RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1079_1
         (251 letters)



>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus [TaxId: 274]}
          Length = 276

 Score = 27.7 bits (61), Expect = 1.00
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 94  YPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153
             +   +A T G  +    R  PI EE +        +        D      +  G   
Sbjct: 172 IDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEP 231

Query: 154 WNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185
              +  V  + K     + TP+F  +ALK+ G
Sbjct: 232 -TEEELVAAIRKGTIDLKITPVFLGSALKNKG 262


>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260
           {Streptococcus mutans [TaxId: 1309]}
          Length = 199

 Score = 25.9 bits (56), Expect = 3.2
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW 143
           +  + +  V    D+P +W     + FG 
Sbjct: 149 YNPLVDAQVAEKYDLPTNWKMRAQIPFGS 177


>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
           amyloderamosa [TaxId: 32043]}
          Length = 475

 Score = 25.4 bits (54), Expect = 4.8
 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 6/133 (4%)

Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180
           D+      I  +  Q+GG   GW            +  + +  +  Y  ++       + 
Sbjct: 269 DLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSN 328

Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN------GVEA 234
           L       PW   +    HD  + + + +       +  P   +    S       G+ A
Sbjct: 329 LFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSA 388

Query: 235 GISDMLDRMRSGR 247
           G    +D+ R+ R
Sbjct: 389 GTGAAVDQRRAAR 401


>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844
           {Bacillus cereus [TaxId: 1396]}
          Length = 199

 Score = 25.2 bits (54), Expect = 6.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 120 EDIVINSLDIPEHWVQIGGMDFGW 143
           +  V  + +IP  W  +G M FG 
Sbjct: 156 DAEVKETWNIPAEWSLVGQMPFGE 179


>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH
           {Escherichia coli [TaxId: 562]}
          Length = 189

 Score = 24.6 bits (53), Expect = 8.5
 Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 10/67 (14%)

Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS 203
                A  L++N     + +++ +R           A    G              D   
Sbjct: 41  DRGNGATILLYNTKKKTVVLIRQFR----------VATWVNGNESGQLIESCAGLLDNDE 90

Query: 204 GEQLSAQ 210
            E    +
Sbjct: 91  PEVCIRK 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,055,214
Number of extensions: 49359
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 10
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)