAVTTTP--RAVPLV 196
Query: 59 EHYLSASSSDRQVIR--MTINETPHYNEQERKRIIDSYPLHER-EARTKGE-PILGSGRI 114
+ L +S + T + + + + + I D + + +GE G +
Sbjct: 197 QRLLKQETSQATAVTRGSTYDNSANLPARFLEAIADEFAGSQLGRQEIEGELIEDIEGAL 256
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMD---FGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + P + G+D D+ +
Sbjct: 257 WSRSLLEQSKEEAGPPGFRRIVIGVDPPTSSTGDECGIVVAALGEDNKAWVLADC-SVAR 315
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ---YRRQGMKMLPECATFDDG 228
P A+ W D + + G ++ G+ + A+
Sbjct: 316 AQPEQWARAVAEAAHH----WRSDRIIAEANQGGEMVESVLRAADAGLPVKLVHASRGK- 370
Query: 229 SNGVEAGISDMLDRMRSGRWK 249
A + S R +
Sbjct: 371 ----VARAEPVAALYASDRVR 387
>gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 282
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 8/169 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 115 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 173 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 232
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
V + + F A R VIY ++ +E
Sbjct: 233 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 281
>gi|226322130|ref|ZP_03797652.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|226232450|gb|EEH31207.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 40/155 (25%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDNPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
T + ++ + Y +AR GE I I +
Sbjct: 213 DN-IDTFTTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASIDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I + + G + +
Sbjct: 270 NITQDYVFSSPIAYLDPAFSVGGDNTALCVMERVD 304
>gi|30062205|ref|NP_836376.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|56479715|ref|NP_706602.2| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040450|gb|AAP16182.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|56383266|gb|AAN42309.2| putative bacteriophage protein [Shigella flexneri 2a str. 301]
Length = 207
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 95 KSLEG--IDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 152
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFP 116
+ ++ +E P ++ K I + + +G P
Sbjct: 153 EGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIR 204
>gi|224586458|ref|YP_002640348.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497449|gb|ACN53076.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 359
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+++ + ++ +E + E L R+ Q + P Y+
Sbjct: 62 ASDFERFIGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDHPEHYFKTDYI 121
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
+ + T + ++ + Y +AR G I + I +
Sbjct: 122 DN-VATFKTYNFTTYDNVLLSKVFIETQEKLYKEIPTYKARVLLGAWIASTDSI--FTQI 178
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I+ + + G + +
Sbjct: 179 NIIQDYVFTSPIAYLDPAFSIGGDNTALCVMERVD 213
>gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 421
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 69 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 126
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 127 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 186
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 187 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 238
>gi|28378987|ref|NP_785879.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1]
gi|28271825|emb|CAD64730.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1]
Length = 219
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 18 YVWFDEEPPEDVYFEGLT-----RINATQG--LVTLTLTPLKGRSPIIEHYLSASSSDRQ 70
++W +E + + + T R N Q VTLT P + + D
Sbjct: 132 WLWVEEAYEIESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQKRDDAF 191
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHE 98
V T+ +++ ++R+ P
Sbjct: 192 VRTTTVRCNEFVSDEYKQRLYRFIPNQP 219
>gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 414
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 62 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 119
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 120 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 179
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 180 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 231
>gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 282
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 68 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 125
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 126 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 185
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 186 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 237
>gi|238695035|ref|YP_002922229.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
JSE]
gi|220029171|gb|ACL78106.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
JSE]
Length = 607
Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
AY D + N+ +++ DE + + + + + +T TP G +
Sbjct: 234 AYASSPDAVRGNSFSFIYIDEAAFISAWQDAWLAIQPVISSGRESKLIMTTTPN-GLNHF 292
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+ + SA + H ++ + + +G
Sbjct: 293 YDIWQSAIDGKSGYVP--YEAVWHSVKE-----RLYNKADIFDDGYEWSSQAIAGSSLEQ 345
Query: 118 VEEDIVINSL 127
++
Sbjct: 346 FLQEHNAEFF 355
>gi|168229278|ref|YP_001686799.1| orf5 [Streptococcus phage 858]
gi|155241673|gb|ABT17993.1| orf5 [Streptococcus phage 858]
Length = 195
Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 14/144 (9%)
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ G I+ + I + ++PE GG+D+G+ H + + D + Y++
Sbjct: 3 WTVAEGAIYADYDSKIHVVD-ELPEMKRYFGGIDWGYTHYGSIVVVGEGVDGN-FYLLDG 60
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + + V + + + D E ++ + E
Sbjct: 61 VAAQFKEIDWWVEQARKLT----GIYRNIPFYADSARPEHVA--------RFESEGFDIS 108
Query: 227 DGSNGVEAGISDMLDRMRSGRWKV 250
+ + V AGI + + + V
Sbjct: 109 NANKSVIAGIELIAKLFKEEKLYV 132
>gi|253699636|ref|YP_003020825.1| DNA packaging protein GP17 (terminase) [Geobacter sp. M21]
gi|251774486|gb|ACT17067.1| putative DNA packaging protein GP17 (terminase) [Geobacter sp. M21]
Length = 504
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 29/120 (24%), Gaps = 7/120 (5%)
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ D G R ++ + + +V L+
Sbjct: 313 VPWEPKLPVDTAWDLGMDDTTCIVF--RQRYGTQNRLIDYHENSGEGLPHYVKVLQDKPY 370
Query: 187 WL-PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRS 245
PHD + G++ + + +E GI ++ + S
Sbjct: 371 TYGRHYLPHDSKVRSLNDAVSREDKLYELGLR----NLVIVERTRDIEDGIEEVRSFLAS 426
>gi|224586602|ref|YP_002640499.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497136|gb|ACN52769.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 450
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 40/155 (25%), Gaps = 7/155 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++++ + ++ +E + E L R+ Q + P Y+
Sbjct: 153 ASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETIIFDTNPDNPEHYFKTDYI 212
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE-REAR-TKGEPILGSGRIFPIVEE 120
T + ++ + Y +AR GE I I +
Sbjct: 213 DNIH-TFTTYNFTTYDNVLLSKGFIETQEKLYKDIPTYKARVLLGEWIASIDSI--FTQI 269
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+I + + G + +
Sbjct: 270 NITQDYVFSSPIAYLDPAFSVGGDNTALCVMERVD 304
>gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 374
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 22 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 79
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 80 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 139
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 140 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 191
>gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8]
gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 255
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 3/112 (2%)
Query: 12 QSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDR 69
+ T V DE P+ Y + T G TP R E +
Sbjct: 110 RGYTADLVIADEAARVPDAAYVATRPMLAVTGGRFVGLSTPAGQRGWFYEAWTDPGQE-W 168
Query: 70 QVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ +++T + P E ++ + + E ++F +
Sbjct: 169 EQVKVTGQDCPRMTEAFLEQERREMGDWQFRSEYMCEFTDTEDQLFATEHIE 220
>gi|312885385|ref|ZP_07745031.1| phage terminase, large subunit, PBSX family [Mucilaginibacter
paludis DSM 18603]
gi|311302133|gb|EFQ79156.1| phage terminase, large subunit, PBSX family [Mucilaginibacter
paludis DSM 18603]
Length = 480
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 47/196 (23%), Gaps = 31/196 (15%)
Query: 1 LKAYEQGRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSP 56
+ + +K + + V +E D Y + R+ G + P+
Sbjct: 111 FRGLD-DSEKIKGISNFKKVILEEVSQFDEVDYKQIRKRLRGQLGQQIIGIFNPVSEDHW 169
Query: 57 IIEH----------------YLSASSSDRQVIRMTINET------PHYNEQERKRIIDSY 94
I H + +++ + ++
Sbjct: 170 IKNHIFDQEVLQPIESNISGMWRNEPGNLLILKTNYLDNRYIVGPQFVDQHAIADFERDK 229
Query: 95 PLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH---HPFAAGH 151
+ G G R +D + +W + + W +P+
Sbjct: 230 ISDYNYYQIYGLGNWGKLRTGGEFWKDFNASRNSARVNWNEALPLHLSWDENVNPY-LTC 288
Query: 152 LVWNRDSDVIYVVKNY 167
LVW + +
Sbjct: 289 LVWQIEGKTATQIDEI 304
>gi|56694902|ref|YP_164412.1| terminase large subunit [Bacillus phage BCJA1c]
gi|52631329|gb|AAU85081.1| terminase large subunit [Bacillus phage BCJA1c]
Length = 453
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 54/224 (24%), Gaps = 23/224 (10%)
Query: 43 LVTLTLTPLKGRSPIIEHY--LSASSSDRQVIRMTINE--TPHYNEQERKRIID--SYPL 96
+ P + I + D V + + Q K I +
Sbjct: 170 QFFWSYNPPRNPYHWINEWADKMVGEEDYLVHESSYLDDQLGFVTGQMLKDIERIKNNDH 229
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWN 155
GEP+ ++ + + +D G H A G
Sbjct: 230 DYYRYIYLGEPVGLGTNVYNMNLFKPLDQLPSDDRVIALFYSVDGGHAHSATACGFYGLT 289
Query: 156 RDSDVIYVVKNYRC-----REQTPIFHVAALKSW--GKWLPWAWPHDGLQH---DKRSGE 205
VI + Y R++ P L + W +Q D
Sbjct: 290 ARGKVIRLNTYYYSPAGRVRKKAPSELSKDLHDFVTATAKQEYWKGARIQKRTIDDAEAA 349
Query: 206 QLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ Y G LP G I + D + GR+
Sbjct: 350 IRNQYYADYGQYWLP------VGKKKKIDMIDYVHDLLAQGRFY 387
>gi|87200729|ref|YP_497986.1| Phage uncharacterized protein-like [Novosphingobium aromaticivorans
DSM 12444]
gi|87136410|gb|ABD27152.1| Phage uncharacterized protein-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 458
Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/271 (10%), Positives = 64/271 (23%), Gaps = 44/271 (16%)
Query: 9 DKWQSNTVHYVWFDEEPP--EDVYFEGLTRI-----NATQGLV----TLTLTPLKGRSPI 57
DK ++ +E + TR+ + L P
Sbjct: 138 DKILGKEYATIYVNESSQVAYETVLTLRTRLAQACFRRDGSRLPLKGLYDLNPTGRGHWT 197
Query: 58 IEHYLSASSSD---------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
++ + R + M + PH + +D P +R+ G+ +
Sbjct: 198 YREFVEQVRPENGMPIEHGSRAWVAMNPVDNPHLPPE-YHAELDGLPDKQRQRFRDGKYL 256
Query: 109 LGS-GRIFPIVEED---------------IVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
G ++ + L V G D +
Sbjct: 257 SEVPGALWSASDRTADDGTLMPGIDTLRRHAHPPLRRVVIGVDPSGSDGTGGDCQGIVAV 316
Query: 153 VWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA-QY 211
D + + +P + + D + ++ G +
Sbjct: 317 GLGEDGHGYVLAD--KSCRLSPEGWARVVADLARK----VGADRIVAERNFGGAMVEAIL 370
Query: 212 RRQGMKMLPECATFDDGSNGVEAGISDMLDR 242
R ++ T G ++ + +R
Sbjct: 371 RSADTRLPIRMVTASRGKVARAEPVAALYER 401
>gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 257
Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 75 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 132
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + +G P E
Sbjct: 133 EDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAA 192
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 193 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 244
>gi|160935244|ref|ZP_02082627.1| hypothetical protein CLOBOL_00139 [Clostridium bolteae ATCC
BAA-613]
gi|158441975|gb|EDP19672.1| hypothetical protein CLOBOL_00139 [Clostridium bolteae ATCC
BAA-613]
Length = 459
Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/282 (13%), Positives = 76/282 (26%), Gaps = 43/282 (15%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHY 61
E K + N+ E ++ E R + A + V L P R+PI Y
Sbjct: 127 EDSYKKIRGNSYGMWIATEINLHHDNTIKEAFNRQLAAQRLKVFWDLNPDNPRAPIYAEY 186
Query: 62 LSAS---------SSDRQVIRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILG 110
+ + TI + + + + + Y + KG ++
Sbjct: 187 IDKYQRQADAGDFPGGYNYMHCTIYDNINITPERLREVESRYDKNSIWYLRDIKGMRVVA 246
Query: 111 SGRIFPIVEEDIVINSL------DIPEHWVQIGGMDFGWHH-PFAAGHLVWNRD-SDVIY 162
+G I+ +D + I G+DFG A R +V+
Sbjct: 247 NGLIYRRFADDTSTKQYTFRLTDKPKDIMEIILGIDFGGSGSGHAFTATAITRGYHNVVV 306
Query: 163 VVKNYRCREQTPIFHVAA---------------LKSWGKWLPWAWPHDGLQHDKRSGEQL 207
+ + + + + S ++ + Q
Sbjct: 307 LASEWIGCKDEKGNQIEIDPEMLGTMFCNFCQKIISRYGYITTVYADSAEQTLIAGIRS- 365
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
R+ G+ + + I+ M GR+
Sbjct: 366 --SLRKHGLGWVRVENAL---KTEINDRINATAILMAQGRFY 402
>gi|330992641|ref|ZP_08316586.1| phage DNA packaging protein [Gluconacetobacter sp. SXCC-1]
gi|329760295|gb|EGG76794.1| phage DNA packaging protein [Gluconacetobacter sp. SXCC-1]
Length = 437
Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/269 (11%), Positives = 63/269 (23%), Gaps = 37/269 (13%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQ---GLVTLTLTPLKGRSPIIEHYLS 63
+K V+ +E LTR+ + P + +
Sbjct: 116 EKILGLEFATVYLNEASQITYGARNMLLTRLAQKSPLALKEYVDANPPTTSHWLYRVFEE 175
Query: 64 ASSS---------DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI-LGSGR 113
+++ E + + P ER +GE G
Sbjct: 176 GVEPTSGTPLDRARHATMQLNPAGNRANLSAEYMAQLAALPERERRRFMEGEYQHAVDGA 235
Query: 114 IFPIVEEDIVINSLD-----IPEHWVQ---------IGGMDFGWHHPFAAGHLVWNRDSD 159
++ + + I H + G + +
Sbjct: 236 LWRMEDFARAAAITPATRGAIAAHMRRIVVAVDPSGCSGPEDMRSDEIGIVVCGVDAAGA 295
Query: 160 VIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
+ R+ + AAL++ W + + ++ G L R G+
Sbjct: 296 GHVLAD-LSRRDSPAGWARAALQAQAD-----WGAERIVAEQNFGGALVEATLR-GLNP- 347
Query: 220 PECATFDDGSNGVEAGISDMLDRMRSGRW 248
T S G A + GR
Sbjct: 348 NAALTMVSASRGKAARAEPVAALYEQGRV 376
>gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 441
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 8/172 (4%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 89 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 146
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDI 122
D + ++ +E P ++ K I + + +G P E
Sbjct: 147 EDTLIRKINYDENPFLSDTMLKVIDAARRRYPEGFVHVYEGVPESDDDAAIIKLSWIEAA 206
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
V + + F A R VIY ++ +E
Sbjct: 207 VDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 258
>gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
Length = 430
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/251 (12%), Positives = 69/251 (27%), Gaps = 26/251 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
G + T+ +W EE E DV + R Q + P+ P+
Sbjct: 135 GIKSLEGATLT-IW--EEASEGRQRSLDVLIPTVLRT--PQSELWCLWNPMLPTDPVDRF 189
Query: 61 YLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVE 119
+ R+ + PH+ E R+++ A + +
Sbjct: 190 FRGDVEPQKTICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGAYMPSAQNALWT 249
Query: 120 EDI--------VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
++ ++ V G ++ V+ +
Sbjct: 250 RELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGR-YGAEGYIVLDDRSVAA 308
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS-GEQLSAQYRRQGMKMLPECATFDDGSN 230
++P + A+ D + +K G+ +++ R G+ T G
Sbjct: 309 RSPEGWATEVLRAVD----AYAADCVVVEKNFGGDLVASNLRVNGVHCRIREVTASRGKQ 364
Query: 231 GVEAGISDMLD 241
I+ + +
Sbjct: 365 VRAEPIAALYE 375
>gi|301300613|ref|ZP_07206805.1| phage terminase, large subunit, PBSX family [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300851800|gb|EFK79492.1| phage terminase, large subunit, PBSX family [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 435
Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/280 (15%), Positives = 77/280 (27%), Gaps = 42/280 (15%)
Query: 7 GRDKWQSNTVH---YVWFDEEPP---EDVYFEGLT------RINATQGLVTLTLTPLKGR 54
K +SN V VWF+E DV+ + + V + P +
Sbjct: 116 NPHKLKSNKVDNIIAVWFEEAANMKGVDVFDQSIPSFIRQKPDYVDDVKVYFSYNPPRNP 175
Query: 55 SPIIEHYL--SASSSDRQVIRMTINE--TPHYNEQERKRIIDS--YPLHEREARTKGEPI 108
I ++ + V T + EQ+ K I GE +
Sbjct: 176 YEWINDWVTAREEDPEYFVDTSTYLDDELGFTTEQQLKLIESYKNNDYDYYRWLYLGE-V 234
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN-RDSDVIYVVKNY 167
+G G ++ + L ++ H A + D + ++ Y
Sbjct: 235 IGLGTNIYNMDNFKALKELPSDDYITNWFCAIDSGHEVSATTFGAYGLTRKDNVILLDTY 294
Query: 168 RCR------EQTPIFHVAALKSWGKWLPWAWPHDG--LQHDKRSGEQLSAQYRRQGMKML 219
++ P L S+ L + L D G + Y G+ +
Sbjct: 295 YYSPQGKAHKKPPSELSKDLYSFINKLAKKFKKPATKLTIDSAEGALDNQFYNDYGVHL- 353
Query: 220 PECATFDDGSNGVEAGISDMLDRMRSGRW--------KVF 251
I + + + GR+ K+F
Sbjct: 354 -----HKVAKLKKVDMIDRVQNIVAQGRFYYLDTESNKIF 388
>gi|281416255|ref|YP_003347604.1| terminase large subunit [Enterococcus phage phiFL3A]
gi|270209520|gb|ACZ64061.1| terminase large subunit [Enterococcus phage phiFL3A]
Length = 239
Score = 49.4 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 5 EQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTLTLTP 50
Q ++ +S W +E + L A + P
Sbjct: 111 AQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNP 170
Query: 51 LKGRSPI--IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
K R ++ S + V T + P + + + + + + A + +
Sbjct: 171 PKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGK 230
Query: 109 LGSGRIFP 116
+ P
Sbjct: 231 AIGSGVVP 238
>gi|227513235|ref|ZP_03943284.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
gi|227083616|gb|EEI18928.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
Length = 452
Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 67/252 (26%), Gaps = 27/252 (10%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHYL--SASSS 67
+W++E +V+ + R + V + P + I ++ +
Sbjct: 135 LWYEEAANFKGAEVFDQTNPTFIRQKSPWVNDVKVFYSYNPPRNPYDWINEWIALQEQNP 194
Query: 68 DRQVIRMTINE--TPHYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIFPIVEEDIV 123
+ T + +Q+ I + G+ I ++ + +
Sbjct: 195 QCFIDTSTYLDDELGITKDQQLALIETYKKNDLEYYKWLYLGKIIGLGTNVYNMELFHPL 254
Query: 124 INSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVVKNYR-----CREQTPIFH 177
D +D G + + + VI + Y R++ P
Sbjct: 255 TKLFDDDPLVNLYFSIDAGHINSATTCLAIGVTAEGKVILLHTYYYSPEHQSRKKAPSDL 314
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V +KS+ + + P D G + + + I
Sbjct: 315 VPEIKSFEDSMHYHQPIGKRTIDSAEGALRNEFVKEY------NEVWHGVAKSDEATMID 368
Query: 238 DMLDRMRSGRWK 249
+ + GR
Sbjct: 369 YVSSLLAQGRVY 380
>gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516]
gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516]
Length = 444
Score = 49.0 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/257 (9%), Positives = 57/257 (22%), Gaps = 26/257 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + +T TP P
Sbjct: 147 DPEALRGPQFDAAWVDELAKWKKAEEAWDMLQLALRLGDDPRCCVTTTP----RPTALMR 202
Query: 62 LSASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEP-ILGSGRIF-PI 117
+ + Y G G ++
Sbjct: 203 ALLERDGTARTHAPTEANAANLARAFLAEVRRRYAGSPLGRQELDGVMLSEIEGALWSAG 262
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCREQT 173
+ + V G D +V+++ +
Sbjct: 263 AIAAANCDVVPDLHRVVVAVDPSAGGGDVCGIVVAGACYDGGADNWRAWVLEDASVAGSS 322
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ AA+ ++ + D + + + G+ ++A R+ + + G
Sbjct: 323 TTWARAAIAAYERH-----QADRIVAEVNQGGDMVAAMLRQVAPTVPYKGVRAMRGK--- 374
Query: 233 EAGISDMLDRMRSGRWK 249
A + GR +
Sbjct: 375 AARAEPVAALYEQGRVR 391
>gi|311993449|ref|YP_004010314.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj9]
gi|295917406|gb|ADG60077.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj9]
Length = 609
Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/191 (9%), Positives = 44/191 (23%), Gaps = 18/191 (9%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 237 AYAASPDAVRGNSFSLIYIDECAFIPNFNDAWLAIQPVISSGRHSKIIITTTPNGMNHFY 296
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A + + ++ + G
Sbjct: 297 DIWTAAVEGISGFVPYESEWNAVKERLYDDKDVFDDGWHFSFTTIGGSSVEQFRQEHVGV 356
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
G G + + + L+ P + + P +
Sbjct: 357 FAGGQGTLS--LRHETCNLKLETPINVGDSTFYKYKEPDPTRKYIATLDSAEGRGQDYHC 414
Query: 167 YRCREQTPIFH 177
+ T
Sbjct: 415 MNIIDVTDEQW 425
>gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
Length = 552
Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/176 (8%), Positives = 50/176 (28%), Gaps = 12/176 (6%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRS 55
A + + + ++ DE +D + I++ + + ++ +G +
Sbjct: 156 IAASTSASAVRGMSFNIIFLDEFAFVANHLADDFFSSVYPTISSGKSTKVIIVSTPRGMN 215
Query: 56 PIIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
+ A + + +E P +E +++ I + + + E +
Sbjct: 216 HFYRLWHDAELGRNEYVTTDVHWSEVPGRDEAWKEQTIKNTSEAQFRVEFECEFLGSVDT 275
Query: 114 IFPIVEEDIVINSLDIPEHWV----QIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
+ + ++ I ++ + +D V
Sbjct: 276 LIAPSKLKTMVYDEPINTGKRGGEIYQNPIEKHNYSITVDVARGVEKDYSAFIVFD 331
>gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
Length = 548
Score = 48.6 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/213 (10%), Positives = 61/213 (28%), Gaps = 25/213 (11%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRI-NATQGLVTLTLTPLKGRSP 56
A + + + ++ DE D +F + + + + ++ +G +
Sbjct: 156 AASTSASAVRGMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVIIISTPQGMNH 215
Query: 57 IIEHYLS--ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP------- 107
+ ++ + + ++ P +E+ ++ I + + + E
Sbjct: 216 FYKMWVDATNGRNGYTFHEVHWSQVPGRDEKWKEETIKNTSERQFTQEFECEFLGSVDTL 275
Query: 108 --------ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD 159
++ + I DI + E+ + + A
Sbjct: 276 IAASKLKALVFNDPIKRNKGLDIYEEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVP- 334
Query: 160 VIYVVKNYRCREQTPIFHVAALKSWGKWLPWAW 192
VV YR E P+ + + AW
Sbjct: 335 -YKVVGKYRNNEIKPMLFPNIINDLARSYNNAW 366
>gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7]
Length = 526
Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 50/167 (29%), Gaps = 8/167 (4%)
Query: 3 AYEQGRDKWQSNTVHYVWFDE---EPPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPI 57
A + +++ ++ DE + ++ + V +T T +
Sbjct: 158 AAATSSSSIRGLSINLLYLDEFAFVDDAETFYTATYPVVTSGKDSKVIITSTANGVGNMF 217
Query: 58 IEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ Y SA + + P +E+ +K I + + E LG+G
Sbjct: 218 YKIYESAVHDQSEYKHFLINWFDVPGRDEEWKKETIANTSEAQFEQEYGNSF-LGTGNTL 276
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ + S + + + + + ++ + Y
Sbjct: 277 INSNTLLGLMSKEPDWNKDGVKVYEKPKEGHTYITTVDVSKGRGIDY 323
>gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74]
Length = 346
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 14/166 (8%)
Query: 19 VWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTI 76
+W +E Y + L +G P + +++ + ++
Sbjct: 2 LWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINY 61
Query: 77 NETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPIVE------EDIVINSLD 128
+E P ++ K I + + +G P + + + +
Sbjct: 62 DENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFE 121
Query: 129 IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ A + R V++ ++ +E
Sbjct: 122 PSGRKRIGFDVADSGTDKCANVY----RHGSVVFWADEWKAKEDEL 163
>gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
Length = 549
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 19/202 (9%), Positives = 59/202 (29%), Gaps = 12/202 (5%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRS 55
A + + + ++ DE + + I++ + + ++ G +
Sbjct: 155 MAASTSASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMN 214
Query: 56 PIIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
+ + A + I +E P ++ +++ I + + + E +
Sbjct: 215 MFYKLWHDAERGTNEYIPTEVHWSEVPGRDDVWKEQTIKNTSEQQFRVEFECEFLGSVDT 274
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + I+ + E+ H + + V + + T
Sbjct: 275 LISPSKLRIMPYHDPMKENRGLAIFEQSIPDHNYVIT---VDVSRGVGNDYSAFCVMDTT 331
Query: 174 PIFHVAALKSWGKWL-PWAWPH 194
I + + + P P+
Sbjct: 332 TIPYKMVARYRNNEIKPIILPN 353
>gi|329954246|ref|ZP_08295340.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
12056]
gi|328527952|gb|EGF54938.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
12056]
Length = 438
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 34/114 (29%), Gaps = 16/114 (14%)
Query: 9 DKWQSNTVHYVWFDEEPPED--VYFEGLTRINAT-------QGLVTLTLTPLKGRSPIIE 59
+++ S W +E + + TRI G + +T P ++ + +
Sbjct: 115 ERFGSLEFTGGWIEEAGQVNRLAFEVLQTRIGRHLNDVYNVPGKILITCNP--KKNWLYD 172
Query: 60 HYL-----SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPI 108
+ ++ + + P E + ++ +E G
Sbjct: 173 KFYKPWKEHKLKDGYAFVQALVQDNPFATEDYINTLKNTNDKVTKERLYFGNWE 226
>gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582]
gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582]
Length = 430
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 60/250 (24%), Gaps = 18/250 (7%)
Query: 14 NTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
++ +W +E E + I P + +++ A D V
Sbjct: 76 ESIDVLWNEEAHAMTEAQWEVLEPTIRKEGSECWFLFNPRLTTDFVWRNFVVAPPPDTLV 135
Query: 72 IRMTINETPHYNEQERKRIIDSYPLH--EREARTKGEPILGSGRIFPIVE------EDIV 123
++ +E P + I + E G P + +
Sbjct: 136 RKINYDENPFLSRTIMNVIEAAKARDAEMFEHVYLGMPRTDDDEAIIKLSWIEAAVDAHK 195
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
+++ H + A + V ++ RE + +
Sbjct: 196 ALNIEPAGHRRVGFDVADSGADKCANVYAH----GSVALWADEWKAREDELMKSCKRTYN 251
Query: 184 WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ----GMKMLPECATFDDGSNGVEAGISDM 239
A +D + SG + + + + + V D
Sbjct: 252 VALEREAAIIYDSIGVGASSGSKFAEINEERESASDWNVRTVDYFKFNAGGAVFEPERDY 311
Query: 240 LDRMRSGRWK 249
+ + +
Sbjct: 312 QPGITNKDFF 321
>gi|311993161|ref|YP_004010027.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage CC31]
gi|284177999|gb|ADB81665.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage CC31]
Length = 610
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 40/168 (23%), Gaps = 18/168 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A S T + + + S
Sbjct: 296 DIWDAALSGKSGFEPYTAIWNS-------VKERLYNDQDMFDDGWQWSSQTISASSLEQF 348
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+++ I GM D+ Y K
Sbjct: 349 KQEHCAEF--HGTSGTLISGMKLANMD-----WTEVTPDNHGFYKFKE 389
>gi|282598984|ref|YP_003358901.1| gp17 terminase DNA packaging enzyme large subunit [Deftia phage
phiW-14]
gi|257219054|gb|ACV50069.1| gp17 terminase DNA packaging enzyme large subunit [Deftia phage
phiW-14]
Length = 585
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/251 (12%), Positives = 68/251 (27%), Gaps = 24/251 (9%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINA-TQGLVTLTLTPLKGRSP 56
+ D + ++ +++DE E+ + +++ LT TP R
Sbjct: 190 FSGTSDPDTVRGKALNGIYWDESAFTARDEEFWTSTFPVLSSGDTSKAILTSTPNGARGV 249
Query: 57 IIEHYLSASSSDRQVIR------MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ + + + V + P +E ++ I + + + +
Sbjct: 250 FYKIWKESEDPNSDVYNGFARLAVPWYRHPRRDEAWKELSIRKIGPTKFKQEHELSFLGS 309
Query: 111 SG-----------RIFPIVEEDIVINSLDIPEHWVQIGGMD--FGWHHPFAAGHLVWNRD 157
SG + ED + P + G+ G + + +
Sbjct: 310 SGCLIPPMTLERMGFINPLREDEHLKIFVEPVDDHKYIGIADSGGGVGADYSVCTIIDVT 369
Query: 158 SDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK 217
VV YR E PI + S +D Y +
Sbjct: 370 EIPYRVVAKYRNNEIAPIVFPYQIVSLCGLYNDCPVLIENNNDVGGQVSYITFYELEYEG 429
Query: 218 MLPECATFDDG 228
++ + G
Sbjct: 430 VICSKSDPKKG 440
>gi|215304|gb|AAA72960.1| unnamed protein product [Enterobacteria phage P22]
Length = 101
Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 218 MLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
MLP+ ATF DG N VE+GIS++ D M GR+KVF
Sbjct: 1 MLPDHATFPDGGNSVESGISELRDLMLEGRFKVF 34
>gi|32453660|ref|NP_861869.1| large terminase protein [Enterobacteria phage RB69]
gi|32350479|gb|AAP76078.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage RB69]
Length = 611
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/288 (9%), Positives = 64/288 (22%), Gaps = 49/288 (17%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFIDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETP-----HYNEQERKRIIDSYPL-------HEREARTKGE 106
+ + +A T + +E +
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASSLTQFRQEHTAA 355
Query: 107 PILGSG---RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
SG + D + + D + + +D +++
Sbjct: 356 FEGTSGTLISGMKLAILDYIEVTPDSHGFHQFKKPEEGHKYIATLDCSEGRGQDYHAMHI 415
Query: 164 VK------NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLS-------- 208
+ + L + + + +G ++
Sbjct: 416 IDVTTDKWEQVGVLHSNTISHLILPDIVFKYLMEYNECPIYIELNSTGVSVAKSLYMDLE 475
Query: 209 ------AQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
GMK G S + D + + K+
Sbjct: 476 YENVICDSMNDLGMKQSRRTKPV---------GCSTLKDLIEKDKLKI 514
>gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
Length = 549
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 15/195 (7%), Positives = 59/195 (30%), Gaps = 11/195 (5%)
Query: 12 QSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
+ + + ++ DE + + I++ Q + ++ G + + + A
Sbjct: 165 RGMSFNVIFLDEFAFVPNHIADQFFSSVYPTISSGQSTKVIIISTPHGMNMFYKLWHDAE 224
Query: 66 SSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
S + I +E P + + +++ I + + + + E + + + ++
Sbjct: 225 RSKNEYIPTEVHWSEVPGRDAKWKEQTIANTSEQQFKVEFECEFLGSVDTLISPSKLRVM 284
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I ++ + P + + + + T + + +
Sbjct: 285 PYHDPIAQNKGLAV---YKRAEPDHNYIITVDVARGTSNDYSAFCVMDTTTVPYEMVARY 341
Query: 184 WGKWLPWAWPHDGLQ 198
+ + +
Sbjct: 342 RNNEIKPIVFPNIIV 356
>gi|15320614|ref|NP_203458.1| terminase [Myxococcus phage Mx8]
gi|15281724|gb|AAK94379.1|AF396866_44 terminase [Myxococcus phage Mx8]
Length = 482
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 34/277 (12%), Positives = 72/277 (25%), Gaps = 40/277 (14%)
Query: 1 LKAYEQ--GRDKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGL---------VTLT 47
+A ++ K S + + +E P+ + +R+ V +
Sbjct: 114 FRALDRPEHVKKLLSLELTGAYVNEARQVPKAILDVLCSRVGRYPSKAQGGATWFGVWMD 173
Query: 48 LTPLKGRSPIIEHYLSASSSDRQVIRMTI------NETPHYNEQERKRIIDSYPLHEREA 101
P + + A ++ + +R +
Sbjct: 174 TNPWHTGHWGYKLFTKALPEGYELFEQPSGRAPDAENLENLPVGYYERQVAGKDAEWVAE 233
Query: 102 RTKGEP-----ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
+ G + +E I + + E D G + + R
Sbjct: 234 YIDSKYPSHDKGSIYGDLLAALEARGGICTFE-HETGSIFTIWDLGRADSTSI-WFMRLR 291
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWG-----KWLPWAWPHDGLQHDKRSGEQLSAQY 211
V +V +YR + + L W ++L PHD + + Q+
Sbjct: 292 TGGVD-IVDHYRNNGEPLSHYFGLLDGWASAKGYRYLKHVLPHDARAKTLVTRSSVLEQF 350
Query: 212 -RRQGMKMLPECATFDDGSN-GVEAGISDMLDRMRSG 246
+ G A G +E GI+ +
Sbjct: 351 LAKYG------PAAVVVGPQLSLEDGIAAARALLERD 381
>gi|168211744|ref|ZP_02637369.1| putative phage terminase, large subunit [Clostridium perfringens B
str. ATCC 3626]
gi|170710298|gb|EDT22480.1| putative phage terminase, large subunit [Clostridium perfringens B
str. ATCC 3626]
Length = 454
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 68/284 (23%), Gaps = 50/284 (17%)
Query: 13 SNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS------- 63
+ V DE + E TR + +TL P PI +++
Sbjct: 123 GSQFGCVLIDEVNTASIEFVREICTR----NDYLMMTLNPDDPNLPIYSEFINCCRPLEK 178
Query: 64 ---------------ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGE 106
+ T + +E+ ++ S P + + G
Sbjct: 179 YKKDVPVEILGQLNSEEKPNWTYWFFTFYDNASLDEEAIEKKKMSAPKGTKLYKNKILGL 238
Query: 107 PILGSGRIFPIVEED---------IVINSLDIPEHWVQIGGMDFGWH----HPFAAGHLV 153
+G IF E I + G+D + FA L
Sbjct: 239 RGRATGLIFSNFERKNNVLSKEQVIKQIKDKKLKFVQFTAGLDTAYSQNSPDTFAFTFLG 298
Query: 154 WNRDSDVIYVVKNYRCRE-----QTPIFHVAALKSWGKWLPWAWPHDGLQH-DKRSGEQL 207
++I + ++ + P + + W D +
Sbjct: 299 ITDKKELIVLDEDVYNNKDLETPLAPSDIAPKYFKFLEKNRKEWGFARDVFVDSADQATI 358
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + + I L + + KVF
Sbjct: 359 MELKKFKRTNPCMYNFINSYKKVTILDRIHLALGWINTNG-KVF 401
>gi|206599803|ref|YP_002241422.1| gp8 [Mycobacterium phage Troll4]
gi|206283045|gb|ACI06470.1| gp8 [Mycobacterium phage Troll4]
Length = 588
Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/309 (8%), Positives = 66/309 (21%), Gaps = 77/309 (24%)
Query: 8 RDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + V E + V+ + + +L + +G++ + +
Sbjct: 155 PDTLVGEGLSGVIMAEAAKQKPSVWTKHVRPTLGDFTGWSLHTSTPEGKNHFHDKFQMGQ 214
Query: 66 SSD---RQVIRMTINETPHY--------------NEQERKRIIDSYPLH----------- 97
+ + RM P+ E + H
Sbjct: 215 DPNNPEWESWRMPSWANPYVYTRTGRLIALGKLPPETPIPDHEYTLDRHVTIMQQLMREN 274
Query: 98 ------------------------------EREARTKGEPILGSGRIFPIVEEDIVINSL 127
+ G++F +E+ + L
Sbjct: 275 PTVSPFKIVADHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKVFKDWDEEYHVADL 334
Query: 128 ----------DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
++ D+G+ +P + + + V++ T
Sbjct: 335 VDYNVKQFGTYFNPNYETYAAADYGYTNPNVWLVIQIGK-WGEVNVLREIYMPGLTADAF 393
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ P D ++ G++ I
Sbjct: 394 ADEIRRQMCNPP---NLRIFYPDPADPMSSETLSQKLGIR---AAGGTGGEKRIRLNLIR 447
Query: 238 DMLDRMRSG 246
L R R+
Sbjct: 448 QFLKRGRND 456
>gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
Length = 549
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/139 (8%), Positives = 45/139 (32%), Gaps = 8/139 (5%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRS 55
A + + + ++ DE + + I++ + + ++ G +
Sbjct: 155 MAASTSASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMN 214
Query: 56 PIIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
+ + A + + +E P +E +++ I + + + E +
Sbjct: 215 MFYKLWHDAERGSNEYVPTEVHWSEVPGRDEVWKEQTIKNTSEQQFRVEFECEFLGSVDT 274
Query: 114 IFPIVEEDIVINSLDIPEH 132
+ + I+ + ++
Sbjct: 275 LISPSKLRIMPYHEPMNQN 293
>gi|206599713|ref|YP_002241902.1| gp7 [Mycobacterium phage Gumball]
gi|206282927|gb|ACI06381.1| gp7 [Mycobacterium phage Gumball]
Length = 588
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/309 (8%), Positives = 66/309 (21%), Gaps = 77/309 (24%)
Query: 8 RDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + V E + V+ + + +L + +G++ + +
Sbjct: 155 PDTLVGEGLSGVIMAEAAKQKPSVWTKHVRPTLGDFTGWSLHTSTPEGKNHFHDKFQMGQ 214
Query: 66 SSD---RQVIRMTINETPHY--------------NEQERKRIIDSYPLH----------- 97
+ + RM P+ E + H
Sbjct: 215 DPNNPEWESWRMPSWANPYVYTRTGRLVALGKLPPETPIPDHEYTLDRHVTIMQQLMREN 274
Query: 98 ------------------------------EREARTKGEPILGSGRIFPIVEEDIVINSL 127
+ G++F +E+ + L
Sbjct: 275 PTVSPFKIVADHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKVFKDWDEEYHVADL 334
Query: 128 ----------DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
++ D+G+ +P + + + V++ T
Sbjct: 335 VDYNVKQFGTYFNPNYETYAAADYGYTNPNVWLVIQIGK-WGEVNVLREIYMPGLTADAF 393
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ P D ++ G++ I
Sbjct: 394 ADEIRRQMCNPP---NLRIFYPDPADPMSSETLSQKLGIR---AAGGTGGEKRIRLNLIR 447
Query: 238 DMLDRMRSG 246
L R R+
Sbjct: 448 QFLKRGRND 456
>gi|189043160|ref|YP_001936099.1| gp8 [Mycobacterium phage Adjutor]
gi|188090811|gb|ACD49593.1| gp8 [Mycobacterium phage Adjutor]
Length = 588
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/309 (8%), Positives = 66/309 (21%), Gaps = 77/309 (24%)
Query: 8 RDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + V E + V+ + + +L + +G++ + +
Sbjct: 155 PDTLVGEGLSGVIMAEAAKQKPSVWTKHVRPTLGDFTGWSLHTSTPEGKNHFHDKFQMGQ 214
Query: 66 SSD---RQVIRMTINETPHY--------------NEQERKRIIDSYPLH----------- 97
+ + RM P+ E + H
Sbjct: 215 DPNNPEWESWRMPSWANPYVYTRTGRLIALGKLPPETPIPDHEYTLDRHVTIMQQLMREN 274
Query: 98 ------------------------------EREARTKGEPILGSGRIFPIVEEDIVINSL 127
+ G++F +E+ + L
Sbjct: 275 PTVSPFKIVADHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKVFKDWDEEYHVADL 334
Query: 128 ----------DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
++ D+G+ +P + + + V++ T
Sbjct: 335 VDYNVKQFGTYFNPNYETYAAADYGYTNPNVWLVIQIGK-WGEVNVLREIYMPGLTADAF 393
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ P D ++ G++ I
Sbjct: 394 ADEIRRQMCNPP---NLRIFYPDPADPMSSETLSQKLGIR---AAGGTGGEKRIRLNLIR 447
Query: 238 DMLDRMRSG 246
L R R+
Sbjct: 448 QFLKRGRND 456
>gi|109522575|ref|YP_655387.1| gp8 [Mycobacterium phage PLot]
gi|88910682|gb|ABD58607.1| gp8 [Mycobacterium phage PLot]
Length = 588
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/309 (8%), Positives = 66/309 (21%), Gaps = 77/309 (24%)
Query: 8 RDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + V E + V+ + + +L + +G++ + +
Sbjct: 155 PDTLVGEGLSGVIMAEAAKQKPSVWTKHVRPTLGDFTGWSLHTSTPEGKNHFHDKFQMGQ 214
Query: 66 SSD---RQVIRMTINETPHY--------------NEQERKRIIDSYPLH----------- 97
+ + RM P+ E + H
Sbjct: 215 DPNNPEWESWRMPSWANPYVYTRTGRLIALGKLPPETPIPDHEYTLDRHVTIMQQLMREN 274
Query: 98 ------------------------------EREARTKGEPILGSGRIFPIVEEDIVINSL 127
+ G++F +E+ + L
Sbjct: 275 PTVSPFKIVADHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKVFKDWDEEYHVADL 334
Query: 128 ----------DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
++ D+G+ +P + + + V++ T
Sbjct: 335 VDYNVKQFGTYFNPNYETYAAADYGYTNPNVWLVIQIGK-WGEVNVLREIYMPGLTADAF 393
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ P D ++ G++ I
Sbjct: 394 ADEIRRQMCNPP---NLRIFYPDPADPMSSETLSQKLGIR---AAGGTGGEKRIRLNLIR 447
Query: 238 DMLDRMRSG 246
L R R+
Sbjct: 448 QFLKRGRND 456
>gi|38640149|ref|NP_944105.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
Aeh1]
gi|33414835|gb|AAQ17878.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
Aeh1]
Length = 633
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 48/152 (31%), Gaps = 18/152 (11%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYF---EGLTR--INATQGLVTLTLTPLKGRSPI 57
AY D + N+ ++ DE + + + + + Q + LT TP
Sbjct: 260 AYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRQSRIILTSTPNGINHW- 318
Query: 58 IEHYLSASSSDRQVIRMT----------INETPHYNE--QERKRIIDSYPLHEREARTKG 105
+ + + SD+ T + + Y++ + + I+S + +
Sbjct: 319 YDLWEVSLKSDKGFKPYTTTWITVKERLYDGSDAYDDGFEWASKQINSSSVEAFQQEHLC 378
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQIG 137
+ SG + + + I +
Sbjct: 379 RFMGTSGTLINGFKLSKMTWKEVIADDNFYQI 410
>gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
Length = 550
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 10/113 (8%), Positives = 37/113 (32%), Gaps = 8/113 (7%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRI-NATQGLVTLTLTPLKGRSP 56
A + + + ++ DE D +F + + + + ++ +G +
Sbjct: 156 AASTSASAVRGMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVIIISTPQGMNH 215
Query: 57 IIEHYLS--ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
+ + +D + ++ P + + ++ I + + + E
Sbjct: 216 FYKMWQDAVNGRNDYTYHEVHWSQVPGRDAKWKEETIKNTSQRQFTQEFECEF 268
>gi|326781864|ref|YP_004322266.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM2]
gi|310003054|gb|ADO97452.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM2]
Length = 549
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 20/211 (9%), Positives = 57/211 (27%), Gaps = 21/211 (9%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRI-NATQGLVTLTLTPLKGRSP 56
A + + + ++ DE D +F + + + + ++ G +
Sbjct: 155 AASTSASAVRGMSFNILFLDEFAFVPNHVADSFFASVYPTITSGKNTKVIIVSTPHGMNH 214
Query: 57 IIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEP--ILGSG 112
+ A + I +E P +++ ++ I + + + + E + +
Sbjct: 215 FYRMWHDAEKRKNEYIPTDVHWSEVPGRDDKWKETTIANTSEQQFKVEFECEFLGSVDTL 274
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAA-----------GHLVWNRDSDVI 161
+ I N + + + +
Sbjct: 275 IAPSKLRTLIYDNPIQRNAGLDVYEPPKDKHDYVMTVDVARGVGEDYSAFVCVDITEFPH 334
Query: 162 YVVKNYRCREQTPIFHVAALKSWGKWLPWAW 192
+V YR + P+ + K A+
Sbjct: 335 RIVAKYRNNDIKPMLFPNIIYEVAKNYNSAY 365
>gi|109522784|ref|YP_655204.1| gp8 [Mycobacterium phage PBI1]
gi|206599627|ref|YP_002241506.1| gp8 [Mycobacterium phage Butterscotch]
gi|88910497|gb|ABD58424.1| gp8 [Mycobacterium phage PBI1]
gi|206282809|gb|ACI06296.1| gp8 [Mycobacterium phage Butterscotch]
Length = 588
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/309 (8%), Positives = 66/309 (21%), Gaps = 77/309 (24%)
Query: 8 RDKWQSNTVHYVWFDEEPPE--DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
D + V E + V+ + + +L + +G++ + +
Sbjct: 155 PDTLVGEGLSGVIMAEAAKQKPSVWTKHVRPTLGDFTGWSLHTSTPEGKNHFHDKFQMGQ 214
Query: 66 SSD---RQVIRMTINETPHY--------------NEQERKRIIDSYPLH----------- 97
+ + RM P+ E + H
Sbjct: 215 DPNNPEWESWRMPSWANPYVYTRTGRLIALGKLPPETPIPDHEYTLDRHVTIMQQLMREN 274
Query: 98 ------------------------------EREARTKGEPILGSGRIFPIVEEDIVINSL 127
+ G++F +E+ + L
Sbjct: 275 PTVSPFKIVADHKLRVDQEVIELAADMSIESFNQEIGADFTEYVGKVFKDWDEEYHVADL 334
Query: 128 ----------DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
++ D+G+ +P + + + V++ T
Sbjct: 335 VDYNVKQFGTYFNPNYETYAAADYGYTNPNVWLVIQIGK-WGEVNVLREIYMPGLTADAF 393
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
++ P D ++ G++ I
Sbjct: 394 ADEIRRQMCNPP---NLRIFYPDPADPMSSETLSQKLGIR---AAGGTGGEKRIRLNLIR 447
Query: 238 DMLDRMRSG 246
L R R+
Sbjct: 448 QFLKRGRND 456
>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 430
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/247 (10%), Positives = 60/247 (24%), Gaps = 26/247 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--------PPEDVYFEGLTRINATQGLVTLTLTPLKG 53
++ E+ + + V +E Y + + KG
Sbjct: 102 RSAERS-ENIEGFAYDLVILNEAGIILKDSKGGYLWYNSIRPMLLDNPKSRAIIGGVPKG 160
Query: 54 RSPIIEH-YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPL---HEREARTKGEPIL 109
++ E S + + + + + P E++ K +I+ GE I
Sbjct: 161 KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGESSDVVRQEIYGEFID 220
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG-----WHHPFAAGHLVWNRDSDVIYVV 164
S + S + G +G + + +V+
Sbjct: 221 SSSAELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVLA------KRKGFVI 274
Query: 165 KNYRC-REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
+ + I + + P G + G+ + +
Sbjct: 275 DELKKYSQLGTIELANKILA-EYKQSEEKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANS 333
Query: 224 TFDDGSN 230
SN
Sbjct: 334 ANSATSN 340
>gi|326536497|ref|YP_004300928.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
65]
gi|312262843|gb|ADQ53099.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
65]
Length = 642
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 24/168 (14%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYF---EGLTR--INATQGLVTLTLTPLKGRSPI 57
AY D + N+ ++ DE + + + + + + LT TP G +
Sbjct: 260 AYSSDPDAVRGNSFALIYVDECGFVEAWEDCWKAILPVISSGRNSKIVLTSTPN-GMNHW 318
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLH---------------EREAR 102
+ + SA + ++
Sbjct: 319 YDLWQSAINGKSGFEP--YEANWSAVKERLYHSETDSFDDGISWTTNQIGSSSVEAFLQE 376
Query: 103 TKGEPILGSGRIFPIVE-EDIVINSLDIPEHWVQIGGMDFGWHHPFAA 149
G+ + +G + + + ++ E+ + + G +
Sbjct: 377 HAGQFMGSAGTLITGFKLSKMTWTDIEATENLYRFKQPEVGHKYFACV 424
>gi|85059534|ref|YP_455236.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84780054|dbj|BAE74831.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 240
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 11/100 (11%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 12 QSNTVHYVWFDEE--PPEDVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
Q + W +E +D + L I V ++ P + ++
Sbjct: 108 QGVGI--CWVEEAEAVTKDSWDVLLPSIRGDKNAEVWISFNPKNILDDTYQRFIVNPPKG 165
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYPL---HEREARTKG 105
+++ ++ P++++ + ++ R +G
Sbjct: 166 AIILKANYSDNPYFHDSPLPQQMEECKERNVDRCRCRREG 205
>gi|157311455|ref|YP_001469498.1| large terminase protein [Enterobacteria phage Phi1]
gi|149380659|gb|ABR24664.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage Phi1]
Length = 607
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
AY D + N+ +++ DE + + + + + +T TP G +
Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPN-GLNHF 292
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+ + SA + H ++ + + +G
Sbjct: 293 YDIWQSAIDGKSGYVP--YEAVWHSVKE-----RLYNKADIFDDGYEWSSQAIAGSSLEQ 345
Query: 118 VEEDIVINSL 127
++
Sbjct: 346 FLQEHNAEFF 355
>gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
Length = 427
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/252 (9%), Positives = 56/252 (22%), Gaps = 23/252 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + +W DE + + + + T +G + +
Sbjct: 125 DPEALRGPQFDAIWADEVAKWRLAQEAWDMLVMGLRLGDDPRACLTTTPRGGPFLRKLLA 184
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRIIDSYPL-HEREARTKG-EPILGSGRIFPIVE 119
+ + + + + H G G ++P
Sbjct: 185 QS---GTVMTHAPTRANRANLAPGFVAAVEAMFEGSHLGRQELDGLLVDEAEGTLWPQHL 241
Query: 120 ED----IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCRE 171
D LD V + ++V+++ +
Sbjct: 242 LDAALQRQAPPLDRIVVAVDPPVTGHAGSDACGIIVAGVEQRGAPTDWRLWVIEDATVQG 301
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA-QYRRQGMKMLPECATFDDGSN 230
+P +A + D L + G L R+ +
Sbjct: 302 ASPHTWASAAIAAFHRH----GADRLVAEVNQGGALVESVLRQLDPHIPYRAVRASKSKG 357
Query: 231 GVEAGISDMLDR 242
+S + +R
Sbjct: 358 ARAEPVSTIYER 369
>gi|310722477|ref|YP_003969300.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
phiAS5]
gi|306021320|gb|ADM79854.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
phiAS5]
Length = 633
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 41/151 (27%), Gaps = 18/151 (11%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYF---EGLTR--INATQGLVTLTLTPLKGRSPI 57
AY D + N+ ++ DE + + + + + + + LT TP
Sbjct: 260 AYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRKSRIILTSTPNGINHW- 318
Query: 58 IEHYLSASSSDRQVIRMTINE------TPHYNEQERKRIIDSYPL------HEREARTKG 105
+ + + +SD+ T + ++ +
Sbjct: 319 YDLWEVSLNSDKGFKPYTTTWITVKERLYNGADKYDDGFEWATKQINSSSIEAFRQEHCC 378
Query: 106 EPILGSGRIFPIVEEDIVINSLDIPEHWVQI 136
+ +G + + +I E
Sbjct: 379 VFMGTAGTLINGFKLTKMIWDEVNNEDGFYC 409
>gi|260431843|ref|ZP_05785814.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415671|gb|EEX08930.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 176
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 34/120 (28%), Gaps = 4/120 (3%)
Query: 12 QSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDR 69
+ T + DE D + + G + L TP RS S ++
Sbjct: 52 RGETADLIIGDEACFIQPDEALTAFFPMRRSTGRIFLLSTPNGTRSGYFYETW-ESDANV 110
Query: 70 QVIRMTINETPHYNE-QERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLD 128
+ IR +T + + + + E + + + + + +
Sbjct: 111 RRIRARSMDTTREDRLAQIEFDRRTMSDATFRREHLCEWVGAGESLLSWNTLERAMQNKE 170
>gi|110801301|ref|YP_695396.1| putative phage terminase, large subunit [Clostridium perfringens
ATCC 13124]
gi|110675948|gb|ABG84935.1| putative phage terminase, large subunit [Clostridium perfringens
ATCC 13124]
Length = 454
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 68/284 (23%), Gaps = 50/284 (17%)
Query: 13 SNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS------- 63
+ V DE + E TR + +TL P PI +++
Sbjct: 123 GSQFGCVLIDEVNTASIEFVREICTR----NDYLMMTLNPDDPNLPIYSEFINCCRPLEK 178
Query: 64 ---------------ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKGE 106
+ + + +E+ ++ S P + + G
Sbjct: 179 YKKDVPKEIMEQLNSEPKPNWTYWFFSFYDNASLSEEAIEKKKTSAPKGTKLYKNKILGL 238
Query: 107 PILGSGRIFPIVEED---------IVINSLDIPEHWVQIGGMDFGWH----HPFAAGHLV 153
+G IF E I + G+D + FA L
Sbjct: 239 RGRATGLIFSNFERKNNVLSKEQVIKQIKDKKLKFVQFTAGLDTSYSQNSPDTFAFTFLG 298
Query: 154 WNRDSDVIYVVKNYRCRE-----QTPIFHVAALKSWGKWLPWAWPHDGLQH-DKRSGEQL 207
+++ + + + P + + W D +
Sbjct: 299 ITDKKELVMLDEEVYNNKDLETPLAPSDIAPKYFKFLEKNRNEWGFARDVFVDSADQATI 358
Query: 208 SAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
+ + + + I L + + KVF
Sbjct: 359 TELKKFKRTNPCMYNFINSYKKVTILDRIHLALGWINTNG-KVF 401
>gi|33620526|ref|NP_891724.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
RB49]
gi|33347993|gb|AAQ15394.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
RB49]
Length = 607
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
AY D + N+ +++ DE + + + + + +T TP G +
Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPN-GLNHF 292
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+ + SA + H ++ + + +G
Sbjct: 293 YDIWQSAIDGKSGYVP--YEAVWHSVKE-----RLYNKADIFDDGYEWSSQAIAGSSLEQ 345
Query: 118 VEEDIVINSL 127
++
Sbjct: 346 FLQEHNAEFF 355
>gi|6685017|gb|AAF23757.1|AF203974_1 terminase large subunit [Enterobacteria phage RB49]
Length = 607
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
AY D + N+ +++ DE + + + + + +T TP G +
Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPN-GLNHF 292
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPI 117
+ + SA + H ++ + + +G
Sbjct: 293 YDIWQSAIDGKSGYVP--YEAVWHSVKE-----RLYNKADIFDDGYEWSSQAIAGSSLEQ 345
Query: 118 VEEDIVINSL 127
++
Sbjct: 346 FLQEHNAEFF 355
>gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
Length = 362
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 10/148 (6%), Positives = 49/148 (33%), Gaps = 8/148 (5%)
Query: 12 QSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
+ + + ++ DE ++ + I++ + + ++ G + + + +
Sbjct: 165 RGMSFNVIFLDEFAFVPNHIADEFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDSE 224
Query: 66 SSDRQVI--RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
+ I + +E P + + + + I + + + + E + + + +
Sbjct: 225 RKKNEYISTEVHWSEVPGRDAKWKAQTIANTSEQQFKVEFECEFLGSVDTLISPSKLRTM 284
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGH 151
+ + + ++ H +
Sbjct: 285 VYNDPLVQNKGLSIYEHVQKDHNYVITV 312
>gi|121591052|gb|ABH10668.2| terminase subunit [Klebsiella phage KPP95]
Length = 302
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 41/167 (24%), Gaps = 18/167 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 140 AYASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRRSKIIITTTPSGLNHFY 199
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + S
Sbjct: 200 DIWTAAVEGKSGFTPYTAIWNS-------VKERLYNDEDMFDDGWQWSLQTISASSLEQF 252
Query: 119 EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
+++ I GM + DS Y ++
Sbjct: 253 KQEHCAEF--HGTSGTLISGMKLANMD-----WIEVTPDSHGFYNLR 292
>gi|291559961|emb|CBL38761.1| phage uncharacterized protein (putative large terminase),
C-terminal domain [butyrate-producing bacterium SSC/2]
Length = 481
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 34/287 (11%), Positives = 67/287 (23%), Gaps = 70/287 (24%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDVYF--EGLTRINATQG---LVTLTLTPLKGRS---- 55
++ D WQ + + + FDE Y L+R G V T P
Sbjct: 111 DEDCDNWQGSQLTMIGFDELTHFSEYQFFYMLSRNRTDSGIKPYVRATCNPDADSWVADF 170
Query: 56 --PIIEHYLSASSSDR-------------------------------------------- 69
I+ +R
Sbjct: 171 ISWWIDQETGYPIPERSGVIRWMVRINEAVTWFDSREEAVQGAIENGVKQKQAETMPKSV 230
Query: 70 QVIRMTINETPHYNEQE--RKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSL 127
I T+++ + + + + L +RE G + + E +
Sbjct: 231 TFISSTLHDNKILMKNDPGYLANLQAMALVQRERLLYGNWKIKAAAGLMFKREKANMLEE 290
Query: 128 DIPEHWVQIGGMDFG------WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
+ D P ++ + + Y+V + R + +
Sbjct: 291 MPLDVIKWARAWDLAATSEDENGDPAYTASVLIGKRKNGRYIVADVINRRLSSSDVREII 350
Query: 182 KS-------WGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPE 221
+ + P D Q K + +K +PE
Sbjct: 351 RQTCISDRTKYGRVVTRLPQDPGQAGKAQAQSFLKFLAGFIVKCIPE 397
>gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
Length = 547
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 12/139 (8%), Positives = 44/139 (31%), Gaps = 8/139 (5%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRS 55
A + + + ++ DE + + I++ + + ++ G +
Sbjct: 153 MAASTSASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMN 212
Query: 56 PIIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR 113
+ + A + + +E P ++ +++ I + + + E +
Sbjct: 213 MFYKLWHDAERGTNEYVPTEVHWSEVPGRDDVWKEQTIKNTSESQFRVEFECEFLGSVDT 272
Query: 114 IFPIVEEDIVINSLDIPEH 132
+ + I+ I +
Sbjct: 273 LIAPSKLRIMPYHDPITSN 291
>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
Length = 430
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/247 (9%), Positives = 57/247 (23%), Gaps = 26/247 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--------PPEDVYFEGLTRINATQGLVTLTLTPLKG 53
++ E+ + + V +E Y + + KG
Sbjct: 102 RSAERS-ENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRAIIGGVPKG 160
Query: 54 RSPIIEH-YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPL---HEREARTKGEP-- 107
++ E S + + + + + P E++ K +I+ + GE
Sbjct: 161 KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFID 220
Query: 108 ----ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
L S + + + + A +
Sbjct: 221 SSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALA------KRKGFVI 274
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
+ + + I + + P G + G+ + +
Sbjct: 275 YEIKKYSQLGTIELANKILA-EYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANS 333
Query: 224 TFDDGSN 230
SN
Sbjct: 334 ANSATSN 340
>gi|312262635|gb|ADQ52930.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
PX29]
Length = 406
Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYF---EGLTR--INATQGLVTLTLTPLKGRSPI 57
AY D + N+ ++ DE + + + + + + + LT TP
Sbjct: 257 AYASSPDAVRGNSFALIYLDEAAFIENFDDTWKAILPVISSGRKSRIILTSTPNGINHW- 315
Query: 58 IEHYLSASSSDRQVIRMTINE 78
+ + + +SD+ T
Sbjct: 316 YDLWEVSINSDKGFKPYTTTW 336
>gi|291334830|gb|ADD94470.1| hypothetical protein [uncultured phage MedDCM-OCT-S06-C1041]
Length = 165
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTR-INATQGLVTLTLTPLKGRSPIIEHYLS 63
D + V DE + ++ E + + +G TP S + +
Sbjct: 74 NPDHLRGLGFDGVVMDEYGQMSSRLWSEVVRPSLVDRKGWGVFIGTPKGYNSFYDLYEAA 133
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSY 94
SD V +ET + ++ E +
Sbjct: 134 KKDSDWYVAIHRASETGYVSQDELDADKKTN 164
>gi|307946240|ref|ZP_07661575.1| putative TerL [Roseibium sp. TrichSKD4]
gi|307769904|gb|EFO29130.1| putative TerL [Roseibium sp. TrichSKD4]
Length = 522
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/226 (11%), Positives = 51/226 (22%), Gaps = 27/226 (11%)
Query: 5 EQGRDKWQ-SNTVHYVWFDEEPPE-----DVYFEGLTR------INA----TQGLVTLTL 48
E + VW +E D + + R + +G V +
Sbjct: 143 ENDIETLMKGREYSGVWLNELDTHAEGALDDAEQRVGRYPMKTIMLDADAPRRGFVVGDM 202
Query: 49 TPLKGRSPIIEHYLSASSSDRQVIRMTI-----NETPHYNE-QERKRIIDSYPLHEREAR 102
+ ++ + R E E RII++ H
Sbjct: 203 NAPTLDNWTYPVLVTNRAPGRAFHEQPSGRSSEAENRFNLEADYYNRIIENQDEHFVRRM 262
Query: 103 TKGEP--ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPF---AAGHLVWNRD 157
E ++ + I + +I + AA +
Sbjct: 263 VDNEFGYSRAGKPVYESFDRKIHVARSEIGFRPELELVVGIDISMNTLNPAAVFKQVHSP 322
Query: 158 SDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS 203
+ + + Y ALK+ + D +
Sbjct: 323 GRICNIDELYLGHGVGAARFGEALKARFSERYGEATSIRMFVDPAA 368
>gi|227512497|ref|ZP_03942546.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
gi|227084275|gb|EEI19587.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
Length = 452
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 25/252 (9%), Positives = 63/252 (25%), Gaps = 27/252 (10%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHY--LSASSS 67
+W++E +V+ + R + V + P + I +
Sbjct: 135 LWYEEAANFKSAEVFDQTNPTFIRQKSPWVNDVKVFYSYNPPRNPYDWINEWIAKQEQDP 194
Query: 68 DRQVIRMTINETPHYNEQERK----RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
+ T + ++ + G+ I ++ + +
Sbjct: 195 QCFIDTSTYLDDKLGITDSQQLTLIETYKKNDPEYYKWLYLGKVIGLGTNVYNMKLFHPL 254
Query: 124 INSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVVKNYR-----CREQTPIFH 177
++ +D G + + VI + Y R++ P
Sbjct: 255 TELINDDPLVTLYYSIDAGHINSATTCLAIGVTAKGKVILLHTYYYSPEHQSRKKAPSDL 314
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V +K + + + + P D G + + + I
Sbjct: 315 VPEIKYFEESMNYHVPIGKRTIDSAEGALRNEFVKEY------NEVWHGVAKSDEATMID 368
Query: 238 DMLDRMRSGRWK 249
+ + GR
Sbjct: 369 YVSSLLAQGRVY 380
>gi|254901080|ref|ZP_05261004.1| putative terminase large subunit from bacteriophage A118 [Listeria
monocytogenes J0161]
gi|254913970|ref|ZP_05263982.1| phage terminase [Listeria monocytogenes J2818]
gi|293591988|gb|EFG00323.1| phage terminase [Listeria monocytogenes J2818]
Length = 436
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 73/254 (28%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQG---LVTLTLTPL-KGRSPIIEHYLSASSSD 68
VW++E + + + R + + P S I E S+
Sbjct: 132 VWYEEAAEFKDAEEFDQTNTTFMRQKQKRAAFVRFFWSYNPPRNPYSWINEWADQQRSNS 191
Query: 69 RQVIRMTI---NETPHYNEQ--ERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
++ + +E N+Q + I GE + ++ + +
Sbjct: 192 TYLVHESSYLNDELGFVNDQMLDVINRIKENDYDYYRYLYLGEAVGLGTNVYNMNLFQKL 251
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ +D G L + +VI + Y ++ P +
Sbjct: 252 KTIPPDDRIIMIDFAIDTGHQVSATTCLALGFTAKRNVILLDTYYYSPANQVVKKAPSDY 311
Query: 178 VAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + P D D G + Y+ G+ + P G
Sbjct: 312 SKELREFMTKIVAKYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK--VDM 365
Query: 236 ISDMLDRMRSGRWK 249
+ + D + GR+
Sbjct: 366 VDFVQDLLAQGRFY 379
>gi|94317773|gb|ABF15050.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhimurium]
Length = 214
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 9 DKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASS 66
+ + +W +E Y + L +G P + +++
Sbjct: 115 KSLEG--IDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPP 172
Query: 67 SDRQVIRMTINETPHYNEQERKRIIDSYPLHE--REARTKG 105
D + ++ +E P ++ K I + +G
Sbjct: 173 EDTLIRKINYDENPFLSDTMLKVIDAARHRDPEGFVHVYEG 213
>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
305]
Length = 430
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/247 (9%), Positives = 57/247 (23%), Gaps = 26/247 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--------PPEDVYFEGLTRINATQGLVTLTLTPLKG 53
++ E+ + + V +E Y + + KG
Sbjct: 102 RSAERS-ENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRAIIGGVPKG 160
Query: 54 RSPIIEH-YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPL---HEREARTKGEP-- 107
++ E S + + + + + P E++ K +I+ + GE
Sbjct: 161 KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFID 220
Query: 108 ----ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
L S + + + + A +
Sbjct: 221 SSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALA------KRKGFVI 274
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
+ + + I + + P G + G+ + +
Sbjct: 275 YEIKKYSQLGTIELANKILA-EYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANS 333
Query: 224 TFDDGSN 230
SN
Sbjct: 334 ANSATSN 340
>gi|182677626|ref|YP_001831772.1| hypothetical protein Bind_0633 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633509|gb|ACB94283.1| protein of unknown function DUF264 [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 509
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/272 (11%), Positives = 74/272 (27%), Gaps = 38/272 (13%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRI--NATQG--LVTLTLTPLKGRSPIIEHYL 62
+K ++ +E P TR+ + L P+ ++
Sbjct: 114 EKILGLEFATIFLNEASQIPYSSAIIAFTRLAQVVPNIAQRAFVDLNPIGKNHWTNRLFI 173
Query: 63 SASSS----------DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP----I 108
D R+ + H +E +D+ P +R+ +G
Sbjct: 174 EHRDPITLLPLRNPHDYGSARLNPLDNAHNLSKEFLESLDNLPERQRKRFFEGVFADEIE 233
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG--------WHHPFAAGHLVWNRDSDV 160
I ++ + + E + +D NR +
Sbjct: 234 CVLWSYEQIAACRCSLDDIPVSERASVVVAVDPSGAANSQDLNADEVGIIIAARNR-NGC 292
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA-QYRRQGMKML 219
+++ + R+ ++ A+++ + D + + G + R +
Sbjct: 293 GFILDDRSLRDAPAVWGRTAVQA-----YHEYCADCIVAESNFGGAMVEAVIRAADPNVP 347
Query: 220 PECATFDDGSNGVEAGISDMLDR---MRSGRW 248
T G IS + R +GR+
Sbjct: 348 VRLVTASRGKAIRAEPISVLYQRGVVRHAGRF 379
>gi|298480957|ref|ZP_06999152.1| PBSX family phage terminase large subunit [Bacteroides sp. D22]
gi|298272980|gb|EFI14546.1| PBSX family phage terminase large subunit [Bacteroides sp. D22]
Length = 671
Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + + V +E + + + R+ +G + T P+ I + +
Sbjct: 110 DPEKIKGISNYKRVQLEEWSEFEHPDFKQLRKRLRGKKGQQIICTFNPISESHWIKKEF- 168
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ MT+ +E ++ R+ I
Sbjct: 169 -IDKDKWHDVPMTVTIAGKELPEELTKVKSVKKNAPRQILNL----RTKQIEEQAPNTVI 223
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ ++ V +G++ ++R D Y
Sbjct: 224 IQSTYLNNFWVVGSPDGTYGFYDEQCVADFEYDRVHDPDY 263
>gi|319762771|ref|YP_004126708.1| prophage mumc02, terminase, atpase subunit, putative
[Alicycliphilus denitrificans BC]
gi|317117332|gb|ADU99820.1| prophage MuMc02, terminase, ATPase subunit, putative
[Alicycliphilus denitrificans BC]
Length = 454
Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/218 (10%), Positives = 53/218 (24%), Gaps = 13/218 (5%)
Query: 7 GRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + + + V DE + ++ I+ + + TP + +
Sbjct: 118 NPDTARGFSAN-VLLDEFAFHQDSRAIWKALFPVISKPGLKLRVISTPNGKGNKFYDLM- 175
Query: 63 SASSSDRQVIRMTINE--TPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ + I + + + + + + + P
Sbjct: 176 TGADDGWSRHTTDIYQAVADGLPRNIEELRKGAGDDDLWAQEFELKWLDEASAWLPFELI 235
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPF---AAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ Q G G V+ DV++V + R T
Sbjct: 236 TACEHEAAGKPEHYQGGPCFVGVDIASRNDLFVIWVFELVGDVLWVREIIERRRITFAEQ 295
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG 215
L G + + + + + RR G
Sbjct: 296 DMLLD--GVFRRYRVIRACMDQTGMGEKPVEDAQRRHG 331
>gi|326536310|ref|YP_004300751.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage 133]
gi|299483391|gb|ADJ19485.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage 133]
Length = 606
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 28/282 (9%), Positives = 71/282 (25%), Gaps = 39/282 (13%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
A+ D + N+ ++ DE + + + + +T TP G +
Sbjct: 232 AFASSPDAVRGNSFSLIYIDETAFVQNWDDCWLAIQPVISSGRHSKIIMTTTPN-GMNHF 290
Query: 58 IEHYLSASSSDRQVIRMTINETPHYN------------EQERKRIIDSYPLHEREARTKG 105
+ + A + + + R I S + + G
Sbjct: 291 YDLWQGAINGTSGFRPYEATWVSVKDRLYNEADTFDDGWEFSARAIGSSSIEQFLQEHLG 350
Query: 106 EPILGSG------RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD 159
GS ++ + ++ + + + E + G + A +D
Sbjct: 351 NFAGGSNTLIDGTKLAVLFGQERIADQHEFIEFKPPVAGRKYIATLDSA---EGRGQDYH 407
Query: 160 VIYVVKNY-RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHD------KRSGEQLSAQY- 211
++++ EQ + H + +G ++
Sbjct: 408 ALHIIDVTDEQWEQAGVLHSNKISHLILADIIFLYLTRYNEAPVYIELNSTGVSIAKTLY 467
Query: 212 ----RRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ + G S + D + + K
Sbjct: 468 IDLEYEYVICDSYQDLGMKQTKRSKAVGCSTLKDLIEKNKLK 509
>gi|47096003|ref|ZP_00233605.1| phage terminase, large subunit, PBSX family [Listeria monocytogenes
str. 1/2a F6854]
gi|254937188|ref|ZP_05268885.1| phage terminase [Listeria monocytogenes F6900]
gi|47015600|gb|EAL06531.1| phage terminase, large subunit, PBSX family [Listeria monocytogenes
str. 1/2a F6854]
gi|258609792|gb|EEW22400.1| phage terminase [Listeria monocytogenes F6900]
Length = 436
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 30/254 (11%), Positives = 70/254 (27%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQG---LVTLTLTPL-KGRSPIIEHYLSASSSD 68
VW++E + + + R + + P S I E S+
Sbjct: 132 VWYEEAAEFKDAEEFDQTNTTFMRQKQKRAAFVRFFWSYNPPRNPYSWINEWADQQRSNS 191
Query: 69 RQVIRMTI---NETPHYNEQ--ERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
++ + +E N+Q + I GE + ++ + +
Sbjct: 192 TYLVHESSYLNDELGFVNDQMLDVINRIKENDYDYYRYLYLGEAVGLGTNVYNMNLFQKL 251
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR------EQTPIFH 177
+ +D G + + ++ Y ++ P +
Sbjct: 252 KTIPPDDRIIMIDFAIDTGHQVSATTCLALGFTAKKNVILLDTYYYSPANQVVKKAPSDY 311
Query: 178 VAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + P D D G + Y+ G+ + P
Sbjct: 312 SKELREFMTKIVAKYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGRK------VDM 365
Query: 236 ISDMLDRMRSGRWK 249
+ + D + GR+
Sbjct: 366 VDFVQDLLAQGRFY 379
>gi|265983712|ref|ZP_06096447.1| terminase large subunit [Brucella sp. 83/13]
gi|264662304|gb|EEZ32565.1| terminase large subunit [Brucella sp. 83/13]
Length = 384
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/254 (8%), Positives = 49/254 (19%), Gaps = 21/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 88 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 147
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 148 DRTVSMT---HMRTVENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 204
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + +
Sbjct: 205 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQ 264
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A+ A + + +L A+
Sbjct: 265 WARRAIA--LYHTHEADAIVAEVNKGGEMVAAVLAAEDSSVPVLKRRASRGKWLRA---- 318
Query: 236 ISDMLDRMRSGRWK 249
+ GR +
Sbjct: 319 -EPVAALYEQGRVR 331
>gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 346
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 6/162 (3%)
Query: 19 VWFDEEPPEDVYF-EGLTRINATQGL-VTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTI 76
+W +E Y + L +G P + +++ D + ++
Sbjct: 2 LWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEDTLIRKINY 61
Query: 77 NETPHYNEQERKRIIDSYPLHE--REARTKGEPILGSGRIFPI--VEEDIVINSLDIPEH 132
+E P ++ K I + +G P E V +
Sbjct: 62 DENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFG 121
Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ F A R VIY ++ +E
Sbjct: 122 PEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDEL 163
>gi|23501474|ref|NP_697601.1| terminase large subunit [Brucella suis 1330]
gi|23347378|gb|AAN29516.1| terminase large subunit, putative [Brucella suis 1330]
Length = 384
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 88 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 147
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEE 120
+ S M E + + I R GE + +
Sbjct: 148 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERLGALWSRDR 204
Query: 121 DIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + +D + + + T
Sbjct: 205 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 260
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 261 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 318
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 319 ---EPVAALYEQGRVR 331
>gi|300766315|ref|ZP_07076275.1| PBSX family phage terminase [Listeria monocytogenes FSL N1-017]
gi|300512961|gb|EFK40048.1| PBSX family phage terminase [Listeria monocytogenes FSL N1-017]
Length = 439
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 29/254 (11%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQG---LVTLTLTPL-KGRSPIIEHYLSASSSD 68
VW++E + + + R + + P S I E S+
Sbjct: 135 VWYEEAAEFKDAEEFDQTNTTFMRQKQKRAAFVRFFWSYNPPRNPYSWINEWADQQRSNS 194
Query: 69 RQVIRMTI---NETPHYNEQ--ERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
++ + +E N+Q + I GE + ++ + +
Sbjct: 195 TYLVHESSYLNDELGFVNDQMLDVINRIKENDYDYYRYLYLGEAVGLGTNVYNMNLFQKL 254
Query: 124 INSLDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPIFH 177
+ +D G L + +VI + Y ++ P +
Sbjct: 255 KTIPPDDRIIMIDFAIDTGHQVSATTCLALGFTAKRNVILLDTYYYSPANQVVKKAPSDY 314
Query: 178 VAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
L+ + + + P D D G + Y+ G+ + P G
Sbjct: 315 SKELREFMTKIVAKYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHP----VAKGKK--VDM 368
Query: 236 ISDMLDRMRSGRWK 249
I + D + GR+
Sbjct: 369 IDFVCDLLAQGRFY 382
>gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14]
Length = 536
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 10/191 (5%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDE----EPPEDVYFEGLTR-INATQGLVTLTLTPLKGRSP 56
G + +V+ ++ DE E D Y + T+ V +T TP G +
Sbjct: 162 FTAATGGSSIRGKSVNLMYLDEFAFVENDVDFYTSTYPVVTSGTKTKVIITSTPN-GMNL 220
Query: 57 IIEHYLSASSSDRQVIR--MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + +++ + ++ P ++ + + + + E + S +
Sbjct: 221 FYKIWTDSTNGKNNYVHNEAFWHDHPKRDQAWKDEQLRNMSERQFEQEFLCKFQGSSDTL 280
Query: 115 FPIVEEDI--VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
+ + + + + + + Y V + +
Sbjct: 281 LSPAKLEQLTYQDHIRELGGNRDFKIYEDPIKDASYVVTVDVSEGIGKDYSVISVFDTTE 340
Query: 173 TPIFHVAALKS 183
P VA L+S
Sbjct: 341 APFRQVAMLRS 351
>gi|311992670|ref|YP_004009538.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Ac42]
gi|298684453|gb|ADI96414.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Ac42]
Length = 619
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 7/109 (6%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTR-----INATQGLVTLTLTPLKGRSPI 57
AY D + N+ ++ DE + + + + +T TP G +
Sbjct: 247 AYASSPDAVRGNSFALIYIDETAFIQNWEDCWLAIQPVISSGRHSKIIMTTTPN-GMNHF 305
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
+ + A E+ D E R G
Sbjct: 306 YDLWQGAIKGKSGFRPYEATWVS-VKERLYTEAGDFDDGWEFSYRAIGS 353
>gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2]
Length = 547
Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/221 (9%), Positives = 61/221 (27%), Gaps = 25/221 (11%)
Query: 12 QSNTVHYVWFDEEPPE-----DVYFEGLTRINATQ-GLVTLTLTPLKGRSPIIEHYLSAS 65
+ + + ++ DE D +F + + + ++ +G + + +
Sbjct: 163 RGGSYNVIFLDEFAFIPNHIADDFFASVYPTITSGQSTKVIIVSTPRGMNHFYRMWHDSE 222
Query: 66 SSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEP---------------I 108
+ + +E P +E+ +++ I + + + + E +
Sbjct: 223 KGKSEYVATDVHWSEVPGRDEEWKEQTIANTSEQQFKIEFECEFLGSVNTLINPAKLRNL 282
Query: 109 LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
+ DI + + + + + A + VV YR
Sbjct: 283 VYEAPKTRNAGLDIYETPVKEHNYIITVDVARGLGNDYSAFIVF--DTTEFPYKVVAKYR 340
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA 209
E P+ + K A+ + +
Sbjct: 341 NNEIKPMLFPNIILDVAKGYNNAYLLIEVNDIGDQVASILQ 381
>gi|256369024|ref|YP_003106532.1| phage terminase large subunit, putative [Brucella microti CCM 4915]
gi|255999184|gb|ACU47583.1| phage terminase large subunit, putative [Brucella microti CCM 4915]
Length = 384
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 88 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 147
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 148 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 204
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 205 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 260
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 261 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 318
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 319 ---EPVAALYEQGRVR 331
>gi|296393586|ref|YP_003658470.1| terminase [Segniliparus rotundus DSM 44985]
gi|296180733|gb|ADG97639.1| Terminase [Segniliparus rotundus DSM 44985]
Length = 498
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 61/286 (21%)
Query: 12 QSNTVHYVWFDEE---PPEDVYFEGLTRI-NATQGLVTLTLT------------------ 49
+ T + DE D + V
Sbjct: 159 RGFTADLILLDELREHQSFDSWAAVTKTTMARPDAQVWCLSNAGDHLSVVLAHLRNIAHR 218
Query: 50 ----PLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRI--------------- 90
P + + + D V + P + ++R
Sbjct: 219 QLDWPDGKPDHVEDQAPDDEAEDDSVGIFEWSAPPGCDPKDRHAWAQANPALGVTITERA 278
Query: 91 ----IDSYPLHEREARTKGEP--ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH 144
+ P A + + G P + ++ I ++ G+D W+
Sbjct: 279 IASAYATDPAPVFAAEVLCQWPLTVTPGPFPPGSWDSTRDDNSTIATDSPRVVGLDMAWN 338
Query: 145 HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG 204
L RD + +V + + L + + +Q +
Sbjct: 339 RSTVTLALAGRRDDGMAHV--EITAQRAGSDWVAPWLAERREKIAAV----IVQANGAPA 392
Query: 205 EQLSAQYRRQGMKMLP-ECATFDDGSNGVEAGISDMLDRMRSGRWK 249
L A G+ ++ + D + +G+ +
Sbjct: 393 SSLVADLEAAGLPVIAWRGPDLGKATGA-------FHDLLATGKIR 431
>gi|9632854|ref|NP_049778.1| gp17'B unknown function [Enterobacteria phage T4]
gi|5354478|gb|AAD42685.1|AF158101_272 gp17'B unknown function [Enterobacteria phage T4]
gi|299780523|gb|ADJ39885.1| gp17'B [Enterobacteria phage T4T]
Length = 505
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 131 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 190
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 191 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 243
Query: 119 EEDI 122
++
Sbjct: 244 RQEH 247
>gi|9632853|ref|NP_049777.1| gp17'A unknown function [Enterobacteria phage T4]
gi|5354477|gb|AAD42684.1|AF158101_271 gp17'A unknown function [Enterobacteria phage T4]
gi|299780522|gb|ADJ39884.1| gp17'A [Enterobacteria phage T4T]
Length = 523
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 149 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 208
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 209 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 261
Query: 119 EEDI 122
++
Sbjct: 262 RQEH 265
>gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4]
Length = 469
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 15/114 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDTLIPTIRKPGSELWFSFNPAEEDGAVYRRFVKPYKAIIDKQG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILGSGRI 114
+ V +++ + P + + + ++ R GE G
Sbjct: 161 YYEDDEVYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYGDA 214
>gi|306842144|ref|ZP_07474813.1| Phage DNA packaging protein [Brucella sp. BO2]
gi|306287731|gb|EFM59162.1| Phage DNA packaging protein [Brucella sp. BO2]
Length = 366
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 70 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 129
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 130 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 186
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 187 IEQCFEENPPPLARIVVAVDPPASSGRASDACGIVVAGIDAEGVGHVLADE----SMTMA 242
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 243 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDTSVPVLKRRASRGKWLRA-- 300
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 301 ---EPVAALYEQGRVR 313
>gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
Length = 550
Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 10/134 (7%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRI-NATQGLVTLTLTPLKGRSPIIEH 60
+ + + ++ DE + +F + ++ + + ++ G + +
Sbjct: 161 SASAVRGMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSGKSTKVIIISTPHGMNQFYKL 220
Query: 61 Y--LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ +++ + ++ P +++ +++ I++ + + E + +
Sbjct: 221 WHDAERGANNYVATEVHWSQVPGRDDKWKQQTIENTSEAQFRVEFECEFLGSVDTLITPS 280
Query: 119 EEDIVINSLDIPEH 132
+ I+ I E+
Sbjct: 281 KLRIMPYKDPIQEN 294
>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
Length = 430
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 24/247 (9%), Positives = 61/247 (24%), Gaps = 26/247 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEE--------PPEDVYFEGLTRINATQGLVTLTLTPLKG 53
++ E+ + + V +E Y + + KG
Sbjct: 102 RSAERS-ENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRAIIGGVPKG 160
Query: 54 RSPIIEH-YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE---REARTKGEPIL 109
++ E S + + + + + P E++ K +I+ + + GE I
Sbjct: 161 KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFID 220
Query: 110 GSGRIFP-----IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
S S++ + G + + ++V
Sbjct: 221 SSSAELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLA------KRKGFIV 274
Query: 165 KNYRC-REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECA 223
+ + + + + P G + G+ + +
Sbjct: 275 DEIKKYSQLGTMELANRILA-EYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANS 333
Query: 224 TFDDGSN 230
SN
Sbjct: 334 ANSATSN 340
>gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 3/104 (2%)
Query: 14 NTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
+ V + DE +D+Y + + G + L TP R E + + +
Sbjct: 140 SAVALLLVDEASRVEDDLYMAMRPMLAVSGGTLWLMSTPWGKRGFFYEAW-ANGGPTWER 198
Query: 72 IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ + + P + + + E S +F
Sbjct: 199 VSVKAEDCPRFGAEYLEEERRVMGERIYRQEYCCEFGESSSAVF 242
>gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
Length = 549
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 22/212 (10%), Positives = 67/212 (31%), Gaps = 23/212 (10%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRINATQ-GLVTLTLTPLKGRSP 56
A + + + ++ DE D +F + ++ + ++ G +
Sbjct: 156 AASTSASAVRGMSFNVIFLDEFAFVPNHIADQFFSSVYPTVSSGKSTKVIIISTPHGMNM 215
Query: 57 IIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + A + + ++ P + +++ I + + + + E + +
Sbjct: 216 FYKLWHDAEQGKNEYLPTEVHWSQVPGRDAAWKEQTIKNTSEQQFKVEFECEFLGSVDTL 275
Query: 115 FPIVEEDIV--------------INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDV 160
+ + ++ +++ + G + ++A +V + +
Sbjct: 276 ISPSKLRTMPYVDPVAQNKGLAIYERVEAEHNYIITVDVSRGIGNDYSA-FVVVDTTTMP 334
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAW 192
VV YR E PI + K A+
Sbjct: 335 YKVVARYRNNEIKPIIFPNIIIDVAKNYNNAY 366
>gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9]
gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9]
Length = 549
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 17/174 (9%), Positives = 52/174 (29%), Gaps = 11/174 (6%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTRI-NATQGLVTLTLTPLKGRSP 56
A + + + ++ DE D +F + ++ + + ++ G +
Sbjct: 156 AASTSASAVRGMSFNVIFLDEFAFVPNHVADQFFSSVYPTISSGKSTKVIIISTPHGMNM 215
Query: 57 IIEHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + A + I +E P + +++ I + + + E + +
Sbjct: 216 FYKLWHDAERKANEYIPTEVHWSEVPGRDAAWKEQTIKNTSEQQFRVEFECEFLGSVDTL 275
Query: 115 FPIVEEDIVINSLDIPEHW---VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
+ ++ I E + + + A + D V+
Sbjct: 276 ISPSKLRTMVYGDPIAEKNGLSMYEKTIQGHTYVITADVSRGVSGDYSAFLVID 329
>gi|221201495|ref|ZP_03574534.1| putative TerL [Burkholderia multivorans CGD2M]
gi|221207949|ref|ZP_03580955.1| putative TerL [Burkholderia multivorans CGD2]
gi|221172134|gb|EEE04575.1| putative TerL [Burkholderia multivorans CGD2]
gi|221178763|gb|EEE11171.1| putative TerL [Burkholderia multivorans CGD2M]
Length = 473
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 33/261 (12%), Positives = 63/261 (24%), Gaps = 41/261 (15%)
Query: 1 LKAYEQGRD--KWQSNTVHYVWFDE--EPPEDVYFEGLTR-------INATQGLVTLTLT 49
A ++ K + + + W +E E + + R + T +
Sbjct: 119 FIALDRPEHERKLRGMQLTFAWLNEVKELAKPILDMLDLRVGRYPKDVRPTWYGLFGDTN 178
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRMT---INETPHYNEQERKRIIDSYPLHEREARTKGE 106
R I + + ER ID+ P E +G+
Sbjct: 179 APDSDHWYYTLAEETKPEGYAFFRQPGGVIRDGDRWVVNERAENIDNLPPGYYERGMQGK 238
Query: 107 --------------PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
++ + P + + ++ + GMDFG AA
Sbjct: 239 KFDWIKVNLGNEYGFVVDGKPVHPDYADSLHCKPFELSKSLPLWIGMDFGLTP--AAVIG 296
Query: 153 VWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA--- 209
+ LK + + G H +G+Q +
Sbjct: 297 QRKPMGG-WRIRSELVATSMGTQKFAIELKRHLAEIYPGFEVAG-VHGDPAGDQRAQADD 354
Query: 210 ------QYRRQGMKMLPECAT 224
R G + P
Sbjct: 355 ELTPFRMLRAAGFEAKPAPTN 375
>gi|6467533|gb|AAF13179.1|AF181080_1 putative gene transfer agent large terminase [Rhodobacter
capsulatus]
Length = 393
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 26/260 (10%), Positives = 63/260 (24%), Gaps = 25/260 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
Q + + W DE + + + + + T + +
Sbjct: 87 AQEPEALRGPQFDAAWVDELAKWRRAEETWDMLQFALRLGKHPQQVITTTPR---NVGVL 143
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG-EPILGSGRIFPI 117
++ V Y + + + R +G G ++
Sbjct: 144 KAILNNPSTVVTHAPTEANRAYLAESFLAEVQARYAGTRLGRQELEGVLLEDVEGALWTT 203
Query: 118 VEEDIVINSLDIPEHWVQ----IGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRC 169
+ + + + V +V+++
Sbjct: 204 AQLEGLRLASPPAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASV 263
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
R + + AA+ + + W + L + G ++ RQ ++P A
Sbjct: 264 RGRPTDWARAAIAAMER-----WGAEKLVAEVNQGGEMVESVLRQIDPLVPFKALRASRG 318
Query: 230 NGVEAGISDMLDRMRSGRWK 249
A + GR K
Sbjct: 319 KS--ARAEPVAALYEQGRVK 336
>gi|9632855|ref|NP_049779.1| gp17'' unknown function [Enterobacteria phage T4]
gi|5354479|gb|AAD42686.1|AF158101_273 gp17'' unknown function [Enterobacteria phage T4]
gi|299780524|gb|ADJ39886.1| gp17'' [Enterobacteria phage T4T]
Length = 416
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 42 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 101
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 102 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 154
Query: 119 EEDI 122
++
Sbjct: 155 RQEH 158
>gi|167754216|ref|ZP_02426343.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216]
gi|237711925|ref|ZP_04542406.1| predicted protein [Bacteroides sp. 9_1_42FAA]
gi|167658841|gb|EDS02971.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216]
gi|229454620|gb|EEO60341.1| predicted protein [Bacteroides sp. 9_1_42FAA]
Length = 529
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRSPII 58
+ +++ S+ DE ++ R + T + LT + +
Sbjct: 163 DPNFERFGSSEYTIAMVDEVSEISERAVEVLFSRLRWRTHETFKTPRMLLTTNPTINWVR 222
Query: 59 EHYLSASS-------SDRQVIRMTINETPHYN--EQERKRIIDSYPLHEREARTKGEPIL 109
++ + I ++ + P+ + + +E G
Sbjct: 223 SRFVQDENGDKVICREGEAYIPFSVFDNPNIAFRQVYEAALNKIRDQATKERLLYGNWDF 282
Query: 110 GSGRIFP----IVEEDIVI---NSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
++ I DF + + ++ +Y
Sbjct: 283 VEANDMAIYNSFDGSRHLVTGLKEKAYDPTKPLITVWDFNVAPQMSVLSAQIDYENRKVY 342
Query: 163 VVKNY----RCREQTPIFHVAALKSWGKWLPWAWPHD 195
+++ +E ++ D
Sbjct: 343 ILEEILGKPEEKENNTPALARKVRLKLYRDKHIGGVD 379
>gi|225017798|ref|ZP_03706990.1| hypothetical protein CLOSTMETH_01727 [Clostridium methylpentosum
DSM 5476]
gi|224949449|gb|EEG30658.1| hypothetical protein CLOSTMETH_01727 [Clostridium methylpentosum
DSM 5476]
Length = 466
Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 81/311 (26%), Gaps = 71/311 (22%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRINAT-QGLVTLTLTPLKG------- 53
YE+ WQ + + + FDE +F L+R +T + T
Sbjct: 104 YEKDLYAWQGSQIAMIAFDELTHFSKSQFFYMLSRNRSTCGVRPYVRATTNPDADSWVAE 163
Query: 54 --RSPIIEHYLSASSSDRQVIRM--TINETPHYNEQ------------------------ 85
+ +IR +N+ H+ +
Sbjct: 164 FIQWWWDPKTGYPIKERSGIIRYMVRLNDVIHWADTPQQLVEQTECDLNDCKSVTFIASS 223
Query: 86 ------------ERKRIIDSYPLHEREARTKGEPILGSGRIFPI-------VEEDIVINS 126
+ + PL ERE G + +++ +
Sbjct: 224 LKDNQILMKNDPGYLANLKALPLVERERLLSGNWKIKPAAGMYFKRSQIGAFLDEVPNDV 283
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC-------REQTPIFHVA 179
L W +D P A ++ + YV+ + +T
Sbjct: 284 LRWVRGWDLAATIDSETGKPAATAGVLIGKRKSGRYVIADVVNVRLSAMDVRKTIKNTAL 343
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
K+ + + P D Q K E G ++ E + EA M
Sbjct: 344 MDKAKYRRVKIKLPQDPGQAGKDQAESFIKFL--AGFDVMTERES-----GSKEARAEPM 396
Query: 240 LDRMRSGRWKV 250
+ ++G + V
Sbjct: 397 AAQWQAGNFDV 407
>gi|227522721|ref|ZP_03952770.1| terminase large subunit [Lactobacillus hilgardii ATCC 8290]
gi|227090169|gb|EEI25481.1| terminase large subunit [Lactobacillus hilgardii ATCC 8290]
Length = 452
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 25/252 (9%), Positives = 62/252 (24%), Gaps = 27/252 (10%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINAT---QGLVTLTLTPLKGRSPIIEHY--LSASSS 67
+W++E +V+ + R + V + P + I +
Sbjct: 135 LWYEEAANFKSAEVFDQTNPTFIRQKSPWVNDVKVFYSYNPPRNPYDWINEWIAKQEQDP 194
Query: 68 DRQVIRMTINETPHYNEQERK----RIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
+ T + ++ + G+ I ++ + +
Sbjct: 195 QCFIDTSTYLDDKLGITDSQQLTLIETYKKNDPEYYKWLYLGKVIGLGTNVYNMKLFHPL 254
Query: 124 INSLDIPEHWVQIGGMDFGWHH-PFAAGHLVWNRDSDVIYVVKNYR-----CREQTPIFH 177
++ +D G + + VI + Y R++ P
Sbjct: 255 TELINDDPLVTLYYSIDAGHINSATTCLAIGVTAKGKVILLHTYYYSPEHQSRKKAPSDL 314
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
V +K + + + P D G + + + I
Sbjct: 315 VPEVKFFEDSMNYQLPVGKRTIDSAEGALRNEFAKEY------NEVWHGVAKSDEATMID 368
Query: 238 DMLDRMRSGRWK 249
+ + GR
Sbjct: 369 YVSSLLAQGRVY 380
>gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
Length = 455
Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 26/260 (10%), Positives = 63/260 (24%), Gaps = 25/260 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
Q + + W DE + + + + + T + +
Sbjct: 149 AQEPEALRGPQFDAAWVDELAKWRRAEETWDMLQFALRLGKHPQQVITTTPR---NVGVL 205
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG-EPILGSGRIFPI 117
++ V Y + + + R +G G ++
Sbjct: 206 KAILNNPSTVVTHAPTEANRAYLAESFLAEVQARYAGTRLGRQELEGVLLEDVEGALWTT 265
Query: 118 VEEDIVINSLDIPEHWVQ----IGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRC 169
+ + + + V +V+++
Sbjct: 266 AQLEGLRLASPPAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASV 325
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
R + + AA+ + + W + L + G ++ RQ ++P A
Sbjct: 326 RGRPTDWARAAIAAMER-----WGAEKLVAEVNQGGEMVESVLRQIDPLVPFKALRASRG 380
Query: 230 NGVEAGISDMLDRMRSGRWK 249
A + GR K
Sbjct: 381 KS--ARAEPVAALYEQGRVK 398
>gi|30044056|ref|NP_835653.1| similar to terminase DNA packaging enzyme, large subunit
[Rhodothermus phage RM378]
Length = 508
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 30/269 (11%), Positives = 60/269 (22%), Gaps = 29/269 (10%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEG---LTRINATQGLVTLTLTPLKGRSPII 58
+A D +S ++ + +E E + + AT G + T +
Sbjct: 136 RAVSSKSDSGRSESITLLIVEEAAFISNMEELWASVQQTLATGGKCIVNSTYNGVGNWYE 195
Query: 59 EHYLSASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP 116
+A + ++ P +E+ + P P + P
Sbjct: 196 RTIRAAKEGKSEFKYFGIKWSDHPERDEKWFEEQKRLLPPRVFAQEILCIPQGSGENVIP 255
Query: 117 IV--EEDIVINSL------DIPEHWVQIGGMDFGWHHPF---------AAGHLVWNRDSD 159
E+ I+ D E + + G L + +
Sbjct: 256 FHLIREEEFIDPFVVKYGGDYWEWYRKPGYYFISVDPASGRGEDRSAVGVQVLWVDPQTL 315
Query: 160 VIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
I V + + + +K G L
Sbjct: 316 TIEQVAEFASDKTSLPVMRQVIKQIYDEFKPQL---IFIETNGIGMGLYQFMEAY----T 368
Query: 220 PECATFDDGSNGVEAGISDMLDRMRSGRW 248
P + G + GR
Sbjct: 369 PSIVGYYTTQRKKVHGSDLLAKLYEDGRL 397
>gi|23455799|ref|NP_695170.1| putative terminase large subunit [Lactobacillus phage phig1e]
gi|7519414|pir||T13204 hypothetical protein R447 - Lactobacillus phage phi-gle
gi|1926348|emb|CAA66780.1| Rorf447 [Lactobacillus phage phig1e]
Length = 447
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 59/258 (22%), Gaps = 35/258 (13%)
Query: 19 VWFDEEP---PEDVYFEG------LTRINATQGLVTLTLTPL-KGRSPIIEHYLSASSSD 68
VW++E DV+ + Q V + P I E S D
Sbjct: 141 VWYEEAANMKSSDVFDQANPTFIRQKPEWLDQVKVFYSYNPPKNPYDWINEWIDKVSKDD 200
Query: 69 RQVIR---MTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+I + ++Q I R + ++
Sbjct: 201 NYLIDTSDYRCDVRGFTSKQTLDLIEQYKKNDYEYYRWLYLGEVIGLGTSIYNPS--LLK 258
Query: 126 SLDIPEHWVQIGGMDFGWHH-----PFAAGHLVWNRDSDVIYVVKNYRC-----REQTPI 175
L++ I + F + VI + Y ++ P
Sbjct: 259 PLEVFPDDDYIKSLYFSQDSGQQVSATTELCIALTAKKRVILLDTYYYSPAHQSVKKPPS 318
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQL----SAQYRRQGMKMLPECATFDDGSNG 231
L ++ W + +++ G
Sbjct: 319 ELADELYAFEDSREKQWHKKAWKRSADEATSDYAIDHEYFKKYGRHWHHVNKIEKTAM-- 376
Query: 232 VEAGISDMLDRMRSGRWK 249
I + D + +GR+
Sbjct: 377 ----IDHVQDLLATGRFY 390
>gi|293372937|ref|ZP_06619306.1| phage terminase, large subunit, PBSX family [Bacteroides ovatus SD
CMC 3f]
gi|292632005|gb|EFF50614.1| phage terminase, large subunit, PBSX family [Bacteroides ovatus SD
CMC 3f]
Length = 671
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + + V +E + + + R+ +G + T P+ I + +
Sbjct: 110 DPEKIKGISNYKRVQLEEWSEFEHPDFKQLRKRLRGKKGQQIICTFNPISESHWIKKEF- 168
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ MT+ +E ++ R+ I
Sbjct: 169 -IDKDKWHDVPMTVTIAGKELPKELTKVKSVKKNAPRQILNL----RTKQIEEQAPNTVI 223
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ ++ V +G++ ++R D Y
Sbjct: 224 IQSTYLNNFWVVGSPDGTYGFYDEQCVADFEYDRVHDPDY 263
>gi|9632591|ref|NP_049776.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage T4]
gi|137951|sp|P17312|TERL_BPT4 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein Gp17; AltName: Full=Terminase large subunit
gi|5354215|gb|AAD42422.1|AF158101_9 gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage T4]
gi|15201|emb|CAA36641.1| unnamed protein product [Enterobacteria phage T4]
gi|299780521|gb|ADJ39883.1| large terminase protein [Enterobacteria phage T4T]
Length = 610
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 348
Query: 119 EEDI 122
++
Sbjct: 349 RQEH 352
>gi|228861099|ref|YP_002854122.1| gp17 terminase subunit [Enterobacteria phage RB51]
gi|227438773|gb|ACP31085.1| gp17 terminase subunit [Enterobacteria phage RB51]
Length = 610
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSTLAQF 348
Query: 119 EEDI 122
++
Sbjct: 349 RQEH 352
>gi|228861479|ref|YP_002854500.1| gp17 terminase subunit [Enterobacteria phage RB14]
gi|227438495|gb|ACP30808.1| gp17 terminase subunit [Enterobacteria phage RB14]
Length = 610
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 348
Query: 119 EEDI 122
++
Sbjct: 349 RQEH 352
>gi|116326387|ref|YP_803107.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32]
gi|115343980|gb|ABI94989.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32]
Length = 610
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSTLAQF 348
Query: 119 EEDI 122
++
Sbjct: 349 RQEH 352
>gi|330858684|ref|YP_004415059.1| putative terminase subunit nuclease and ATPase [Shigella phage
Shfl2]
gi|291290383|dbj|BAI83178.1| terminase subunit nuclease and ATPase [Enterobacteria phage AR1]
gi|327397618|gb|AEA73120.1| putative terminase subunit nuclease and ATPase [Shigella phage
Shfl2]
Length = 610
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSTLAQF 348
Query: 119 EEDI 122
++
Sbjct: 349 RQEH 352
>gi|237716206|ref|ZP_04546687.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|260170622|ref|ZP_05757034.1| putative terminase [Bacteroides sp. D2]
gi|262407814|ref|ZP_06084362.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_22]
gi|294644829|ref|ZP_06722572.1| phage terminase, large subunit, PBSX family [Bacteroides ovatus SD
CC 2a]
gi|294807633|ref|ZP_06766426.1| phage terminase, large subunit, PBSX family [Bacteroides
xylanisolvens SD CC 1b]
gi|315918966|ref|ZP_07915206.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|229443853|gb|EEO49644.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354622|gb|EEZ03714.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_22]
gi|292639862|gb|EFF58137.1| phage terminase, large subunit, PBSX family [Bacteroides ovatus SD
CC 2a]
gi|294445069|gb|EFG13743.1| phage terminase, large subunit, PBSX family [Bacteroides
xylanisolvens SD CC 1b]
gi|313692841|gb|EFS29676.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 671
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + + V +E + + + R+ +G + T P+ I + +
Sbjct: 110 DPEKIKGISNYKRVQLEEWSEFEHPDFKQLRKRLRGKKGQQIICTFNPISESHWIKKEF- 168
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ MT+ +E ++ R+ I
Sbjct: 169 -IDKDKWHDVPMTVTIAGKELPKELTKVKSVKKNAPRQILNL----RTKQIEEQAPNTVI 223
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ ++ V +G++ ++R D Y
Sbjct: 224 IQSTYLNNFWVVGSPDGAYGFYDEQCVADFEYDRVHDPDY 263
>gi|220702483|pdb|3EZK|A Chain A, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702484|pdb|3EZK|B Chain B, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702485|pdb|3EZK|C Chain C, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702486|pdb|3EZK|D Chain D, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702487|pdb|3EZK|E Chain E, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
Length = 577
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ DE D + I++ + + T G +
Sbjct: 236 AYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 295
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 296 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 348
Query: 119 EEDI 122
++
Sbjct: 349 RQEH 352
>gi|237721102|ref|ZP_04551583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449937|gb|EEO55728.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 671
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + + V +E + + + R+ +G + T P+ I + +
Sbjct: 110 DPEKIKGISNYKRVQLEEWSEFEHPDFKQLRKRLRGKKGQQIICTFNPISESHWIKKEF- 168
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ MT+ +E ++ R+ I
Sbjct: 169 -IDKDKWHDVPMTVTIAGKELPKELTKVKSVKKNAPRQILNL----RTKQIEEQAPNTVI 223
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ ++ V +G++ ++R D Y
Sbjct: 224 IQSTYLNNFWVVGSPDGTYGFYDEQCVADFEYDRVHDPDY 263
>gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
Length = 471
Score = 45.2 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 22/211 (10%), Positives = 53/211 (25%), Gaps = 21/211 (9%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTR----INATQG---LVTLTLTPLKGRS---P 56
+++ S W +E E Y +R +N G + +TL P K
Sbjct: 147 ERYGSVEYTGGWIEEGGEVNFGAYDTLKSRVGRHLNDKYGLLGRIFVTLNPKKNWCHTVF 206
Query: 57 IIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFP 116
+ ++ + + P + ++ +++ G
Sbjct: 207 WKPFKAGQLPDKVKFLQALVQDNPFIDPGYIDNLMSITDKVKKQRLLYGNFDYDDDDNAL 266
Query: 117 IVEE---DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + DI N + + + + VV+ + +
Sbjct: 267 MEYDSINDIFTNEFVVEGKKYITADIARFGSDKSVVMVW------NGLRVVEIRKFEKMR 320
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSG 204
++ H + D G
Sbjct: 321 TTKVADEIEKIRNKYGIPLSHVVVDEDGVGG 351
>gi|253567972|ref|ZP_04845383.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251842045|gb|EES70125.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|295084497|emb|CBK66020.1| phage terminase, large subunit, PBSX family [Bacteroides
xylanisolvens XB1A]
Length = 671
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + + V +E + + + R+ +G + T P+ I + +
Sbjct: 110 DPEKIKGISNYKRVQLEEWSEFEHPDFKQLRKRLRGKKGQQIICTFNPISESHWIKKEF- 168
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ MT+ +E ++ R+ I
Sbjct: 169 -IDKDKWHDVPMTVTIAGKELPKELTKVKSVKKNAPRQILNL----RTKQIEEQAPNTVI 223
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ ++ V +G++ ++R D Y
Sbjct: 224 IQSTYLNNFWVVGSPDGAYGFYDEQCVADFEYDRVHDPDY 263
>gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5]
Length = 469
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDTLIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKELIDTQG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILG 110
D V +++ + P + + + ++ R GE
Sbjct: 161 YYEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDAN 210
>gi|160885920|ref|ZP_02066923.1| hypothetical protein BACOVA_03925 [Bacteroides ovatus ATCC 8483]
gi|156108733|gb|EDO10478.1| hypothetical protein BACOVA_03925 [Bacteroides ovatus ATCC 8483]
Length = 671
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + + V +E + + + R+ +G + T P+ I + +
Sbjct: 110 DPEKIKGISNYKRVQLEEWSEFEHPDFKQLRKRLRGKKGQQIICTFNPISESHWIKKEF- 168
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI 122
+ MT+ +E ++ R+ I
Sbjct: 169 -IDKDKWHDVPMTVTIAGKELPKELTKVKSVKKNAPRQILNL----RTKQIEEQAPNTVI 223
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
+ ++ V +G++ ++R D Y
Sbjct: 224 IQSTYLNNFWVVGSPDGTYGFYDEQCVADFEYDRVHDPDY 263
>gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
Length = 550
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 11/114 (9%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTR--INATQGLVTLTLTPLKGRS 55
A + + + ++ DE + +F + + V + TP G +
Sbjct: 157 AASTSASAVRGMSFNILFLDEFAFVPNHVAEQFFASVYPTITSGKSTKVIIISTPN-GMN 215
Query: 56 PIIEHYLSASSSDRQVIR--MTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
+ + A + + ++ P + + ++ I + + + +
Sbjct: 216 HFYKMWEDARRGKNDYVTNEVHWSQVPGRDAKWKEETIKNTSPRQFAQEFECDF 269
>gi|238924473|ref|YP_002937989.1| hypothetical protein EUBREC_2114 [Eubacterium rectale ATCC 33656]
gi|238876148|gb|ACR75855.1| Hypothetical protein EUBREC_2114 [Eubacterium rectale ATCC 33656]
Length = 482
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 29/242 (11%), Positives = 57/242 (23%), Gaps = 63/242 (26%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDVYF--EGLTRINATQG---LVTLTLTPLKGRS---- 55
++ D WQ + + + FDE Y L+R G V T P
Sbjct: 110 DEDCDDWQGSQLTMIGFDELTHFSEYQFFYMLSRNRTDSGVKPYVRATCNPDADSWVAEF 169
Query: 56 --PIIEHYLSASSSDR-------------------------------------------- 69
I +R
Sbjct: 170 ISWWINQETGYPIPERSGVIRWMVRLNEVVTWFDSREEAVQGAIENGVKPEQAETMPKSV 229
Query: 70 QVIRMTINETPHYNEQE--RKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSL 127
I T+++ + + + + L +RE G + + + +
Sbjct: 230 TFIASTLHDNKILMKNDPGYLANLQAMTLVQRERLLHGNWKIKAAAGLMFKRVKVNMLEE 289
Query: 128 DIPEHWVQIGGMDFG------WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
P+ G D P ++ + + Y+V + R + +
Sbjct: 290 IPPDVIKWARGWDLAATSEDEKGDPAYTAGVLIGKRRNGRYIVADVINRRLSSSDVREII 349
Query: 182 KS 183
K
Sbjct: 350 KQ 351
>gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2]
gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2]
gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
Length = 469
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDTLIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKAIIDKQG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILG 110
D V +++ + P + + + ++ R GE
Sbjct: 161 YYEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDAN 210
>gi|148643731|ref|YP_001274244.1| large terminase subunit [Methanobrevibacter smithii ATCC 35061]
gi|148552748|gb|ABQ87876.1| large terminase subunit [Methanobrevibacter smithii ATCC 35061]
Length = 452
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDVYF-EGLTRINATQGL-------VTLTLTP--LKGR 54
E+ ++K++S H + DE + + L R + P G
Sbjct: 132 EKDKEKFKSRAYHKIIVDEASEFEKVNLQFLNRSLRGTDKLMTFPLAIYYISNPADADGS 191
Query: 55 SPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI 114
+ + E ++ M P+ ++++ + + + + G
Sbjct: 192 TYLNEKFVKGQYP---FFEMNFWHNPYIDKEKYLANLRELSKADYQYQI-GNWDYEIRAG 247
Query: 115 FPIVEEDI 122
+ I
Sbjct: 248 DVFDYDTI 255
>gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3]
Length = 469
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDTLIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKAIIDKQG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILG 110
D V +++ + P + + + ++ R GE
Sbjct: 161 YYEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDAN 210
>gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 477
Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 10/115 (8%), Positives = 28/115 (24%), Gaps = 15/115 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + + ++
Sbjct: 110 FDVAWVEEAETVSEKSLDILIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKDIIDDKG 169
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILGSGRIF 115
D V +++ + P E+ + + ++ GE
Sbjct: 170 YYEDDDLYVGKVSYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANYDDAI 224
>gi|163842863|ref|YP_001627267.1| hypothetical protein BSUIS_A0614 [Brucella suis ATCC 23445]
gi|163673586|gb|ABY37697.1| protein of unknown function DUF264 [Brucella suis ATCC 23445]
Length = 411
Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 54/256 (21%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + + T
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACSIVVAGIDAEGVGHVLADE----SMTMA 287
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 288 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 345
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 346 ---EPVAALYEQGRVR 358
>gi|254718736|ref|ZP_05180547.1| Phage DNA packaging protein [Brucella sp. 83/13]
Length = 411
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 21/254 (8%), Positives = 49/254 (19%), Gaps = 21/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTVENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + +
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQ 291
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A+ A + + +L A+
Sbjct: 292 WARRAIA--LYHTHEADAIVAEVNKGGEMVAAVLAAEDSSVPVLKRRASRGKWLRA---- 345
Query: 236 ISDMLDRMRSGRWK 249
+ GR +
Sbjct: 346 -EPVAALYEQGRVR 358
>gi|306838714|ref|ZP_07471549.1| Phage DNA packaging protein [Brucella sp. NF 2653]
gi|306406201|gb|EFM62445.1| Phage DNA packaging protein [Brucella sp. NF 2653]
Length = 430
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 21/254 (8%), Positives = 49/254 (19%), Gaps = 21/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTVENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + +
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQ 310
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A+ A + + +L A+
Sbjct: 311 WARRAIA--LYHTHEADAIVAEVNKGGEMVAAVLAAEDSSVPVLKRRASRGKWLRA---- 364
Query: 236 ISDMLDRMRSGRWK 249
+ GR +
Sbjct: 365 -EPVAALYEQGRVR 377
>gi|317474936|ref|ZP_07934205.1| hypothetical protein HMPREF1016_01184 [Bacteroides eggerthii
1_2_48FAA]
gi|316908839|gb|EFV30524.1| hypothetical protein HMPREF1016_01184 [Bacteroides eggerthii
1_2_48FAA]
Length = 427
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 18/217 (8%), Positives = 51/217 (23%), Gaps = 26/217 (11%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED------VYFEGLTRINATQGLVTLTLTPLKGRSPII 58
+ +++ S+ DE ++ R + T + LT + +
Sbjct: 61 DPNFERFGSSEYTIAMVDEVSEISERAVEVLFSRLRWRTHETFKTPRMLLTTNPTINWVR 120
Query: 59 EHYLSASS-------SDRQVIRMTINETPHYN--EQERKRIIDSYPLHEREARTKGEPIL 109
++ + I ++ + P+ + + +E G
Sbjct: 121 SRFVQDENGDKVICREGEAYIPFSVFDNPNIAFRQVYEAALNKIRDQATKERLLYGNWDF 180
Query: 110 GSGRIFPIVEE-------DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
I + I DF + + ++ +Y
Sbjct: 181 VEANDMAIYNSFDGSRHLVTGLKEKAYDPTKPLITVWDFNVAPQMSVLSAQIDYENRKVY 240
Query: 163 VVKNY----RCREQTPIFHVAALKSWGKWLPWAWPHD 195
+++ +E ++ D
Sbjct: 241 ILEEILGKPEEKENNTPALARKVRLKLYRDKHIGGVD 277
>gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1]
gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1]
Length = 469
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDSLIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKELIDTQG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILG 110
D V +++ + P + + + ++ R GE
Sbjct: 161 YYEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDAN 210
>gi|82699481|ref|YP_414055.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
biovar Abortus 2308]
gi|189023809|ref|YP_001934577.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
gi|82615582|emb|CAJ10565.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar
Abortus 2308]
gi|189019381|gb|ACD72103.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
Length = 380
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 88 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 147
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 148 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 204
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 205 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 255
>gi|167753387|ref|ZP_02425514.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
gi|167658012|gb|EDS02142.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
Length = 472
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 23/225 (10%), Positives = 60/225 (26%), Gaps = 25/225 (11%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTR----INATQG---LVTLTLTPLKGRSPIIE 59
+++ S W +E E Y TR +N G + ++ P ++ +
Sbjct: 149 ERYGSVEYTGGWIEEGGEVNFGAYDTLKTRIGRHLNDKYGILRKLFISCNP--KKNWMHS 206
Query: 60 HYLSASSSD-----RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG-- 112
+ + + + + + + P + + + + ++E KG
Sbjct: 207 TFYKPAKAGTLPGHQIYLAALVQDNPFIEKDYIEALKSTTDKVKKERLLKGNWDYDDNPN 266
Query: 113 -RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+I + I + A + D +++
Sbjct: 267 ALCSYDNIREIFYPKIHTRTGIKYITADIARFGSDRARILVW-----DGWAIIEQVSFDR 321
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
A ++S + + + G + R G
Sbjct: 322 SATTEIAACIESLAAKHR-IPRYRIIADEDGVGGGVVDMCRISGF 365
>gi|255262025|ref|ZP_05341367.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255104360|gb|EET47034.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 510
Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 60/262 (22%), Gaps = 30/262 (11%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGL--TRINATQGLVTLTLTPLKGRSPII 58
++ + W DE + + R+ V +T TP +
Sbjct: 99 ASDPERLRGPQFDAAWVDELAKWKKGQEAWDMLQFGMRLGDDP-RVCVTTTP----RNVG 153
Query: 59 EHYLSASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEPIL-GSGRIF 115
+ S T H + + Y G + G ++
Sbjct: 154 VLRSLLARSSTVTAHGTTEANAAHLADAFLDEVRTRYAGTRLGRQELDGVLLADAEGALW 213
Query: 116 --PIVEEDIVINSLDIPEHWVQIGGMDFG--WHHPFAAGHLVWNRDSD----VIYVVKNY 167
+E V V + G + D YV+++
Sbjct: 214 TSKGLEASHVEVVPQCDRVLVSVDPPVTGHMGSDDCGIIVVGVTMDGPPQDWRAYVIEDA 273
Query: 168 RCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSA-QYRRQGMKMLPECATFD 226
+P+ A + A + L + G L R+ +
Sbjct: 274 TVAAASPLEWAEAAVA-AYHRHGA---ECLVAEVNQGGSLVEAVVRQVDPLVSYTSVRAS 329
Query: 227 DGSNGVEAGISDMLDRMRSGRW 248
G A + GR
Sbjct: 330 KGK---VARAEPVAALYEQGRV 348
>gi|78213237|ref|YP_382016.1| hypothetical protein Syncc9605_1712 [Synechococcus sp. CC9605]
gi|78197696|gb|ABB35461.1| hypothetical protein Syncc9605_1712 [Synechococcus sp. CC9605]
Length = 438
Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 32/253 (12%), Positives = 73/253 (28%), Gaps = 32/253 (12%)
Query: 10 KWQSNTVHYVWFDEEPPEDVYFEGLT-----RINATQG--LVTLTLTPLKGRSPIIEHY- 61
K Q + ++++D+ E L R T PL S I Y
Sbjct: 38 KIQGEDLSHIFWDKLGQESDPQVVLRARSSMRTTDPTVVPKFIATANPLGPGSWWIRDYV 97
Query: 62 LSASSSDRQV------------IRMTINETPH--YNEQERKRIIDSYPLHERE--ARTKG 105
++ + +R ++ T+ + P+ +Q + S E A G
Sbjct: 98 VTKALPNRIFNCEFFGAQPAVWVKSTLRDNPYLSNPDQYEAELRASCFGDESNIAAEVLG 157
Query: 106 EP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
E + +G + + + D W+ + + + + V
Sbjct: 158 EWGQVTAGFFGSCLSIERSMLPRDFEVPWLADSDGQLRYETKAKHCWIGGDWGTASPACV 217
Query: 165 KNYRCREQTPIFHVAALKSW------GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKM 218
++ L +++ P + ++ + Q+ + +K
Sbjct: 218 VLMSQLQEPMSIAGKHLARGSWVCVDAEYVYGVQPDGSKEWNRGDRTLTAPQFVER-VKT 276
Query: 219 LPECATFDDGSNG 231
L + F G+
Sbjct: 277 LYQRHGFPKGAIS 289
>gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 14 NTVHYVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV 71
+ V + DE +D+Y + + G + L TP R E + + +
Sbjct: 140 SAVTLLLIDEASRVGDDLYMAMRPMLAVSAGTLWLMSTPHGKRGFFYEAW-ANGGETWER 198
Query: 72 IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ + + P + + + E SG +F
Sbjct: 199 VSVKAEDCPRFKAEYLEEERQVMGERIYRQEYCCEFGETSGAVF 242
>gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7]
Length = 469
Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 15/114 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E ++ I + + P + + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDTLISTIRKPGSELWFSFNPSEEDGAVYQRFVKPYKAIIDKKG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILGSGRI 114
D V ++ + P + + + ++ R GE
Sbjct: 161 YYEDDDLYVGNVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYDDA 214
>gi|66391670|ref|YP_239195.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB43]
gi|62288758|gb|AAX78741.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB43]
Length = 609
Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 38/129 (29%), Gaps = 9/129 (6%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
A+ D + N+ ++ DE D + I++ + L T G +
Sbjct: 234 AFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFY 293
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A + T T ++R+ + + +G
Sbjct: 294 DIWNAAVEGKSGFVPYTAIWT-----SVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAF 348
Query: 119 EEDIVINSL 127
++ +
Sbjct: 349 LQEHCAEFM 357
>gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6]
gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6]
Length = 505
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 53/177 (29%), Gaps = 14/177 (7%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTL-TLTPLKGRSPI 57
K+ E D +S + DE +++ L + G + + TP +
Sbjct: 166 FKSAE-TPDNLRSEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGGILVKISTPWGTGNHF 224
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIF 115
+ Y+ + + E +E K ++ + G+ G
Sbjct: 225 YDSYIKGELQAKMLEEG---EGIPEDELRYKSFKFPSWVNPYLSKRFLMGK-KKDLGEDN 280
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
P+ ++ ++ + F + + ++IY++ ++
Sbjct: 281 PVWLQEYCAEFIEDDTTVFSTAHVQACLSDAF---ETHY-KTENLIYLIDEGERNKE 333
>gi|34419588|ref|NP_899601.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40]
gi|13661164|dbj|BAB41133.1| gp17v [Bacteriophage KVP40]
gi|34333269|gb|AAQ64424.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40]
Length = 600
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/284 (10%), Positives = 77/284 (27%), Gaps = 37/284 (13%)
Query: 3 AYEQGRDKWQSNTVHYVWFDE---EPPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPI 57
AY G D + + ++ DE P D +++ + + V LT TP G +
Sbjct: 222 AYASGSDAVRGKSFSMIYVDECAFVPGFDDFWKATFPVISSGEESKVVLTSTPN-GLNHY 280
Query: 58 IEHYLSASSSDRQVIRMT----------INETPHYN-EQERKRIIDSYPLHEREARTKGE 106
+ + +A T + + E ++ I +
Sbjct: 281 HDMWNAAVQGISTFEPYTTTWRAVQNRLYKDGEFDDGEAFKRETIGNTSREAFSQEHLCN 340
Query: 107 PILGSGRIFPIVEEDIV--INSLDIPEHWVQIGGMDFGWHHP-FAAGHLVWNRDSDVIYV 163
+ +G + + + I+ + + W + G + +D +++
Sbjct: 341 FLGTAGTLINGFKLSKMKGIDVVKDSDGWCVYKKPEEGHKYILTVDTSEGRGQDYHALHM 400
Query: 164 VK------NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLS--AQYRRQG 215
+ L + + + + + S +L +R
Sbjct: 401 IDVTSYPFEQVAVFHDNKTSHLLLPAIIMKQAYRYNEAYVYCEIASTGELVMNELFRDLE 460
Query: 216 MKML---------PECATFDDGSNGVEAGISDMLDRMRSGRWKV 250
+ + G S + D + + K+
Sbjct: 461 YENVIMEERASGGRRGLGLKPNKKTKAIGCSTLKDLIEKDQLKI 504
>gi|254709718|ref|ZP_05171529.1| Phage DNA packaging protein [Brucella pinnipedialis B2/94]
gi|256031209|ref|ZP_05444823.1| Phage DNA packaging protein [Brucella pinnipedialis M292/94/1]
Length = 411
Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 287
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 288 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 345
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 346 ---EPVAALYEQGRVR 358
>gi|161618560|ref|YP_001592447.1| hypothetical protein BCAN_A0599 [Brucella canis ATCC 23365]
gi|225852113|ref|YP_002732346.1| hypothetical protein BMEA_A0624 [Brucella melitensis ATCC 23457]
gi|254701380|ref|ZP_05163208.1| Phage DNA packaging protein [Brucella suis bv. 5 str. 513]
gi|254703925|ref|ZP_05165753.1| Phage DNA packaging protein [Brucella suis bv. 3 str. 686]
gi|254713724|ref|ZP_05175535.1| Phage DNA packaging protein [Brucella ceti M644/93/1]
gi|254717218|ref|ZP_05179029.1| Phage DNA packaging protein [Brucella ceti M13/05/1]
gi|256044294|ref|ZP_05447198.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256060717|ref|ZP_05450881.1| Phage DNA packaging protein [Brucella neotomae 5K33]
gi|256113127|ref|ZP_05454004.1| Phage DNA packaging protein [Brucella melitensis bv. 3 str. Ether]
gi|256159312|ref|ZP_05457102.1| Phage DNA packaging protein [Brucella ceti M490/95/1]
gi|256254617|ref|ZP_05460153.1| Phage DNA packaging protein [Brucella ceti B1/94]
gi|161335371|gb|ABX61676.1| protein of unknown function DUF264 [Brucella canis ATCC 23365]
gi|225640478|gb|ACO00392.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|326408609|gb|ADZ65674.1| Phage DNA packaging protein [Brucella melitensis M28]
gi|326538330|gb|ADZ86545.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 411
Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 287
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 288 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 345
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 346 ---EPVAALYEQGRVR 358
>gi|261317250|ref|ZP_05956447.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94]
gi|265988289|ref|ZP_06100846.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1]
gi|261296473|gb|EEX99969.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94]
gi|264660486|gb|EEZ30747.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1]
Length = 430
Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 306
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 307 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 364
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 365 ---EPVAALYEQGRVR 377
>gi|114766464|ref|ZP_01445429.1| terminase, large subunit, putative [Pelagibaca bermudensis
HTCC2601]
gi|114541321|gb|EAU44370.1| terminase, large subunit, putative [Roseovarius sp. HTCC2601]
Length = 434
Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 25/260 (9%), Positives = 57/260 (21%), Gaps = 29/260 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + + V +T TP +
Sbjct: 130 DPEGLRGPQFDAAWVDELAKWKKARETWDMLQFALRLGERPQVCVTTTP----RNVGVLK 185
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG------EPILGSGR 113
V R + + + R G + L +
Sbjct: 186 ELLELDSTVVTHAKTEANRANLAASFLREVRARYGNTRLARQELDGVLVTDVDGTLWTQA 245
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAG----HLVWNRDSDVIYVVKNYRC 169
+ + D V + + +V+++
Sbjct: 246 VLERARGAEMPERFDRIVVAVDPPAGEGQGADACGILVAGAVCAGPPQAWRAWVLEDASV 305
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ-YRRQGMKMLPECATFDDG 228
+ +P A+ + W D + + G + R+ ++ G
Sbjct: 306 QGASPTGWAEAVAA----AYGRWQADRVVAEVNQGGAMVETVLRQVAPQVPLRKVHATRG 361
Query: 229 SNGVEAGISDMLDRMRSGRW 248
A + GR
Sbjct: 362 K---AARAEPVAALYEQGRV 378
>gi|17987633|ref|NP_540267.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M]
gi|260563648|ref|ZP_05834134.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
1 str. 16M]
gi|260566826|ref|ZP_05837296.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
40]
gi|261219037|ref|ZP_05933318.1| phage DNA Packaging protein [Brucella ceti M13/05/1]
gi|261221792|ref|ZP_05936073.1| phage DNA Packaging protein [Brucella ceti B1/94]
gi|261321463|ref|ZP_05960660.1| phage DNA Packaging protein [Brucella ceti M644/93/1]
gi|261324708|ref|ZP_05963905.1| phage DNA Packaging protein [Brucella neotomae 5K33]
gi|261751918|ref|ZP_05995627.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513]
gi|261754576|ref|ZP_05998285.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686]
gi|265990705|ref|ZP_06103262.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1]
gi|265994537|ref|ZP_06107094.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether]
gi|265997756|ref|ZP_06110313.1| phage DNA Packaging protein [Brucella ceti M490/95/1]
gi|265999560|ref|ZP_05466908.2| ATP/GTP-binding site domain-containing protein A [Brucella
melitensis bv. 2 str. 63/9]
gi|17983344|gb|AAL52531.1| phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M]
gi|260153664|gb|EEW88756.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
1 str. 16M]
gi|260156344|gb|EEW91424.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
40]
gi|260920376|gb|EEX87029.1| phage DNA Packaging protein [Brucella ceti B1/94]
gi|260924126|gb|EEX90694.1| phage DNA Packaging protein [Brucella ceti M13/05/1]
gi|261294153|gb|EEX97649.1| phage DNA Packaging protein [Brucella ceti M644/93/1]
gi|261300688|gb|EEY04185.1| phage DNA Packaging protein [Brucella neotomae 5K33]
gi|261741671|gb|EEY29597.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513]
gi|261744329|gb|EEY32255.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686]
gi|262552224|gb|EEZ08214.1| phage DNA Packaging protein [Brucella ceti M490/95/1]
gi|262765650|gb|EEZ11439.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether]
gi|263001489|gb|EEZ14064.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1]
gi|263094670|gb|EEZ18449.1| ATP/GTP-binding site domain-containing protein A [Brucella
melitensis bv. 2 str. 63/9]
Length = 430
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 306
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 307 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 364
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 365 ---EPVAALYEQGRVR 377
>gi|126015324|gb|ABN70693.1| terminase [Salmonella phage SETP13]
Length = 223
Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 16/102 (15%)
Query: 21 FDEEPPED------VYFEGL----------TRINATQGLVTLTLTPLKGRSPIIEHYLSA 64
DE + + + + I T +G + + +
Sbjct: 122 IDELDTLNKDHAEHAWNKVIARNRQLPRTYRPITPKPANTVSVFTTPEGFRFVHDRWAVK 181
Query: 65 SSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
++I+ P E + + D+YP +A GE
Sbjct: 182 KKPGYEMIQAATTSNPFLPEDYVQSLRDTYPGQLIDAYINGE 223
>gi|48696639|ref|YP_024418.1| terminase [Vibrio phage VP2]
gi|48696683|ref|YP_024977.1| hypothetical protein VP5_gp02 [Vibrio phage VP5]
gi|40806146|gb|AAR92064.1| hypothetical protein [Vibrio phage VP5]
gi|40950037|gb|AAR97628.1| terminase [Vibrio phage VP2]
Length = 568
Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 17/212 (8%), Positives = 45/212 (21%), Gaps = 14/212 (6%)
Query: 15 TVHYVWFDEEPPEDVYFEGLTRINATQ--GLVTLTLTPLKGRSPIIEHYLSASSSDRQVI 72
T + + E D + T V ++ + + + + +
Sbjct: 248 TWRWAYSSEALDTDTLQQAGTATLNDGHVIPVYESIPTELKYRNVADAEKAIERGVVKGM 307
Query: 73 RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG-----SGRIFPIVEEDIVINSL 127
T + + + G + + I
Sbjct: 308 YAVRIMTERMVQSLIDE---GQDPFIVRQEYYCDWDVALQGSYYGDLMITMYNTGRIGKF 364
Query: 128 DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187
+ MD G++ + + + + + + + K
Sbjct: 365 PHNPNRPVYVHMDIGFNDSTSITFTQEGPMGQGVIIDHLWGSNKSLLQWVYDIEEHANKR 424
Query: 188 LP----WAWPHDGLQHDKRSGEQLSAQYRRQG 215
PHD + G+ +G
Sbjct: 425 DYALGLIILPHDADNTEVSHGKTRKEWVLEEG 456
>gi|134295281|ref|YP_001119016.1| hypothetical protein Bcep1808_1170 [Burkholderia vietnamiensis G4]
gi|134138438|gb|ABO54181.1| protein of unknown function DUF264 [Burkholderia vietnamiensis G4]
Length = 458
Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 15/199 (7%), Positives = 36/199 (18%), Gaps = 36/199 (18%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINAT-------------QGLVTLTLTPLKG 53
+K ++F+E + P LTR+ + P
Sbjct: 118 EKILGKEFATLYFNESSQIPMASVDTALTRLAQKVMTNIEGREPAPLKVRALFDCNPPSK 177
Query: 54 RSPIIEHYLSASSS----------DRQVIRMTINETPHYNEQERKRIIDSYPLHEREART 103
+ ++ D ++ + + + ++
Sbjct: 178 AHWTYKRFVLKVDPETGDPLPNPGDYAHFQINPGDNAQNLSADYLDTLKGMSPRLQKRFL 237
Query: 104 KGEPILGS-----GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFA------AGHL 152
+GE + L V A +
Sbjct: 238 RGEFSDATPNQLFAEETIEKWRHGTDQPLPDFVRVVVAVDPSGSGDVDNADNDAIGIIVV 297
Query: 153 VWNRDSDVIYVVKNYRCRE 171
D +
Sbjct: 298 GLGTDGRAYVLDDCTVKAG 316
>gi|284008126|emb|CBA74349.1| DNA packaging protein gp2 [Arsenophonus nasoniae]
Length = 137
Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDV 29
K Y QGR +WQ +TVH VWFDEEPP +
Sbjct: 109 FKPYSQGRARWQGDTVHGVWFDEEPPYAI 137
>gi|62289552|ref|YP_221345.1| terminase large subunit [Brucella abortus bv. 1 str. 9-941]
gi|62195684|gb|AAX73984.1| hypothetical terminase large subunit [Brucella abortus bv. 1 str.
9-941]
Length = 380
Score = 44.4 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 88 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 147
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 148 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELNGELVEERPGALWSRDR 204
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 205 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 255
>gi|148560043|ref|YP_001258583.1| putative terminase large subunit [Brucella ovis ATCC 25840]
gi|148371300|gb|ABQ61279.1| putative terminase large subunit [Brucella ovis ATCC 25840]
Length = 380
Score = 44.0 bits (102), Expect = 0.018, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 88 DADSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 147
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 148 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 204
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 205 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 255
>gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
Length = 422
Score = 44.0 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 24/255 (9%), Positives = 54/255 (21%), Gaps = 23/255 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED---VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
D+ + W DE + + + + T K R+ +
Sbjct: 128 DPDQLRGPQFDAAWADEIAKWRYEAAWDNLMLGLRLGADPRCVATTTPKPRAWLARLM-- 185
Query: 64 ASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGS-GRIFPIVEE 120
+ V R E + +I+ Y GE + G ++
Sbjct: 186 -ADPGTVVTRGATRENAGNLAPGFLDQILARYAGTRLGRQEIDGEFLTEIPGALWTRTLI 244
Query: 121 DIVINSLDIPEHWVQIG-----GMDFGWH-HPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ +I + G + + + +P
Sbjct: 245 EGARALPGAVPGLARIIVAVDPAVTSGSDSDETGIVVAGVDGEGRFWVLEDL--SGRMSP 302
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+ + + G+ + A R + G
Sbjct: 303 DLWA---RRSADAYRRHHADAVVCEVNQGGDLVVATLRTVDGSLPVRAVRATRGKRLRA- 358
Query: 235 GISDMLDRMRSGRWK 249
+ GR +
Sbjct: 359 --EPVAALYEQGRVR 371
>gi|304373761|ref|YP_003858506.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB16]
gi|299829717|gb|ADJ55510.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB16]
Length = 609
Score = 44.0 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 38/129 (29%), Gaps = 9/129 (6%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPP----EDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
A+ D + N ++ DE +D + I++ + L T G +
Sbjct: 234 AFASSPDAVRGNAFAMIYIDECAFIPNFQDAWLAIQPVISSGRKSKILITTTPNGLNHFY 293
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A + T T ++R+ + + +G
Sbjct: 294 DIWNAAVEGKSGFVPYTAIWT-----SVKERLYTDGDDGVFDDGYSWSAKMIAGSSKEAF 348
Query: 119 EEDIVINSL 127
++ +
Sbjct: 349 LQEHCAEFM 357
>gi|261315193|ref|ZP_05954390.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10]
gi|261304219|gb|EEY07716.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10]
Length = 329
Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 123 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 182
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 183 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 239
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 240 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 290
>gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 460
Score = 43.6 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 27/266 (10%), Positives = 59/266 (22%), Gaps = 37/266 (13%)
Query: 8 RDKWQSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY 61
D + WFDE + ++VY + + + T K + +
Sbjct: 148 PDNLRGFAFDKAWFDEFAAWNKQTAQEVYDMMWYDLRESPSPQMVISTTPKPLKHVRDL- 206
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
S + R + ++ R R + L + +
Sbjct: 207 --VSKPGVVITRGHTKDNLPNLSAIALEKLERDYGKTRLGRQELAGELIESIEGALWDVT 264
Query: 122 IVINSLDIPEHWVQIGGMDFGWH---------HPFAAGHLVWNRDS--------DVIYVV 164
+ + + P+ + + G A D+ + Y++
Sbjct: 265 MFQDPVFRPDTMPPLEDIVVGVDPAVRSSEGADMTAFTVAARAEDAPGMFPDHLNHGYIL 324
Query: 165 KNYRCREQTPIFHVAA--LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPEC 222
+ + A L ++ Q G+
Sbjct: 325 EAIQGHYTPRDAMAKAGELARKYGASRVVL----EANNGGEYLPTVLQMVAPGVPWKIVH 380
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRW 248
A D + GR
Sbjct: 381 AQQDKRGRA-----MPVATLYEQGRI 401
>gi|297247965|ref|ZP_06931683.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196]
gi|297175134|gb|EFH34481.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196]
Length = 415
Score = 43.6 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 123 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 182
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 183 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 239
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 240 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 290
>gi|254707699|ref|ZP_05169527.1| Phage DNA packaging protein [Brucella pinnipedialis M163/99/10]
Length = 321
Score = 43.6 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 282
>gi|167647878|ref|YP_001685541.1| hypothetical protein Caul_3918 [Caulobacter sp. K31]
gi|167350308|gb|ABZ73043.1| protein of unknown function DUF264 [Caulobacter sp. K31]
Length = 439
Score = 43.6 bits (101), Expect = 0.024, Method: Composition-based stats.
Identities = 35/249 (14%), Positives = 56/249 (22%), Gaps = 17/249 (6%)
Query: 7 GRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
D + H W DE P + + T + +T TP PI
Sbjct: 150 DPDALRGPQFHAAWADEFCAWPKPAETLAMLRFGLRLGTDPRLVVTTTP----RPIRALR 205
Query: 62 LSASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVE 119
+ R + H + Y G + G G +F +
Sbjct: 206 NLIAEPGAVQTRAPTSANADHLAPAFLSTLRGLYGGTRLAAQELDGLIVEGEGGLFRAED 265
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
+ V + A G +V R D +V+ + + +P
Sbjct: 266 LARCRGAPPAAFDRVVVAIDPPATATGDACGIVVCGRFGDRAFVLADRTAKGLSPNGWAR 325
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDM 239
+ AQ P S G A +
Sbjct: 326 RAVDAAVRFDADALVAEANQGGDMVRSVLAQAAP------PCPVKLVKASVGKRARAEPV 379
Query: 240 LDRMRSGRW 248
GR
Sbjct: 380 AALYEQGRV 388
>gi|225158780|ref|ZP_03725097.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
gi|224802615|gb|EEG20870.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
Length = 519
Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 10/151 (6%)
Query: 99 REARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS 158
+A +G G + + + I + D G
Sbjct: 295 FKAPIEG---AIYGDVIAKIRANGQIYPFQWDRTFPVYTSWDIGHSDTTDIWWF--QLRG 349
Query: 159 DVIYVVKNYRCREQTPIFHVAALKSWG-KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK 217
+ + +K+ + ++S G PHD +G + ++ G++
Sbjct: 350 NRMDWIKHVTLERSSAAQAANVIRSAGIPVAYHYLPHDAEAGHANTGTSYITELKKAGLQ 409
Query: 218 MLPECATFDDGSNGVEAGISDMLDRMRSGRW 248
L ++ + GI+ + D + ++
Sbjct: 410 NLR----VVRRTHDIWIGINQLRDLLMRSQF 436
>gi|237815048|ref|ZP_04594046.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254697001|ref|ZP_05158829.1| Phage DNA packaging protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254729902|ref|ZP_05188480.1| Phage DNA packaging protein [Brucella abortus bv. 4 str. 292]
gi|256257118|ref|ZP_05462654.1| Phage DNA packaging protein [Brucella abortus bv. 9 str. C68]
gi|237789885|gb|EEP64095.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
Length = 407
Score = 43.6 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 282
>gi|254693351|ref|ZP_05155179.1| Phage DNA packaging protein [Brucella abortus bv. 3 str. Tulya]
Length = 407
Score = 43.6 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 282
>gi|319783526|ref|YP_004143002.1| hypothetical protein Mesci_3835 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169414|gb|ADV12952.1| hypothetical protein Mesci_3835 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 474
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/238 (9%), Positives = 51/238 (21%), Gaps = 31/238 (13%)
Query: 34 LTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS---------DRQVIRMTINETPHYNE 84
L+ I A G +T +G + + + + ++ T +E
Sbjct: 149 LSPILAENGGWASFITTPRGNNHAKGMLDATKRNAFDPLTNPRGWFTEVLGVDATQAISE 208
Query: 85 QERKRIIDSYPLHERE--------ARTKGEPILG------SGRIFPIVEEDIVINSLDIP 130
+ + Y + + + + + +
Sbjct: 209 ADIEEQRVIYTGLFGKEIADLLIDQEFYCSFAGALVGSYWGAEVAKAERDGRIGRPIAVN 268
Query: 131 EHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPW 190
+ D G +V Y + L G
Sbjct: 269 PAYPVHTVWDLGKAANNPIWCFQV--IDGTPIIVDFYLPDSEDLADWCKWLDDQGYKGND 326
Query: 191 AWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRW 248
PHD L + + G G G++ ++ R+
Sbjct: 327 YVPHDILHPQWGTARTRLQTLKDHG------RKPKMVGIASFADGVNAGRQTIKLARF 378
>gi|260545691|ref|ZP_05821432.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260757573|ref|ZP_05869921.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292]
gi|260761398|ref|ZP_05873741.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260883379|ref|ZP_05894993.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68]
gi|260097098|gb|EEW80973.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260667891|gb|EEX54831.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292]
gi|260671830|gb|EEX58651.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260872907|gb|EEX79976.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68]
Length = 426
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 301
>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
Length = 330
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/241 (9%), Positives = 67/241 (27%), Gaps = 37/241 (15%)
Query: 21 FDE--EPPEDVYFEGLTR-INATQGLVTLTLTPLKGR--SPIIEHYLSASSSD---RQVI 72
DE + +V+ E + + +G TP + + + ++A + +
Sbjct: 1 MDEVAQMKPEVWGEVVQPALADRRGSAVFIGTPKGANLFAELYQRGMAAQAQGDAAWCAL 60
Query: 73 RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
+ T ++ +R+ + + S I + + + + +
Sbjct: 61 SYPVTSTDVLPAEDVERLRRELSDNAFRQEMLCDFTASSDDILIPLPDVLEAEARQLAWD 120
Query: 133 WVQIGGMDFGWH-----HPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187
V + G + D V++ + A +++
Sbjct: 121 DVGGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQLADRVAAAIMENRPHA 180
Query: 188 LPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGR 247
+ D G+ + + R+ G +++ ++ GR
Sbjct: 181 VFI---------DAGQGQGVIDRLRQLGHEVIEVPFGGKP---------------LQEGR 216
Query: 248 W 248
+
Sbjct: 217 F 217
>gi|260168345|ref|ZP_05755156.1| Phage DNA packaging protein [Brucella sp. F5/99]
Length = 411
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 54/256 (21%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R + GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQKLDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 287
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 288 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 345
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 346 ---EPVAALYEQGRVR 358
>gi|83950455|ref|ZP_00959188.1| Putative large terminase [Roseovarius nubinhibens ISM]
gi|83838354|gb|EAP77650.1| Putative large terminase [Roseovarius nubinhibens ISM]
Length = 434
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 31/260 (11%), Positives = 63/260 (24%), Gaps = 30/260 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE------DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
+ + W DE + R+ + +T TP +
Sbjct: 131 DPEALRGPQFDGAWLDEMAKWKKARATWDMLQFALRLGDDP-QICVTTTP----RNVGVL 185
Query: 61 YLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG-EPILGSGRIFPI 117
++ V + H E + Y G G ++ +
Sbjct: 186 KDVLAAPSTVVTQAPTEANRAHLAESFLAEVRARYVGTRLGRQELDGILLEEAEGALWSL 245
Query: 118 VEEDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRC 169
D S + + ++ YV+ +
Sbjct: 246 AALDAARVSKLPELSRIVVAVDPPVTGHAGSDECGIIVAGVDQSGPVQEWRAYVLADRSV 305
Query: 170 REQTPIFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+P AA+++ + + D + + G L RQ ++P
Sbjct: 306 SGMSPTGWAGAAIRAMEE-----FGADKMVAEVNQGGDLVETVLRQIDPLIP--FRGVHA 358
Query: 229 SNGVEAGISDMLDRMRSGRW 248
S G +A + GR
Sbjct: 359 SRGKQARAEPVAALYEQGRV 378
>gi|300022629|ref|YP_003755240.1| hypothetical protein Hden_1105 [Hyphomicrobium denitrificans ATCC
51888]
gi|299524450|gb|ADJ22919.1| protein of unknown function DUF264 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 500
Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/251 (9%), Positives = 49/251 (19%), Gaps = 19/251 (7%)
Query: 8 RDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + W DE + + T + + +
Sbjct: 206 AEALRGPQFTAAWCDELAKWRNAEKAWDMLQFALRLGDAPRACVTTTPRATKLLKS--II 263
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRI-IDSYPLHEREARTKGEP--ILGSGRIFPIVEE 120
A + V T + + + GE G E
Sbjct: 264 ADEATVTVNLATADNALNLAPTFLAEMTRRYAGSAIGRQELLGEIVEDASDGLWRRHWIE 323
Query: 121 DIVINSLDIPEHWVQIGGM---DFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ +++ + V D + + +TP
Sbjct: 324 EARVDAAPEMQRVVVAVDPPVTATAASDACGIVVAGLGVDKRAYVLADR-TVQGRTPEIW 382
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
A S + + Q+R+ ++ AT
Sbjct: 383 ARAALSAFDDYEADRMVAEVNQGGDLVVSVLQQFRQN-FPVVKVRATRGKWVRA-----E 436
Query: 238 DMLDRMRSGRW 248
+ GR
Sbjct: 437 PVAALYAEGRV 447
>gi|306845199|ref|ZP_07477775.1| Phage DNA packaging protein [Brucella sp. BO1]
gi|306274358|gb|EFM56165.1| Phage DNA packaging protein [Brucella sp. BO1]
Length = 430
Score = 43.2 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 54/256 (21%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W+DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWYDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 306
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 307 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 364
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 365 ---EPVAALYEQGRVR 377
>gi|261213600|ref|ZP_05927881.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya]
gi|260915207|gb|EEX82068.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya]
Length = 426
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 301
>gi|254688870|ref|ZP_05152124.1| Phage DNA packaging protein [Brucella abortus bv. 6 str. 870]
Length = 407
Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 115 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 174
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 175 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 231
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 232 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 282
>gi|261757806|ref|ZP_06001515.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
gi|261737790|gb|EEY25786.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
Length = 430
Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 54/256 (21%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R + GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQKLDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ P + + + + + T
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE----SMTMA 306
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQG--MKMLPECATFDDGSNGVE 233
+ + + GE ++A + + +L A+
Sbjct: 307 KPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKWLRA-- 364
Query: 234 AGISDMLDRMRSGRWK 249
+ GR +
Sbjct: 365 ---EPVAALYEQGRVR 377
>gi|254418881|ref|ZP_05032605.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
gi|196185058|gb|EDX80034.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
Length = 356
Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 67/249 (26%), Gaps = 13/249 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + H W DE PE V + T + + L
Sbjct: 83 DPDSLRGPQFHAAWADEFCVWRKPEAVLSNLRFGLRLGAAPRLAVTTTPRPIPAL--RRL 140
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEED 121
A + R T + + + D Y +G+ + G G +F + +
Sbjct: 141 MAEAGTRVDRAATALNAKNLSPGFLAHLSDVYGGTRLAAQELEGQVVEGEGALFGVEDLK 200
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
S V + H A G +V R +++ + R +P AA+
Sbjct: 201 RARGSRPAELDRVIVAVDPPASAHGDACGIVVAGRKDRRAFILADRTVRGLSPGGWAAAV 260
Query: 182 KSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLD 241
+ + + GE + R+ P S A +
Sbjct: 261 CRAARDFD---AQEVAAEANQGGEMVRNVLRQADC---PAPVELLHASRSKAARAEPVAL 314
Query: 242 RMRSGRWKV 250
GR V
Sbjct: 315 PREGGRVSV 323
>gi|228904911|ref|ZP_04068965.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL
4222]
gi|228854925|gb|EEM99529.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL
4222]
Length = 954
Score = 43.2 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 24/266 (9%), Positives = 56/266 (21%), Gaps = 50/266 (18%)
Query: 10 KWQSNTVHYVWFDEEP-----PEDVYFEGLTRINATQGLVTLTLTPLKGR---------- 54
+ +++ DE + F + G + + +
Sbjct: 530 SLRGQRADWLYMDEVDYMGDKDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMK 589
Query: 55 ---------SPIIEH--YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART 103
+ + + Y S P + + + + + E
Sbjct: 590 LNQDVKMNKNNVYDMRSYNRTLSEGWAEFYFPTMVNPEWGPKMERELRKLFSEAAYEHEV 649
Query: 104 KGEPILGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS-- 158
E +F D + + + W AA +V + +
Sbjct: 650 LAEFGTEMVGVFNKDYVDEASSIGYNYTTSPTHDGPIAIGIDWDKAGAATQIVVTQYNPF 709
Query: 159 ----------------DVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR 202
++ + F L + G+ D
Sbjct: 710 EVRRPRPELGETEPSFGRFQIINRIEIPK--GEFTYDIAVKKIIELDGVYNPFGIYADAG 767
Query: 203 SGEQLSAQYRR-QGMKMLPECATFDD 227
+GE R+ G K+
Sbjct: 768 AGEYQIELLRKTLGDKVKRVHLGSSQ 793
>gi|260754354|ref|ZP_05866702.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870]
gi|260674462|gb|EEX61283.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870]
Length = 426
Score = 43.2 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 34/171 (19%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE P++ + + + T + +
Sbjct: 134 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRAVPLLKALLT 193
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ S M E + + I R GE G ++
Sbjct: 194 DRTVSMT---HMRTAENAGNLAEGFMQTIARRYAGTRLGRQELDGELVEERPGALWSRDR 250
Query: 120 EDIVINSLDIPEHWVQIG----GMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
+ P + + + + +
Sbjct: 251 IEQCFEENPPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADE 301
>gi|75758280|ref|ZP_00738405.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74494334|gb|EAO57425.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 660
Score = 43.2 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 24/266 (9%), Positives = 56/266 (21%), Gaps = 50/266 (18%)
Query: 10 KWQSNTVHYVWFDEEP-----PEDVYFEGLTRINATQGLVTLTLTPLKGR---------- 54
+ +++ DE + F + G + + +
Sbjct: 236 SLRGQRADWLYMDEVDYMGDKDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMK 295
Query: 55 ---------SPIIEH--YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREART 103
+ + + Y S P + + + + + E
Sbjct: 296 LNQDVKMNKNNVYDMRSYNRTLSEGWAEFYFPTMVNPEWGPKMERELRKLFSEAAYEHEV 355
Query: 104 KGEPILGSGRIFPIVEEDI---VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS-- 158
E +F D + + + W AA +V + +
Sbjct: 356 LAEFGTEMVGVFNKDYVDEASSIGYNYTTSPTHDGPIAIGIDWDKAGAATQIVVTQYNPF 415
Query: 159 ----------------DVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR 202
++ + F L + G+ D
Sbjct: 416 EVRRPRPELGETEPSFGRFQIINRIEIPK--GEFTYDIAVKKIIELDGVYNPFGIYADAG 473
Query: 203 SGEQLSAQYRR-QGMKMLPECATFDD 227
+GE R+ G K+
Sbjct: 474 AGEYQIELLRKTLGDKVKRVHLGSSQ 499
>gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
Length = 550
Score = 43.2 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 14/188 (7%), Positives = 53/188 (28%), Gaps = 11/188 (5%)
Query: 12 QSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSAS 65
+ + + ++ DE + + I++ + + ++ G + + + A
Sbjct: 166 RGMSFNVIFLDEFAFVPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDAE 225
Query: 66 SSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
+ I + P + + + I + + + + E + + + +
Sbjct: 226 RGKNEYIPTEVHWSAVPGRDAAWKDQTIANTSEQQFKVEFECEFLGSVDTLISPSKLRTM 285
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKS 183
I ++ H + + + V + + T + + K
Sbjct: 286 PYEDPIIQNRGLAVYKQVEKDHNY---IVTVDVARGVSQDYSAFCIIDTTTVPYELVAKY 342
Query: 184 WGKWLPWA 191
+
Sbjct: 343 RNNDIKPI 350
>gi|209550015|ref|YP_002281932.1| phage uncharacterized protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209535771|gb|ACI55706.1| phage uncharacterized protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 462
Score = 43.2 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 71/284 (25%), Gaps = 60/284 (21%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRINATQG---LVTLTLTPLKGRS--- 55
+E+ WQ + + + FDE ++ L+R + G V T P
Sbjct: 115 HEKTIYNWQGSQIPLICFDELTHFSAKQFWYMLSRNRSMCGVRPYVRATCNPDADSWVAE 174
Query: 56 ---PIIEHYLSASSSDRQ----------------------------------------VI 72
I + +R I
Sbjct: 175 FIAWWINQETGFAIPERAGVLRWFIRIGDTIIWGDSPEELSHHVNPLTGDPIPPKSVTFI 234
Query: 73 RMTINETPHYNEQE--RKRIIDSYPLHEREARTKGEPIL--GSGRIFPIVEEDIVINSL- 127
+++ + + + P ERE G + +G +F ++V
Sbjct: 235 PAKLSDNVMLMAADPGYLANLMAQPTVERERLLGGNWKIRPAAGLLFQRGWCEVVDAVPA 294
Query: 128 --DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
W P A + D Y+V ++ +P +K+
Sbjct: 295 GVRWMRGWDLASTPKTEGTDPDATAGTKIGKLPDGRYIVGHHVSDFLSPAGVERLIKNTA 354
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQ--GMKMLPECATFDD 227
+ Q ++G+ + G + + D
Sbjct: 355 EADGRETQISLPQDPGQAGKSQVTNLTKMLSGFNVRATPESGDK 398
>gi|21280309|dbj|BAB96804.1| gp17v [Bacteriophage KVP20]
Length = 600
Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 17/151 (11%)
Query: 3 AYEQGRDKWQSNTVHYVWFDE---EPPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPI 57
AY G D + + ++ DE P D +++ + + V LT TP G +
Sbjct: 222 AYASGSDAVRGKSFSMIYVDECAFVPGFDDFWKATFPVISSGEESKVVLTSTPN-GLNHY 280
Query: 58 IEHYLSASSSDRQVIRMT----------INETPHYN-EQERKRIIDSYPLHEREARTKGE 106
+ + +A + T + + E + I +
Sbjct: 281 HDMWNAAVAGVSTFEPYTTTWRAVQNRLYKDGEFDDGEAFKSETIGNTSREAFSQEHLCN 340
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIG 137
+ +G + + + + +H
Sbjct: 341 FLGTAGTLINGFKLSKMKGQDIVKDHDGWYV 371
>gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
Length = 452
Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 25/258 (9%), Positives = 54/258 (20%), Gaps = 26/258 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + + V +T TP +
Sbjct: 149 DPEGLRGPQFDAAWVDELAKWKKAEETWDQLQFALRLGEDPRVCVTTTP----RNVDVLK 204
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVE 119
+S + + R G + + E
Sbjct: 205 KLLASPSTVTTHAPTEANAANLAGSFLEEVRARYRGTRLGRQELDGVLLADAEGALWTSE 264
Query: 120 EDIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWN----RDSDVIYVVKNYRCR 170
+P + G+D + + V+ + +
Sbjct: 265 MLERGRIEKLPTFDRIVVGVDPATTAGAGSDECGIVVVGAQTQGAPQNWRAVVLADCTAQ 324
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
TP A S + + + G + R+ + + G
Sbjct: 325 GATPSGWARAAVSAMEQYG---ADRLVVETNQGGLMVGEVLRQIDPLVPLKSVHASRGK- 380
Query: 231 GVEAGISDMLDRMRSGRW 248
A + GR
Sbjct: 381 --VARAEPVAALYEQGRV 396
>gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17]
gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17]
Length = 436
Score = 42.8 bits (99), Expect = 0.040, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 46/183 (25%), Gaps = 15/183 (8%)
Query: 8 RDKWQSNTVHYVWFDE------EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY 61
+ + H W DE E D L V +T TP
Sbjct: 144 PEALRGPQHHAAWCDELGKWKGEAGWDNLMMTLR--LGEHPRVLVTTTPRATP----LMR 197
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILG-SGRIFPIVE 119
+ D ++ H + + ++ Y GE + G ++
Sbjct: 198 KVMALPDCVETIGRTSDNAHLPDSFQDAMLSQYGDTRLGRQELDGEMVDDREGALWTRAL 257
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN-RDSDVIYVVKNYRCREQTPIFHV 178
D V +G A G + YV+++ +P
Sbjct: 258 LDRQRVKTVPALDRVVVGVDPPATSSGDACGIVAVGLGRDGHGYVLEDASEAGLSPEGWA 317
Query: 179 AAL 181
A +
Sbjct: 318 ARV 320
>gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
Length = 408
Score = 42.8 bits (99), Expect = 0.041, Method: Composition-based stats.
Identities = 29/260 (11%), Positives = 60/260 (23%), Gaps = 30/260 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + + V +T TP +
Sbjct: 105 DPEGLRGPQFDAAWVDELAKWKKAEETWDQLQFALRLGEDPRVCVTTTP----RNVGVLK 160
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVE 119
+S + + R G + + E
Sbjct: 161 NLLASPSTVTTHAPTEANAANLAGSFLEEVRARYRGTRLGRQELDGVLLADAEGALWTSE 220
Query: 120 EDIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWNRDSD----VIYVVKNYRCR 170
D+P + G+D + V+ + +
Sbjct: 221 RIEAGRVRDVPLLDRIVVGLDPATTAGAGSDECGIVVVGAQTQGPPQDWRAVVMADCTVQ 280
Query: 171 EQTPIFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQYRRQGMKMLPECATFDDG 228
TP AA+ + + + D L + G Q ++ R+ + + G
Sbjct: 281 GATPSGWARAAISAMEQ-----YGADRLVAEVNQGGQMVAEVLRQVDPLVPVKSVHASRG 335
Query: 229 SNGVEAGISDMLDRMRSGRW 248
A + GR
Sbjct: 336 K---VARAEPVAALYEQGRV 352
>gi|219681305|ref|YP_002456069.1| putative terminase [Erwinia phage phiEa21-4]
gi|199580572|gb|ACH88959.1| putative terminase [Erwinia phage phiEa21-4]
Length = 534
Score = 42.8 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 32/261 (12%), Positives = 67/261 (25%), Gaps = 22/261 (8%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPED----VYFEGLTRI-NATQGLVTLTLTPLKGRS 55
E+ + Q +++DE Y R + ++ P
Sbjct: 166 YMELEKHAEAHQGIEYSAIYWDEFTHFSQSQVDYLMTRMRSGADGDSYMKCSMNPE-RDH 224
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQER-KRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + L +
Sbjct: 225 FVYSWVEPFLDEEG------YPDNEKCGRTRWFVIQEGVMYSDWERDEILKQFPLEIPQT 278
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL--VWNRDSDVIYVVKNYRCREQ 172
+ V I N + G ++ A R Y + + +
Sbjct: 279 YTFVSGTIDDNPILDFIEPKYRGRLENNTPINVARLRYGNWKARAEGSSYFDRRWCEIVE 338
Query: 173 TPIFHVAALKSWG--KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ +++W LP D D +G +++ ++ G + F D
Sbjct: 339 SVDEPATRVRAWDLAATLPSELNPDP---DWTAGVKMAKG-QKTGTFYVEHVKRFRDRPA 394
Query: 231 GVEAGISDMLDRMRSGRWKVF 251
GVE GI D R + + ++F
Sbjct: 395 GVEEGILDTA-RFDTAKVEIF 414
>gi|262067933|ref|ZP_06027545.1| putative protein splicing site [Fusobacterium periodonticum ATCC
33693]
gi|291378336|gb|EFE85854.1| putative protein splicing site [Fusobacterium periodonticum ATCC
33693]
Length = 832
Score = 42.8 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 36/132 (27%), Gaps = 7/132 (5%)
Query: 7 GRDKWQSNTVHYVWFDEEP--PEDVYFEGLT-RINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + V+ DE E Y + +++ + + TP +
Sbjct: 423 DGSSIRGQSADRVYIDEAAYVTEQAYQVLMAFKLDNPNVVFVVFSTPTALETNF--RKWC 480
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIV 123
+ + P++ E + + +S + + E G E+I
Sbjct: 481 LVDPAWREFHYPSSILPNFEENDGPELRNSLTEEGYKLEVEAEFS--EGDSKVFKTENIK 538
Query: 124 INSLDIPEHWVQ 135
+ +
Sbjct: 539 NSLYQYKYCEFR 550
>gi|84517307|ref|ZP_01004661.1| putative large terminase [Loktanella vestfoldensis SKA53]
gi|84508787|gb|EAQ05250.1| putative large terminase [Loktanella vestfoldensis SKA53]
Length = 426
Score = 42.5 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 27/261 (10%), Positives = 59/261 (22%), Gaps = 26/261 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
Q + + W DE + + T + ++ + +
Sbjct: 121 AQDPEALRGPQFDAAWVDELAKWRKAAATWDMLQFGLRLGDAPRVCVTTTPRRQALLRKL 180
Query: 61 YLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIV 118
V + + + + Y +G + +
Sbjct: 181 ---LDRPSTVVTHAPTSANRANLADSFLAEMTAEYAGTALGRQELEGVMLDDVDGALWQM 237
Query: 119 EEDIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWNRDSD----VIYVVKNYRC 169
P + +D YV+++
Sbjct: 238 GALAACQVDRAPPLTRIVVAIDPPTTAHAGSDACGIIVAGVVMAGPVQDWRAYVLEDASL 297
Query: 170 REQTPIFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
+ +P AA+ + + D L + G + A RQ ++P
Sbjct: 298 QGASPDTWARAAIGAMARH-----NADRLVAEVNQGGDMVAAVIRQIDPLVP--LRAVHA 350
Query: 229 SNGVEAGISDMLDRMRSGRWK 249
S G A + GR +
Sbjct: 351 SRGKIARAEPVAALYEQGRVR 371
>gi|331035425|gb|AEC52982.1| large terminase protein [Synechococcus phage S-CRM01]
Length = 567
Score = 42.5 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 12 QSNTVHYVWFDEEPPE-----DVYFEGLTRI--NATQGLVTLTLTPLKGRSPIIEHYLSA 64
+ + V DE D +F + + V + TP G + + + A
Sbjct: 164 RGFAYNIVMLDEFAFVPTNVADDFFSSVYPTISSGKSTKVIIVSTPC-GMNHFYKMWTDA 222
Query: 65 SSSDRQV--IRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ I +E P +E+ ++ I + L + + + + I G
Sbjct: 223 TKGRNSYNPIEAHWSEVPGRDEKFKQETIANTSLSQWQQEFETDFIGSVG 272
>gi|86741138|ref|YP_481538.1| hypothetical protein Francci3_2442 [Frankia sp. CcI3]
gi|86568000|gb|ABD11809.1| hypothetical protein Francci3_2442 [Frankia sp. CcI3]
Length = 160
Score = 42.5 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 6 QGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
+ + + T V +DE PE ++ + L R++ + + P + +
Sbjct: 98 RSEGRIRGLTAKTVLYDEITLSPEPMFQQTLARLSLPYSRLIGSTNPDSPAHWLRKK 154
>gi|302382339|ref|YP_003818162.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC
15264]
gi|302192967|gb|ADL00539.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC
15264]
Length = 447
Score = 42.5 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 32/253 (12%), Positives = 58/253 (22%), Gaps = 18/253 (7%)
Query: 7 GRDKWQSNTVHYVWFDEE----PPEDVYFEGLTRINA-TQGLVTLTLTPLKGRSPIIEHY 61
D + H W DE PE V + + +T TP PI
Sbjct: 151 DPDSLRGPQFHAAWADEFCAWRAPERVLSNLRFGLRRGPDPQLVVTTTP----RPIAALR 206
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
+ + R + + R + E ++ G ED
Sbjct: 207 TLLAEPGTRTTRGATRDNAANLPPIYLDHLRDLYAGTRLEAQEMEGLVVEGEGALFRAED 266
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
I + PE +I + + + L
Sbjct: 267 IAAARGERPERLEKIIVAVDPPVTATGDACGIVAAGRSRLRGNADVAIACVLADRSARGL 326
Query: 182 KSWGKWLPWAWPHDGLQHDK------RSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
G ++ D+ + GE + ++ G + + G
Sbjct: 327 TPLGWARRVVETARLVEADQIVAEANQGGEMVRTVLQQAGCETRIKLVHATRGKRARA-- 384
Query: 236 ISDMLDRMRSGRW 248
+ GR
Sbjct: 385 -EPVAALYEQGRV 396
>gi|238801895|ref|YP_002925098.1| putative terminase large subunit [Streptococcus phage 5093]
gi|238558581|gb|ACR45911.1| putative terminase large subunit [Streptococcus phage 5093]
Length = 443
Score = 42.5 bits (98), Expect = 0.053, Method: Composition-based stats.
Identities = 29/266 (10%), Positives = 63/266 (23%), Gaps = 41/266 (15%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQGLVTLTL-------TPLKGRSPIIEHYLSAS 65
VW++E + + + R P + E +
Sbjct: 139 VWYEEAAEFTSAEDFDQSNVTFMRQKHENAQFVQFFWSYNPPRNPYSWINEWFEEIKTND 198
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ +E +Q + I R
Sbjct: 199 NYLTHSSTYLDDELGFVTDQMLEDIERIKQNDYDYYRYLYLGEAVGLGNQVYNMSTFH-- 256
Query: 126 SLDIPEHWVQIGGMDFGWH-----HPFAAGHLVWNRDSDVIYVVKNYRC-----REQTPI 175
++D ++ G+ F A +VI + Y ++ P
Sbjct: 257 AIDSLPTDDRLIGISFAMDTGHQQSATACCAYGLTAKGNVILLDTFYYSPAGQVVKKAPS 316
Query: 176 FHVAALKSWGKWL--PWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
+ ++ + + P + D G + ++ G + P N
Sbjct: 317 ELTVMVSNFIDKVLNKYRVPKLRMTIDSAEGALRNQYFKDFGERWHP----VAKKKNQTM 372
Query: 234 AGISDMLDRMRSGRW--------KVF 251
I + + GR+ K+F
Sbjct: 373 --IDMVTSLLAEGRFYYLDIPANKIF 396
>gi|310722310|ref|YP_003969134.1| terminase subunit [Aeromonas phage phiAS4]
gi|306021153|gb|ADM79688.1| terminase subunit [Aeromonas phage phiAS4]
Length = 612
Score = 42.5 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 35/132 (26%), Gaps = 11/132 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
A+ D + N+ ++ DE D + I++ + L T G +
Sbjct: 226 AFSSSPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSGRHSKILMTTTPNGLNHWY 285
Query: 59 EHYLSASSSDRQ-------VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS 111
+ + +A + + + T + + +
Sbjct: 286 DIWTAAITPNSDGSGSKSGFVPYTATWSSVKERMYSDGSKTDGSDSYFDDGYSWSAKTIA 345
Query: 112 GRIFPIVEEDIV 123
G +++
Sbjct: 346 GSSLEAFQQEHN 357
>gi|51038648|ref|YP_063293.1| hypothetical protein BGA24 [Borrelia garinii PBi]
gi|51036321|gb|AAT93783.1| hypothetical protein BGA24 [Borrelia garinii PBi]
Length = 187
Score = 42.5 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 10 KWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
K + ++ +E ++ FE R+ + ++ P Y+
Sbjct: 107 KIRGGNSAIIYVNEATVIHKETLFEVTKRLRKGKTIIIFDTNPESPAHYFKTDYIENK-D 165
Query: 68 DRQVIRMTINETPHYNEQERK 88
+ T + + +
Sbjct: 166 VFKTYNFTTYDNLLNSADFIE 186
>gi|260433350|ref|ZP_05787321.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417178|gb|EEX10437.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 427
Score = 42.1 bits (97), Expect = 0.064, Method: Composition-based stats.
Identities = 36/262 (13%), Positives = 72/262 (27%), Gaps = 30/262 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + + V +T TP +
Sbjct: 124 DPEGLRGPQFDAAWVDELAKWKKAGETWDMLQFALRLGERPRVCVTTTP----RNVKVLK 179
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPIL-GSGRIFPIV 118
++ + + + + + R G + G ++
Sbjct: 180 DLLAAPSTVMTHAPTEANRANLAESFLQEVRARYAGTRLGRQELDGVLLADAEGALWTGS 239
Query: 119 EED--IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN------RDSDVIYVVKNYRCR 170
D V ++ V + G A G +V + YV+ + +
Sbjct: 240 MLDGARVGAVPELDRVVVALDPAVTGGSGADACGIVVVGAQLQGPPEDWRAYVLADRTVQ 299
Query: 171 EQTPIFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
P AA+ + + + + L + G QL + RQ ++P S
Sbjct: 300 GVGPAGWARAAIDAMDE-----FGAERLVAEVNQGGQLVEEVVRQVDPLVP--FRAVRAS 352
Query: 230 NGVEAGISDMLDRMRSGRWKVF 251
G A + GR VF
Sbjct: 353 RGKVARAEPVAALYEQGR--VF 372
>gi|66391955|ref|YP_238880.1| gp17 [Aeromonas phage 31]
gi|62114792|gb|AAX63640.1| gp17 [Aeromonas phage 31]
Length = 613
Score = 42.1 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 13/133 (9%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEE---PPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPI 57
A+ D + N+ ++ DE P + + + + + +T TP G +
Sbjct: 227 AFSSSPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSKILMTTTPN-GLNHW 285
Query: 58 IEHYLSASSSDRQ-------VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ + +A + + + T + S +
Sbjct: 286 YDIWTAAITPNSSGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTI 345
Query: 111 SGRIFPIVEEDIV 123
+G +++
Sbjct: 346 AGSALDAFQQEHN 358
>gi|37651634|ref|NP_932508.1| gp17 [Aeromonas phage 44RR2.8t]
gi|34732934|gb|AAQ81472.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
44RR2.8t]
Length = 613
Score = 42.1 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 13/133 (9%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEE---PPEDVYFEGLTR--INATQGLVTLTLTPLKGRSPI 57
A+ D + N+ ++ DE P + + + + + +T TP G +
Sbjct: 227 AFSSSPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSKILMTTTPN-GLNHW 285
Query: 58 IEHYLSASSSDRQ-------VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILG 110
+ + +A + + + T + S +
Sbjct: 286 YDIWTAAITPNSSGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTI 345
Query: 111 SGRIFPIVEEDIV 123
+G +++
Sbjct: 346 AGSALDAFQQEHN 358
>gi|149008061|ref|ZP_01831609.1| putative terminase large subunit from Bacteriophage A118
[Streptococcus pneumoniae SP18-BS74]
gi|169833859|ref|YP_001693523.1| PBSX family phage terminase large subunit [Streptococcus pneumoniae
Hungary19A-6]
gi|221232295|ref|YP_002511448.1| putative phage terminase large subunit [Streptococcus pneumoniae
ATCC 700669]
gi|73747047|gb|AAZ82443.1| putative terminase large subunit [Streptococcus phage MM1 1998]
gi|147760469|gb|EDK67446.1| putative terminase large subunit from Bacteriophage A118
[Streptococcus pneumoniae SP18-BS74]
gi|168996361|gb|ACA36973.1| phage terminase, large subunit, pbsx family [Streptococcus
pneumoniae Hungary19A-6]
gi|220674756|emb|CAR69329.1| putative phage terminase large subunit [Streptococcus pneumoniae
ATCC 700669]
Length = 436
Score = 42.1 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 28/267 (10%), Positives = 65/267 (24%), Gaps = 43/267 (16%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQGLVTLTL-------TPLKGRSPIIEHYLSAS 65
VW++E + + + R + P + E +
Sbjct: 129 VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNK 188
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ +E EQ + I R + +
Sbjct: 189 NYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMS--MFH 246
Query: 126 SLDIPEHWVQIGGMDFGWHH-----PFAAGHLVWNRDSDVIYVVKNYRCR------EQTP 174
++D ++ G+ F A + ++ + ++ P
Sbjct: 247 AIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKG-KVILLDTWYYSPAGQVVKKAP 305
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQH--DKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ ++ + + + LQ+ D G + + G+K P
Sbjct: 306 SQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTM--- 362
Query: 233 EAGISDMLDRMRSGRW--------KVF 251
I + GR+ K+F
Sbjct: 363 ---IDSFQSLLAQGRFYYLNTENNKIF 386
>gi|320535714|ref|ZP_08035802.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421]
gi|320147420|gb|EFW38948.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421]
Length = 487
Score = 42.1 bits (97), Expect = 0.070, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 4 YEQGRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE 59
Y +K + ++W DE + PE+ + + + + + + K + +
Sbjct: 144 YGSEPEKSRGAQSDFIWCDEIHKWQYPEETFDNLILGLRLGNNPLCIVTSTPKPTAFAKK 203
Query: 60 HYLSASSSDRQVIRMT 75
+ T
Sbjct: 204 LEKMTDEKGNPCVTTT 219
>gi|294661596|ref|YP_003580049.1| gp17 large terminase protein [Klebsiella phage KP15]
gi|292660757|gb|ADE35005.1| gp17 large terminase protein [Klebsiella phage KP15]
Length = 609
Score = 42.1 bits (97), Expect = 0.072, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
A+ D + N+ ++ DE D + I++ + L T G +
Sbjct: 234 AFASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRKSKILITTTPNGLNHFY 293
Query: 59 EHYLSASSSDRQVIRMTINET 79
+ + +A + T T
Sbjct: 294 DIWNAAIEGKSGFVPYTAIWT 314
>gi|222479188|ref|YP_002565425.1| hypothetical protein Hlac_0755 [Halorubrum lacusprofundi ATCC
49239]
gi|222452090|gb|ACM56355.1| hypothetical protein Hlac_0755 [Halorubrum lacusprofundi ATCC
49239]
Length = 546
Score = 42.1 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 20/199 (10%), Positives = 58/199 (29%), Gaps = 11/199 (5%)
Query: 53 GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG 112
+ + + + + + ++ + + + P + +
Sbjct: 303 PDTEFRTLWPAFEAPETLLTKVVSKDG---SAGLWRAENQQNPEAAIGRVLDLDWLRFVD 359
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQ 172
I + + + + G +A ++R++D Y V +R R
Sbjct: 360 PIPREDWSSLEWYAGLDFANPNNLAAEQRGETDYWALAVYAFDRENDQEYAVDTWRDRGY 419
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ-GMKMLPECATFDDGSNG 231
G L + L G++++ +++ P + +
Sbjct: 420 MWEEAATEF--VGVHLSDYPVGELLVESNFDGKEIAETIEDNVDVRVTPTASEGEK---- 473
Query: 232 VEAGISDMLDRMRSGRWKV 250
E + + +R + G+ KV
Sbjct: 474 -EQRLHRLANRFQQGKVKV 491
>gi|83954308|ref|ZP_00963028.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
gi|83841345|gb|EAP80515.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
Length = 408
Score = 42.1 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 28/260 (10%), Positives = 59/260 (22%), Gaps = 30/260 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + + +T TP +
Sbjct: 105 DPEGLRGPQFDAAWVDELAKWKKAEETWDQLQFALRLGEDPRACVTTTP----RNVGVLK 160
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVE 119
+S + + R G + + E
Sbjct: 161 NLLASPSTVTTHAPTEANAANLAGSFLEEVRARYRGTRLGRQELDGVLLADAEGALWTSE 220
Query: 120 EDIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWNRDSD----VIYVVKNYRCR 170
D+P + G+D + V+ + +
Sbjct: 221 RIEAGRVRDVPLLDRIVVGLDPATTAGAGADECGIVVVGAQTQGPPQDWRAVVLADCTVQ 280
Query: 171 EQTPIFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQYRRQGMKMLPECATFDDG 228
TP AA+ + + + D L + G Q ++ R+ + + G
Sbjct: 281 GATPSGWARAAISAMEQ-----YGADRLVAEVNQGGQMVAEVLRQVDPLVPVKSVHASRG 335
Query: 229 SNGVEAGISDMLDRMRSGRW 248
A + GR
Sbjct: 336 K---VARAEPVAALYEQGRV 352
>gi|327198432|ref|YP_004327020.1| terminase [Erwinia phage phiEa104]
gi|311875128|emb|CBX44388.1| terminase [Erwinia phage phiEa104]
Length = 534
Score = 42.1 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 32/261 (12%), Positives = 67/261 (25%), Gaps = 22/261 (8%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPED----VYFEGLTRI-NATQGLVTLTLTPLKGRS 55
E+ + Q +++DE Y R + ++ P
Sbjct: 166 YMELEKHAEAHQGIEYSAIYWDEFTHFSQSQVDYLMTRMRSGADGDSYMKCSMNPE-RDH 224
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQER-KRIIDSYPLHEREARTKGEPILGSGRI 114
+ + + + L +
Sbjct: 225 FVYSWVEPFLDEEG------YPDNEKCGRTRWFVIQEGVMYSDWERDEILKQFPLEIPQT 278
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL--VWNRDSDVIYVVKNYRCREQ 172
+ V I N + G ++ A R Y + +
Sbjct: 279 YTFVSGTIDDNPILDFIEPKYRGRLENNTPINVARLRYGNWKARAEGSSYFDRRWCEIVD 338
Query: 173 TPIFHVAALKSWG--KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ + +++W LP D D +G +++ ++ G + F D
Sbjct: 339 SVDEPASRVRAWDLAATLPSELNPDP---DWTAGVKMAKG-QKTGTFYVEHVKRFRDRPA 394
Query: 231 GVEAGISDMLDRMRSGRWKVF 251
GVE GI D R + + ++F
Sbjct: 395 GVEEGILDTA-RFDTAKVEIF 414
>gi|109290130|ref|YP_656379.1| gp17 terminase subunit [Aeromonas phage 25]
gi|104345803|gb|ABF72703.1| gp17 terminase subunit [Aeromonas phage 25]
Length = 612
Score = 41.7 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
A+ D + N+ ++ DE D + I++ + L T G +
Sbjct: 226 AFSSSPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSGRHSKILMTTTPNGLNHWY 285
Query: 59 EHYLSASSSD 68
+ + +A + +
Sbjct: 286 DIWTAAITPN 295
>gi|221213957|ref|ZP_03586930.1| putative TerL [Burkholderia multivorans CGD1]
gi|221166134|gb|EED98607.1| putative TerL [Burkholderia multivorans CGD1]
Length = 473
Score = 41.7 bits (96), Expect = 0.092, Method: Composition-based stats.
Identities = 30/260 (11%), Positives = 60/260 (23%), Gaps = 39/260 (15%)
Query: 1 LKAYEQGRD--KWQSNTVHYVWFDE--EPPEDVYFEGLTR-------INATQGLVTLTLT 49
A ++ K + + + W +E E + + R + T +
Sbjct: 119 FIALDRPEHERKLRGMQLTFAWLNEVKELAKPILDMLDLRVGRYPKDVRPTWYGLFGDTN 178
Query: 50 PLKGRSPIIEHYLSASSSDRQVIRMT---INETPHYNEQERKRIIDSYPLHEREARTKGE 106
R + + + ER ID+ P E +G+
Sbjct: 179 APDSDHWYYTLAEETKPEGYAFFRQPGGVVRDGDRWVVNERAENIDNLPPGYYERGMQGK 238
Query: 107 --------------PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
++ + P + + ++ + GMDFG AA
Sbjct: 239 KFDWIKVNLGNEYGFVVDGKPVHPDYADSLHCKPFELVKTQPLWIGMDFGLTP--AAVIG 296
Query: 153 VWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDK-RSGEQLSA-- 209
+ LK + + G+ D +
Sbjct: 297 QRKPMGG-WRIRSEVVATSMGARKFGIELKRHLAEIYPGFEIGGIYGDPAGDQRSQADDE 355
Query: 210 -----QYRRQGMKMLPECAT 224
R G + P
Sbjct: 356 DTPFRILRAAGFEARPAPTN 375
>gi|48697193|ref|YP_024923.1| putative TerL [Burkholderia phage BcepC6B]
gi|47778999|gb|AAT38362.1| putative TerL [Burkholderia phage BcepC6B]
Length = 473
Score = 41.7 bits (96), Expect = 0.092, Method: Composition-based stats.
Identities = 24/260 (9%), Positives = 52/260 (20%), Gaps = 39/260 (15%)
Query: 1 LKAYEQGRD--KWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQG-------LVTLTLT 49
A ++ K + + + W +E E + + R+ +
Sbjct: 119 FIALDRPEHERKLRGMQLTFAWLNEVKELAKPILDMLDLRVGRYPKDVPPTWYGIFGDTN 178
Query: 50 PLKGRSPIIEHYLSASSS---------------DRQVIRMTINETPHYNEQERKRIIDSY 94
DR V+ + +R +
Sbjct: 179 APDSDHWFYVLAEETKPEGYAFFRQPGGVMRDGDRWVVNPAAENIDNLPAGYYERGMQGK 238
Query: 95 PLHEREARTKGEPILGSGRIFPIVE--EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL 152
+ + + + + ++ + GMDFG AA
Sbjct: 239 KFDWIKVNLGNDYGFVVDGKPVHPDYADSLHCKPFELVKSQPLWIGMDFGLTP--AAVIG 296
Query: 153 VWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDK-RSGEQLSA-- 209
+ LK + + G+ D +
Sbjct: 297 QRKPMGG-WRIRSEVVATSMGARKFGIELKRHLAEIYPGFEVAGIYGDPAGDQRSQADDE 355
Query: 210 -----QYRRQGMKMLPECAT 224
R G + P
Sbjct: 356 DTPFRILRAAGFEAKPAPTN 375
>gi|294011207|ref|YP_003544667.1| hypothetical protein SJA_C1-12210 [Sphingobium japonicum UT26S]
gi|292674537|dbj|BAI96055.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 437
Score = 41.7 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 30/251 (11%), Positives = 59/251 (23%), Gaps = 18/251 (7%)
Query: 8 RDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + + W DE + + + L T + P++ ++
Sbjct: 140 AESLRGPQFSHGWADEIAKWAGGQAAWDNLMMGMRLGGAPRVLATTTPRPV-PLVRGLVA 198
Query: 64 ASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGE-PILGSGRIFPIVEE 120
+ D V R + H + + SY GE G ++
Sbjct: 199 RAGGDVVVTRGRTADNVAHLADGFLAAMERSYGGTRLGRQELDGELIEEVEGALWSRDLL 258
Query: 121 DIVINSLDIPEHWVQIGGMD---FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ + + +D + D + TP
Sbjct: 259 ERCRVAHVRGGLTRVVVAVDPPASAHGDACGIVVVGLGEDRRAYVIADA-TVEGATPEGW 317
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGIS 237
A D + + +G + R LP S G A
Sbjct: 318 ARA----ASGAALVHGADRVVAEANNGGAMVESVLRAAEAALPVRL--VHASRGKVARAE 371
Query: 238 DMLDRMRSGRW 248
+ +GR
Sbjct: 372 PVAALYEAGRV 382
>gi|254504019|ref|ZP_05116170.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
gi|222440090|gb|EEE46769.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
Length = 438
Score = 41.7 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 13/190 (6%), Positives = 31/190 (16%), Gaps = 21/190 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + L T + +
Sbjct: 142 DPEALRGPQFDIAWCDELAKWTYAEETFDMLQFGLRLGSKPRQLITTTPRPVPLLKRLM- 200
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE---------PILGS 111
+ + + + R GE
Sbjct: 201 --KQAGTAITHAPTKANALFLAPGFLEAVVGRYGGTRLGRQELDGELIEDRPDALWSRDG 258
Query: 112 GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + I D + R
Sbjct: 259 LEAARVAAAPEDLTRIVIAIDPPV---TATAKSDACGIVAAGLGSDGKAYVLADRSRRPA 315
Query: 172 QTPIFHVAAL 181
+ + AA+
Sbjct: 316 KPADWAEAAI 325
>gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
Length = 259
Score = 41.7 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 4/104 (3%)
Query: 9 DKWQSNTVHYVWFDEEPP-EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSS 67
D+ + T + DE +D + G + L TP + E + S+
Sbjct: 136 DQARGMTADTIIADEACFLDDDALTAFFPMRKETGRIFLLSTPNMRQGYFYETW--TSAK 193
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGS 111
+ I + + + + + E I
Sbjct: 194 RVRRITARSID-IPRRKAQVEFDKATMSEATFRREHLCEFIGAG 236
>gi|256819733|ref|YP_003141012.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
gi|256581316|gb|ACU92451.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
Length = 450
Score = 41.7 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 52/188 (27%), Gaps = 24/188 (12%)
Query: 20 WFDE--EPPEDVYFEGL-------TRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD-- 68
W +E E D Y R +G + +T P K + + + + +
Sbjct: 136 WIEEGGEFDYDSYSNLKISIGRWKNREYNLKGKLLITANPSK--NFLYKEFYTPYKEGTL 193
Query: 69 ---RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDI--V 123
R I+ + ++ + + ++ E++ G + I +
Sbjct: 194 NKRRAFIQALPYDNKMLPKEYIQNLENTLRGAEKQRLLNGLWEYDDDPNSLCDYDKILAI 253
Query: 124 INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALK- 182
N+ +P+ D VW +++ Y A +
Sbjct: 254 FNNDQLPKESTTYLTADIARFGSDLCVIGVWQG----WELIEVYTLATSATTEIQALINT 309
Query: 183 -SWGKWLP 189
+P
Sbjct: 310 LRMKYNIP 317
>gi|254474412|ref|ZP_05087798.1| phage DNA Packaging Protein [Ruegeria sp. R11]
gi|214028655|gb|EEB69490.1| phage DNA Packaging Protein [Ruegeria sp. R11]
Length = 417
Score = 41.7 bits (96), Expect = 0.100, Method: Composition-based stats.
Identities = 30/262 (11%), Positives = 57/262 (21%), Gaps = 32/262 (12%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE D + + T V +T TP +
Sbjct: 114 DPEALRGPQFDAAWADELAKWKRGQDSWDMLQFALRLGTDPRVCVTTTP----RNVSVLR 169
Query: 62 LSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG-EPILGSGRIFPIV 118
+S + + + + Y G G ++
Sbjct: 170 DLLASPSTVQTHAATEANRANLATSFIEEVRNRYAGSRLGRQELDGVLLQDVEGALWCNA 229
Query: 119 ----EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCR 170
+ LD V + YV+ + +
Sbjct: 230 GLVGAQVRSAPPLDRVVVAVDPAVSAGKSSDACGILVVGAVLQGPPQDWRAYVLADCTVQ 289
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ---GMKMLPECATFDD 227
P+ A+ + D + + G L RQ + P A
Sbjct: 290 GARPLVWAQAVVDAAHR----FDADRVVAEVNQGGALVESLLRQIDPLVPFRPRHAARSK 345
Query: 228 GSNGVEAGISDMLDRMRSGRWK 249
G+ + GR +
Sbjct: 346 GARA-----EPVAALYEQGRVR 362
>gi|20092622|ref|NP_618697.1| terminase [Methanosarcina acetivorans C2A]
gi|19917902|gb|AAM07177.1| terminase [Methanosarcina acetivorans C2A]
Length = 493
Score = 41.7 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRINATQG---LVTLTLTPLKGRS--- 55
+E+ + +Q + Y+ FDE +F L+R +T G + T P
Sbjct: 108 HEKSKHNYQGAQICYIGFDELCHFSEGQFFYLLSRNRSTCGVKPYMRATCNPDPDSWVAD 167
Query: 56 ---PIIEHYLSASSSDRQ-VIRMTINETPHYNEQERKRIIDSYPLH 97
I+ +R VIR + H + K +
Sbjct: 168 FIAWWIDQETGYPIPERSGVIRYFVRHLDHIYWADTKTELREQTKD 213
>gi|302381364|ref|YP_003817187.1| hypothetical protein Bresu_0249 [Brevundimonas subvibrioides ATCC
15264]
gi|302191992|gb|ADK99563.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
15264]
Length = 556
Score = 41.7 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 31/258 (12%), Positives = 62/258 (24%), Gaps = 27/258 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDVYFE----------GLTRI---NATQGLVTLTLTPLKG 53
+ + W DE L R+ + + +T TP
Sbjct: 245 DPEALRGPQFAAAWADEFCAWPRGGRGGRGGPGATLALLRMGLRLGERPRLVVTTTPKPI 304
Query: 54 RSPIIEHYLSASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEPILGS 111
+ + H + + Y + +G +
Sbjct: 305 G----ALRDLRAEPGLVQTHAATRDNADHLAAGFVEGLERLYGGTRKAAQELEGRVVEQE 360
Query: 112 GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
G +F L+ + + A G +V R D +V+ +
Sbjct: 361 GSLFTAEMMGRARGVLEGSFDRIVVAIDPTTTAGGNACGIVVAGRVGDRAHVLADRSVAG 420
Query: 172 QTPIFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
P A+++ ++ A + Q GE + A + G + G
Sbjct: 421 LGPDGWARRAVRAAEEFGAVALVVEVNQ----GGEMVRAVLKTAGCSVRIREVRATKGKR 476
Query: 231 GVEAGISDMLDRMRSGRW 248
+ GR
Sbjct: 477 IRA---EPVAALYEQGRV 491
>gi|15088772|ref|NP_150161.1| putative large terminase subunit [Streptococcus phage MM1]
gi|15074918|emb|CAC48095.1| putative large terminase subunit [Streptococcus phage MM1]
Length = 436
Score = 41.7 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 28/267 (10%), Positives = 65/267 (24%), Gaps = 43/267 (16%)
Query: 19 VWFDEEPPE---DVYFEG---LTRINATQGLVTLTL-------TPLKGRSPIIEHYLSAS 65
VW++E + + + R + P + E +
Sbjct: 129 VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNK 188
Query: 66 SSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN 125
+ +E EQ + I R + +
Sbjct: 189 NYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMS--MFH 246
Query: 126 SLDIPEHWVQIGGMDFGWHH-----PFAAGHLVWNRDSDVIYVVKNYRCR------EQTP 174
++D ++ G+ F A + ++ + ++ P
Sbjct: 247 AIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKG-KVILLDTWYYSPAGQVVKKAP 305
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQH--DKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ ++ + + + LQ+ D G + + G+K P
Sbjct: 306 SQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTM--- 362
Query: 233 EAGISDMLDRMRSGRW--------KVF 251
I + GR+ K+F
Sbjct: 363 ---IDSFQSLLAQGRFYYLNTENNKIF 386
>gi|269975283|gb|ACZ55507.1| large subunit terminase [Staphylococcus phage SA1]
Length = 533
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 32/282 (11%), Positives = 67/282 (23%), Gaps = 60/282 (21%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQ-GLVTLTLTPLKGRSPIIE 59
E+ + Q ++FDE Y + R A + +++ P I +
Sbjct: 170 EKHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGDSYMKISMNPD-RDHFIYD 228
Query: 60 HYLSASSSDRQ-----------------------------------------VIRMTINE 78
+ I TI++
Sbjct: 229 WVEPFLDEEGYPDPEKCGRIRWYVMNDGVMVSDWERDKILEMFPLEIPQTYTFISGTIDD 288
Query: 79 TPHYN--EQERKRIIDSYPLHEREARTKGEP-ILGSGR-IFPIVEEDIVINSLDIPEHWV 134
P + E + + +++ G G + +IV + +
Sbjct: 289 NPILDFLEPKYRGKLENNTPVNVARLRFGNWKARAEGSNYWQRQWCEIVDSLPEDVFDVR 348
Query: 135 QIGGMDF------GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA---LKSWG 185
A + ++ Y++ R R++ +S G
Sbjct: 349 AWDLAATLPSEVNPNPDWTAGVKMGKSKKDGCYYIIDVVRFRDRPSGVETQINLTAESDG 408
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
K P D K L + +G + + D
Sbjct: 409 KRTGIFIPQDPGAAGKSYATSLIRKLAEKGYRARAKPTNKDK 450
>gi|238801790|ref|YP_002922840.1| terminase, large subunit [Enterobacteria phage WV8]
gi|216263003|gb|ACJ71871.1| terminase, large subunit [Enterobacteria phage WV8]
Length = 533
Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 32/282 (11%), Positives = 67/282 (23%), Gaps = 60/282 (21%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQ-GLVTLTLTPLKGRSPIIE 59
E+ + Q ++FDE Y + R A + +++ P I +
Sbjct: 170 EKHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGDSYMKISMNPD-RDHFIYD 228
Query: 60 HYLSASSSDRQ-----------------------------------------VIRMTINE 78
+ I TI++
Sbjct: 229 WVEPFLDEEGYPDPEKCGRIRWYVMNDGVMVSDWERDKILEMFPLEIPQTYTFISGTIDD 288
Query: 79 TPHYN--EQERKRIIDSYPLHEREARTKGEP-ILGSGR-IFPIVEEDIVINSLDIPEHWV 134
P + E + + +++ G G + +IV + +
Sbjct: 289 NPILDFLEPKYRGKLENNTPVNVARLRFGNWKARAEGSNYWQRQWCEIVDSLPEDVFDVR 348
Query: 135 QIGGMDF------GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA---LKSWG 185
A + ++ Y++ R R++ +S G
Sbjct: 349 AWDLAATLPSEINPNPDWTAGVKMGKSKKDGCYYIIDVVRFRDRPSGVETQINLTAESDG 408
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
K P D K L + +G + + D
Sbjct: 409 KRTGIFIPQDPGAAGKSYATSLIRKLAEKGYRARAKPTNKDK 450
>gi|38707825|ref|NP_944884.1| Terminase, large subunit [Enterobacteria phage Felix 01]
gi|3249698|gb|AAC24136.1| unknown [Enterobacteria phage Felix 01]
gi|33340428|gb|AAQ14779.1| unknown [Enterobacteria phage Felix 01]
Length = 533
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 32/282 (11%), Positives = 67/282 (23%), Gaps = 60/282 (21%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQ-GLVTLTLTPLKGRSPIIE 59
E+ + Q ++FDE Y + R A + +++ P I +
Sbjct: 170 EKHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGDSYMKISMNPD-RDHFIYD 228
Query: 60 HYLSASSSDRQ-----------------------------------------VIRMTINE 78
+ I TI++
Sbjct: 229 WVEPFLDEEGYPDPEKCGRIRWYVMNDGVMVSDWERDKILEMFPLEIPQTYTFISGTIDD 288
Query: 79 TPHYN--EQERKRIIDSYPLHEREARTKGEP-ILGSGR-IFPIVEEDIVINSLDIPEHWV 134
P + E + + +++ G G + +IV + +
Sbjct: 289 NPILDFLEPKYRGKLENNTPVNVARLRFGNWKARAEGSNYWQRQWCEIVDSLPEDVFDVR 348
Query: 135 QIGGMDF------GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA---LKSWG 185
A + ++ Y++ R R++ +S G
Sbjct: 349 AWDLAATLPSEINPNPDWTAGVKMGKSKKDGCYYIIDVVRFRDRPSGVETQINLTAESDG 408
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
K P D K L + +G + + D
Sbjct: 409 KRTGIFIPQDPGAAGKSYATSLIRKLAEKGYRARAKPTNKDK 450
>gi|227496997|ref|ZP_03927248.1| phage Terminase [Actinomyces urogenitalis DSM 15434]
gi|226833491|gb|EEH65874.1| phage Terminase [Actinomyces urogenitalis DSM 15434]
Length = 480
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 24/254 (9%), Positives = 55/254 (21%), Gaps = 35/254 (13%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPP-EDVYFEGLTRINATQ----GLVTLTLTPLKG------ 53
+ ++ + TV + DE D E L NA + T TP
Sbjct: 156 ARSKNSARGFTVDIIVLDEAQDLTDEALEALRSTNAAGPQANPQIIYTGTPPSPKNDGEV 215
Query: 54 -----------------RSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPL 96
+ + + + + + +
Sbjct: 216 FTRFRSGALSGTTASTCWHEWSAAPDADLDDETTIAQANPAYQIRLSAKTVADEREDISE 275
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
G S + + + +D + + R
Sbjct: 276 EGFARERLGMWDEVSTSAVIDQATWLRCADMASQVNDRLALAVDVQPDRTSGSVAVAGQR 335
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSG-EQLSAQYRRQG 215
++ +V + + + D+R L +++G
Sbjct: 336 KDGRWHIEVI------DNRNNVGWILQRVAGIWARQRIRTVVIDRRGPAASLIEPLQQKG 389
Query: 216 MKMLPECATFDDGS 229
+K+ A S
Sbjct: 390 IKVTTTDAAQMAAS 403
>gi|120436787|ref|YP_862473.1| phage terminase large subunit [Gramella forsetii KT0803]
gi|117578937|emb|CAL67406.1| phage terminase large subunit [Gramella forsetii KT0803]
Length = 506
Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEPPED--VYFEGLTRINATQG---LVTLTLTPLKGRSPII 58
+E+ WQ + + + FDE +F L+R + V T P S +
Sbjct: 107 HEKNVTSWQGSQIPMIGFDELTHFSKQTFFYLLSRNRSNSSIKPRVRATCNPD-PDSWVY 165
Query: 59 EHYLSASSSDRQVIR 73
+ D I
Sbjct: 166 DLIKWWIGEDGFPIP 180
>gi|113461528|ref|YP_719597.1| hypothetical protein HS_1385 [Haemophilus somnus 129PT]
gi|170719075|ref|YP_001784229.1| hypothetical protein HSM_0897 [Haemophilus somnus 2336]
gi|112823571|gb|ABI25660.1| conserved hypothetical protein [Haemophilus somnus 129PT]
gi|168827204|gb|ACA32575.1| conserved hypothetical protein [Haemophilus somnus 2336]
Length = 515
Score = 40.9 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 31/315 (9%), Positives = 60/315 (19%), Gaps = 83/315 (26%)
Query: 6 QGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQ-------------GLVTLTLTP 50
+ K S + +W +E P + E +TR + +
Sbjct: 122 KDVKKLMSLELTGIWINEAQFLPVSLVTEAVTRTGRYPEKRVEEGFMGATWNGMIMDTNS 181
Query: 51 LKGRSPIIEHYLSASSSD---------------RQVIRMTINETPHYNEQERKRIIDSYP 95
+ +I +T +++ ++ I +
Sbjct: 182 PDDDHWWYQFEQGIDEETEQPLKPKGWEFFVQPGALIDITGMPLATLSDEIKRNIEQGHY 241
Query: 96 LHEREART---------------KGEPILGSGRIFPIVEEDIVINSLD------------ 128
R G + V N
Sbjct: 242 DDYLGHRFVANPIAENVINHKKGHGYWFDNIQGQTLNWIKSRVCNEFATVQQGKPVFGDH 301
Query: 129 -------------IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT-- 173
+ W G+DFG AA + +V
Sbjct: 302 FNKELHVSTEKLVPVKGWETFIGLDFGLTP--AAIIGQIAPIGQ-LRIVDEIVATGMGIE 358
Query: 174 ---PIFHVAALKSW--GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDG 228
L+S + G+Q + G P +
Sbjct: 359 RFITEQLSPLLRSRYAECAIQIIGDPAGVQRAQTDERTCFQLLEEYGFNARPAESNNTTA 418
Query: 229 SNGVEAGISDMLDRM 243
+ L R+
Sbjct: 419 ---RLEAVRWWLSRL 430
>gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
Length = 410
Score = 40.9 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 31/253 (12%), Positives = 60/253 (23%), Gaps = 25/253 (9%)
Query: 8 RDKWQSNTVHYVWFDEEPPE---DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHYLS 63
D + W DE + + + + V +T TP ++
Sbjct: 120 PDLLRGPQHDAAWADELAAWRRPEAWDNLMFGLRLGPDPRVVVTTTPRP-----VKLIRD 174
Query: 64 ASSSDRQVIR--MTINETPHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEE 120
+ V+ T + ++II Y GE + +
Sbjct: 175 LLNDPTCVVTRGSTYENAANLAPAFLEQIISRYEGTRLGRQELYGEVLDDVPGALWQRKR 234
Query: 121 DIVINSLDIPEHWVQIGGMDFG-----WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ + PE + +D D D + R +P
Sbjct: 235 IDELRVREAPELVRVVVAIDPAVTSEEGSDETGIVVAGRGVDGDAYVLAD--RSCRMSPD 292
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ + D + + +G L R +P A V A
Sbjct: 293 GWA----RRAVKAYYDFDGDRIVGEVNNGGDLVETVIRTVDPKVPYKAVRASRGKAVRA- 347
Query: 236 ISDMLDRMRSGRW 248
+ G+
Sbjct: 348 -EPVAALYEQGKV 359
>gi|163746673|ref|ZP_02154030.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
gi|161379787|gb|EDQ04199.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
Length = 414
Score = 40.9 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 29/259 (11%), Positives = 57/259 (22%), Gaps = 28/259 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + + + V +T TP +
Sbjct: 111 DPEGLRGPQFDAAWVDELAKWKRGQEAWDQLQFALRLGERPQVCVTTTP----RNVDVLK 166
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPIL-GSGRIFP-- 116
S + + R G + G ++
Sbjct: 167 ALLQSPSTVTTHAPTEANAANLAGSFLEEVRARYRGTRLGRQELDGVLLADAEGALWTSA 226
Query: 117 --IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCR 170
V LD + + V+ + +
Sbjct: 227 LLEAGRVQVAPELDRIVVGLDPATTSGAGSDECGIVVVGAQTQGPPQEWRAVVLADCTVQ 286
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQGMKMLPECATFDDGS 229
TP A + + D L + + G+ +S R+ + L T
Sbjct: 287 GATPNGWAQAAIA----AMTRYGADRLVAEVNQGGQLVSEVLRQ--VDPLVSLKTVHAAR 340
Query: 230 NGVEAGISDMLDRMRSGRW 248
V A + GR
Sbjct: 341 GKV-ARAEPVAALYEQGRV 358
>gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N]
gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N]
Length = 512
Score = 40.9 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 20/227 (8%), Positives = 42/227 (18%), Gaps = 65/227 (28%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLV--TLTLTPLK--GRSPII 58
++W+ + DE + + G R +T P ++
Sbjct: 133 DENRWRGRPHDLIVLDEATELREHQARFVLGWNRTTKAGQRCRVLMTFNPPTTVEGRWVV 192
Query: 59 EHYLSASSSD----------------------------------------RQVIRMTINE 78
E++ R I I +
Sbjct: 193 EYFAPWLDPKHPHPAKPGELRWFAVIDGKEVEVEGGAPFAHNGETIVPRSRTFIPSRIAD 252
Query: 79 TPHYNEQERKRIIDSYPLHEREARTKGEPILGSGR--------IFPIVEEDIVINSLDIP 130
P + ++ S P R G+ G + + +
Sbjct: 253 NPFLMGTGYESVLQSLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLA 312
Query: 131 EHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTPI 175
+ G + + TP
Sbjct: 313 PMDSLGLDVARGGRDKTILA-------RRHGWWFDEPLVYPGKDTPD 352
>gi|260427953|ref|ZP_05781932.1| phage DNA Packaging Protein [Citreicella sp. SE45]
gi|260422445|gb|EEX15696.1| phage DNA Packaging Protein [Citreicella sp. SE45]
Length = 409
Score = 40.9 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 25/260 (9%), Positives = 55/260 (21%), Gaps = 29/260 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + V +T TP +
Sbjct: 105 DPEGLRGPQFDAAWVDELAKWKKARETWDMLQFALRLGEHPQVCVTTTP----RNVGILK 160
Query: 62 LSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPIL-GSGRIFPIV 118
V R + + + + R G + G ++
Sbjct: 161 ELLELPSTVVTRAKTEANRANLAESFLEEVRARYGNSRLARQELDGILVTDVDGALWTGE 220
Query: 119 EEDIVINSLDIPEHWVQIGGM-----DFGWHHPFAAGHLVWNRDSD----VIYVVKNYRC 169
D + + D + +V+++
Sbjct: 221 MLDRAQALAPPATFDRIVVAVDPPAGDGKASDACGIVVAGVVCEGPPQAWRAWVLEDASV 280
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ-YRRQGMKMLPECATFDDG 228
+ +P A W D + + G + R+ ++ G
Sbjct: 281 QGVSPTGWAQA----AAAAYERWQADRVVAEVNQGGAMVETVLRQVSPQVPLRKVHATRG 336
Query: 229 SNGVEAGISDMLDRMRSGRW 248
A + GR
Sbjct: 337 K---AARAEPVAALYEQGRV 353
>gi|33340317|gb|AAQ14668.1|AF320576_95 unknown [Enterobacteria phage Felix 01]
Length = 538
Score = 40.9 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 32/282 (11%), Positives = 67/282 (23%), Gaps = 60/282 (21%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINATQ-GLVTLTLTPLKGRSPIIE 59
E+ + Q ++FDE Y + R A + +++ P I +
Sbjct: 175 EKHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGDSYMKISMNPD-RDHFIYD 233
Query: 60 HYLSASSSDRQ-----------------------------------------VIRMTINE 78
+ I TI++
Sbjct: 234 WVEPFLDEEGYPDPEKCGRIRWYVMNDGVMVSDWERDKILEMFPLEIPQTYTFISGTIDD 293
Query: 79 TPHYN--EQERKRIIDSYPLHEREARTKGEP-ILGSGR-IFPIVEEDIVINSLDIPEHWV 134
P + E + + +++ G G + +IV + +
Sbjct: 294 NPILDFLEPKYRGKLENNTPVNVARLRFGNWKARAEGSNYWQRQWCEIVDSLPEDVFDVR 353
Query: 135 QIGGMDF------GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA---LKSWG 185
A + ++ Y++ R R++ +S G
Sbjct: 354 AWDLAATLPSEINPNPDWTAGVKMGKSKKDGCYYIIDVVRFRDRPSGVETQINLTAESDG 413
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDD 227
K P D K L + +G + + D
Sbjct: 414 KRTGIFIPQDPGAAGKSYATSLIRKLAEKGYRARAKPTNKDK 455
>gi|85375635|ref|YP_459697.1| Phage DNA packaging protein [Erythrobacter litoralis HTCC2594]
gi|84788718|gb|ABC64900.1| Phage DNA Packaging Protein [Erythrobacter litoralis HTCC2594]
Length = 450
Score = 40.9 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 21/256 (8%), Positives = 54/256 (21%), Gaps = 21/256 (8%)
Query: 8 RDKWQSNTVHYVWFDEEPPED--------VYFEGLTRINATQGLVTLTLTPLKGRSPIIE 59
+ + + W DE D + + L T + + +
Sbjct: 148 PESLRGPQHTHAWCDEIAKWDNAGLRALAAWDNLQMGMRLGDHPRVLATTTPRTVALMQR 207
Query: 60 HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEP-ILGSGRIFP 116
Y S + + + + +GE G ++
Sbjct: 208 LYAEVESGAVVLAQGKTEDNAGVLPTAYFEAMLDQYGATSLGRQELEGEMLEEVDGALWS 267
Query: 117 IVEEDIVINSLDIPEHWVQIGGMD---FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + E + G+D D + + + +
Sbjct: 268 RALLEQCRTAGTGAERIRVVVGVDPPASSSGDACGIVVAAKLNDGNAEVLADC-SVEKAS 326
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
P A+ + K + + + A+ +
Sbjct: 327 PETWARAVSNAAKAWQVDRIVAEANQGGAMVRSVL-HAANVSLPVKLVHASRGKAARA-- 383
Query: 234 AGISDMLDRMRSGRWK 249
+ +GR +
Sbjct: 384 ---EPVAALYEAGRVR 396
>gi|281358561|ref|ZP_06245040.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
gi|281314909|gb|EFA98943.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
Length = 488
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 16/190 (8%), Positives = 34/190 (17%), Gaps = 30/190 (15%)
Query: 7 GRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINA---------TQGLVTLTLTPLKGRS 55
K S W +E E P + L R T + + P
Sbjct: 125 DVKKLLSLECTGAWINEAREVPLTIVNGILGRTGRFPPKADAPTTWAGLIMDTNPPDTDH 184
Query: 56 PIIEHYLSASSSDRQVI------------------RMTINETPHYNEQER-KRIIDSYPL 96
+ E ++
Sbjct: 185 WYYKMAELDKPEGYSFYRQPGGILEVAEGVYAPNPEAENIENLPLGYDYYLRQAKPGVDP 244
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
+ + S I+ P + + G+ + +
Sbjct: 245 NYIRVMLMAQYGTLSADRPVYTTFKENIHVAARPLEIHRNLPLLLGFDFGLTPACVFCQQ 304
Query: 157 DSDVIYVVKN 166
+ V++
Sbjct: 305 LGGQLRVLRE 314
>gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009]
Length = 394
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 8/109 (7%), Positives = 27/109 (24%), Gaps = 14/109 (12%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + ++
Sbjct: 40 FDVAWVEEAETVSEKSLDTLIPTIRKPGSELWFSFNPAEEDGAVYRRFVKPYKAIIDKQG 99
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRI-IDSYPLHEREARTKGEPILG 110
+ V +++ + P + + + +A + E +
Sbjct: 100 YYEDDEVYVGKVSYLDNPWLPAELKNDAQKGECDANYEDALIQPEWVEA 148
>gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6]
Length = 469
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 27/110 (24%), Gaps = 15/110 (13%)
Query: 16 VHYVWFDEEPPEDV--YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL----------- 62
W +E + I + + P + + + ++
Sbjct: 101 FDVAWVEEAETVSEKSLDTLIPTIRKPGSELRFSFNPAEEDGAVYKRFVKPYKAIIDKQG 160
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREAR--TKGEPILG 110
D V ++ + P + + + ++ R GE
Sbjct: 161 YYEDDDLYVGNVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDAN 210
>gi|160700611|ref|YP_001552286.1| hypothetical protein BA3_0017 [Thalassomonas phage BA3]
gi|157787730|gb|ABV74302.1| hypothetical protein BA3_0017 [Thalassomonas phage BA3]
Length = 556
Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 120 EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVA 179
E+ + + D G + + + ++ Y R++ ++
Sbjct: 345 EEGRFTHIPVEPALPVYTYWDLGRNDD--MVLWLMQPHGKELRLIACYSNRDEGMEHYIN 402
Query: 180 ALKSWGKWLPWA-----WPHDGLQHDKRSGEQLSAQYRRQGMKML 219
LK + PHD HD + E ++ G+K
Sbjct: 403 WLKDFQAKYNIRFGEHLAPHDIAVHDLMTNESRIDVAKKMGIKFK 447
>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
Length = 572
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 30/251 (11%), Positives = 59/251 (23%), Gaps = 21/251 (8%)
Query: 19 VWFDEE--PPEDVYFEGLTRINATQGLVTLT--LTPLKGRSPIIEHYLSASSSDRQVIRM 74
V DE + + + + L T G A I +
Sbjct: 170 VVVDEASGVSDRAFEVLRGALTEDNNKMLLISQFTRPTG-HFADSQMELAEQGLYTAITL 228
Query: 75 TINETPHYNEQERKRIIDSYPLH---EREARTKGE-PILGSGRIFPIVEEDIVIN---SL 127
+P N + + Y E R G P SG + D
Sbjct: 229 NSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVLGVCPDDASGFLISRSLVDKGFEAVIEF 288
Query: 128 DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKW 187
WV + + G + + V+ + E +
Sbjct: 289 ADEWGWVAVADVAGGEGRDSSVLKIGKVCGFGSERQVEVVKAIEAPADMDGVQFARFIHQ 348
Query: 188 LPWAWPH-DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG--------ISD 238
+ + G + + + G+ + +N V+
Sbjct: 349 ETAGYTNISVGIDADGYGLTTAQECEKLGVNVTRIHWGRPPHANSVKQRFPKEKDFACVM 408
Query: 239 MLDRMRSGRWK 249
+ + + +GR K
Sbjct: 409 VKEALGTGRLK 419
>gi|89054122|ref|YP_509573.1| hypothetical protein Jann_1631 [Jannaschia sp. CCS1]
gi|88863671|gb|ABD54548.1| protein of unknown function DUF264 [Jannaschia sp. CCS1]
Length = 483
Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 43/196 (21%), Gaps = 32/196 (16%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + Q + T + + + +
Sbjct: 180 DPEALRGPQFDLAWADELAKWPKAQETWDMLQFGLRLGQHPQQIVTTTPRNVNVLKDL-- 237
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG---------EPILG- 110
+ Y + S R G + G
Sbjct: 238 -LARDGVAHTHAPTEANSAYLADSFLTEVRSRYGDTRLGRQELDGVLLDDVDNALWVRGA 296
Query: 111 --SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVV 164
GR+ + VI ++D P + D V+
Sbjct: 297 IDEGRLTDAPDVTRVIVAVDPP-------VTGHAGSDACGIVVVGIIERGDPAQWRAVVL 349
Query: 165 KNYRCREQTPIFHVAA 180
++ + +P A
Sbjct: 350 EDCSVQGVSPNQWANA 365
>gi|126739361|ref|ZP_01755054.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6]
gi|126719461|gb|EBA16170.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6]
Length = 433
Score = 40.5 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 24/265 (9%), Positives = 51/265 (19%), Gaps = 36/265 (13%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + +T TP +
Sbjct: 130 DPEALRGPQFDLAWLDELAKWKRGREAWDMLQFALRLGKDPRACITTTPRNSQ----ILR 185
Query: 62 LSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG---------EPILG 110
+ S + + + + Y +G
Sbjct: 186 DVLAQSSTVQTHAPTDANRANLAPSFLEEMKQRYAGTRLGRQELEGCLLSDVEGALWSSA 245
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHL----VWNRDSDVIYVVKN 166
E LD V YV+ +
Sbjct: 246 ELAGQQCKE----APELDRIVVAVDPAVSAGKASDACGILVAGARHAGTPSEWETYVLAD 301
Query: 167 YRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
+ + P+ A+ + + + + G + R+ +
Sbjct: 302 RTVQGEGPLSWAKAVIAAKEEFGACRVIAEVN---QGGALVENLLRQVDPNVPFTAHHAS 358
Query: 227 DGSNGVEAGISDMLDRMRSGRWKVF 251
G + GR VF
Sbjct: 359 KGKTARA---EPVAALYEQGR--VF 378
>gi|222147998|ref|YP_002548955.1| large terminase [Agrobacterium vitis S4]
gi|221734986|gb|ACM35949.1| large terminase [Agrobacterium vitis S4]
Length = 459
Score = 40.5 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 21/189 (11%), Positives = 45/189 (23%), Gaps = 18/189 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGL--TRINATQGLVTLTLTPLKGRSPIIEH 60
+ + HY W DE + + R+ +T TP P+
Sbjct: 165 DPESLRGPQFHYAWCDEIAKWKHAEETFDMLQFSLRLGDDP-RQVITTTP----RPVPIL 219
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIV 118
+ ++ R++ + + R GE I
Sbjct: 220 KRLLADPGTRLTRLSTFGNACNLAPGFIEALQARYGGTRLGRQELDGELIEDREDALWRR 279
Query: 119 EEDIVINSLDIPEHWVQIGGMDF----GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + G+D G +R + + ++P
Sbjct: 280 DRLEQLTVRLSEPLHRIVVGVDPPSGAGAQSVCGIIVAGLDRLGRAVVLADC-SVTGESP 338
Query: 175 IFHVAALKS 183
A+
Sbjct: 339 ASWATAVVR 347
>gi|150397098|ref|YP_001327565.1| hypothetical protein Smed_1896 [Sinorhizobium medicae WSM419]
gi|150028613|gb|ABR60730.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419]
Length = 443
Score = 40.5 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 29/142 (20%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINAT----------------QGLVTLTLTP 50
+K ++F+E + P ++R+ P
Sbjct: 115 EKILGQEYATLYFNESSQIPWASVEMAMSRLAQKCELAPAIAAATGRRYLALKAYFDCNP 174
Query: 51 LKGRSPIIEHYLSASSS----------DRQVIRMTINETPHYNEQERKRIIDSYPLHERE 100
+ + + D +++ + E ++ S +R
Sbjct: 175 PSKLHWSFQMFRAKMKPGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASMSAPKRL 234
Query: 101 ARTKGEPIL-GSGRIFPIVEED 121
GE SG ++ + +
Sbjct: 235 RFEAGEWASEVSGALWALEDRK 256
>gi|194173092|ref|YP_002003567.1| terminase large subunit [Escherichia phage rv5]
gi|114796130|gb|ABI79304.1| terminase large subunit [Escherichia phage rv5]
Length = 515
Score = 40.5 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 11/77 (14%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINAT-QGLVTLTLTPLKGR---- 54
Y Q + Q V FDE + Y R + + ++ P
Sbjct: 122 YVQDKLNHQGLEYTMVCFDEGTQFEWEQIDYLMSRLRSQSKYPSRMVISCNPDSEHMLAK 181
Query: 55 --SPIIEHYLSASSSDR 69
++
Sbjct: 182 LVRWWLDDEGYPDPEKC 198
>gi|254293613|ref|YP_003059636.1| hypothetical protein Hbal_1247 [Hirschia baltica ATCC 49814]
gi|254042144|gb|ACT58939.1| protein of unknown function DUF264 [Hirschia baltica ATCC 49814]
Length = 397
Score = 40.5 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 15/195 (7%), Positives = 39/195 (20%), Gaps = 21/195 (10%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSP 56
+ D + W DE + + + + T +
Sbjct: 96 FVFSAEDPDSLRGPQFDAAWGDEIGAWHRGQTCWDMLMFGLRLGDNPRICATTTPRPTPL 155
Query: 57 IIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-------- 106
I + + ++ R + E H + + R GE
Sbjct: 156 IRKL---VKLDNIEITRASTLENAHNLAPSFLEAVQANYGGTRLGRQEIDGELIDDPKGA 212
Query: 107 -PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165
+ + + + G+ +D + +
Sbjct: 213 LWLRSQIETNRTINAKHEFQRIVVAIDPPISKGV---NADTCGIIAAGLRQDGKSVIIAD 269
Query: 166 NYRCREQTPIFHVAA 180
+ + A
Sbjct: 270 ASVQGLRPLDWAARA 284
>gi|209544598|ref|YP_002276827.1| hypothetical protein Gdia_2467 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532275|gb|ACI52212.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 491
Score = 40.1 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 29/290 (10%), Positives = 59/290 (20%), Gaps = 47/290 (16%)
Query: 1 LKAYEQGRD--KWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGL---------VTLT 47
+A ++ S + W +E E P V R+ + +
Sbjct: 119 FRALDRPDQVGNLLSLELTGAWINEAREVPWAVIEAVQGRVGRYPAKRDGGATWSGIIMD 178
Query: 48 LTPLKGRSPIIEHYLSASSSDRQVIRM-----------------------TINETPHYNE 84
P S + + +D +
Sbjct: 179 TNPPDAESEWYKFFEEKDHTDAVEAIAQVIPGMTVERYARIFKQPSGRAPNAENLDNLPP 238
Query: 85 QERKRIIDSYPLHEREARTKGE--PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG 142
+R+ + G+ ++ +FP + DFG
Sbjct: 239 AYYQRLAVGKTEEYVKVYIDGDYGFVMDGKAVFPEYSDTFHCRECRTVPDLPVYRSWDFG 298
Query: 143 WHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWL------PWAWPHDG 196
A VV + + G
Sbjct: 299 LTP--ACVFSQMLPSGQ-WIVVDELVATAMGVDRFSDQVLAHSAQHFPRTEFIDVGDPAG 355
Query: 197 LQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSG 246
+Q + +G+ + T V + + D +SG
Sbjct: 356 MQKAQTDERTCFEILYGKGIAIEGGLQTLAIRLESVRRPLRTLADGAQSG 405
>gi|13476623|ref|NP_108193.1| hypothetical protein mlr8003 [Mesorhizobium loti MAFF303099]
gi|14027385|dbj|BAB53654.1| mlr8003 [Mesorhizobium loti MAFF303099]
Length = 462
Score = 40.1 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 33/269 (12%), Positives = 68/269 (25%), Gaps = 58/269 (21%)
Query: 4 YEQGRDKWQSNTVHYVWFDEEPPEDV--YFEGLTRINATQG---LVTLTLTPLKGRS--- 55
+E+ WQ + + FDE ++ L+R + G V T P
Sbjct: 115 HEKTIYNWQGAQIPLICFDELTHFSAKQFWYMLSRNRSMCGVRPYVRATCNPDADSWVAE 174
Query: 56 ---PIIEHYLSASSSDRQ----------------------------------------VI 72
I+ + +R I
Sbjct: 175 FISWWIDQETGFAIPERAGVIRWFIRIGDTIIWASSREELAHHVNPIDGEPIPPKSVTFI 234
Query: 73 RMTINETPHYNEQE--RKRIIDSYPLHEREARTKGEPIL--GSGRIFPIVEEDIVINSL- 127
+++ + + + P ERE G + +G +F ++V
Sbjct: 235 PAKLSDNALLMAADPGYLANLMAQPTVERERLLGGNWKIRPAAGLLFQRGWCEVVDAVPA 294
Query: 128 --DIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
W + P + D Y+V ++ +P +K+
Sbjct: 295 GVTWMRGWDLASTPKVEGNDPDGTAGTKIGKLPDGRYIVGHHVKDFLSPAGVERLIKNTA 354
Query: 186 KWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
+ Q ++G+ A +
Sbjct: 355 EADGRNAKISLPQDPGQAGKSQVANLVKL 383
>gi|189240300|ref|XP_001813879.1| PREDICTED: hypothetical protein [Tribolium castaneum]
Length = 599
Score = 40.1 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 13/147 (8%), Positives = 34/147 (23%), Gaps = 12/147 (8%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSP--IIEHYLSASSSDRQ 70
N H++WFD + YF R + + G + + + + S D
Sbjct: 380 GNDWHWLWFD--SRYNWYFNVKFRGFNSGNWLWFDS----GYNWNGVDFDFWAFYSGDGF 433
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVIN--SLD 128
++ + + + + + D
Sbjct: 434 DSGYNWYNNINFGGFYSGNWLWFDS--WYNWYFNVKFRGFNSGNWLWFDSGHNWYRVDFD 491
Query: 129 IPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+ + G ++ +
Sbjct: 492 FWAFYSRDGLWFDSGNNWHGLWFNARD 518
>gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
Length = 560
Score = 40.1 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 11/113 (9%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTR--INATQGLVTLTLTPLKGRS 55
A + + + ++ DE + +F + + T V + TP
Sbjct: 155 AASTSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNH 214
Query: 56 PIIEHYLSASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
+ + + ++ P + + +++ I + + E
Sbjct: 215 FYKLWVDAQKGRNGYAWSEVHWSKVPGRDAKWKEQTIANTSERQFTQEFDCEF 267
>gi|149203834|ref|ZP_01880803.1| Putative large terminase [Roseovarius sp. TM1035]
gi|149142951|gb|EDM30993.1| Putative large terminase [Roseovarius sp. TM1035]
Length = 419
Score = 40.1 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 49/257 (19%), Gaps = 24/257 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + + T + +
Sbjct: 116 DPEGLRGPQFDGAWVDELAKWKRARETWDMLQFGLRLGEAPRVCVTTTPR---NVGVLKD 172
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGE-----PILGSGRIF 115
++ H E + Y G
Sbjct: 173 ILATPSTVTSSAPTEANRAHLAESFLDEVRARYAGTRLGRQELDGLLIDEAEDALWSPAM 232
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCRE 171
+ D V + YV+ +
Sbjct: 233 LEAARVDTLPEFDRVVVAVDPPVSGHAASDECGIIVVGAITRGPVQDWRAYVLADASVSA 292
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNG 231
+P A+ W + + + G L Q RQ ++P S G
Sbjct: 293 ASPARWARAVIR----ARELWGAERVVAEVNQGGDLVEQVIRQVDPLVPLRK--VHASRG 346
Query: 232 VEAGISDMLDRMRSGRW 248
A + GR
Sbjct: 347 KVARAEPVAALYEQGRV 363
>gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
Length = 560
Score = 40.1 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 11/113 (9%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE-----DVYFEGLTR--INATQGLVTLTLTPLKGRS 55
A + + + ++ DE + +F + + T V + TP
Sbjct: 155 AASTSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNH 214
Query: 56 PIIEHYLSASSSDRQVI-RMTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
+ + + ++ P + + +++ I + + E
Sbjct: 215 FYKLWVDAQKGRNGYAWNEVHWSKVPGRDAKWKEQTIANTSERQFTQEFDCEF 267
>gi|265753755|ref|ZP_06089110.1| terminase [Bacteroides sp. 3_1_33FAA]
gi|263235469|gb|EEZ20993.1| terminase [Bacteroides sp. 3_1_33FAA]
Length = 521
Score = 39.8 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 22/180 (12%), Positives = 49/180 (27%), Gaps = 22/180 (12%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQ----GLVTLTLTPLKGRSPII 58
++ R++W+ + + DE E + + TR G TL P +
Sbjct: 98 DKMREQWKGKQIDAICIDEITEMSWEAFSYVQTRNRGRSKTFTGKFFGTLNPKRSHWTRK 157
Query: 59 EHYLSASSSD------------RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
V T+++ + +E + + AR G+
Sbjct: 158 FLDWYIGVDGFIMSDRNGKVRYFYVNGSTVDDVVWGDSKEEVYAKCKIDIDRKLARIGGD 217
Query: 107 PI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGH---LVWNRDSDVIY 162
+ F + + N + + IG + A + + +
Sbjct: 218 FDYTNMIKSFVFYQGKLSENRAMLENNPNYIGSVAASGGKMAQAIIEGNFNVDPEENEKI 277
>gi|150005360|ref|YP_001300104.1| putative terminase [Bacteroides vulgatus ATCC 8482]
gi|149933784|gb|ABR40482.1| putative terminase [Bacteroides vulgatus ATCC 8482]
Length = 672
Score = 39.8 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 23/293 (7%), Positives = 55/293 (18%), Gaps = 83/293 (28%)
Query: 7 GRDKWQSNT-VHYVWFDEEPPED--VYFEGLTRINATQGL-VTLTLTPLKGRSPIIEHYL 62
+K + V+ +E + + + R+ G + + P+K I +
Sbjct: 110 DSEKIKGLENYKRVFLEEFSDFEHGDFKQIRKRLRGKHGQQIICSFNPIKITHWIKKEIF 169
Query: 63 S---------------------------------------------ASSSDRQVIRMTIN 77
D +I+ T
Sbjct: 170 DKDKWHDIPMEVTLGGKRIPEELTTVKSLRMNEPKQIMNVRTKEIVEHPGDTVLIQSTYL 229
Query: 78 ETP-----------HYNEQERKRIIDS--YPLHEREARTKGEPILGSGRIFPI--VEEDI 122
+Y+EQ GE + +
Sbjct: 230 NNFWVVGSPDGTYGYYDEQCVADFEKDRINDPDYYNVYALGEWGVIRTGSEFFGSFKRGQ 289
Query: 123 VINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD-VIYVVKN--YRCREQTPIFHVA 179
+D + + + + I+ T
Sbjct: 290 HSGERPYNPSLPVHLSVDNNVLPFISISYWQVDFTTGIKIWQFHETCAESPNNTVRKSSK 349
Query: 180 ALKSWGKWLPWAWPHDGLQHDKRSGEQ--------------LSAQYRRQGMKM 218
+ + K + + H S + + +G +
Sbjct: 350 LVAKYLKSIR--YCDKLFVHGDASTKSANTFDDEKRSWMDLFIETLKNEGFDI 400
>gi|302767642|ref|XP_002967241.1| hypothetical protein SELMODRAFT_86492 [Selaginella moellendorffii]
gi|300165232|gb|EFJ31840.1| hypothetical protein SELMODRAFT_86492 [Selaginella moellendorffii]
Length = 475
Score = 39.8 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 21/198 (10%), Positives = 52/198 (26%), Gaps = 15/198 (7%)
Query: 39 ATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE 98
+ + + G S + + + + P + ++D +
Sbjct: 116 DKESRLLYSENTAPGASRPRKMFRHIPQA-----PERTLDAPEILDDYYLNLLDWGSNNV 170
Query: 99 REARTK---GEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+G I +++ + + + G +
Sbjct: 171 VAVALGHTVYLWNASTGNIEELMQANEEDGPVTSVAWAPDGKHISVGLSNADVQLW---- 226
Query: 156 RDSDVIYVVKNYRCREQTPIFHVAA--LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213
DS + V++ + + S G + HD + +G+ ++ Q
Sbjct: 227 -DSLSLRQVRSLKAHSARVGSLAWNGPILSTGGRDNVIFNHDVRIREHVTGKMVAHQQEV 285
Query: 214 QGMKMLPECATFDDGSNG 231
G+K P G N
Sbjct: 286 CGLKWSPSGQQLASGGND 303
>gi|119385627|ref|YP_916682.1| hypothetical protein Pden_2902 [Paracoccus denitrificans PD1222]
gi|119376222|gb|ABL70986.1| protein of unknown function DUF264 [Paracoccus denitrificans
PD1222]
Length = 463
Score = 39.8 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 27/256 (10%), Positives = 58/256 (22%), Gaps = 25/256 (9%)
Query: 8 RDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + W DE + + + + + T K +
Sbjct: 162 PEALRGPQFDAAWVDELAKWKKAEECWDMLQFALRLGEHPQQVVTTTPK---NVAVLKRL 218
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG-EPILGSGRIFPIVEE 120
S + Y + + + R +G G ++
Sbjct: 219 LRQSSTVTTHAPTDANRAYLAESFLAEVQARYGGTRLGRQELEGLLLEDVEGALWSAGLL 278
Query: 121 DIVINSLDIPEHWVQ----IGGMDFGWHHPFAAGHLVWNRDSD----VIYVVKNYRCREQ 172
+ + + YV+++ R
Sbjct: 279 ERCRVEAAPALSRIVVAVDPAVTGGAAADECGIVVAGVVSEGPVTQWRAYVLEDASVRGG 338
Query: 173 TPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGV 232
+ AA+ + G+ + L + G L RQ ++P A G+
Sbjct: 339 PLDWARAAIAAMGRH-----GAERLVAEVNQGGDLVESVIRQVDPLVPFRALRAGRGKGL 393
Query: 233 EAGISDMLDRMRSGRW 248
A + GR
Sbjct: 394 RA--EPVAALYEQGRV 407
>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
Length = 663
Score = 39.8 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 70/261 (26%), Gaps = 32/261 (12%)
Query: 19 VWFDEEPPED--VYFEGLTRINATQGLVTLTL--TPLKGR-SPIIEHYLSASSSDRQVIR 73
VW DE D V + +T T G + +
Sbjct: 310 VWVDEASGVDDAVLDVAFGALTHEDNRAVMTSQPTRNAGMFYETHHKLSHRAGGVWIALT 369
Query: 74 MTINETPHYNEQERKRIID---SYPLHEREARTKGEPILGSGRIFPIVEEDIVIN----- 125
E+P +EQ + S + + R GE S + +
Sbjct: 370 FNGEESPLVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASI 429
Query: 126 SLDIPEHWVQIGGMDFGWHHPFAAGHL-------VWNRDSDVIYVVKN-YRCREQTPIFH 177
D +V + G + + W + + VV +
Sbjct: 430 FDDHQFGYVITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILEL 489
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP--------ECATFDDGS 229
A + P + + D +G+ L ++QG+ +P + +
Sbjct: 490 FAKINELLLQYP---NANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFT 546
Query: 230 NGVEAGISDMLDRMRSGRWKV 250
N + + SGR+K+
Sbjct: 547 NKRSLAYVGLQRAIASGRFKI 567
>gi|114707517|ref|ZP_01440413.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506]
gi|114537076|gb|EAU40204.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506]
Length = 448
Score = 39.8 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 30/261 (11%), Positives = 54/261 (20%), Gaps = 28/261 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE PE+ + + + + L T + +
Sbjct: 154 DPDSIRGYQFDAAWGDELGKWVKPEESFDNLMLALRLGERPRALFTTTPR---NVPILKR 210
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEP-----ILGSGRIF 115
+ V RM E + + + Y GE R
Sbjct: 211 LMADPQTAVTRMRTAENVENLAPGFLEAMARRYDGTRFGRQELDGELLDDRKDGLFERAL 270
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC--REQT 173
L V + + + + R R +
Sbjct: 271 VERSRVTNAPPLKRIVVAVDPPATSTKRSDACGIVAAGKDGEGAIYVLADESRRAVRPEK 330
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
AL + + G+ + A R + G
Sbjct: 331 WARCAVALLERLEADRIVAEV------NQGGDMVEAVLRTVAPNVPYRAVRATRGKWTRA 384
Query: 234 AGISDMLDRMRSGRWK---VF 251
+ GR + VF
Sbjct: 385 ---EPVAALYEQGRVRHVGVF 402
>gi|163785789|ref|ZP_02180283.1| Phage protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159878943|gb|EDP72953.1| Phage protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 166
Score = 39.8 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS 203
A + + D+ + YV+ Y + F ++ + + P + +
Sbjct: 6 GDYSAIVTVAKDFDTGIYYVLDAYGEKISDLKFANKIIEKYLIYKPRKIIFESQVFQELY 65
Query: 204 GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWK 249
+ + +QG+ + + E I + + +G K
Sbjct: 66 KNTIMREASKQGIHL---PIKPIKSTIQKEVRIQKLSPLIENGLIK 108
>gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756]
gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756]
Length = 445
Score = 39.4 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 27/248 (10%), Positives = 53/248 (21%), Gaps = 15/248 (6%)
Query: 7 GRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + H W DE P D + + T K +
Sbjct: 156 DPDSLRGPQFHAAWADEFCAWPKPGDTLAMLRFGLRLGADPRLVVTTTPKPHRALKVLM- 214
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEE 120
+ + R + + + + Y G + G +F +
Sbjct: 215 --AEPGVSLTRAGTSANAGNLAPAFLRTLESLYGGTRLAAQELDGVIVETDGGLFRAEDL 272
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
+ V + A G +V R D +V+ + R +P A
Sbjct: 273 ARCRAARPARLDRVVVAVDPPATAGGDACGIVVVGRRDDRAFVLADETARGLSPAGWAAR 332
Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDML 240
+ + + + + G +
Sbjct: 333 AVAAARAWSADALVAEANQGGDMVRSV---LAQADPPCRVKLVRASVGKRARA---EPVA 386
Query: 241 DRMRSGRW 248
GR
Sbjct: 387 ALYEQGRV 394
>gi|307319529|ref|ZP_07598956.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
gi|306894901|gb|EFN25660.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
Length = 419
Score = 39.4 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 29/142 (20%)
Query: 9 DKWQSNTVHYVWFDE--EPPEDVYFEGLTRINAT----------------QGLVTLTLTP 50
+K ++F+E + P ++R+ P
Sbjct: 91 EKILGQEYATLYFNESSQIPWASVETAMSRLAQKCELAPAIAAATGRRYLALKAYFDCNP 150
Query: 51 LKGRSPIIEHYLSASSS----------DRQVIRMTINETPHYNEQERKRIIDSYPLHERE 100
+ + + D +++ + E ++ S +R
Sbjct: 151 PSKLHWSFQMFRAKMKPGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASMSAAKRL 210
Query: 101 ARTKGEPIL-GSGRIFPIVEED 121
GE SG ++ + +
Sbjct: 211 RFEAGEWASEVSGALWALEDRK 232
>gi|56697127|ref|YP_167490.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3]
gi|56678864|gb|AAV95530.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3]
Length = 408
Score = 39.4 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 24/108 (22%), Gaps = 11/108 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIE 59
Q + + W DE + + + + V +T TP +
Sbjct: 103 AQDPEGLRGPQFDAAWVDELAKWKKAGETWDMLQFALRLGERPQVCVTTTP----RNVKL 158
Query: 60 HYLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG 105
++ + E + + Y G
Sbjct: 159 LKDLLAAPSTVQTHAPTEANRANLAESFLEEVRARYAGTRLGRQELDG 206
>gi|325292327|ref|YP_004278191.1| large terminase phage packaging protein [Agrobacterium sp. H13-3]
gi|325060180|gb|ADY63871.1| large terminase phage packaging protein [Agrobacterium sp. H13-3]
Length = 419
Score = 39.4 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 49/180 (27%), Gaps = 12/180 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE----PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + H W DE P++ + + + L T + +
Sbjct: 125 DPESLRGPQFHMAWADELGKWKYPQETWDMLQFGLRLGEAPRQLVTTTPRPIPLLKAL-- 182
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGE-PILGSGRIFPIVE 119
+ +V +M + + K + D Y GE G ++ +
Sbjct: 183 -LADPSSRVAKMPTAMNAQNLSPGFLKAMHDRYGGTRLGRQEIGGELIDEREGALWKRAD 241
Query: 120 -EDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRD-SDVIYVVKNYRCREQTPIFH 177
E IV + V G G + S + V+ + +TP
Sbjct: 242 LEAIVETDHEPLARIVVAVDPPAGIGENSCCGIVAAGLGISGKLVVLADCSVEGETPAGW 301
>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 39.0 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 10/147 (6%)
Query: 5 EQGRDKWQSNTVHYV--WFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
D Q ++ DE + ++ L ++ + + P + +
Sbjct: 128 ASTPDALQGFHAEHMLYIIDEASGVEDKIFEPVLGALSTPGAKLLMCGNPTQLSGFFYDS 187
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSY--PLHEREARTKGEPILGSGRIF--- 115
+ + + +++ + II+ Y R G+ L I+
Sbjct: 188 HNKN-REQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVRVAGDFPLAEDDIYIPL 246
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFG 142
P+VE+ I + G D
Sbjct: 247 PLVEKSIATEYFPRRHPQIIHIGCDVA 273
>gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2]
Length = 249
Score = 39.0 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 11 WQSNT-VHYVWFDEEPPEDV-YFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSD 68
+ V + DE D F + + A+ G + TP R E + +
Sbjct: 125 IRGFAGVKLLILDEASRVDDDVFASVLPMVASDGQMVALSTPWGRRGWFHELHQETRN-G 183
Query: 69 RQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEP 107
+ ++T+ E+ Y + S + E
Sbjct: 184 WERHKVTVYESDQYTPPRIAEVKASLGSFVFSSDYLCEF 222
>gi|295106980|emb|CBL04523.1| Phage terminase-like protein, large subunit [Gordonibacter
pamelaeae 7-10-1-b]
Length = 440
Score = 39.0 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 20/211 (9%), Positives = 45/211 (21%), Gaps = 28/211 (13%)
Query: 12 QSNTVHYVWFDEEPPEDVYFE---GLTRINATQGLVTLTLTPLKGRSP------------ 56
+ + FDE D + + TP SP
Sbjct: 117 RGQHGDLLIFDEAQELDDTQQSSFLFAISASPNPQTIYAGTPPDEDSPGTVFKRIRAAAL 176
Query: 57 -------IIEHYLSASSS----DRQVIRMT-INETPHYNEQERKRIIDSYPLHEREARTK 104
+ + DR++ T + + I+ +
Sbjct: 177 GGRTRTTSWDEWSVPEIPEDPRDRRIWAATNPSLGITIQPSTIETEIEQMDAAKLARERF 236
Query: 105 GEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV 164
G +G + ++ + D P G+ F + +V
Sbjct: 237 GWWAPDTGVERVVDADEWAMLETDEPPEGKVAFGVKFSIDGKTVSVSAAVKPKEGPCHVE 296
Query: 165 KNYRCR-EQTPIFHVAALKSWGKWLPWAWPH 194
+ + L++ +
Sbjct: 297 LVHCASTGSGTRWLADWLRARRSGIAVVVID 327
>gi|84503393|ref|ZP_01001462.1| Putative large terminase [Oceanicola batsensis HTCC2597]
gi|84388303|gb|EAQ01254.1| Putative large terminase [Oceanicola batsensis HTCC2597]
Length = 460
Score = 39.0 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 28/263 (10%), Positives = 52/263 (19%), Gaps = 26/263 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSP 56
A+E + + W DE D + + T +
Sbjct: 153 FSAHE--PEGLRGPQFDGAWADELGKWRRGRDSWDMLQFALRLGDAPRVCVTTTPR---N 207
Query: 57 IIEHYLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLH-EREARTKGEP-ILGSGR 113
+ + + + Y G G
Sbjct: 208 VGVLKDLLEMDSTVTTHAPTEANRANLADSFLAEVRARYAGTGLGRQELDGVMLDAAEGA 267
Query: 114 IFP----IVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVW----NRDSDVIYVVK 165
++ LD V + YV++
Sbjct: 268 LWTPAMLEAGRVEAPPDLDRIVVAVDPPVTGHAGSDECGIVVAGIVSRGDPGDWKAYVLE 327
Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
+ TP+ A + D + + G L RQ ++P
Sbjct: 328 DATVHAATPVQWAEAAIAALHRHGG----DRIVAEVNQGGDLVEAVMRQVDPLVPLKK-- 381
Query: 226 DDGSNGVEAGISDMLDRMRSGRW 248
+ G A + GR
Sbjct: 382 VHAARGKAARAEPVAALYEQGRV 404
>gi|220702377|pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17
Length = 592
Score = 39.0 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ ++ D + I++ + + T G +
Sbjct: 261 AYASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 320
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 321 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 373
Query: 119 EEDI 122
++
Sbjct: 374 RQEH 377
>gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
Length = 438
Score = 38.6 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 26/254 (10%), Positives = 58/254 (22%), Gaps = 24/254 (9%)
Query: 8 RDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
+ + + W DE + + + L T + ++ +
Sbjct: 141 AESLRGPQFSHGWADEIAKWAGGQAAWDNLMMGMRLGIAPRVLATTTPRPV-ALVRGLVE 199
Query: 64 ASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGE-PILGSGRIFPIVEE 120
+ SD V R + H + + +Y GE G ++
Sbjct: 200 RNGSDVVVTRGRSADNASHLADGFLAAMERNYGGTRLGRQELDGELIEEVEGALWSRDLL 259
Query: 121 DIVINSLDIPEHWVQIGGMD---FGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ + + +D + D + TP
Sbjct: 260 ERCRVAHVRGTLARVVVAVDPPASVHGDACGIVVVGLGGDGRAYVIADA-TVEGATPEGW 318
Query: 178 VAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ---YRRQGMKMLPECATFDDGSNGVEA 234
A D + + +G + G+ + A+ A
Sbjct: 319 ARA----VAAAALVHGADRVVAEANNGGAMVESVLRAAEAGLPVRLVHASRGK-----VA 369
Query: 235 GISDMLDRMRSGRW 248
+ +GR
Sbjct: 370 RAEPVAALYEAGRV 383
>gi|158422729|ref|YP_001524021.1| hypothetical protein AZC_1105 [Azorhizobium caulinodans ORS 571]
gi|158329618|dbj|BAF87103.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 436
Score = 38.6 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 15/191 (7%), Positives = 42/191 (21%), Gaps = 18/191 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE V+ + + T + + +
Sbjct: 140 DPESLRGPQFEAAWLDELAKWRRAEAVFDMLQFGLRLGAQPRQMVTTTPRPSALLRRLM- 198
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEE 120
+ + R T + H ++ Y +GE + R +
Sbjct: 199 --ADPSTVLSRATTAQNAFHLAPAFLDTVLARYGGTRLGRQELEGE--IIEDRPDALWTR 254
Query: 121 DIVINSLDIPEHWVQIGGMDF-------GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ + + + + + + V + +
Sbjct: 255 SALEAAREAAAPPLARVVVALDPPASSRAGADACGIIAAGIDGEGLVHVLADATAAGLRP 314
Query: 174 PIFHVAALKSW 184
+ A+ W
Sbjct: 315 AQWAARAIDLW 325
>gi|159184549|ref|NP_353972.2| large terminase phage packaging protein [Agrobacterium tumefaciens
str. C58]
gi|159139855|gb|AAK86757.2| large terminase phage packaging protein [Agrobacterium tumefaciens
str. C58]
Length = 402
Score = 38.6 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 12/184 (6%)
Query: 7 GRDKWQSNTVHYVWFDEE----PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + H W DE P++ + + + L T + +
Sbjct: 108 DPESLRGPQFHLAWSDELGKWKYPQETWDMLQFGLRLGEMPRQLVTTTPRPIPLLKAL-- 165
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGE-PILGSGRIFPIVE 119
S +V RM + + K + + Y GE G ++ +
Sbjct: 166 -LSDPTSRVARMPTAMNAQNLSPGFLKAMQERYGGTRLGRQEIGGELIDEREGALWKRAD 224
Query: 120 ED--IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFH 177
+ I + V + + + S + V+ + +TP
Sbjct: 225 LEAIIEAAHEPLSRIVVAVDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGW 284
Query: 178 VAAL 181
A+
Sbjct: 285 ARAV 288
>gi|302754122|ref|XP_002960485.1| hypothetical protein SELMODRAFT_229944 [Selaginella moellendorffii]
gi|300171424|gb|EFJ38024.1| hypothetical protein SELMODRAFT_229944 [Selaginella moellendorffii]
Length = 432
Score = 38.6 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 21/198 (10%), Positives = 52/198 (26%), Gaps = 15/198 (7%)
Query: 39 ATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE 98
+ + + G S + + + + P + ++D +
Sbjct: 73 DKESSLLYSENTAPGASRPRKMFRHIPQA-----PERTLDAPEILDDYYLNLLDWGSNNV 127
Query: 99 REARTK---GEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN 155
+G I +++ + + + G +
Sbjct: 128 VAVALGHTVYLWNASTGNIEELMQANEEDGPVTSVAWAPDGKHISVGLSNADVQLW---- 183
Query: 156 RDSDVIYVVKNYRCREQTPIFHVAA--LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213
DS + V++ + + S G + HD + +G+ ++ Q
Sbjct: 184 -DSLSLRQVRSLKAHSARVGSLAWNGPILSTGGRDNVIFNHDVRIREHVTGKMVAHQQEV 242
Query: 214 QGMKMLPECATFDDGSNG 231
G+K P G N
Sbjct: 243 CGLKWSPSGQQLASGGND 260
>gi|163742707|ref|ZP_02150092.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
gi|161383962|gb|EDQ08346.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
Length = 417
Score = 38.6 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 54/267 (20%), Gaps = 42/267 (15%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGL--TRINATQGLVTLTLTPLKGRSPIIEH 60
+ + W DE D + R+ V +T TP +
Sbjct: 114 DPEALRGPQFDAAWADELAKWKRGQDSWDMLQFALRLGDDP-RVCVTTTP----RNVGVL 168
Query: 61 YLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG---------EPIL 109
+S + + + Y G
Sbjct: 169 RELLASPSTVQTHAATEANRANLAASFLAEVRNRYAGSRLGRQELDGILLQDIEGALWTN 228
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVK 165
I + +LD V + YV+
Sbjct: 229 AGLVAAQIAK----APTLDRVVVAVDPAVSAGKHSDACGIVVVGATLQGPPQDWCAYVLA 284
Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ---GMKMLPEC 222
+ + P+ A + D + + G L RQ +
Sbjct: 285 DCTVQGVGPLTWAQA----AIDARDRYGADRVVAEVNQGGALVESLLRQIDPLVPFTALH 340
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRWK 249
A+ G+ + GR +
Sbjct: 341 ASRGKGARA-----EPVAALYEQGRVR 362
>gi|149913871|ref|ZP_01902403.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
gi|149812155|gb|EDM71986.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
Length = 419
Score = 38.6 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 30/264 (11%), Positives = 56/264 (21%), Gaps = 28/264 (10%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSP 56
A+E + + W DE D + + T +
Sbjct: 112 FSAHE--PEALRGPQFDGAWVDEMAKWKKARDTWDMLQFGLRLGDHPQVCITTTPR---N 166
Query: 57 IIEHYLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGSGRI 114
+ V + + + Y G + +
Sbjct: 167 VGVLKDLLEQKSTVVTSAPTEANRAFLAQSFLEEVRARYAGTRLGRQELDGVLLSEAEGA 226
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDF------GWHHPFAAGHLVWNR----DSDVIYVV 164
++PE + +D G R D +
Sbjct: 227 LWTNSGIEACRVDNLPELDRIVVAIDPPVTGRAGSDECGIVVAGAVTRGPVQDWRAYVLA 286
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
+ + AA+ + W D L + G + AQ RQ ++P
Sbjct: 287 DCSVGAARPLSWANAAISAMEH-----WGADRLVAEVNQGGDMVAQVIRQVDPLVP--VK 339
Query: 225 FDDGSNGVEAGISDMLDRMRSGRW 248
G + GR
Sbjct: 340 SVHARRGKVTRAEPVAALYEQGRV 363
>gi|145579924|pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp
gi|145579925|pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp
gi|145579926|pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant
Length = 385
Score = 38.6 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 3 AYEQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
AY D + N+ ++ ++ D + I++ + + T G +
Sbjct: 261 AYASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFY 320
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV 118
+ + +A T + + + +G
Sbjct: 321 DIWTAAVEGKSGFEPYTAIWNS-------VKERLYNDEDIFDDGWQWSIQTINGSSLAQF 373
Query: 119 EEDI 122
++
Sbjct: 374 RQEH 377
>gi|289641233|ref|ZP_06473400.1| protein of unknown function DUF323 [Frankia symbiont of Datisca
glomerata]
gi|289508995|gb|EFD29927.1| protein of unknown function DUF323 [Frankia symbiont of Datisca
glomerata]
Length = 504
Score = 38.6 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 3/87 (3%)
Query: 142 GWHHPFAAGHLVWNRDSDVIYVVKNYRCRE---QTPIFHVAALKSWGKWLPWAWPHDGLQ 198
G A ++ + V + H A ++ G W G
Sbjct: 222 GTDGDTAGTAWAYDNERPAYRVYVPAFFIGTLPVSNAAHAAFIEDGGYHDERLWSAAGWA 281
Query: 199 HDKRSGEQLSAQYRRQGMKMLPECATF 225
R+G +RR+G +
Sbjct: 282 WRCRAGLTAPQFWRREGGTWIRRRFGR 308
>gi|154247555|ref|YP_001418513.1| hypothetical protein Xaut_3628 [Xanthobacter autotrophicus Py2]
gi|154161640|gb|ABS68856.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 690
Score = 38.6 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 25/219 (11%), Positives = 51/219 (23%), Gaps = 33/219 (15%)
Query: 19 VWFDE--EPPEDVYFEGLTRI--NATQG--LVTLTLTPLKGRSPIIEHYL---------S 63
++F+E + P TR+ L P ++
Sbjct: 384 LYFNECSQIPYSSILVARTRLAQVVPGLMQRALYDLNPAGTGHWTYREFIEGRDPISGAP 443
Query: 64 ASSSDRQVIRM--TINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEED 121
S+ D + + + + + + P +R G + ++
Sbjct: 444 LSAPDNFQHMFLNPGDNAKNLSPEFLRSLEAL-PEKQRRRFFDGMYVAEIDGALWTLDLI 502
Query: 122 IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN--YRCREQTPIFHVA 179
S I ++ + G AA +
Sbjct: 503 ERCRSEPIAPGDHRLRRIVIGVDPSGAA--------NKEDARSDEIGIVVAGMMDDGTAV 554
Query: 180 ALKSWGKWL-PWAWPH--DGLQHDKRSGEQLSAQYRRQG 215
L+ P W GL H + ++ R G
Sbjct: 555 ILEDGTVRDGPSGWGKVVAGLYHKWGADRVIAE--RNYG 591
>gi|283769248|ref|ZP_06342152.1| phage terminase, large subunit, PBSX family [Bulleidia extructa
W1219]
gi|283104224|gb|EFC05603.1| phage terminase, large subunit, PBSX family [Bulleidia extructa
W1219]
Length = 455
Score = 38.6 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 46/200 (23%)
Query: 13 SNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHY--------- 61
+ DE + E + R + +TL P P+ + Y
Sbjct: 124 GGQYGCLLIDEVNTANMEFVRESIMRAD----YTMMTLNPDDPSLPVYKEYINRCRPIQK 179
Query: 62 -------------LSASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGE 106
+ ++ +E+++ +II+S P + + KG
Sbjct: 180 WTKETPQEILNDLNEPEHPNWIHWFFNFDDNYGLSEEKKTQIIESVPVGTKLWKNKIKGL 239
Query: 107 PILGSGRIFPIVEED------------IVINSLDIPEHWVQIGGMDFGWHHPF----AAG 150
+G +F E I V G+D + A
Sbjct: 240 RGRATGLVFSNFERKTNVITYEQLIAQIGGKDKFRKAFKVFTVGIDTAYSQKSPDTIAML 299
Query: 151 HLVWNRDSDVIYVVKNYRCR 170
+ +I + +
Sbjct: 300 FQGITFNGKLITLDEEVYNN 319
>gi|163736656|ref|ZP_02144075.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
BS107]
gi|161390526|gb|EDQ14876.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
BS107]
Length = 430
Score = 38.6 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 54/267 (20%), Gaps = 42/267 (15%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGL--TRINATQGLVTLTLTPLKGRSPIIEH 60
+ + W DE D + R+ V +T TP +
Sbjct: 127 DPEALRGPQFDAAWADELAKWKRGQDSWDMLQFALRLGDDP-RVCVTTTP----RNVGVL 181
Query: 61 YLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG---------EPIL 109
+S + + + Y G
Sbjct: 182 RDLLASPSTVQTHAATEANRANLAASFIAEVRNRYAGSRLGRQELDGILLQDVEGALWTN 241
Query: 110 GSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSD----VIYVVK 165
I + +LD V + YV+
Sbjct: 242 AGLVAAQIAK----APTLDRVVVAVDPAVSAGKRSDACGIVVVGATLQGPPQDWCAYVLA 297
Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ---GMKMLPEC 222
+ + P+ A + D + + G L RQ +
Sbjct: 298 DCTVQGVGPLTWAQA----AIDARDRYGADRVVAEVNQGGALVESLLRQIDPLVPFTALH 353
Query: 223 ATFDDGSNGVEAGISDMLDRMRSGRWK 249
A+ G+ + GR +
Sbjct: 354 ASRGKGARA-----EPVAALYEQGRVR 375
>gi|313114059|ref|ZP_07799612.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623629|gb|EFQ07031.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 443
Score = 38.2 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 26/259 (10%), Positives = 50/259 (19%), Gaps = 35/259 (13%)
Query: 12 QSNTVHYVWFDEEPPEDV-----YFEGLTRINATQGLVTLTLTPLKG------------- 53
+ + FDE D + ++ TP
Sbjct: 126 RGQHGDLLIFDEAQELDETAQGSFLPAISASLNP--QTIYVGTPPGPDAVGTVFRALRKR 183
Query: 54 ---RSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRII-------DSYPLHEREART 103
+ S + ++ R+ + +
Sbjct: 184 ALDGEAKKAAWFEFSVPEIGDVKDPARWAATNPALGRRIQLSTIEGEAEQLDPDTFARER 243
Query: 104 KGEP--ILGSGRIFPIVEE-DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDV 160
G + + I S D G+ F
Sbjct: 244 LGWWSPEITEHLDYAIDRTAWEACASEDEKPEGKTAYGIKFSADGSAVCLCGAVIPKEGP 303
Query: 161 IYV-VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
V + R Q + L D E++ +R + +
Sbjct: 304 ARVSLLEMRPAGQGLTWLADWLNDRYGKASCVVIDGRNGVDV-LVERIKDTWRAKNSVIR 362
Query: 220 PECATFDDGSNGVEAGISD 238
P +G GIS+
Sbjct: 363 PSAKDVIAAVSGFTNGISE 381
>gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15]
gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
Length = 567
Score = 38.2 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 9/174 (5%)
Query: 7 GRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + H W DE P + + + + T K +
Sbjct: 278 DPESLRGPQFHAAWADEFCAWPKPAETLAMLRFGLRLGEDPRLVVTTTPKPHRALKTLM- 336
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILGSGRIFPIVEE 120
+ + R + R + S R G + G +F +
Sbjct: 337 --AEPGVALTRAGTSANAGNLAPAFLRTLASLYGGTRLAAQELDGVVVETDGGLFRAEDL 394
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ V + A G +V R D +V+ + R +P
Sbjct: 395 ARCRAARPARLDRVVVAVDPPATATGDACGIVVVGRRDDRAFVLADETARGLSP 448
>gi|312116003|ref|YP_004013599.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
17100]
gi|311221132|gb|ADP72500.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
17100]
Length = 466
Score = 38.2 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 53/258 (20%), Gaps = 26/258 (10%)
Query: 8 RDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLS 63
D+ + W DE + + + + T + II +L
Sbjct: 151 PDQLRGPQHDAAWCDELAKWRYARETWDMLQFGLRLGHDPRQIVTTTPRPI-AIIREFLG 209
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE---------PILGSG 112
+ R + + Q I R E
Sbjct: 210 KEGHGVVLTRGSTYDNRANLAQNYFNTIVRSYEGTRLGRQEINAELLDDVAGALWTRSLL 269
Query: 113 RIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHH--PFAAGHLVWNRDSDVIYVVKNYRCR 170
I + + D YV+ + R
Sbjct: 270 DQHRIARGTPLPRFDRVVVGIDPAARPSGAGDKTSETGIVVCGLGEDG-RGYVLDDLSNR 328
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+ + A+ + + D L + G + R LP A
Sbjct: 329 QGPMGWAQKAVAGFD-----LYEADALVVEINQGGAMVETVLRAVRGGLPIRAVRATRGK 383
Query: 231 GVEAGISDMLDRMRSGRW 248
V A + GR
Sbjct: 384 TVRA--EPIAALYAQGRV 399
>gi|301057075|gb|ADK54896.1| diaminobutyric acid synthase A [uncultured soil bacterium]
Length = 351
Score = 38.2 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 10/130 (7%)
Query: 73 RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
R T T ++ P R R G + + ++ + +
Sbjct: 179 RATTPHTRAIGVDTHHSVLFGQPDGHRSLRGLGNSLWPENLDHSVFDDVHWCTAGEAYAA 238
Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAW 192
++ G + P + Y+V + R V L G
Sbjct: 239 TRRLHGRHALYQGPTS----------GAAYLVAEWYARRNPGELCVVMLPDEGYRYQATA 288
Query: 193 PHDGLQHDKR 202
DG
Sbjct: 289 YDDGWLAANG 298
>gi|227530601|ref|ZP_03960650.1| possible phage terminase large subunit B [Lactobacillus vaginalis
ATCC 49540]
gi|227349489|gb|EEJ39780.1| possible phage terminase large subunit B [Lactobacillus vaginalis
ATCC 49540]
Length = 193
Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTP 50
++G + + T + +E E V+ E L R + + P
Sbjct: 146 DRGVNNIRGMTAMGAYINECSLATESVFQEILQRCSFKGSRIICDTNP 193
>gi|75675353|ref|YP_317774.1| hypothetical protein Nwi_1160 [Nitrobacter winogradskyi Nb-255]
gi|74420223|gb|ABA04422.1| Protein of unknown function DUF264 [Nitrobacter winogradskyi
Nb-255]
Length = 422
Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 25/254 (9%), Positives = 47/254 (18%), Gaps = 21/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + L T + + +
Sbjct: 127 DPESLRGPQFGCAWSDEMAKWRYAEAAFDMLQFGLRLGSQPRQLITTTPRPTALLKRLMN 186
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-----PILGSGRIF 115
V R + + + R GE P R
Sbjct: 187 ---DPASVVTRAPTQANAFNLAPTFLQGVMARYAGTRLGRQELDGEIIEDRPDALWSRAL 243
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
L V D V +
Sbjct: 244 LERCRVSEAPPLQRIVVAVDPPASVTRRADACGIVAAGQAADGTVYVIADETVAGVTPAQ 303
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A+ W +W A + Q ++ + ++ AT
Sbjct: 304 WAAKAIALWRRWEADALVAEVNQGGDMVKAVIAEV--DASVPVIAVRATRGKWLRA---- 357
Query: 236 ISDMLDRMRSGRWK 249
+ GR +
Sbjct: 358 -EPVATLYEQGRVR 370
>gi|92116961|ref|YP_576690.1| hypothetical protein Nham_1408 [Nitrobacter hamburgensis X14]
gi|91799855|gb|ABE62230.1| protein of unknown function DUF264 [Nitrobacter hamburgensis X14]
Length = 422
Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 23/254 (9%), Positives = 45/254 (17%), Gaps = 21/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + L T + + +
Sbjct: 127 DPESLRGPQFGCAWSDEMAKWRYAEAAFDMLQFGLRLGSQPRQLITTTPRPTALLKRLM- 185
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-----PILGSGRIF 115
+ V R + + + R GE P R
Sbjct: 186 --ADPASVVSRAPTQANAFNLAPTFLQGVMARYAGTRLGRQELDGEIIEDRPDALWSRAL 243
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
L V V + +
Sbjct: 244 LERCRVHEAPPLQRIVVAVDPPATSSKRADACGIVAAGLAEGGMVYVIADETVAGVTPAL 303
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A+ W A + + + ++P AT
Sbjct: 304 WAAKAIALW--RRCEADALVAEVNQGGDMVKAVIAEVDAAVPVIPVRATRGKWLRA---- 357
Query: 236 ISDMLDRMRSGRWK 249
+ GR +
Sbjct: 358 -EPVATLYEQGRVR 370
>gi|22536761|ref|NP_687612.1| hypothetical protein SAG0585 [Streptococcus agalactiae 2603V/R]
gi|22533605|gb|AAM99484.1|AE014218_1 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
Length = 471
Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 68/257 (26%), Gaps = 40/257 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTR---INATQGLVTLTLTPLK----------------- 52
+ DE E + ++ + + TP
Sbjct: 158 GEGFDLLIIDEAQEYTAEQESALKYTVTDSDNPMTIMCGTPPTMVSTGTVFESYRKECLK 217
Query: 53 ------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
G + + + + H NE++ + + + R
Sbjct: 218 GDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAELGEDEIDHNIQRLGYW 277
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P + E + G+ FG + + + ++V +
Sbjct: 278 PSFNQKSVISEKEWAKLKVEQVPELKSKLFVGIKFGQDGNNVSLSIAARASENKVFVEAI 337
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQYRRQGMK--MLPE 221
R T + + LKS + D SG++ L+ + R G+K LP+
Sbjct: 338 DCLSVRNGT-QWIINFLKS--------ADIAKVVVDGASGQELLAQEMREHGLKKPELPK 388
Query: 222 CATFDDGSNGVEAGISD 238
A + E GI
Sbjct: 389 VAEIITANTMWEQGIMQ 405
>gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2]
gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 416
Score = 37.8 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 15/186 (8%), Positives = 38/186 (20%), Gaps = 14/186 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + T + + +
Sbjct: 120 DPESLRGPQFAAAWLDELAKWKRAEATFDMLQFGLRLGAQPRQMVTTTPRPTALLRRL-- 177
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVEE 120
+ V R + H +++ Y GE I
Sbjct: 178 -LADPSTAVTRARTADNAFHLAPSFLGQVLTRYGGTRLGRQELDGELIEDRADALFSRPA 236
Query: 121 DIVINSLDIPEHWVQIGGMDF-----GWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ +P + +D + V + + +
Sbjct: 237 LEALREAQVPPLTRIVVAVDPPASSRAGADACGIVCAGMDATGVVHVLADDSAAGLRPAQ 296
Query: 176 FHVAAL 181
+ A+
Sbjct: 297 WAAKAV 302
>gi|320353673|ref|YP_004195012.1| glycoside hydrolase family 3 domain-containing protein
[Desulfobulbus propionicus DSM 2032]
gi|320122175|gb|ADW17721.1| glycoside hydrolase family 3 domain protein [Desulfobulbus
propionicus DSM 2032]
Length = 354
Score = 37.8 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 172 QTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQ---GMKMLPECATFDDG 228
+ L+ + + D +G + +R G+ +L
Sbjct: 242 LSASVIDELLRRELGFDGVVFSDDLQMRAISNGWSTAEAVQRAVLAGVDVLVIGNNLTPR 301
Query: 229 SNGVEAGISDMLDRMRSGRW 248
+ AG+ + + SGR
Sbjct: 302 DDAFRAGVDAIEQLLDSGRI 321
>gi|195064815|ref|XP_001996643.1| GH22518 [Drosophila grimshawi]
gi|193895421|gb|EDV94287.1| GH22518 [Drosophila grimshawi]
Length = 528
Score = 37.8 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 10/195 (5%)
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG-RI 114
E+ ++ + +E NE++ + +S E +G+ + R
Sbjct: 287 EYKEYQDKLEKQKQEYKKEHPDEAHKDNEEDWEEFYESENQRELRQIWQGQSQIAEHLRE 346
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP-----FAAGHLVWNRDSDVIYVVKNYRC 169
++I+ + + + G P A + V
Sbjct: 347 LSRKADEILGRQENTLSLVSRGMAANAGQALPPPAAGSAPVQQLAGGIGVTRQDVDLLIA 406
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+ + + ++ + D +Q ++++ AQ + G + A DG
Sbjct: 407 NQNILLSTIREIRQLAGDI--NVRTDNIQINQKNAPT--AQIQSSGYDVQTLIAEMRDGM 462
Query: 230 NGVEAGISDMLDRMR 244
N V+ GIS + R+
Sbjct: 463 NQVKQGISHVGQRLG 477
>gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10]
gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10]
Length = 450
Score = 37.8 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 24/107 (22%), Gaps = 7/107 (6%)
Query: 7 GRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE--H 60
D + Y W DE P+ V + L T + +
Sbjct: 147 DADGLRGPQFDYAWGDEFAAWPDPQRVLDTLRMGVRLGGAPRILLTTTPRPIPALKALVK 206
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER-EARTKGE 106
R + T + + + +Y +G
Sbjct: 207 AWDPRGPIRVTHQPTAANAANLAPGFVEALNAAYGGSMLGRQEVEGL 253
>gi|15828322|ref|NP_302585.1| lipoprotein [Mycobacterium leprae TN]
gi|221230799|ref|YP_002504215.1| putative lipoprotein [Mycobacterium leprae Br4923]
gi|13094015|emb|CAC31963.1| possible lipoprotein [Mycobacterium leprae]
gi|219933906|emb|CAR72545.1| possible lipoprotein [Mycobacterium leprae Br4923]
Length = 441
Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 36/155 (23%), Gaps = 12/155 (7%)
Query: 4 YEQGRDKWQSNTVHYVWFD------EEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPI 57
E + Q T V D E + + P G S +
Sbjct: 253 AEVSSHRIQVVTDAGVIMDFPCSYGEADQARNVTRNGIHVVTEKYSDFYMSNPAAGYSNV 312
Query: 58 IEHYLSASSSDRQVIRMTINETPHYNEQERK----RIIDSYPLHEREARTKGEPILGSGR 113
E + S++ + I + + G+P+ +G
Sbjct: 313 YERWAVRISNNGEFIHANPASVGAQGNTNVTNGCINLSTGDAEQFYRSAIYGDPVEVTGS 372
Query: 114 IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFA 148
+ D + D W GM P
Sbjct: 373 SIQLSYSD--GDIWDWAVDWDTWVGMSALLSFPTV 405
>gi|294851955|ref|ZP_06792628.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
gi|294820544|gb|EFG37543.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
Length = 264
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 7 GRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINATQGLVTLTLTPLKG 53
D + W DE P++ + + + T +G
Sbjct: 123 DPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTPRG 173
>gi|76788305|ref|YP_329267.1| prophage LambdaSa03, terminase, large subunit, putative
[Streptococcus agalactiae A909]
gi|76563362|gb|ABA45946.1| prophage LambdaSa03, terminase, large subunit, putative
[Streptococcus agalactiae A909]
Length = 471
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 68/257 (26%), Gaps = 40/257 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTR---INATQGLVTLTLTPLK----------------- 52
+ DE E + ++ + + TP
Sbjct: 158 GEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTMVSTGTVFESYRKECLK 217
Query: 53 ------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
G + + + + H NE++ + + + R
Sbjct: 218 GDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAELGEDEIDHNIQRLGYW 277
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P + E + G+ FG + + + ++V +
Sbjct: 278 PSFNQKSVISEKEWAKLKVEQVPELKSKLFVGIKFGQDGNNVSLSIAARASENKVFVEAI 337
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQYRRQGMK--MLPE 221
R T + + LKS + D SG++ L+ + R G+K LP+
Sbjct: 338 DCLSIRNGT-QWIINFLKS--------ADIAKVVIDGASGQELLAQEMREHGLKKPELPK 388
Query: 222 CATFDDGSNGVEAGISD 238
A + E GI
Sbjct: 389 VAEIITANTMWEQGIMQ 405
>gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217]
gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217]
Length = 419
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 8/106 (7%), Positives = 18/106 (16%), Gaps = 9/106 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + T + +
Sbjct: 116 DPEALRGPQFDGAWVDELAKWKRARETWDMLQFGLRLGDAPRVCVTTTPR---NVGVLKD 172
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGE 106
+ V + E + Y G
Sbjct: 173 IVAVPSTVVTSAPTEANRAYLAESFLDEVRARYAGTRLGRQELDGL 218
>gi|261392574|emb|CAX50134.1| conserved hypothetical phage protein [Neisseria meningitidis 8013]
Length = 540
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 26/253 (10%), Positives = 55/253 (21%), Gaps = 26/253 (10%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTP----LKGRSPIIEHYLSASSSD 68
++ Y L R + +
Sbjct: 231 GQKYDVIYI---GTILHYDSVLNRTLNNPFWHGIKFKAMKRWPDRMDLWDRWEELFRNDG 287
Query: 69 RQVIRMTINETPHYNEQE------------RKRIIDSYPLHEREARTKGEPILGSGRIFP 116
V E+ +I ++ + +P+ G F
Sbjct: 288 ETVAEAFYLANKDEMERGAQTSWAARGVLALMKIRARDGHATFDSEYQNDPVSGEDAPFA 347
Query: 117 IVEEDIVINSLDIPEHW--VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ D+ G P A + R +YVV+ +
Sbjct: 348 KSMKFWNDLPSDLVYFGALDPSLGKAGASRDPSAIVIGGYQRSMGRLYVVEAQIKKRLPD 407
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQY-RRQGMKMLPECATFDDGSNGVE 233
+ + ++ W + E L + +R + +P A +
Sbjct: 408 LIIEDVICLHRQYRCKLW----FVETVQFQEFLKDELVKRSAARGIPVPARAVKPVSDKL 463
Query: 234 AGISDMLDRMRSG 246
I + M +G
Sbjct: 464 LRIETLQPHMANG 476
>gi|99080898|ref|YP_613052.1| hypothetical protein TM1040_1057 [Ruegeria sp. TM1040]
gi|99037178|gb|ABF63790.1| DNA packaging protein Gp17 (Terminase) [Ruegeria sp. TM1040]
Length = 425
Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 26/263 (9%), Positives = 52/263 (19%), Gaps = 32/263 (12%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIE 59
+ + W DE + + + T V +T TP +
Sbjct: 120 ASDPEVLRGPQFDAAWVDELAKWRRAQEAWDMLQFALRLGTAPRVCVTTTP----RNVPL 175
Query: 60 HYLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
S + + Y G +
Sbjct: 176 LKGLLQSPSTVTTHAPTEANSANLAPSFLSEVRARYAGSRLARQELDGVLLADVDGALWS 235
Query: 118 VEE--DIVINSLDIPEHWVQIGGM---DFGWHHPFAAGHLVWNRDSD----VIYVVKNYR 168
+ +I + V YV+ ++
Sbjct: 236 SDMLAEIQRRDTPRLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISSWRAYVLADHT 295
Query: 169 CREQTPIFHVAALKSWGKWLPWAWPHDGLQHD-KRSGEQLSAQYRRQG--MKMLPECATF 225
+ P A A+ D L + + G + R+ + P A+
Sbjct: 296 VQGLGPTGWARA----AIAARDAYKADRLVAEVNQGGALVGTVLRQVDPLVPFTPVHASK 351
Query: 226 DDGSNGVEAGISDMLDRMRSGRW 248
+ + GR
Sbjct: 352 GKAARA-----EPVAALYEQGRV 369
>gi|110680226|ref|YP_683233.1| hypothetical protein RD1_3034 [Roseobacter denitrificans OCh 114]
gi|109456342|gb|ABG32547.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 456
Score = 37.5 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 56/257 (21%), Gaps = 22/257 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGL--TRINATQGLVTLTLTPLKGRSPIIEH 60
+ + W DE D + R+ V +T TP +
Sbjct: 153 DPEGLRGPQFDAAWVDELAKWKKAQDTWDMLQFALRLGDKP-QVCVTTTP----RNVGVL 207
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG-EPILGSGRIFPI 117
S + + + R G G ++
Sbjct: 208 KTLMKSPSTVSSHAPTEANAANLARSFLEEVRARYAGTRLGRQELDGVLLEDAEGALWTT 267
Query: 118 VEEDIVINSLDIPEHWVQIG---GMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ + + + G + + + + + Y + T
Sbjct: 268 AGIEGIRCEQAPELDRIVVAVDPSTTSGANSDECGIIVAGVKMAGAPQDWRAYVLADCTV 327
Query: 175 IFHV-AALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQYRRQGMKMLPECATFDDGSNGV 232
A + D L + G Q ++ R+ + + G
Sbjct: 328 QGASPAGWAQAAIAAMERFGADRLVAEVNQGGQMVAEVLRQVDPLVPYKGVHASRGK--- 384
Query: 233 EAGISDMLDRMRSGRWK 249
A + GR +
Sbjct: 385 VARAEPVAALYEQGRVR 401
>gi|229815293|ref|ZP_04445628.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM
13280]
gi|229809073|gb|EEP44840.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM
13280]
Length = 474
Score = 37.5 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 64/268 (23%), Gaps = 40/268 (14%)
Query: 12 QSNTVHYVWFDEEPPEDVYFE-GLTRINATQG----LVTLTLTPLKG---RSPIIEHYLS 63
+ + + DE + L + TP + S
Sbjct: 152 RGKSFDVLIIDEAQELTDMQQAALLPAISAGKMHNPQTIYLGTPPGPKCLGTVFANLRKS 211
Query: 64 ASSSDRQVIRMTINETPHYNEQERKRIIDSYP-------------------LHEREARTK 104
D Q+ M T ++ +R R + P
Sbjct: 212 ILKGDSQMAWMEWGATEIGDKNDRARWYECNPSLGIVLELKAVESECNQMAPDTFARERL 271
Query: 105 GEPILGSGRIFPIVEEDIV--INSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIY 162
G + P + + G+ F AA Y
Sbjct: 272 GWWADDAEVANPALPPGLWAKREVRKAMAGGKLAFGVKFSTDGRTAAISWARAVRGGPSY 331
Query: 163 V--VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
V T L++ G+ + D +SG A +R G P
Sbjct: 332 VELYDVACTDGGTAGISDMLLRNKGE-------IAAVCIDGKSGA--DALIQRLGDNAFP 382
Query: 221 ECATFDDGSNGVEAGISDMLDRMRSGRW 248
+ A V+A S +LD ++ G
Sbjct: 383 KKAVITGSPAIVQAAASMLLDELKDGSL 410
>gi|325202148|gb|ADY97602.1| phage uncharacterized protein [Neisseria meningitidis M01-240149]
gi|325208098|gb|ADZ03550.1| conserved hypothetical protein, putative [Neisseria meningitidis
NZ-05/33]
Length = 540
Score = 37.5 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 26/253 (10%), Positives = 55/253 (21%), Gaps = 26/253 (10%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTP----LKGRSPIIEHYLSASSSD 68
++ Y L R + +
Sbjct: 231 GQKYDVIYI---GTILHYDSVLNRTLNNPFWRGVKFKAMKRWPDRMDLWDRWEELFRNDG 287
Query: 69 RQVIRMTINETPHYNEQE------------RKRIIDSYPLHEREARTKGEPILGSGRIFP 116
V E+ +I ++ + +P+ G F
Sbjct: 288 ETVAEAFYQANKDEMERGAVTSWAARGVLALMKIRARDGHATFDSEYQNDPVSGEDAPFA 347
Query: 117 IVEEDIVINSLDIPEHW--VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ D+ G P A + R +YVV+ +
Sbjct: 348 KSMKFWNDLPSDLVYFGALDPSLGKAGASRDPSAIVIGGYQRSMGRLYVVEAQIKKRLPD 407
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQY-RRQGMKMLPECATFDDGSNGVE 233
+ + ++ W + E L + +R + +P A +
Sbjct: 408 LIIEDVICLHRQYRCKLW----FVETVQFQEFLKDELVKRSAARGIPVPARAVKPVSDKL 463
Query: 234 AGISDMLDRMRSG 246
I + M +G
Sbjct: 464 LRIETLQPHMANG 476
>gi|282599341|ref|YP_003358653.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
phiSboM-AG3]
gi|226973647|gb|ACO94400.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
phiSboM-AG3]
Length = 736
Score = 37.5 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 27/226 (11%)
Query: 3 AYEQGRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPI 57
AY D + +V ++ DE E + + I +A LT TP R
Sbjct: 338 AYATSSDSIRGRSVSLLYVDEVAFIENDFEFWESTFPAIASADTSRCILTSTPKGQRGLF 397
Query: 58 IEHYLSASSSDRQVIRMTINETPHY-------NEQERKRIIDSYPLHEREARTKGEPILG 110
+ A+ Q + E P Y + + + +
Sbjct: 398 YDIVTKANPEHPQYNDFKLTEVPWYRVPTYTKDPNWESKQRAKLGDARFDQEFGIKFRGS 457
Query: 111 SGR--------------IFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
G E + + D ++ I G ++ ++
Sbjct: 458 VGSLIPAKCLDKMTSKLYQEPNEFTKIYHDYDPKRIYMGIADTGKGVEGDYSVLTILDIT 517
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKR 202
D K YR P+ + + G+ +D
Sbjct: 518 DYPHKIAAK-YRNNTIPPMMYAYTIADMGEKYGTCPMLVETNNDVG 562
>gi|298346517|ref|YP_003719204.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
gi|298236578|gb|ADI67710.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
Length = 470
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/258 (9%), Positives = 52/258 (20%), Gaps = 46/258 (17%)
Query: 11 WQSNTVHYVWFDEEPPEDVYFEGLT----------RINATQGLVTLTLTPLKGRSPI--- 57
T V DE + + + V + T RS
Sbjct: 152 IHGKTSPLVVVDEA---WAFDQARGDDLMAAFNPVGLTIPHSQVWIISTAGDTRSEWLRS 208
Query: 58 --IEHYLSASSSDRQVIRMTINE-------TPHYNEQE--------------RKRIIDSY 94
+ + + + +E + + +
Sbjct: 209 LVDKGRQAINDPGTTTAFFEWSADEEMAAANLRSDEALAFHPAIGFTQELWKIQSLAQTE 268
Query: 95 PLHEREARTKGEP-ILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153
P H I + + + G D A +
Sbjct: 269 PDHLYRRSYLNLWPTAAETSIVDLEAWEKLAEPEPASMPPDVAIGFDVATARTGATIYAA 328
Query: 154 WNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213
W D + + + + + A+ + P + D + RR
Sbjct: 329 WQ-DGETVQIHRLVSKAG--AAWVEKAIAHLQE---TLAPMAVVADDSGDNRPIIEALRR 382
Query: 214 QGMKMLPECATFDDGSNG 231
G ++ +N
Sbjct: 383 NGKEIYALRPREYASANS 400
>gi|104781263|ref|YP_607761.1| dioxygenase subunit alpha [Pseudomonas entomophila L48]
gi|95110250|emb|CAK14957.1| putative dioxygenase, alpha subunit [Pseudomonas entomophila L48]
Length = 373
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 16/199 (8%)
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ ++S + ++ + I E H DS + + G L G
Sbjct: 183 HLAARFVSDTPANWKSIVDNYLECYHCAPA-HPGFSDSVDVGQYSHSLHGNWTLQYGLAK 241
Query: 116 P-----IVEEDIVINSLDIPEHWVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
P +E + S W + + G + + ++ + + Y
Sbjct: 242 PSEQSFKFDETVKDPSFAGFWAWPCTMFNVPPGANFMTVIYEFPVDAETTLQH-YDIYFL 300
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+ + W + + D R E + + +G + S
Sbjct: 301 NKDITEEQHKLI----DWYREVFRPE----DLRLVESVQKGLKSRGYRGQGRIMVDSQRS 352
Query: 230 NGVEAGISDMLDRMRSGRW 248
E GI+ + +
Sbjct: 353 GVSEHGIAHFHNLIAVAHL 371
>gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
Length = 507
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 22/261 (8%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP--PEDVYFEGLTRINATQGLVTLTLTPLKGRSPII 58
+ D ++S V VW DE E + + L + T G++ + TP R
Sbjct: 139 FRPAGAYGDSFRSLHVGRVWVDEGAWLTERAW-KALRQCLKTGGILRIYSTPNGLRDTTY 197
Query: 59 EHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE---REARTKGEPILGSGRIF 115
Y SS V R P + E +++ Y + + GE S F
Sbjct: 198 --YRLTSSDQFHVFRWPSWLNPLWTEDRESELLEFYGGRDSSGWQHEVAGEHGKPSYGAF 255
Query: 116 PIVEEDIVINS------LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
+ + ++ + I + ++ + H L S ++ +
Sbjct: 256 NVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDRMEML-LNLTPRSGQFWIGGDLGY 314
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQH-DKRSGEQLSAQYRRQGMKMLPECATFDDG 228
V + H + S ++ + P D+G
Sbjct: 315 TNDPTEIIV--FQEMEVGERTLLKMILRVHLEHVSYPHIAQIFALLERYYTPAGIGVDNG 372
Query: 229 SNGVEAGISDMLDRMRSGRWK 249
N G++ + + + +++
Sbjct: 373 GN----GLAVVQELLTLDKYR 389
>gi|86750600|ref|YP_487096.1| hypothetical protein RPB_3490 [Rhodopseudomonas palustris HaA2]
gi|86573628|gb|ABD08185.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris
HaA2]
Length = 423
Score = 37.5 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/256 (8%), Positives = 47/256 (18%), Gaps = 25/256 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ W DE D + + + T + + +
Sbjct: 127 DPQSLRGPQFSCAWSDEMAKWRYAQDAFDMLQFGLRLGSQPRQVITTTPRPTALLKRL-- 184
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-----PILGSGRIF 115
+ + + R GE P R
Sbjct: 185 -LADPSAVTTHAPTRANALNLAPTFLEGVMARYAGTRLGRQELDGELIEDRPDALWSRAL 243
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+ L V + + + +
Sbjct: 244 IESCRVVDAPPLQRLVVAVDPPASSGKRADSCGIVAAGIAENGVTYVLADDSVAAATPTL 303
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQY--RRQGMKMLPECATFDDGSNGVE 233
+ A+ W + + GE + A +G+ + P A
Sbjct: 304 WASKAIALW----RRLDADALIVEINQGGEMVKAVINEIDRGVPVTPVRAFRGKWLRA-- 357
Query: 234 AGISDMLDRMRSGRWK 249
+ GR K
Sbjct: 358 ---EPVATLYAQGRVK 370
>gi|218768169|ref|YP_002342681.1| hypothetical protein NMA1313 [Neisseria meningitidis Z2491]
gi|121052177|emb|CAM08497.1| hypothetical protein NMA1313 [Neisseria meningitidis Z2491]
Length = 540
Score = 37.5 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 26/253 (10%), Positives = 55/253 (21%), Gaps = 26/253 (10%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTP----LKGRSPIIEHYLSASSSD 68
++ Y L R + +
Sbjct: 231 GQKYDVIYI---GTILHYDSVLNRTLNNPFWHGIKFKAMKRWPDRMDLWDRWEELFRNDG 287
Query: 69 RQVIRMTINETPHYNEQE------------RKRIIDSYPLHEREARTKGEPILGSGRIFP 116
V E+ +I ++ + +P+ G F
Sbjct: 288 ETVAEAFYLANKDEMERGAQTSWAARGVLALMKIRARDGHATFDSEYQNDPVSGEDAPFA 347
Query: 117 IVEEDIVINSLDIPEHW--VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
+ D+ G P A + R +YVV+ +
Sbjct: 348 KSMKFWNDLPSDLVYFGALDPSLGKAGASRDPSAIVIGGYQRSMGRLYVVEAQIKKRLPD 407
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQY-RRQGMKMLPECATFDDGSNGVE 233
+ + ++ W + E L + +R + +P A +
Sbjct: 408 LIIEDVICLHRQYRCKLW----FVETVQFQEFLKDELVKRSAARGIPVPARAVKPVSDKL 463
Query: 234 AGISDMLDRMRSG 246
I + M +G
Sbjct: 464 LRIETLQPHMANG 476
>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
Length = 513
Score = 37.5 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 22/222 (9%), Positives = 48/222 (21%), Gaps = 23/222 (10%)
Query: 18 YVWFDEE--PPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMT 75
+ FDE P+ ++ + + + P S ++
Sbjct: 197 WYLFDEASAVPDKIWEVAEGGLTDGEPFWFVFGNP-TRNSGRFRECWRRFRQRWNRKQID 255
Query: 76 INETPHYNEQERKRIIDSY--PLHEREARTKGEPILGS-----GRIFPIVEEDIVINSLD 128
+ N+++ Y R KG S + +
Sbjct: 256 SSTVQVTNKKKISEWESDYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRTAHVIP 315
Query: 129 IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVV----KNYRCREQTPIFHVAALKSW 184
+ + G + + V V YR + V +
Sbjct: 316 GSPRVMSLDVARGGGDN--CVFRFRHGLNGGVRKKVTLPGSEYRDSMKLAAMAVQLCSEF 373
Query: 185 GKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFD 226
P + G + + R+ G +
Sbjct: 374 K-------PDAFFIDETGVGGPVGDRIRQLGFNCIGINFASK 408
>gi|300871056|ref|YP_003785928.1| phage terminase large subunit [Brachyspira pilosicoli 95/1000]
gi|300688756|gb|ADK31427.1| phage terminase, large subunit [Brachyspira pilosicoli 95/1000]
Length = 453
Score = 37.1 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 20/195 (10%), Positives = 57/195 (29%), Gaps = 29/195 (14%)
Query: 18 YVWFDEEPP--EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE---------------- 59
+ +E + Y I A + + L P I
Sbjct: 119 ICFIEEAQTLTQRSYEILEPSIRADKSEIWLAFNPRFETDFIYRVVSQFSLYNKVYKDKE 178
Query: 60 ----HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEPILGSGR 113
+Y ++ + + + ++++ K + + E G+ G+
Sbjct: 179 NKEYYYKEYEDANILITFINYDGNYYFSDILNKSRLSTLKLMPKMYEHIWLGKIKSKHGK 238
Query: 114 IFPI----VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
+F ++ I FG ++ F + + + + + IY++ +
Sbjct: 239 VFLYSKLKFYDENKEKDKIYSNEHKAIVDPAFGEYNCFTSVIV-YTQIGNDIYLIDSGLM 297
Query: 170 REQTPIFHVAALKSW 184
R + ++ ++
Sbjct: 298 RNDSNSTTDESITNF 312
>gi|189499124|ref|YP_001958594.1| Integrase catalytic region [Chlorobium phaeobacteroides BS1]
gi|189494565|gb|ACE03113.1| Integrase catalytic region [Chlorobium phaeobacteroides BS1]
Length = 507
Score = 37.1 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 40/173 (23%), Gaps = 21/173 (12%)
Query: 85 QERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH 144
+E R E + + + + ++ G W
Sbjct: 98 EEYLAQYPDGYKKTRFYELLREWEA-------QDKATMRMTHTPGEKMFIDFSGDKPSWI 150
Query: 145 HPFAAGHL----VWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG--KWLPWAWPHD--- 195
P Y ++ F +A +K+ P D
Sbjct: 151 DPTTGEVFQPELYVAVLGGSSYTFACAVPSQKAEDFAMATVKALEFFGGCPQILVIDNLK 210
Query: 196 -----GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+D + R + +LP VE+G+ + R+
Sbjct: 211 SGVTHACYYDPDINPTFADLARHYSVAVLPARVRKPKDKGKVESGVLQVQRRI 263
>gi|189500303|ref|YP_001959773.1| Integrase catalytic region [Chlorobium phaeobacteroides BS1]
gi|189495744|gb|ACE04292.1| Integrase catalytic region [Chlorobium phaeobacteroides BS1]
Length = 507
Score = 37.1 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 40/173 (23%), Gaps = 21/173 (12%)
Query: 85 QERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWH 144
+E R E + + + + ++ G W
Sbjct: 98 EEYLAQYPDGYKKTRFYELLREWEA-------QDKATMRMTHTPGEKMFIDFSGDKPSWI 150
Query: 145 HPFAAGHL----VWNRDSDVIYVVKNYRCREQTPIFHVAALKSWG--KWLPWAWPHD--- 195
P Y ++ F +A +K+ P D
Sbjct: 151 DPTTGEVFQPELYVAVLGGSSYTFACAVPSQKAEDFAMATVKALEFFGGCPQILVIDNLK 210
Query: 196 -----GLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRM 243
+D + R + +LP VE+G+ + R+
Sbjct: 211 SGVTHACYYDPDINPTFADLARHYSVAVLPARVRKPKDKGKVESGVLQVQRRI 263
>gi|254437946|ref|ZP_05051440.1| conserved hypothetical protein [Octadecabacter antarcticus 307]
gi|198253392|gb|EDY77706.1| conserved hypothetical protein [Octadecabacter antarcticus 307]
Length = 441
Score = 37.1 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 14/186 (7%), Positives = 36/186 (19%), Gaps = 18/186 (9%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
++ + VW DE + + T K +
Sbjct: 138 DPERLRGPQFDAVWADELAKWPKAQSTWDMMQFGLRLGANPRACVTTTPK---NVEILKD 194
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRI-IDSYPLHEREARTKGEPILGSGRIFPIVEE 120
+ T + + + + G +
Sbjct: 195 FMARKSTVHTHATTQANRAYLADSFLQEVQERYCGTRLGRQELDGVLLADVDGALWSSAR 254
Query: 121 DIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWNRDSD----VIYVVKNYRCRE 171
+ +P+ + +D IYV+++ +
Sbjct: 255 LEAGHVTKLPQMDRIVVAVDPPAGANATSDACGIVVAGIVSQGPVSGWKIYVIEDASVQG 314
Query: 172 QTPIFH 177
+P
Sbjct: 315 VSPNEW 320
>gi|120602517|ref|YP_966917.1| hypothetical protein Dvul_1472 [Desulfovibrio vulgaris DP4]
gi|120562746|gb|ABM28490.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
Length = 599
Score = 37.1 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 25/226 (11%), Positives = 55/226 (24%), Gaps = 46/226 (20%)
Query: 6 QGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINA----TQGLVTLTLTPLKGRSPIIEHY 61
+ + +V+ DE + E + TL TP +
Sbjct: 257 RSAQSYHG----HVYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTPSAITHEAYPLW 312
Query: 62 LSASSSDRQVIRMTINETP------HYNEQ-------------------ERKRIIDSYPL 96
+ R +T + + ++ Y
Sbjct: 313 SGETFQRRFSKPRPWPDTEAMRAGVLCPDTYFRNIITLADAEAGGCDLFDVAQLKLEYTP 372
Query: 97 HEREARTKGEPILGSGRIF-----------PIVEEDIVINSLDIPEHWVQIGGMDFG--W 143
E E I + +F P +D+ + GG D
Sbjct: 373 EEFRQLFGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQGDPHPVGNLPVWGGYDPARSG 432
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP 189
A L RD I ++ ++ + ++ ++ ++ +
Sbjct: 433 DDASFAVLLPDLRDGGGIRCIERHKWKGRSYLWQAERIRELAEKYR 478
>gi|146277121|ref|YP_001167280.1| hypothetical protein Rsph17025_1074 [Rhodobacter sphaeroides ATCC
17025]
gi|145555362|gb|ABP69975.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
17025]
Length = 414
Score = 37.1 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 27/259 (10%), Positives = 55/259 (21%), Gaps = 26/259 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHY 61
+ + W DE + + + Q +T TP +
Sbjct: 111 DPESLRGPQFDAAWADELAKWARAEEAWDMLQFSLRLGDQPRQVVTTTP----RNVPVLR 166
Query: 62 LSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPIVE 119
+ V + + + Y +G +
Sbjct: 167 QILDNPSTVVTHAPTEANRAYLAKSFLDEVHARYDGTRLGRQELEGLLLEDVEGALWTTV 226
Query: 120 EDIVINSLDIPEHWVQIGGMDFGW-----HHPFAAGHLVWNRDSD----VIYVVKNYRCR 170
+ + + + +D + D V+++
Sbjct: 227 RIEALRAEEAGPLDRIVVAVDPPVTGHEASDECGIVVVGARTDGPPQDWQAVVLEDASVG 286
Query: 171 EQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN 230
+P A D L + G L RQ ++P S
Sbjct: 287 AASPDRWARAALDALHRH----GADRLVAEVNQGGDLVETVIRQIDPLVP--FRAVHASR 340
Query: 231 GVEAGISDMLDRMRSGRWK 249
G A + GR +
Sbjct: 341 GKAARAEPVAALYEQGRVR 359
>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
Length = 431
Score = 37.1 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 9/117 (7%), Positives = 30/117 (25%), Gaps = 11/117 (9%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRIN--ATQGLVTLTLTPLKGR 54
++ E+ + + V +E ++ ++ + + P
Sbjct: 102 FRSAER-PENIEGFGYDTVILNEAGIILKDPYLWDNAISPMLLDNPNSRAFIGGVPKGKN 160
Query: 55 SPII-EHYLSASSSDRQVIRMTINETPHYNEQERKRI---IDSYPLHEREARTKGEP 107
+ + + + + P ++E R+ + GE
Sbjct: 161 KFFDLAQRGMRNEKGWRNFQFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEF 217
>gi|254820336|ref|ZP_05225337.1| hypothetical protein MintA_10426 [Mycobacterium intracellulare ATCC
13950]
Length = 478
Score = 37.1 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 26/237 (10%), Positives = 53/237 (22%), Gaps = 38/237 (16%)
Query: 12 QSNTVHYVWFDEE--------------------PPEDVYFEGLTRINATQGLVTLT---- 47
+ ++ + DE + ++ ++ T+
Sbjct: 158 RGLSIDRLIVDEAEDLPAAEVGALQPTVYSRPHAQSLFFGTSPGPMHDSEAFATMRKSAH 217
Query: 48 --LTPLKGRSPIIEHYLSASSS-DRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
L P G + + D + T Q P A
Sbjct: 218 DGLNPRLGWAEWCAEWGDDIDDHDVWIRTNPAVATGRVPLQAIADDRAVLPPDTFRAERL 277
Query: 105 GEPI-LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV 163
+ SG + D G+D G A + ++V
Sbjct: 278 SMWVPHASGDQVFDPAVWEALTDPDSVPIADVAIGVDAGPSRDKATVCVAGRNADGRLHV 337
Query: 164 VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
+ T V L W + ++ + A+ G ++ P
Sbjct: 338 --EWY----TTAPGVTWLPRWVSAHLNGQLRAVVVDERGAP----AELDWAGARVRP 384
>gi|120603805|ref|YP_968205.1| hypothetical protein Dvul_2767 [Desulfovibrio vulgaris DP4]
gi|120564034|gb|ABM29778.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
Length = 599
Score = 37.1 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 46/226 (20%)
Query: 6 QGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINA----TQGLVTLTLTPLKGRSPIIEHY 61
+ + +V+ DE + E + TL TP +
Sbjct: 257 RSAQSYHG----HVYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTPSAITHEAYPLW 312
Query: 62 LSASSSDRQVIRMTINETP------HYNEQ-------------------ERKRIIDSYPL 96
+ R + + + ++ Y
Sbjct: 313 SGETFQRRFSKPRPWPDAEAMRAGVLCPDTYFRNIITLADAEAGGCDLFDVAQLKLEYTP 372
Query: 97 HEREARTKGEPILGSGRIF-----------PIVEEDIVINSLDIPEHWVQIGGMDFG--W 143
E E I + +F P +D+ + GG D
Sbjct: 373 EEFRQLFGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQGDPHPVGNLPVWGGYDPARSG 432
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLP 189
A L RD I ++ ++ + ++ ++ ++ +
Sbjct: 433 DDASFAVLLPDLRDGGGIRCIERHKWKGRSYLWQAERIRELAEKYR 478
>gi|163759067|ref|ZP_02166153.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43]
gi|162283471|gb|EDQ33756.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43]
Length = 492
Score = 37.1 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/188 (10%), Positives = 43/188 (22%), Gaps = 13/188 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + + Q L T +
Sbjct: 197 DPESLRGPQFDLAWCDELGKWRHARETWDMLQFALRLGQHPRQLITTTPRATP---LMLA 253
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGEPILG-SGRIFPIVE 119
+V R+ + + + R GE I ++ +
Sbjct: 254 LVKDIGTRVTRIRTEDNAGNLAAGFLDTVRARYGGTRLGRQELDGELIADREDGLWRREQ 313
Query: 120 ED--IVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRD-SDVIYVVKNYRCREQTPIF 176
+ +V + V + G G + D V+ + +P
Sbjct: 314 LEALVVRKPGPLGRIVVAVDPPASGEAKHSCCGIVAAGLDAEGRAVVLADGSQEGASPSG 373
Query: 177 HVAALKSW 184
A+
Sbjct: 374 WAGAVSRL 381
>gi|329568779|gb|EGG50579.1| hypothetical protein HMPREF9520_03411 [Enterococcus faecalis
TX1467]
Length = 161
Score = 36.7 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 17/98 (17%)
Query: 1 LKAYEQGRDKWQSNT-----VHYVWFDEEPPE-------DVYFEGLTRINATQG--LVTL 46
+ Q ++ +S W +E + L A
Sbjct: 25 FRGA-QNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFY 83
Query: 47 TLTPL-KGRSPIIEHYLS-ASSSDRQVIRMTINETPHY 82
+ P + +S + + Y S + V T + P
Sbjct: 84 SYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFI 121
>gi|217979168|ref|YP_002363315.1| protein of unknown function DUF264 [Methylocella silvestris BL2]
gi|217504544|gb|ACK51953.1| protein of unknown function DUF264 [Methylocella silvestris BL2]
Length = 435
Score = 36.7 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 25/254 (9%), Positives = 66/254 (25%), Gaps = 34/254 (13%)
Query: 9 DKWQSNTVHYVWFDEE--PPEDVYFEGLTRINATQGLV----TLTLTPLKGRSPIIEHYL 62
+K ++ +E P TR+ + + L P+ + +
Sbjct: 113 EKILGLEYATIFLNEASQIPYSSALIAFTRLAQVAPRIDQRAFVDLNPVGKTHWTNQLFG 172
Query: 63 SASSSDRQV---IRMTINETPHYNEQERKRI-------IDSYPLHEREARTKGEPI---- 108
+ + + + + P +R+ G +
Sbjct: 173 EKRDPVSRRPLPDPESYRRAFLNPPDNKANLSREFLASLSHLPEKQRKRFLDGVYVDEVD 232
Query: 109 --------LGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDV 160
+ +GR ++ + G D D D
Sbjct: 233 GALWTYAGIDAGRCAAERISVDKRAAVVVAVDPSGAAGRDDLGADEIGIIVAARGVDGDA 292
Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLP 220
Y++++ CR+ ++ A+ ++ + D + + G ++ + + +P
Sbjct: 293 -YILEDLSCRDAPAVWGRRAVVAF-----HRYQADSIVAESNFGGEMVRATIQAADRNVP 346
Query: 221 ECATFDDGSNGVEA 234
V A
Sbjct: 347 VKLVTASRGKAVRA 360
>gi|326804661|ref|YP_004327532.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
[Salmonella phage Vi01]
gi|301795311|emb|CBW38029.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
[Salmonella phage Vi01]
Length = 736
Score = 36.7 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 18/232 (7%)
Query: 3 AYEQGRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRI-NATQGLVTLTLTPLKGRSPI 57
AY D + +V ++ DE E + + I +A LT TP R
Sbjct: 338 AYATSSDSIRGRSVSLLYVDEVAFIENDFEFWESTFPAIASADTSRCILTSTPKGQRGLF 397
Query: 58 IE-----HYLSASSSDRQVIRMTINETPHY--NEQERKRIIDSYPLHEREARTKGEPILG 110
+ +D + + + P Y + + + +
Sbjct: 398 YDIVTKADPRHPQYNDFHLTEVPWYKVPAYTKDPDWETKQRARLGDARFDQEFGIKFRGS 457
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR 170
G + P D + + L + ++ P + + V
Sbjct: 458 VGSLIPAKCLDKMTSKLYREPNEFTKIYKEY---DPQRIYFGIADTGKGVEGDYSVLTIL 514
Query: 171 EQTPIFHVAALKSWGKWLP---WAWPHDGLQHDKRSGEQLSAQYRRQGMKML 219
+ T HV A K +P +A+ + + L G +++
Sbjct: 515 DITEYPHVIAAKYRNNTIPPMMYAYTIADMCTEYGECPVLVETNNDVGGQVI 566
>gi|126735952|ref|ZP_01751696.1| Putative large terminase [Roseobacter sp. CCS2]
gi|126714509|gb|EBA11376.1| Putative large terminase [Roseobacter sp. CCS2]
Length = 408
Score = 36.7 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 21/105 (20%), Gaps = 9/105 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + VW DE + + + T + + +
Sbjct: 105 DPDSLRGPQFDAVWADELAKWRRGDEAWDMLQFALRLGDSPRACVTTTPRKSQMLSDL-- 162
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKG 105
V + + K I Y +G
Sbjct: 163 -LERDTTVVTHAATQANRANLADSFLKEIEGRYGGTSLGRQEMEG 206
>gi|302773299|ref|XP_002970067.1| hypothetical protein SELMODRAFT_92939 [Selaginella moellendorffii]
gi|302807054|ref|XP_002985258.1| hypothetical protein SELMODRAFT_121776 [Selaginella moellendorffii]
gi|300147086|gb|EFJ13752.1| hypothetical protein SELMODRAFT_121776 [Selaginella moellendorffii]
gi|300162578|gb|EFJ29191.1| hypothetical protein SELMODRAFT_92939 [Selaginella moellendorffii]
Length = 419
Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 20/195 (10%), Positives = 51/195 (26%), Gaps = 11/195 (5%)
Query: 40 TQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER 99
+ + + G S + + + P + ++D +
Sbjct: 62 RESRLLYSENTAPGASKPRRMFRQIPQA-----PERTLDAPEILDDYYLNLLDWGTNNIL 116
Query: 100 EARTK---GEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNR 156
+G I +++ + + G ++
Sbjct: 117 AVALGHTVYLWNATTGGIEELMQVSEDDGPVTSVSWAPDGKHISVGLNNADVQLWDA--F 174
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
+ +K + R + ++ L + G + HD + +G+ + Q G+
Sbjct: 175 SLRQVRSLKAHTARVGSLAWNGPILST-GGRDNVIFNHDVRIREHVTGKMAAHQQEVCGL 233
Query: 217 KMLPECATFDDGSNG 231
K P G N
Sbjct: 234 KWSPSGQQLASGGND 248
>gi|53802921|ref|YP_115325.1| prophage MuMc02, terminase, ATPase subunit [Methylococcus
capsulatus str. Bath]
gi|53756682|gb|AAU90973.1| putative prophage MuMc02, terminase, ATPase subunit [Methylococcus
capsulatus str. Bath]
Length = 443
Score = 36.3 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 16/195 (8%), Positives = 42/195 (21%), Gaps = 13/195 (6%)
Query: 7 GRDKWQSNTVHYVWFDE----EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + T V DE ++ ++ + + + TP + + +
Sbjct: 114 NPDTARGFTAS-VLLDEFAFHADSRKIWQALFPVVSRSDLKLRVISTPNGKGNKFYDL-I 171
Query: 63 SASSSDRQVIRMTINE--TPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIV-- 118
+ I + + + + + +
Sbjct: 172 TGDHPVWSRHVTDIYQAVADGLPRDIEELKAGVGDDDAWAQEYELQWLDEASAWLSFELI 231
Query: 119 --EEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIF 176
E + G+D + ++ DV + + R +
Sbjct: 232 NSVEHDHAGIPEHYAGGPCFLGVDIAARNDLFVIWVL-EAVGDVYWTREILARRRISFAE 290
Query: 177 HVAALKSWGKWLPWA 191
A L
Sbjct: 291 QDALLADAFNRYRVI 305
>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
Length = 433
Score = 36.3 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 15/204 (7%), Positives = 52/204 (25%), Gaps = 20/204 (9%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEP----PEDVYFEGLTRINA--TQGLVTLTLTPLKGRS 55
++ E+ + + V +E ++ + + + P
Sbjct: 103 RSAER-PENIEGFGYDVVILNEAGIILKNSYLWDNAIRPMLLDYPNSRAFIGGVPKGKNR 161
Query: 56 PII-EHYLSASSSDRQVIRMTINETPHYNEQERKRI---IDSYPLHEREARTKGEPILGS 111
+ D +++ E P ++E + + + GE + +
Sbjct: 162 FFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVKQEIYGEFLDTT 221
Query: 112 GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCRE 171
+ + + +G + + D + + V+ +
Sbjct: 222 TNAL--FPLSQIEAAFGKVRAYEPNAVQIWGLD-------VARDGDDESVLCVREGYHVK 272
Query: 172 QTPIFHVAALKSWGKWLPWAWPHD 195
F +A+ + + +
Sbjct: 273 NLEGFRIASTTELAREIYRRYEMS 296
>gi|225620876|ref|YP_002722134.1| Phage terminase large subunit [Brachyspira hyodysenteriae WA1]
gi|225215696|gb|ACN84430.1| Phage terminase large subunit [Brachyspira hyodysenteriae WA1]
Length = 456
Score = 36.3 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 17/202 (8%), Positives = 54/202 (26%), Gaps = 29/202 (14%)
Query: 18 YVWFDEEPP--EDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQV---- 71
+ +E + Y I A + + + P I + ++
Sbjct: 119 ICFIEEAQTLTQRSYEILEPSIRAEKSEIWIAFNPRFETDFIYKTVSKFHLENQFYTDKN 178
Query: 72 ----------------IRMTINETPHYNEQERKRIIDSYP--LHEREARTKGEPILGSGR 113
+ + ++++ K + + + G+ G+
Sbjct: 179 NNKYNYKEYEDNNILITSINYDGNYYFSDILNKSRLSTLKLMPKMYDHIWLGKIKNKQGK 238
Query: 114 IFPI----VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAG-HLVWNRDSDVIYVVKNYR 168
IF +D + + + +D + +++ + + IY++ +
Sbjct: 239 IFLYSKLKFYDDDLNDIKEKINSSEHKAVVDPAFGEYNCFTSAIIYAQIGEDIYLIDSGL 298
Query: 169 CREQTPIFHVAALKSWGKWLPW 190
R T ++ +
Sbjct: 299 IRNDTNSTTDESIIKFLSNKNI 320
>gi|188026520|ref|ZP_02962415.2| hypothetical protein PROSTU_04534 [Providencia stuartii ATCC 25827]
gi|188019251|gb|EDU57291.1| hypothetical protein PROSTU_04534 [Providencia stuartii ATCC 25827]
Length = 376
Score = 36.3 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 21/192 (10%), Positives = 49/192 (25%), Gaps = 16/192 (8%)
Query: 60 HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI----- 114
++S + ++ + I E H S ++ E + + G+
Sbjct: 191 RFVSHTPANWKTIVDNYIECYHCPTNHV-SFASSVDVNVYEHQLNENWTVQIGQAKPSES 249
Query: 115 -FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ E + + M G + + + Y
Sbjct: 250 SYQFDESVVNPRFFGFWIWPSTMFNMPPGGDFMTVIYEFPVSA-GETLQHYDIYFL---- 304
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
K+ +W + + D R E + R +G + S E
Sbjct: 305 NEELTEYQKNLVEWYRTVFRPE----DLRLVESVQKGLRSRGYRGQGRIMADRQRSGISE 360
Query: 234 AGISDMLDRMRS 245
G++ + +
Sbjct: 361 HGVAHFHKLIAT 372
>gi|126728773|ref|ZP_01744588.1| terminase, large subunit, putative [Sagittula stellata E-37]
gi|126710703|gb|EBA09754.1| terminase, large subunit, putative [Sagittula stellata E-37]
Length = 432
Score = 36.3 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRIN-ATQGLVTLTLTP 50
+ + W DE D + + V +T TP
Sbjct: 128 ASEPEALRGPQFDGAWVDELAKWKRGQDTWDMLQFGLRLGDHPQVCVTTTP 178
>gi|257784380|ref|YP_003179597.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469]
gi|257472887|gb|ACV51006.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469]
Length = 496
Score = 36.3 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 25/245 (10%), Positives = 48/245 (19%), Gaps = 44/245 (17%)
Query: 10 KWQSNTVHYVWFDEEPP-EDVYFEGLTRIN----ATQGLVTLTLTPLKGR---------- 54
K + T + DE D + V TP
Sbjct: 166 KARGGTRSLIIIDEAQELTDAQLNAILPTVSASKDGSPQVIYIGTPPDPTCRGTVFKRMH 225
Query: 55 -----------SPIIEHYLSASSSDR---QVIRMTINETP----HYNEQERKRIIDSYPL 96
+ S D + + P E+
Sbjct: 226 DTAHSDDPGEAWWLEWAAKSVPKEDTSDEEALDFAYETNPALGSRITERAVLNEWHQMTR 285
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP---FAAGHLV 153
G + IV + + + + + A +
Sbjct: 286 DGFARERLGWWSTLDTSVEYIVNANDWNECITEEPYDDGLLAFGIKYSLDGKKVAVSAAL 345
Query: 154 WNRDSDVIYV-VKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQY 211
+D YV + + +K + + D RSG L+ +
Sbjct: 346 KQQDIPTAYVELVDIADAYGAGQNLAQWIKERESRI------ACVVIDGRSGATQLAERL 399
Query: 212 RRQGM 216
+
Sbjct: 400 QELHF 404
>gi|309794178|ref|ZP_07688602.1| rieske [2Fe-2S] domain protein [Escherichia coli MS 145-7]
gi|308122083|gb|EFO59345.1| rieske [2Fe-2S] domain protein [Escherichia coli MS 145-7]
Length = 374
Score = 36.3 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 48/196 (24%), Gaps = 17/196 (8%)
Query: 60 HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG----RIF 115
+ + + ++ + I E H DS + G L G
Sbjct: 190 RFTTRTPANWKNIVDNYLECYHCGPA-HPGFSDSVQVDRYWHTIHGNWTLQYGFAKPSEQ 248
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
E+ + W + + Y T
Sbjct: 249 SFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDSETTLQNYDIYF----TNE 304
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
KS +W + + D R E + + +G + GS E G
Sbjct: 305 ELTDEQKSLIEWYRDVFRPE----DLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHG 360
Query: 236 ISDMLDRMRSGRWKVF 251
I+ + + +VF
Sbjct: 361 IAHFHNLLA----QVF 372
>gi|316934938|ref|YP_004109920.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1]
gi|315602652|gb|ADU45187.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1]
Length = 431
Score = 35.9 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 34/158 (21%), Gaps = 24/158 (15%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE + + L T + I
Sbjct: 135 DPDSLRGPQFEAAWCDELAKWRYAEASFDMLQFGLRLGSRPRQLITTTPRPLPLIKRL-- 192
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLH-EREARTKGEPILGSGRIFPIVEE 120
+ +V R H + + ++ Y + GE
Sbjct: 193 -LADPHTRVTRAPTRANAAHLSPAFLETVVARYAGTRQGRQELDGE-------------- 237
Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDS 158
++ + D +I G P + +
Sbjct: 238 -LIEDRPDALWSRDRIERARVGAAPPMVRIVVAIDPPG 274
>gi|257880676|ref|ZP_05660329.1| 16 glycosylhydrolase [Enterococcus faecium 1,230,933]
gi|257814904|gb|EEV43662.1| 16 glycosylhydrolase [Enterococcus faecium 1,230,933]
Length = 290
Score = 35.9 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 8/129 (6%)
Query: 45 TLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTK 104
T T +P E + D ++ N++ + +
Sbjct: 152 FFTYTGPSENNPWDEIDIEFLGKDTTGVQFNYFTNGLGNKEYYHNLGFDASEAFHTYAFE 211
Query: 105 GEPILGS----GRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP---FAAGHLVWNRD 157
P + G E+I I + G+D W +P ++
Sbjct: 212 WLPDSITWFVDGEKIYTATENIPQTPGKIMMNVWPGTGVDS-WLNPFDGTVPLKAEYDWI 270
Query: 158 SDVIYVVKN 166
Y +
Sbjct: 271 KFTQYKIVE 279
>gi|115523910|ref|YP_780821.1| hypothetical protein RPE_1893 [Rhodopseudomonas palustris BisA53]
gi|115517857|gb|ABJ05841.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
BisA53]
Length = 423
Score = 35.9 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 27/260 (10%), Positives = 56/260 (21%), Gaps = 26/260 (10%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + L T + + +
Sbjct: 127 DPESLRGPQFSCAWSDEMAKWRYAEATFDMLQFGLRLGPQPRQLITTTPRPIALLKRL-- 184
Query: 63 SASSSDRQVIRMTINETPHY-NEQERKRIIDSYPLHER-EARTKGE-----PILGSGRIF 115
+ V R + ++ Y GE P R
Sbjct: 185 -IADPLSVVTRAPTRANAFNLAPTFLQSVMKRYDGTRLGRQELDGEIIEDRPDALWSRAL 243
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
L V D++V++V+ + +P
Sbjct: 244 IEQCRVEAAPPLRRIVVAVDPPVSSTKRSDACGIVAAGL-ADNNVVHVLADDSVAGASPA 302
Query: 176 FHVAALKSWGKWLPWAWPH-DGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
+++ W + + +G+ ++P AT
Sbjct: 303 AWA--MRAIALWRRLEADALVAEINQGGDMVRTVIHGIDRGVPVVPVRATRGKWLRA--- 357
Query: 235 GISDMLDRMRSGRWK---VF 251
+ GR K +F
Sbjct: 358 --EPVAALYEQGRVKHVGIF 375
>gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
Length = 478
Score = 35.9 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 17/189 (8%), Positives = 33/189 (17%), Gaps = 20/189 (10%)
Query: 5 EQGRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQG-LVTLTLTPLKGRSPIIE 59
+ + W DE D + + V +T TP +
Sbjct: 173 ASDPEALRGPQFDAAWVDELAKWRRAQDAWDMLQFALRLGAAPRVCVTTTP----RNVPL 228
Query: 60 HYLSASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGEPILGSGRIFPI 117
S + + Y G +
Sbjct: 229 LKQLLESPSTVTTHAPTEANRANLAPGFLTEVRARYGGSRLARQELDGVMLADVDGALWT 288
Query: 118 VEEDIVINSLDIPEHWVQIGGMD-----FGWHHPFAAGHLVWNRDSD----VIYVVKNYR 168
+ D P + +D YV+ ++
Sbjct: 289 SGMLEQLQRRDRPPLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAYVLADHT 348
Query: 169 CREQTPIFH 177
+ P
Sbjct: 349 VQGLGPTGW 357
>gi|116753629|ref|YP_842747.1| histidinol-phosphate aminotransferase [Methanosaeta thermophila PT]
gi|116665080|gb|ABK14107.1| histidinol phosphate aminotransferase apoenzyme [Methanosaeta
thermophila PT]
Length = 352
Score = 35.9 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 57/202 (28%), Gaps = 13/202 (6%)
Query: 32 EGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRII 91
E + R+ + +P +++ L + I + + +E +
Sbjct: 141 EMIERLRDKSIGMVFICSPNNPTGEVVDEELL------RSIIESTDAVVFLDEAYVEFAE 194
Query: 92 DSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGG-MDFGWHHPFAAG 150
S E S + + ++ FG P A
Sbjct: 195 RSMVDLVNEYENLVVGRTMSKAFGLAGVRLGYALAPEWIAEAYRMAAPPFFGVTTPAVAA 254
Query: 151 HLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQ 210
+ D + + RE+ +++ W + + + D ++ +
Sbjct: 255 GIAALSDLEHMRRSVEMIKREREL-LLSEIVEASPSWGNFLYIETSERSDV-----ITER 308
Query: 211 YRRQGMKMLPECATFDDGSNGV 232
R+G+ + + D G + +
Sbjct: 309 MLRKGIIVRDCRSFRDAGDHHI 330
>gi|321157116|emb|CBW39102.1| Phage terminase [Streptococcus phage 23782]
Length = 470
Score = 35.9 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 30/255 (11%), Positives = 63/255 (24%), Gaps = 40/255 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLT--RINATQGLV-TLTLTPLK----------------- 52
+ DE E + + + + TP
Sbjct: 157 GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKNCLF 216
Query: 53 ------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
G + + H NE++ + + L R
Sbjct: 217 GKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAELGDDKLDHNVQRLGYW 276
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P E + + G+ +G A + + I+V +
Sbjct: 277 PEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETI 336
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMK--MLPE 221
R + + +K + D SG+++ + +++ MK +LP
Sbjct: 337 DCQSVRN-GNDWILDFVKR--------ADVATIVVDGASGQKILDEELKKERMKSVILPT 387
Query: 222 CATFDDGSNGVEAGI 236
++ E GI
Sbjct: 388 VKEIIVANSMWEQGI 402
>gi|292496201|gb|ADE29302.1| hypothetical protein [uncultured virus]
Length = 165
Score = 35.9 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS 203
+A + + IYV+ R R T ++ + + +P + + +S
Sbjct: 6 SDYWAISLIGVRPTTGEIYVIDQKRKRGMTLREGISWISNTASQVP---APELIIESNQS 62
Query: 204 GEQLSAQYRRQGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251
L + +G+ P T D E + D+ + + R +F
Sbjct: 63 QRWLQQELASEGLNTTPVSTTRDK-----EDKLIDLSIPLENDRI-IF 104
>gi|170679804|ref|YP_001743444.1| Rieske (2Fe-2S) domain-containing protein [Escherichia coli
SMS-3-5]
gi|170517522|gb|ACB15700.1| Rieske 2Fe-2S domain protein [Escherichia coli SMS-3-5]
Length = 374
Score = 35.9 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 51/197 (25%), Gaps = 19/197 (9%)
Query: 60 HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG----RIF 115
+ + + ++ + I E H DS + G L G
Sbjct: 190 RFTTRTPANWKNIVDNYLECYHCGPA-HPGFSDSVQVDRYWHTMHGNWTLQYGFAKPSEQ 248
Query: 116 PIVEEDIVINSLDIPEHWVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTP 174
E+ + W + + A + + Y T
Sbjct: 249 SFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTAIYEFPVD-SETTLQNYDIYF----TN 303
Query: 175 IFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEA 234
KS +W + + D R E + + +G + GS E
Sbjct: 304 EELTDEQKSLIEWYRDVFRPE----DLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEH 359
Query: 235 GISDMLDRMRSGRWKVF 251
GI+ + + +VF
Sbjct: 360 GIAHFHNLLA----QVF 372
>gi|170751343|ref|YP_001757603.1| hypothetical protein Mrad2831_4961 [Methylobacterium radiotolerans
JCM 2831]
gi|170657865|gb|ACB26920.1| protein of unknown function DUF264 [Methylobacterium radiotolerans
JCM 2831]
Length = 432
Score = 35.9 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 49/178 (27%), Gaps = 14/178 (7%)
Query: 8 RDKWQSNTVHYVWFDEEP----PEDVYFEGLTRIN-ATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE PE + + + +T TP P+
Sbjct: 139 PDALRGPQFGAAWCDEAAKWRRPEAAFDMLQFGLRLGARPRNLVTTTP----RPVPLIRR 194
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLHER-EARTKGEPILGSGRI---FPI 117
+ V R ++ H ++++ Y GE I
Sbjct: 195 LLADPRTVVSRARTHDNAAHLAPDFLQQVVGRYAGTRLGRQELDGELIADRDDALWTRAA 254
Query: 118 VEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
+E D + + D+ V + A G + R YV+ + TP
Sbjct: 255 LEADRIAAAPDLGRIVVAVDPPAASGARSDACGIVAAGRAGGHAYVLADASLARATPQ 312
>gi|139473519|ref|YP_001128235.1| putative phage terminase [Streptococcus pyogenes str. Manfredo]
gi|134271766|emb|CAM29999.1| putative phage terminase [Streptococcus pyogenes str. Manfredo]
Length = 471
Score = 35.9 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 69/257 (26%), Gaps = 40/257 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTR---INATQGLVTLTLTPLK----------------- 52
+ DE E + ++ + + TP
Sbjct: 158 GEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTMVSTGTVFEAYRKDCLK 217
Query: 53 ------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
G + + + + H NE++ + + + R
Sbjct: 218 GNKRYSGWAEWSVDEMQPIHDVKSWYIANPSMGFHLNERKIEAELGEDEIDHNIQRLGYW 277
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P + E + G+ FG + + + ++V +
Sbjct: 278 PSFNQKSVISEKEWAKLKVEQVPELKSKLFVGIKFGQDGNNVSLSIAARTSENKVFVETI 337
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQ-LSAQYRRQGMK--MLPE 221
R T + + LKS + D SG++ L+ + + QG+K LP+
Sbjct: 338 DCLSVRNGT-QWIINFLKS--------ADIAKVVIDGASGQELLAQEMKEQGLKKPELPK 388
Query: 222 CATFDDGSNGVEAGISD 238
A + E GI
Sbjct: 389 VAEIITANMMWEQGIMQ 405
>gi|209885731|ref|YP_002289588.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
gi|209873927|gb|ACI93723.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
Length = 434
Score = 35.9 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/171 (9%), Positives = 28/171 (16%), Gaps = 14/171 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + W DE + + L T + + I
Sbjct: 139 DPESLRGPQFACAWADELAKWRYAEAAFDMLQFGLRLGAQPRQLITTTPRPTALIKRLLN 198
Query: 63 SASSSDRQVIRMTINETP-HYNEQERKRIIDSYPLHER-EARTKGE-----PILGSGRIF 115
R H + ++ Y GE P R
Sbjct: 199 ---DESCVTTRAATRSNALHLAPTFLQSVMARYAGTRLGRQELDGELIEERPDALWSRGL 255
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKN 166
L V D+ + +
Sbjct: 256 IETCRISEAPPLQRIVVAVDPPATSGKRADACGIVAAGVAADNGLYVLADE 306
>gi|170770108|ref|ZP_02904561.1| Rieske 2Fe-2S domain protein [Escherichia albertii TW07627]
gi|170121065|gb|EDS89996.1| Rieske 2Fe-2S domain protein [Escherichia albertii TW07627]
Length = 374
Score = 35.9 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 48/196 (24%), Gaps = 17/196 (8%)
Query: 60 HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSG----RIF 115
+ + + ++ + I E H DS + G L G
Sbjct: 190 RFTTRTPANWKNIVDNYLECYHCGPA-HPGFSDSVQVDRYWHTMHGNWTLQYGFAKPSEQ 248
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
E+ + W + + Y T
Sbjct: 249 SFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDSETTLQNYDIYF----TNE 304
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
KS +W + + D R + + + +G + GS E G
Sbjct: 305 ELTDEQKSLIEWYRDVFRPE----DLRLVKSVQKGLKSRGYRGQGRIMADSSGSGISEHG 360
Query: 236 ISDMLDRMRSGRWKVF 251
I+ + + +VF
Sbjct: 361 IAHFHNLLA----QVF 372
>gi|291530946|emb|CBK96531.1| xylulokinase [Eubacterium siraeum 70/3]
Length = 509
Score = 35.9 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 41/143 (28%), Gaps = 7/143 (4%)
Query: 101 ARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP----FAAGHLVWNR 156
A G I SG + ED + + ++ + + P A + + +
Sbjct: 2 AYILGVDIGTSGTKTVLFSEDGTPVASALYDYPLYTPCNGYAEQDPADWWNACVNSIRDV 61
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
+ + + H + + + D+R+G+++ + G
Sbjct: 62 VAKSGVPADEIKGVGLSGQMHGLVMLDKDNK---VIRNSIIWCDQRTGKEVVEITEKVGH 118
Query: 217 KMLPECATFDDGSNGVEAGISDM 239
L + A I +
Sbjct: 119 DRLIAITANPAITGFTAAKIMWV 141
>gi|167749900|ref|ZP_02422027.1| hypothetical protein EUBSIR_00868 [Eubacterium siraeum DSM 15702]
gi|167657212|gb|EDS01342.1| hypothetical protein EUBSIR_00868 [Eubacterium siraeum DSM 15702]
gi|291557546|emb|CBL34663.1| xylulokinase [Eubacterium siraeum V10Sc8a]
Length = 509
Score = 35.9 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 41/143 (28%), Gaps = 7/143 (4%)
Query: 101 ARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHP----FAAGHLVWNR 156
A G I SG + ED + + ++ + + P A + + +
Sbjct: 2 AYILGVDIGTSGTKTVLFSEDGTPVASALYDYPLYTPCNGYAEQDPADWWNACVNSIRDV 61
Query: 157 DSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGM 216
+ + + H + + + D+R+G+++ + G
Sbjct: 62 VAKSGVPADEIKGVGLSGQMHGLVMLDKDNK---VIRNSIIWCDQRTGKEVVEITEKVGH 118
Query: 217 KMLPECATFDDGSNGVEAGISDM 239
L + A I +
Sbjct: 119 DRLIAITANPAITGFTAAKIMWV 141
>gi|163731339|ref|ZP_02138786.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149]
gi|161394793|gb|EDQ19115.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149]
Length = 286
Score = 35.5 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 22/107 (20%), Gaps = 13/107 (12%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGL--TRINATQGLVTLTLTPLKGRSPIIEH 60
++ + W DE D + R+ V +T TP +
Sbjct: 105 DPEELRGPQFDAAWVDELAKWKKAQDTWDMLQFALRLGDKP-QVCVTTTP----RNVGVL 159
Query: 61 YLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKG 105
S + + + R G
Sbjct: 160 KTLMKSPSTVSSHAPTEANAANLARSFLEEVRARYAGTRLGRQELDG 206
>gi|195581557|ref|XP_002080600.1| GD10165 [Drosophila simulans]
gi|194192609|gb|EDX06185.1| GD10165 [Drosophila simulans]
Length = 489
Score = 35.5 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 21/221 (9%), Positives = 47/221 (21%), Gaps = 28/221 (12%)
Query: 20 WFD---EEPPEDVYFEGLTRINATQGLVTLTLTPLK---GRSPIIEH-YLSASSSDRQVI 72
+FD E D + + R N + L P S ++ D V
Sbjct: 101 FFDIQPEYGTLDDFRALIKRANELDLKIILDFVPNHSSDENSWFVKSVNREKGYEDYYVW 160
Query: 73 R---MTINETPHYNEQERKRIID---SYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ + +R+ + + + +
Sbjct: 161 HDGKVNATTGDREPPSNWLQAFRGSAWEWNEKRQQYYLHQFAVQQADLNYRNPLVV--EQ 218
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNY-----------RCREQTPI 175
+ + G+ G+ D+D Y + +
Sbjct: 219 MKRVLRYWLDLGVA-GFRCDAVPVLFEIEPDADGQYADEELSGLTDDVDDRKYLKSDLIE 277
Query: 176 FHVAALKSWGKWLPWAW-PHDGLQHDKRSGEQLSAQYRRQG 215
+ +WL + + +R G
Sbjct: 278 NRPETIDMAYQWLYIILIRPERNVRQSMMPPRYGNMHRTAG 318
>gi|170718825|ref|YP_001784004.1| phage uncharacterized protein [Haemophilus somnus 2336]
gi|168826954|gb|ACA32325.1| phage uncharacterized protein [Haemophilus somnus 2336]
Length = 547
Score = 35.5 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 28/254 (11%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTRINATQGL-----VTLTLTPLKGRSPIIEHYLSASSS 67
+ V+ Y L R + LT P +
Sbjct: 231 GDKFDIVYI---GTILHYDSVLNRTLHNKAWHTAKFKALTKMPDNMALWDKWEDFYL-NE 286
Query: 68 DRQVIRMTINETPHYNEQERKRIIDSYP------------LHEREARTKGEPILGSGRIF 115
V + + + + P ++ + +P+ G IF
Sbjct: 287 GEAVADAFYQQNKAEMDAGAEISWAARPLLALMKIRARDGHATFDSEYQNDPVSGDDAIF 346
Query: 116 PIVEEDIVINSLDIPEHW--VQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ ++ G P A ++R++ +YV++ +
Sbjct: 347 ANSIQYWTSLPDNLIYFGALDPSMGKAGASRDPSAILVGGYHRETGKLYVIEAQIKKRLP 406
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQY-RRQGMKMLPECATFDDGSNGV 232
+ ++ ++ W + E L + +R + P AT +
Sbjct: 407 DLIIEDVIRLNSQYQCHRW----FVETVQFQEFLQTELVKRSAQRGKPVPATAIKPNTDK 462
Query: 233 EAGISDMLDRMRSG 246
I + + +G
Sbjct: 463 MLRIESLQPHIVNG 476
>gi|225857863|ref|YP_002739373.1| putative phage terminase, large subunit [Streptococcus pneumoniae
70585]
gi|303255462|ref|ZP_07341526.1| Phage terminase [Streptococcus pneumoniae BS455]
gi|303259344|ref|ZP_07345322.1| Phage terminase [Streptococcus pneumoniae SP-BS293]
gi|303261101|ref|ZP_07347050.1| Phage terminase [Streptococcus pneumoniae SP14-BS292]
gi|303263429|ref|ZP_07349352.1| Phage terminase [Streptococcus pneumoniae BS397]
gi|303265593|ref|ZP_07351493.1| Phage terminase [Streptococcus pneumoniae BS457]
gi|303267848|ref|ZP_07353650.1| Phage terminase [Streptococcus pneumoniae BS458]
gi|225721021|gb|ACO16875.1| putative phage terminase, large subunit [Streptococcus pneumoniae
70585]
gi|302597602|gb|EFL64684.1| Phage terminase [Streptococcus pneumoniae BS455]
gi|302637938|gb|EFL68424.1| Phage terminase [Streptococcus pneumoniae SP14-BS292]
gi|302639762|gb|EFL70219.1| Phage terminase [Streptococcus pneumoniae SP-BS293]
gi|302642544|gb|EFL72889.1| Phage terminase [Streptococcus pneumoniae BS458]
gi|302645033|gb|EFL75280.1| Phage terminase [Streptococcus pneumoniae BS457]
gi|302647202|gb|EFL77426.1| Phage terminase [Streptococcus pneumoniae BS397]
Length = 470
Score = 35.5 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 30/255 (11%), Positives = 63/255 (24%), Gaps = 40/255 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLT--RINATQGLV-TLTLTPLK----------------- 52
+ DE E + + + + TP
Sbjct: 157 GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKNCLF 216
Query: 53 ------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
G + + H NE++ + + L R
Sbjct: 217 GKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAELGDDKLDHNVQRLGYW 276
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P E + + G+ +G A + + I+V +
Sbjct: 277 PEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETI 336
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMK--MLPE 221
R + + +K + D SG+++ + +++ MK +LP
Sbjct: 337 DCQSVRN-GNDWILDFVKR--------ADVATIVVDGASGQKILDEELKKERMKSVILPT 387
Query: 222 CATFDDGSNGVEAGI 236
++ E GI
Sbjct: 388 VKEIIVANSMWEQGI 402
>gi|148998991|ref|ZP_01826425.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae
SP11-BS70]
gi|147755199|gb|EDK62252.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae
SP11-BS70]
Length = 470
Score = 35.5 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 30/255 (11%), Positives = 63/255 (24%), Gaps = 40/255 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLT--RINATQGLV-TLTLTPLK----------------- 52
+ DE E + + + + TP
Sbjct: 157 GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKNCLF 216
Query: 53 ------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGE 106
G + + H NE++ + + L R
Sbjct: 217 GKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAELGDDKLDHNVQRLGYW 276
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P E + + G+ +G A + + I+V +
Sbjct: 277 PEYNQKSAISETEWNELCVDSIPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETI 336
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMK--MLPE 221
R + + +K + D SG+++ + +++ MK +LP
Sbjct: 337 DCQSVRN-GNDWILDFVKR--------ADVATIVVDGASGQKILDEELKKERMKSVILPT 387
Query: 222 CATFDDGSNGVEAGI 236
++ E GI
Sbjct: 388 VKEIIVANSMWEQGI 402
>gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
Length = 529
Score = 35.5 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 7 GRDKWQSNTVHYVWFDEEPPEDV----YFEGLTRINAT--QGLVTLTLTPLK--GRSPII 58
+WQ + DE + G R + + +T P +I
Sbjct: 130 DEKRWQGRAHDFKALDEATEIRESQARFVMGWNRSSDPTIKSKCLMTFNPPTTAEGRWVI 189
Query: 59 EHYLSASSSDR 69
+++
Sbjct: 190 DYFAPWIKKGH 200
>gi|192290494|ref|YP_001991099.1| hypothetical protein Rpal_2102 [Rhodopseudomonas palustris TIE-1]
gi|192284243|gb|ACF00624.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
TIE-1]
Length = 386
Score = 35.5 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 29/254 (11%), Positives = 53/254 (20%), Gaps = 21/254 (8%)
Query: 7 GRDKWQSNTVHYVWFDEEPPED----VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
D + W DE + + L T + I
Sbjct: 90 DPDSLRGPQFEAAWCDELAKWRYAEASFDMLQFGLRLGARPRQLITTTPRPLPLIKRL-- 147
Query: 63 SASSSDRQVIRMTINET-PHYNEQERKRIIDSYPLH-EREARTKGE-----PILGSGRIF 115
+ +V R H + + ++ Y + GE P R
Sbjct: 148 -LADPHTRVTRAPTRANAAHLSPAFLETVVARYAGTRQGRQELDGELIEDRPDALWSRDR 206
Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPI 175
L + G + D + R
Sbjct: 207 IERARVAAAPPLVRIVVAIDPPGSSRPGADACGIVAAGRSAAGDYYVLEDVSSDRLSPAA 266
Query: 176 FHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVEAG 235
+ A+ L D + + G ++ + +P + V A
Sbjct: 267 WATRAIA-----LYRRLEADAIIAEVNMGGEMVRAVLHETDAAIPVREVRASRAKFVRA- 320
Query: 236 ISDMLDRMRSGRWK 249
+ GR K
Sbjct: 321 -EPVAALYEQGRVK 333
>gi|292496056|gb|ADE29157.1| terminase [uncultured virus]
Length = 172
Score = 35.5 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 5 EQGRDKWQSNTVHYVWFDE--EPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIE 59
+ ++ + + +VW DE P + R+ + T KG+ + +
Sbjct: 113 TKTVERLRGLNLAWVWIDERTAVPSRAQEIAMQRLRIGEYRNLYVTTTPKGKDDVYD 169
>gi|195332494|ref|XP_002032932.1| GM20684 [Drosophila sechellia]
gi|194124902|gb|EDW46945.1| GM20684 [Drosophila sechellia]
Length = 599
Score = 35.5 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 18/193 (9%), Positives = 39/193 (20%), Gaps = 16/193 (8%)
Query: 20 WFD---EEPPEDVYFEGLTRINATQGLVTLTLTPLK---GRSPIIEH-YLSASSSDRQVI 72
+FD E D + + R N + L P S ++ D V
Sbjct: 101 FFDIQPEYGTLDDFRALIKRANELDLKIILDFVPNHSSDENSWFVKSVNREKGYEDYYVW 160
Query: 73 R---MTINETPHYNEQERKRIID---SYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ + +R+ + + + +
Sbjct: 161 HDGKVNSTTGDREPPSNWLQAFRGSAWEWNEKRQQYYLHQFAVQQADLNYRNPLVV--KQ 218
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ + G+ G+ D+D Y + +
Sbjct: 219 MKRVLRYWLDLGVA-GFRCDAVPVLFEIEPDADGQYADEELSGLTDDVDDRKYLKSDLIE 277
Query: 187 WLPWAWPHDGLQH 199
P
Sbjct: 278 NRPETIDMAYQWR 290
>gi|307126229|ref|YP_003878260.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B]
gi|306483291|gb|ADM90160.1| phage terminase, large subunit, putative [Streptococcus pneumoniae
670-6B]
gi|321157162|emb|CBW39147.1| Phage terminase [Streptococcus phage 11865]
Length = 470
Score = 35.5 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 31/255 (12%), Positives = 66/255 (25%), Gaps = 40/255 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLT--RINATQGLV-TLTLTPLKGRSP------------- 56
+ DE E + + + + TP S
Sbjct: 157 GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKTCLF 216
Query: 57 ------IIEHYLSASSSDRQVIRMTINET----PHYNEQERKRIIDSYPLHEREARTKGE 106
+ + + + N H NE++ + + L R
Sbjct: 217 GKGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGYHLNERKIEAELGDDKLDHNVQRLGYW 276
Query: 107 PILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
P E + + G+ +G A + + I+V +
Sbjct: 277 PEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETI 336
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQL-SAQYRRQGMK--MLPE 221
R + + +K + D SG+++ + +++ MK +LP
Sbjct: 337 DCQSVRN-GNDWILDFVKR--------ADVATIVVDGASGQKILDEELKKERMKSVILPT 387
Query: 222 CATFDDGSNGVEAGI 236
++ E GI
Sbjct: 388 VKEIIVANSMWEQGI 402
>gi|194753059|ref|XP_001958836.1| GF12585 [Drosophila ananassae]
gi|190620134|gb|EDV35658.1| GF12585 [Drosophila ananassae]
Length = 599
Score = 35.5 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 17/193 (8%), Positives = 41/193 (21%), Gaps = 24/193 (12%)
Query: 20 WFD---EEPPEDVYFEGLTRINATQGLVTLTLTPLK---GRSPIIEH-YLSASSSDRQVI 72
+FD E D + + R N + L P ++ D V
Sbjct: 101 FFDIQPEYGTLDDFKALIKRANELDLKIILDFVPNHSSDENDWFVKSVNREKGYEDYYVW 160
Query: 73 R---MTINETPHYNEQERKRIID---SYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ R+ + + + +
Sbjct: 161 HDGKTNAETGEREPPSNWLQAFRGSAWEWNDVRQQYYLHQFAVQQADLNYRNPLVV--EQ 218
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV------AA 180
+ + G+ G+ D + Y + T
Sbjct: 219 MKRVLRYWLDLGVA-GFRCDAVPVLFEIEPDENGQYADEEV--SGLTNDTEARNYLKSDL 275
Query: 181 LKSWGKWLPWAWP 193
+++ + + A+
Sbjct: 276 IENLPETIDMAYQ 288
>gi|153212065|ref|ZP_01947882.1| putative TerL [Vibrio cholerae 1587]
gi|124116861|gb|EAY35681.1| putative TerL [Vibrio cholerae 1587]
Length = 474
Score = 35.5 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 26/293 (8%), Positives = 56/293 (19%), Gaps = 77/293 (26%)
Query: 6 QGRDKWQSNTVHYVWFDEEPP---------EDVYFEGLTRINATQGLVT----LTLTPLK 52
+ K S + +W +E + + +
Sbjct: 83 KDVQKLMSFEMTGIWINEAQFLNKAIVTEAVSRATQARYPTASKGYPTWCGVIMDTNSPD 142
Query: 53 GRSPII------EHYLSASSSDRQV----------------------IRMTINETPHYNE 84
+ Y I+ I + +
Sbjct: 143 DDHWWYELEKGVDEYGEPKKPSNWSFYEQPGALIEITNIPHDALSPEIKANIEKGWFRDI 202
Query: 85 QERKRIIDSYPLHEREAR--TKGEPILGSGRIFPIVEEDIVINSLD-------------- 128
Q ++ + + + R G + I +
Sbjct: 203 QGKRFVANPLAENVRHDNKGYSAWFDQLGGASLNWIRSRICNQFVTVADGRPVYGDHFNR 262
Query: 129 ----------IPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHV 178
+ W I G+DFG AA + + +V +
Sbjct: 263 ELHVAKQKLLPVKGWRTIVGIDFGLTP--AAIFGQISPIGQ-LRIVDEIVASGLGAERFI 319
Query: 179 A-------ALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECAT 224
A K G + + G+ + R+G+
Sbjct: 320 QQDVKPLLAQKYRGCDVEFFGDPAGIARAQSDETTCFQIMEREGLNADAAHTN 372
>gi|284042708|ref|YP_003393048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Conexibacter woesei DSM 14684]
gi|283946929|gb|ADB49673.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Conexibacter woesei DSM 14684]
Length = 1090
Score = 35.1 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 5/198 (2%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVI 72
++ + +E PE + G +A + VT+ G E +L + D V+
Sbjct: 313 GRSLVLLQGEETDPEAIAEMGAALRSADECWVTVRNYRRDGSVFWNEIFLMPVADDDGVV 372
Query: 73 RMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEH 132
R I + + + + P + + + I ++
Sbjct: 373 RRYIGILHDVTARVTAAVELAETESRYRTLVETIPAVTYVAEWDELGTLIYVSPQI---- 428
Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDS-DVIYVVKNYRCREQTPIFHVAALKSWGKWLPWA 191
+G GW + + D D + Y R++ L + + W
Sbjct: 429 EEMMGFPAAGWLGETSLWDTQIHPDDVDRVMAETRYAFRQEQAFDCEYRLIAADGRIVWV 488
Query: 192 WPHDGLQHDKRSGEQLSA 209
W HD + D+ +L+
Sbjct: 489 WEHDTVIRDEHGRPRLTQ 506
>gi|268592179|ref|ZP_06126400.1| putative dioxygenase subunit alpha YeaW [Providencia rettgeri DSM
1131]
gi|291312580|gb|EFE53033.1| putative dioxygenase subunit alpha YeaW [Providencia rettgeri DSM
1131]
Length = 375
Score = 35.1 bits (79), Expect = 8.2, Method: Composition-based stats.
Identities = 22/188 (11%), Positives = 47/188 (25%), Gaps = 16/188 (8%)
Query: 60 HYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRI----- 114
++S + ++ + I E H S ++ E + + G+
Sbjct: 190 RFVSHTPANWKTIVDNYIECYHCPTNHV-SFASSVDVNVYEHQLLDNWTVQIGKAKPSES 248
Query: 115 -FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQT 173
+ E + + M G N + + Y
Sbjct: 249 SYQFDESVLDPRFFGFWIWPSTMFNMPPGGDFMTVIYEFPVNA-GETLQHYDIYFL---- 303
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
K+ +W + + D R E + R +G + S E
Sbjct: 304 NEELTEYQKNLVEWYRTVFRPE----DLRLVESVQKGLRSRGYRGQGRIMADRQRSGISE 359
Query: 234 AGISDMLD 241
G++
Sbjct: 360 HGVAHFHK 367
>gi|167033200|ref|YP_001668431.1| Rieske (2Fe-2S) domain-containing protein [Pseudomonas putida GB-1]
gi|166859688|gb|ABY98095.1| Rieske (2Fe-2S) domain protein [Pseudomonas putida GB-1]
Length = 373
Score = 35.1 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 16/199 (8%)
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIF 115
+ ++S + ++ + I E H DS + + G L G
Sbjct: 183 HLAARFVSDTPANWKSIVDNYLECYHCAPA-HPGFSDSVDVGQYSHTMHGNWTLQYGLAK 241
Query: 116 P-----IVEEDIVINSLDIPEHWVQ-IGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRC 169
P +E++ S W + + G + + ++ + + Y
Sbjct: 242 PSEQSFKFDENVKDPSFAGFWAWPCTMFNVPPGANFMTVIYEFPVDAETTLQH-YDIYFL 300
Query: 170 REQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGS 229
+ + W + + D R E + + +G + + S
Sbjct: 301 NKDITEEQQKLI----DWYREVFRPE----DLRLVESVQKGLKSRGYRGQGRIMADRERS 352
Query: 230 NGVEAGISDMLDRMRSGRW 248
E GI+ + +
Sbjct: 353 GMSEHGIAHFHNLIAVAHL 371
>gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098]
gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098]
Length = 466
Score = 35.1 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 36/233 (15%)
Query: 13 SNTVHYVWFDEEPPEDVYFEGLTR---INATQGLVTLTLTPLK----------------- 52
+ DE E + ++ ++ + TP
Sbjct: 153 GEGFDLLVIDEAQEYTEGQESALKYTVTDSDNPMILMCGTPPTLVSGGTVFSKYRDLILS 212
Query: 53 --GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSY---PLHEREARTKGEP 107
+ + ++ I P + R+R ++ + + G
Sbjct: 213 GGKNHNGWAEWSVSEMTNPYDIDAWYKTNPSMGYKLRERAVEEEIGPDETDFNIQRLGYW 272
Query: 108 ILG-SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYV--V 164
+ + ++ D + + G+ +G A + S+ I++ +
Sbjct: 273 VKYNQKSVISKLDWDRLKLTRLPSLVGKLHVGIKYGNDGRNVALSIAVKTLSNRIFIESI 332
Query: 165 KNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMK 217
R + V LK P + DG L Q +R G++
Sbjct: 333 DCQSIRN-GNDWIVDFLKK---TKPISVVIDGASRQDI----LEEQLKRAGIR 377
>gi|195474731|ref|XP_002089643.1| GE22983 [Drosophila yakuba]
gi|194175744|gb|EDW89355.1| GE22983 [Drosophila yakuba]
Length = 599
Score = 35.1 bits (79), Expect = 9.5, Method: Composition-based stats.
Identities = 18/193 (9%), Positives = 40/193 (20%), Gaps = 16/193 (8%)
Query: 20 WFD---EEPPEDVYFEGLTRINATQGLVTLTLTPLK---GRSPIIEH-YLSASSSDRQVI 72
+FD E D + + R N + L P S ++ D V
Sbjct: 101 FFDIQPEYGTLDDFRALIKRANELDLKIILDFVPNHSSDENSWFVKSVNREKGYEDYYVW 160
Query: 73 R---MTINETPHYNEQERKRIID---SYPLHEREARTKGEPILGSGRIFPIVEEDIVINS 126
+ + + +R+ + + + +
Sbjct: 161 HDGKVNASTGERQPPSNWLQAFRGSAWEWNEKRQQYYLHQFAVQQADLNYRNPLVV--EQ 218
Query: 127 LDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGK 186
+ + G+ G+ D+D Y + +
Sbjct: 219 MKRVLRYWLDLGVA-GFRCDAVPVLFEIEPDADGQYADEEVSGLTDDVDDRKYLKSDLIE 277
Query: 187 WLPWAWPHDGLQH 199
P
Sbjct: 278 NRPETIDMAYQWR 290
>gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
Length = 437
Score = 35.1 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 15/169 (8%), Positives = 36/169 (21%), Gaps = 11/169 (6%)
Query: 7 GRDKWQSNTVHYVWFDEEPPE----DVYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYL 62
+ + + W DE + + + + L T + P++ +
Sbjct: 139 DPEGLRGPQFSHGWADEIAKWASGEAAWHNLMMGMRLGRDPRVLVTTTPRPV-PLVRSLV 197
Query: 63 SASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHER--EARTKGE-PILGSGRIFPIVE 119
+ D V R + + + R GE G ++
Sbjct: 198 ARDGDDVVVTRGRTADNEANLAPGFVAAMTAGYGGTRLGRQELDGELIEEVEGALWTRAL 257
Query: 120 EDIVINSLDIPEHWVQIGGMD---FGWHHPFAAGHLVWNRDSDVIYVVK 165
+ + +D D +
Sbjct: 258 IEQCRVVHVPGVLTRVVVAVDPPASVGGDACGIVVAGMGGDGRAYVIAD 306
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.311 0.125 0.309
Lambda K H
0.267 0.0378 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,299,451,417
Number of Sequences: 13984884
Number of extensions: 32664975
Number of successful extensions: 157496
Number of sequences better than 10.0: 1366
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 753
Number of HSP's that attempted gapping in prelim test: 155441
Number of HSP's gapped (non-prelim): 1402
length of query: 251
length of database: 4,792,584,752
effective HSP length: 136
effective length of query: 115
effective length of database: 2,890,640,528
effective search space: 332423660720
effective search space used: 332423660720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 79 (35.2 bits)