RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.1079_1
(251 letters)
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral
protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB:
2wc9_A
Length = 212
Score = 58.6 bits (141), Expect = 1e-09
Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 12/139 (8%)
Query: 109 LGSGRIF--PIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVK 165
LGSG + + E+ +I ++ G+DFG+ P A +++ + IY +
Sbjct: 23 LGSGVVPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDKRKNRIYAID 82
Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
+ + ++ + A G+ +
Sbjct: 83 ELVDHKVSLKRTADFVRKNKYESARIIADSS------EPRSIDALKLEHGINRIEGA--- 133
Query: 226 DDGSNGVEAGISDMLDRMR 244
G + VE G + +
Sbjct: 134 KKGPDSVEHGERWLDELDA 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 42.6 bits (100), Expect = 8e-05
Identities = 62/358 (17%), Positives = 100/358 (27%), Gaps = 153/358 (42%)
Query: 2 KAYEQGRD--KWQSNTVHYVWFDEEPPED------VYFE--GLTRINATQGLVT---LTL 48
K + QG + +W N P +D + G+ ++ +VT L
Sbjct: 207 KVFTQGLNILEWLENP------SNTPDKDYLLSIPISCPLIGVIQL--AHYVVTAKLLGF 258
Query: 49 TPLKGRSPIIEHYLSASSSDRQ--VIRMTINET---PHYNEQERK----------RIIDS 93
TP + RS YL ++ Q V + I ET + RK R ++
Sbjct: 259 TPGELRS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 94 YP--------LHEREARTKGEP-----ILGSGRIFPIVEEDI-VINSLDIPE--HWVQIG 137
YP L + +G P I + V++ + NS +P V+I
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNS-HLPAGKQ-VEIS 369
Query: 138 GMDFGWHHPFAAGHLVWNRDSDVIYVVK---------NYRCRE--------QT------- 173
LV + VV N R+ Q+
Sbjct: 370 --------------LVNGAKN---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 174 ---------PI---FH-------VAALKS--WGKWLPWAWPHDGLQ---HDKRSGEQLSA 209
P+ FH + + + D +Q +D G L
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKD-IQIPVYDTFDGSDL-- 468
Query: 210 QYRRQGMKMLP-------------ECAT-F------DDGSNGVEAGISDMLDRMRSGR 247
R + E T F D G G +G+ + R + G
Sbjct: 469 --RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-SGLGVLTHRNKDGT 523
Score = 29.1 bits (65), Expect = 1.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 71 VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
VI +N T H+ ++ KRI ++Y E G+ L + +IF + E
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK--LKTEKIFKEINE 1712
Score = 27.2 bits (60), Expect = 3.4
Identities = 45/326 (13%), Positives = 82/326 (25%), Gaps = 160/326 (49%)
Query: 1 LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
L +E + N +H + A + L+ T L +I++
Sbjct: 88 LTEFE--NCYLEGNDIHAL-------------------AAK-LLQENDTTLVKTKELIKN 125
Query: 61 YLSA------------------SSSDRQVIRMTI------NETPHYNEQERKRIIDSYPL 96
Y++A + + + I + Y E E + + +Y
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD--YFE-ELRDLYQTYH- 181
Query: 97 HEREARTKGEPILGSGRIFPIVEEDIV------INSL-----DIPEHWVQIGGMDF-GW- 143
+V D++ ++ L D + + Q G++ W
Sbjct: 182 -------------------VLV-GDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWL 219
Query: 144 HHPFAAGHLVWNRDS--DVIYVVK--------------NYR--CR--EQTP-----IF-- 176
+P + D Y++ +Y + TP
Sbjct: 220 ENP----------SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 177 ---H---------VAALKSWG----------KWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
H +A SW L + G+ R + Y
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI----GV----RC--YEA--YPNT 317
Query: 215 GMKMLPECATFDDGSNGVEAGISDML 240
LP D N E S ML
Sbjct: 318 ---SLPPSILEDSLENN-EGVPSPML 339
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 31.9 bits (71), Expect = 0.16
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 132 HWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
W+ G G +VI V NYR
Sbjct: 101 VWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYR 137
>1p0i_A Cholinesterase; serine hydrolase, butyrate; HET: NAG FUC MES; 2.00A
{Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A*
1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A*
3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2j4c_A* 2wig_A* 2wid_A*
2wil_A*
Length = 529
Score = 31.9 bits (71), Expect = 0.16
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
W+ GG G R VI V NYR
Sbjct: 112 WIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYR 147
>3a58_A Exocyst complex component SEC3; protein complex, PH domain,
GTPase, membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 31.1 bits (70), Expect = 0.23
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 38 NATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDS 93
N +QG V + P+ G + + +S +S+ Q T N E++RK II+
Sbjct: 41 NVSQGAVPSSAPPVSGGNYSHKRNVSRASNSSQ----TSNFLAEQYERDRKAIINC 92
>1ea5_A Acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter
cleavage, catalytic triad, alpha/beta hydrolase; HET:
NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB:
1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A*
1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A
1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ...
Length = 537
Score = 30.3 bits (67), Expect = 0.43
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
W+ GG G +V+ V +YR
Sbjct: 114 WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYR 149
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl
diphosphate, magnesium, cyclization, lyase; HET: FPF;
1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A*
3cke_A*
Length = 320
Score = 30.1 bits (67), Expect = 0.52
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
P + + L + D + S E+ SA + + D S VE
Sbjct: 69 PKALDDRIHFACRLLTVLFLIDD-LLEYMSFEEGSAYNEKLIPISRGDVLP--DRSIPVE 125
Query: 234 AGISDMLDRMR 244
I D+ + MR
Sbjct: 126 YIIYDLWESMR 136
>1dx4_A Acetylcholinesterase; hydrolase (serine esterase), hydrolase,
serine esterase, synapse, membrane, nerve, muscle,
signal; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 30.0 bits (66), Expect = 0.59
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
W+ GG G + +VI YR
Sbjct: 146 WIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYR 181
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta-
lactamase cleavage reaction, LEXA repressor, lambda CI;
2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A
1ay9_A
Length = 116
Score = 28.0 bits (62), Expect = 1.9
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN---RDSDVIYVVKNYRCRE 171
FP D V +D+ + +Q + A+G + + D D++ V
Sbjct: 2 FPSPAADYVEQRIDLNQLLIQHPSATYFVK---ASGDSMIDGGISDGDLLIVDSAITASH 58
Query: 172 Q 172
Sbjct: 59 G 59
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus
influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A*
1f74_A* 1f7b_A*
Length = 293
Score = 27.7 bits (61), Expect = 2.7
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 41 QGLVTLTLTPLK--------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIID 92
+G+ + L G II H + D + + E + +E+K I
Sbjct: 5 KGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR 64
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; NMR {Escherichia coli} SCOP:
d.224.1.1
Length = 155
Score = 27.1 bits (60), Expect = 3.6
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 19 VWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSP 56
VW E+ ++F G + +GL+ + LT ++G++
Sbjct: 65 VWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTA 104
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily,
deoxynivalenol, acetyl COA, fusarium; HET: COA MPO ZBA;
1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A*
2zba_A*
Length = 451
Score = 27.1 bits (59), Expect = 4.2
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
P+ AG + S+ E P V L
Sbjct: 52 AVPWVAGQVKAEGISEGNTGTSFIVPFEDVPRVVVKDL 89
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: FMN;
2.30A {Streptococcus mutans UA159} SCOP: d.90.1.1
Length = 208
Score = 26.3 bits (57), Expect = 6.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 120 EDIVINSLDIPEHWVQIGGMDFGW 143
+ V D+P +W + FG
Sbjct: 155 DAQVAEKYDLPTNWKMRAQIPFGS 178
>2wqf_A Copper induced nitroreductase D; COPR regulated protein,
oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Length = 202
Score = 26.3 bits (57), Expect = 6.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW 143
+ + ++ V ++PE W G + FG
Sbjct: 153 YNPLIDEAVAKEWNLPESWKLRGQLVFGS 181
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 26.2 bits (57), Expect = 7.8
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 32 EGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERK 88
E L +N TQ L +TP+ P + L + R T+ P K
Sbjct: 3 ESLRPVNLTQERNILPMTPVWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNK 59
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.137 0.444
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,446,461
Number of extensions: 114695
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 26
Length of query: 251
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 161
Effective length of database: 3,511,270
Effective search space: 565314470
Effective search space used: 565314470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)