RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.1079_1 (251 letters) >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 Score = 27.7 bits (61), Expect = 1.00 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%) Query: 94 YPLHEREARTKGEPILGSGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLV 153 + +A T G + R PI EE + + D + G Sbjct: 172 IDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEP 231 Query: 154 WNRDSDVIYVVKNYRCREQTPIFHVAALKSWG 185 + V + K + TP+F +ALK+ G Sbjct: 232 -TEEELVAAIRKGTIDLKITPVFLGSALKNKG 262 >d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]} Length = 199 Score = 25.9 bits (56), Expect = 3.2 Identities = 6/29 (20%), Positives = 12/29 (41%) Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW 143 + + + V D+P +W + FG Sbjct: 149 YNPLVDAQVAEKYDLPTNWKMRAQIPFGS 177 >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 Score = 25.4 bits (54), Expect = 4.8 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 6/133 (4%) Query: 121 DIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAA 180 D+ I + Q+GG GW + + + + Y ++ + Sbjct: 269 DLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSN 328 Query: 181 LKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSN------GVEA 234 L PW + HD + + + + + P + S G+ A Sbjct: 329 LFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSA 388 Query: 235 GISDMLDRMRSGR 247 G +D+ R+ R Sbjct: 389 GTGAAVDQRRAAR 401 >d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]} Length = 199 Score = 25.2 bits (54), Expect = 6.3 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 120 EDIVINSLDIPEHWVQIGGMDFGW 143 + V + +IP W +G M FG Sbjct: 156 DAEVKETWNIPAEWSLVGQMPFGE 179 >d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} Length = 189 Score = 24.6 bits (53), Expect = 8.5 Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 10/67 (14%) Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRS 203 A L++N + +++ +R A G D Sbjct: 41 DRGNGATILLYNTKKKTVVLIRQFR----------VATWVNGNESGQLIESCAGLLDNDE 90 Query: 204 GEQLSAQ 210 E + Sbjct: 91 PEVCIRK 97 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.137 0.444 Gapped Lambda K H 0.267 0.0482 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,055,214 Number of extensions: 49359 Number of successful extensions: 103 Number of sequences better than 10.0: 1 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 10 Length of query: 251 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,268,006 Effective search space: 213025008 Effective search space used: 213025008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.4 bits)