Query 537021.9.peg.1080_1 Match_columns 110 No_of_seqs 50 out of 52 Neff 3.6 Searched_HMMs 33803 Date Wed May 25 06:11:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1080.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1w36_B RECB, exodeoxyribonucl 32.8 41 0.0012 16.0 4.7 52 5-57 26-77 (243) 2 >3c6f_A YETF protein; uncharac 23.2 61 0.0018 15.0 3.0 44 66-109 29-72 (81) 3 >3bu8_A Telomeric repeat-bindi 19.0 59 0.0017 15.1 1.7 17 47-64 36-52 (95) 4 >2d6f_A Glutamyl-tRNA(Gln) ami 14.5 83 0.0025 14.2 1.5 23 87-109 41-63 (81) 5 >1gcq_C VAV proto-oncogene; SH 13.3 85 0.0025 14.1 1.3 17 25-41 44-60 (70) 6 >1zq1_A Glutamyl-tRNA(Gln) ami 12.5 93 0.0028 13.9 1.3 21 88-108 42-62 (82) 7 >1yn8_A NBP2, NAP1-binding pro 12.1 91 0.0027 14.0 1.1 17 25-41 34-50 (59) 8 >1t3l_A Dihydropyridine-sensit 12.0 93 0.0028 13.9 1.2 17 25-41 78-95 (141) 9 >2hzl_A Trap-T family sorbitol 11.6 61 0.0018 15.0 0.1 7 24-30 187-193 (253) 10 >3bz1_B Photosystem II core li 11.2 78 0.0023 14.4 0.6 8 17-24 22-29 (87) No 1 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443) Probab=32.79 E-value=41 Score=15.98 Aligned_cols=52 Identities=21% Similarity=-0.038 Sum_probs=42.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHH Q ss_conf 02124788999999863899850175455577279994145325787656665 Q 537021.9.peg.1 5 QLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLL 57 (110) Q Consensus 5 r~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~L 57 (110) =.|||++-+. .+.+|.-.-+.+....+-..|-+..+.+.|+.....+..+.. T Consensus 26 GTGKT~tl~~-~i~~ll~~~~~~~~~~~~~~~~~IL~~t~tn~A~~~i~~rl~ 77 (243) T 1w36_B 26 GTGKTFTIAA-LYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77 (243) T ss_dssp TSCHHHHHHH-HHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHH T ss_pred CCHHHHHHHH-HHHHHHHCCCCCCCCCCCCCHHHEEEECHHHHHHHHHHHHHH T ss_conf 3048899999-999998417644334579996068675668899999999999 No 2 >>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis} (A:1-81) Probab=23.25 E-value=61 Score=14.97 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=38.2 Q ss_pred CCCCCCCCHHHHCCCEECCCCCCCCEEEEEEEECCCCEEEEEEE Q ss_conf 23665035777500145379999702699997058813789870 Q 537021.9.peg.1 66 QQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDIGFIIES 109 (110) Q Consensus 66 ~~GtG~IP~~~I~~ttr~~Gvpnavd~v~VrH~SGg~~~~~~~s 109 (110) .+-.--|..+.+...-|..|+.+.-+.-.+--.+.|.+|++.|+ T Consensus 29 ~l~~~~it~~dl~~~lR~~gi~~l~~V~~aiLE~~G~iSVi~k~ 72 (81) T 3c6f_A 29 VMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKS 72 (81) T ss_dssp HHHHTTCCHHHHHHHHHHTTCCSGGGEEEEEECTTSCEEEEECG T ss_pred HHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEECCCCEEEEECC T ss_conf 99784999999999999749999888008899279988999847 No 3 >>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} (A:1-49,A:190-235) Probab=18.97 E-value=59 Score=15.06 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHCCCCCCC Q ss_conf 257876566650464685 Q 537021.9.peg.1 47 ELTRDGIQRLLLGEPMSP 64 (110) Q Consensus 47 E~tRDivQ~~LlG~~~~~ 64 (110) -.-|||+|..|+ +|+.+ T Consensus 36 ~qiRDImqalLV-RPd~e 52 (95) T 3bu8_A 36 RQIRDIMQALLV-RPDAE 52 (95) T ss_dssp HHHHHHHHHHTT-SCCCC T ss_pred HHHHHHHHHHHH-CCCCC T ss_conf 999999999983-54562 No 4 >>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} (A:1-81) Probab=14.49 E-value=83 Score=14.18 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=18.8 Q ss_pred CCCCEEEEEEEECCCCEEEEEEE Q ss_conf 99702699997058813789870 Q 537021.9.peg.1 87 AGAYSTVTVRHLSGRDIGFIIES 109 (110) Q Consensus 87 pnavd~v~VrH~SGg~~~~~~~s 109 (110) .+--|+++||-.+|=|+||.+.. T Consensus 41 ~~~~d~iViKLdnGYNvGi~~~~ 63 (81) T 2d6f_A 41 DADDRHIVLKLENGYNIGVEISD 63 (81) T ss_dssp TSCSSEEEEECTTSCEEEEECTT T ss_pred CCCCCEEEEECCCCCEEEEEHHH T ss_conf 78999899993787117656125 No 5 >>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} (C:) Probab=13.30 E-value=85 Score=14.14 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=8.1 Q ss_pred CCCCCCEEECCCCEEEE Q ss_conf 85017545557727999 Q 537021.9.peg.1 25 PSWWRGYRFLQPIVMVA 41 (110) Q Consensus 25 P~WW~G~RF~~Pi~aWa 41 (110) ++||+|++-..--+.|. T Consensus 44 ~~Ww~g~~~~~g~~G~v 60 (70) T 1gcq_C 44 HNWWEGRNTATNEVGWF 60 (70) T ss_dssp CSEEEEEETTTTEEEEE T ss_pred HCHHHCCCCCCCCCCEE T ss_conf 13331556432423505 No 6 >>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (A:1-82) Probab=12.53 E-value=93 Score=13.90 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.8 Q ss_pred CCCEEEEEEEECCCCEEEEEE Q ss_conf 970269999705881378987 Q 537021.9.peg.1 88 GAYSTVTVRHLSGRDIGFIIE 108 (110) Q Consensus 88 navd~v~VrH~SGg~~~~~~~ 108 (110) .--|++++|-.+|=|+||.+. T Consensus 42 s~~d~iViKLdnGYNvGi~~~ 62 (82) T 1zq1_A 42 SAGDTLVLKLENGYNIGIALE 62 (82) T ss_dssp CCCSEEEEEETTSCEEEEEGG T ss_pred CCCCEEEEECCCCCEEEEEHH T ss_conf 899989999268810530378 No 7 >>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} (A:) Probab=12.07 E-value=91 Score=13.96 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=7.3 Q ss_pred CCCCCCEEECCCCEEEE Q ss_conf 85017545557727999 Q 537021.9.peg.1 25 PSWWRGYRFLQPIVMVA 41 (110) Q Consensus 25 P~WW~G~RF~~Pi~aWa 41 (110) ++||+|++-...-..|+ T Consensus 34 ~~Ww~~~~~~~g~~G~~ 50 (59) T 1yn8_A 34 QGWLVAENESGSKTGLV 50 (59) T ss_dssp TTEEEEECTTSSCEEEE T ss_pred CCEEEEEECCCCCEEEE T ss_conf 98999996789989999 No 8 >>1t3l_A Dihydropyridine-sensitive L-type, calcium channel beta-2 subunit; protein-peptide complex, SH3 domain, guanylate kinase domain; 2.20A {Oryctolagus cuniculus} (A:1-141) Probab=12.05 E-value=93 Score=13.89 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=0.0 Q ss_pred CCCCCCEEEC-CCCEEEE Q ss_conf 8501754555-7727999 Q 537021.9.peg.1 25 PSWWRGYRFL-QPIVMVA 41 (110) Q Consensus 25 P~WW~G~RF~-~Pi~aWa 41 (110) .+||.|+..+ ..-..|. T Consensus 78 ~~Ww~g~~~~~~g~~G~v 95 (141) T 1t3l_A 78 NDWWIGRLVKEGCEIGFI 95 (141) T ss_dssp SSEEEEEESSTTCCCEEE T ss_pred CCEEEEEECCCCCCCCCC T ss_conf 876667873788866636 No 9 >>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A (A:1-167,A:216-301) Probab=11.57 E-value=61 Score=14.97 Aligned_cols=7 Identities=71% Similarity=2.433 Sum_probs=0.0 Q ss_pred CCCCCCC Q ss_conf 9850175 Q 537021.9.peg.1 24 YPSWWRG 30 (110) Q Consensus 24 YP~WW~G 30 (110) ||.||++ T Consensus 187 ~pg~~~~ 193 (253) T 2hzl_A 187 YPGWWEG 193 (253) T ss_dssp ECBTTCS T ss_pred CCCCCCC T ss_conf 2886656 No 10 >>3bz1_B Photosystem II core light harvesting protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3a0b_B* 3a0h_B* 1izl_B* (B:134-220) Probab=11.20 E-value=78 Score=14.35 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=0.0 Q ss_pred HHHHHCCC Q ss_conf 99863899 Q 537021.9.peg.1 17 AMHLSGCY 24 (110) Q Consensus 17 A~HlTG~Y 24 (110) |+|+||.| T Consensus 22 afH~tg~~ 29 (87) T 3bz1_B 22 AFHLTGLF 29 (87) T ss_dssp HHTTTSTT T ss_pred HHHHHHCC T ss_conf 99851010 Done!