Query         537021.9.peg.1080_1
Match_columns 110
No_of_seqs    50 out of 52
Neff          3.6 
Searched_HMMs 33803
Date          Wed May 25 06:11:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1080.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1w36_B RECB, exodeoxyribonucl  32.8      41  0.0012   16.0   4.7   52    5-57     26-77  (243)
  2 >3c6f_A YETF protein; uncharac  23.2      61  0.0018   15.0   3.0   44   66-109    29-72  (81)
  3 >3bu8_A Telomeric repeat-bindi  19.0      59  0.0017   15.1   1.7   17   47-64     36-52  (95)
  4 >2d6f_A Glutamyl-tRNA(Gln) ami  14.5      83  0.0025   14.2   1.5   23   87-109    41-63  (81)
  5 >1gcq_C VAV proto-oncogene; SH  13.3      85  0.0025   14.1   1.3   17   25-41     44-60  (70)
  6 >1zq1_A Glutamyl-tRNA(Gln) ami  12.5      93  0.0028   13.9   1.3   21   88-108    42-62  (82)
  7 >1yn8_A NBP2, NAP1-binding pro  12.1      91  0.0027   14.0   1.1   17   25-41     34-50  (59)
  8 >1t3l_A Dihydropyridine-sensit  12.0      93  0.0028   13.9   1.2   17   25-41     78-95  (141)
  9 >2hzl_A Trap-T family sorbitol  11.6      61  0.0018   15.0   0.1    7   24-30    187-193 (253)
 10 >3bz1_B Photosystem II core li  11.2      78  0.0023   14.4   0.6    8   17-24     22-29  (87)

No 1  
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443)
Probab=32.79  E-value=41  Score=15.98  Aligned_cols=52  Identities=21%  Similarity=-0.038  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             02124788999999863899850175455577279994145325787656665
Q 537021.9.peg.1    5 QLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLL   57 (110)
Q Consensus         5 r~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~L   57 (110)
                      =.|||++-+. .+.+|.-.-+.+....+-..|-+..+.+.|+.....+..+..
T Consensus        26 GTGKT~tl~~-~i~~ll~~~~~~~~~~~~~~~~~IL~~t~tn~A~~~i~~rl~   77 (243)
T 1w36_B           26 GTGKTFTIAA-LYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR   77 (243)
T ss_dssp             TSCHHHHHHH-HHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHCCCCCCCCCCCCCHHHEEEECHHHHHHHHHHHHHH
T ss_conf             3048899999-999998417644334579996068675668899999999999


No 2  
>>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} (A:1-81)
Probab=23.25  E-value=61  Score=14.97  Aligned_cols=44  Identities=11%  Similarity=0.033  Sum_probs=38.2

Q ss_pred             CCCCCCCCHHHHCCCEECCCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf             23665035777500145379999702699997058813789870
Q 537021.9.peg.1   66 QQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDIGFIIES  109 (110)
Q Consensus        66 ~~GtG~IP~~~I~~ttr~~Gvpnavd~v~VrH~SGg~~~~~~~s  109 (110)
                      .+-.--|..+.+...-|..|+.+.-+.-.+--.+.|.+|++.|+
T Consensus        29 ~l~~~~it~~dl~~~lR~~gi~~l~~V~~aiLE~~G~iSVi~k~   72 (81)
T 3c6f_A           29 VMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKS   72 (81)
T ss_dssp             HHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEECG
T ss_pred             HHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEECCCCEEEEECC
T ss_conf             99784999999999999749999888008899279988999847


No 3  
>>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} (A:1-49,A:190-235)
Probab=18.97  E-value=59  Score=15.06  Aligned_cols=17  Identities=35%  Similarity=0.454  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHCCCCCCC
Q ss_conf             257876566650464685
Q 537021.9.peg.1   47 ELTRDGIQRLLLGEPMSP   64 (110)
Q Consensus        47 E~tRDivQ~~LlG~~~~~   64 (110)
                      -.-|||+|..|+ +|+.+
T Consensus        36 ~qiRDImqalLV-RPd~e   52 (95)
T 3bu8_A           36 RQIRDIMQALLV-RPDAE   52 (95)
T ss_dssp             HHHHHHHHHHTT-SCCCC
T ss_pred             HHHHHHHHHHHH-CCCCC
T ss_conf             999999999983-54562


No 4  
>>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (A:1-81)
Probab=14.49  E-value=83  Score=14.18  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=18.8

Q ss_pred             CCCCEEEEEEEECCCCEEEEEEE
Q ss_conf             99702699997058813789870
Q 537021.9.peg.1   87 AGAYSTVTVRHLSGRDIGFIIES  109 (110)
Q Consensus        87 pnavd~v~VrH~SGg~~~~~~~s  109 (110)
                      .+--|+++||-.+|=|+||.+..
T Consensus        41 ~~~~d~iViKLdnGYNvGi~~~~   63 (81)
T 2d6f_A           41 DADDRHIVLKLENGYNIGVEISD   63 (81)
T ss_dssp             TSCSSEEEEECTTSCEEEEECTT
T ss_pred             CCCCCEEEEECCCCCEEEEEHHH
T ss_conf             78999899993787117656125


No 5  
>>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} (C:)
Probab=13.30  E-value=85  Score=14.14  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=8.1

Q ss_pred             CCCCCCEEECCCCEEEE
Q ss_conf             85017545557727999
Q 537021.9.peg.1   25 PSWWRGYRFLQPIVMVA   41 (110)
Q Consensus        25 P~WW~G~RF~~Pi~aWa   41 (110)
                      ++||+|++-..--+.|.
T Consensus        44 ~~Ww~g~~~~~g~~G~v   60 (70)
T 1gcq_C           44 HNWWEGRNTATNEVGWF   60 (70)
T ss_dssp             CSEEEEEETTTTEEEEE
T ss_pred             HCHHHCCCCCCCCCCEE
T ss_conf             13331556432423505


No 6  
>>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (A:1-82)
Probab=12.53  E-value=93  Score=13.90  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=17.8

Q ss_pred             CCCEEEEEEEECCCCEEEEEE
Q ss_conf             970269999705881378987
Q 537021.9.peg.1   88 GAYSTVTVRHLSGRDIGFIIE  108 (110)
Q Consensus        88 navd~v~VrH~SGg~~~~~~~  108 (110)
                      .--|++++|-.+|=|+||.+.
T Consensus        42 s~~d~iViKLdnGYNvGi~~~   62 (82)
T 1zq1_A           42 SAGDTLVLKLENGYNIGIALE   62 (82)
T ss_dssp             CCCSEEEEEETTSCEEEEEGG
T ss_pred             CCCCEEEEECCCCCEEEEEHH
T ss_conf             899989999268810530378


No 7  
>>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} (A:)
Probab=12.07  E-value=91  Score=13.96  Aligned_cols=17  Identities=6%  Similarity=-0.007  Sum_probs=7.3

Q ss_pred             CCCCCCEEECCCCEEEE
Q ss_conf             85017545557727999
Q 537021.9.peg.1   25 PSWWRGYRFLQPIVMVA   41 (110)
Q Consensus        25 P~WW~G~RF~~Pi~aWa   41 (110)
                      ++||+|++-...-..|+
T Consensus        34 ~~Ww~~~~~~~g~~G~~   50 (59)
T 1yn8_A           34 QGWLVAENESGSKTGLV   50 (59)
T ss_dssp             TTEEEEECTTSSCEEEE
T ss_pred             CCEEEEEECCCCCEEEE
T ss_conf             98999996789989999


No 8  
>>1t3l_A Dihydropyridine-sensitive L-type, calcium channel beta-2 subunit; protein-peptide complex, SH3 domain, guanylate kinase domain; 2.20A {Oryctolagus cuniculus} (A:1-141)
Probab=12.05  E-value=93  Score=13.89  Aligned_cols=17  Identities=18%  Similarity=0.360  Sum_probs=0.0

Q ss_pred             CCCCCCEEEC-CCCEEEE
Q ss_conf             8501754555-7727999
Q 537021.9.peg.1   25 PSWWRGYRFL-QPIVMVA   41 (110)
Q Consensus        25 P~WW~G~RF~-~Pi~aWa   41 (110)
                      .+||.|+..+ ..-..|.
T Consensus        78 ~~Ww~g~~~~~~g~~G~v   95 (141)
T 1t3l_A           78 NDWWIGRLVKEGCEIGFI   95 (141)
T ss_dssp             SSEEEEEESSTTCCCEEE
T ss_pred             CCEEEEEECCCCCCCCCC
T ss_conf             876667873788866636


No 9  
>>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A (A:1-167,A:216-301)
Probab=11.57  E-value=61  Score=14.97  Aligned_cols=7  Identities=71%  Similarity=2.433  Sum_probs=0.0

Q ss_pred             CCCCCCC
Q ss_conf             9850175
Q 537021.9.peg.1   24 YPSWWRG   30 (110)
Q Consensus        24 YP~WW~G   30 (110)
                      ||.||++
T Consensus       187 ~pg~~~~  193 (253)
T 2hzl_A          187 YPGWWEG  193 (253)
T ss_dssp             ECBTTCS
T ss_pred             CCCCCCC
T ss_conf             2886656


No 10 
>>3bz1_B Photosystem II core light harvesting protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3a0b_B* 3a0h_B* 1izl_B* (B:134-220)
Probab=11.20  E-value=78  Score=14.35  Aligned_cols=8  Identities=50%  Similarity=1.070  Sum_probs=0.0

Q ss_pred             HHHHHCCC
Q ss_conf             99863899
Q 537021.9.peg.1   17 AMHLSGCY   24 (110)
Q Consensus        17 A~HlTG~Y   24 (110)
                      |+|+||.|
T Consensus        22 afH~tg~~   29 (87)
T 3bz1_B           22 AFHLTGLF   29 (87)
T ss_dssp             HHTTTSTT
T ss_pred             HHHHHHCC
T ss_conf             99851010


Done!