HHsearch alignment for GI: peg_1080 and conserved domain: pfam03237
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=92.76 E-value=0.22 Score=29.67 Aligned_cols=47 Identities=28% Similarity=0.242 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 9521021247889999998638998501754555772799941453257876566650
Q 537021.9.peg.1 1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLL 58 (110)
Q Consensus 1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~Ll 58 (110)
T Consensus 3 ~ggr~~GKT~~~~~~~~~~a~~~~~~-----------~~~i~~~t~~~~~~~~~~~~~ 49 (380)
T pfam03237 3 LGSRQSGKTFAFAREALRHALGNGPK-----------NQIILSASKAQARLEFKKGII 49 (380)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCC-----------CEEEEECCHHHHHHHHHHHHH
T ss_conf 26452528399999999999858997-----------289997999999999999999