RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.1079_1
(251 letters)
>gnl|CDD|150434 pfam09763, Sec3, Exocyst complex component Sec3. This entry is the
conserved middle and C-terminus of the Sec3 protein.
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1
(glycine transporter protein 1). Sec3 is the exocyst
component that is closest to the plasma membrane docking
site and it serves as a spatial landmark in the plasma
membrane for incoming secretory vesicles. Sec3 is
recruited to the sites of polarized membrane growth
through its interaction with Rho1p, a small GTP-binding
protein.
Length = 690
Score = 28.1 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 56 PIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDSYPLHE 98
+IE + V I+ Y++Q K+++ SY E
Sbjct: 593 KLIEFVEGVEALLATVPAEEISRQAAYSKQALKKVLKSYTAKE 635
>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 761
Score = 27.8 bits (62), Expect = 2.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 122 IVINSLDIP------EHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNY 167
I +N L +P + + IG FGWHH A + W + V Y + Y
Sbjct: 522 IDLNQLPVPQATITNQKYRAIGLGTFGWHHLLALKGIAWESEEAVQYADELY 573
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 205 EQLSAQYRRQGMKML-PECATFDDGSN 230
E +S Q + M ML P CA+FD N
Sbjct: 396 ESISPQLKSGDMVMLSPACASFDQFKN 422
>gnl|CDD|179797 PRK04235, PRK04235, hypothetical protein; Provisional.
Length = 196
Score = 26.8 bits (60), Expect = 6.0
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 22/76 (28%)
Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFG-WHHPFAAGHLVWNRDSDVIYVVKNYRC 169
SGRI I+E ++ P + G WHHP +V+ +K +
Sbjct: 48 SGRI-GIIEAEM-------PSKGDKKNSRWLGKWHHPVTP--------EEVLEALKKKQV 91
Query: 170 RE-----QTPIFHVAA 180
Q PI HVAA
Sbjct: 92 GRLWLIVQGPILHVAA 107
>gnl|CDD|150740 pfam10100, DUF2338, Uncharacterized protein conserved in bacteria
(DUF2338). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 429
Score = 26.6 bits (59), Expect = 6.1
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRI-NATQGLV--TLTLTPLKGRSPII 58
K Y W + + V D Y++ L +I T V + ++P G + ++
Sbjct: 75 KDYATIVGDWDT-LILAV------TADAYYDVLQQIPWETLKRVKCVILISPTFGSNLLV 127
Query: 59 EHYLSASSSDRQVI 72
+++L+A + D +VI
Sbjct: 128 QNFLNALNKDAEVI 141
>gnl|CDD|182572 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 26.3 bits (58), Expect = 8.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 81 HYNEQERKRIIDSYPLH---EREARTKGEPILGSGRIFPIVEEDIVINSLDIPE 131
H EQ K I S +H + ART+ SG I +V DI LDI E
Sbjct: 260 HLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 313
>gnl|CDD|184719 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional.
Length = 879
Score = 26.1 bits (58), Expect = 9.0
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 12/38 (31%)
Query: 188 LPWAWPHDG------------LQHDKRSGEQLSAQYRR 213
LP WP DG L D E L+ Y R
Sbjct: 337 LPEDWPVDGTTGYDFLNQVNGLLVDPAGEEPLTELYAR 374
>gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation.
Length = 343
Score = 26.1 bits (58), Expect = 9.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 89 RIIDSYPLHEREA 101
RIID +P E++
Sbjct: 238 RIIDVFPAEEQDQ 250
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 26.1 bits (58), Expect = 9.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 205 EQLSAQYRRQGMKMLPECATFD 226
+++S + R+QGMKM+ + D
Sbjct: 231 DKVSNRMRQQGMKMVSASSISD 252
>gnl|CDD|162762 TIGR02208, lipid_A_msbB, lipid A biosynthesis
(KDO)2-(lauroyl)-lipid IVA acyltransferase. This
family consists of MsbB in E. coli and closely related
proteins in other species. MsbB is homologous to HtrB
(TIGR02207) and acts immediately after it in the
biosynthesis of KDO-2 lipid A (also called Re LPS and
Re endotoxin). These two enzymes act after creation of
KDO-2 lipid IV-A by addition of the KDO sugars.
Length = 305
Score = 25.9 bits (57), Expect = 9.9
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 43 LVTLTLTPLKGRSPIIEHY--LSASSSDRQVIRMTINET---PHYNEQERKRIID 92
LV L P K R PI + + + R IN + P +E ER+ IID
Sbjct: 24 LVLLAFMPAKLRDPIAKVLAKFVGPIAKKPRGRARINLSACFPEKSEAERETIID 78
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.444
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,352,359
Number of extensions: 274480
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 16
Length of query: 251
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,028,145
Effective search space: 644503200
Effective search space used: 644503200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)