Query 537021.9.peg.1080_1 Match_columns 110 No_of_seqs 50 out of 52 Neff 3.6 Searched_HMMs 23785 Date Wed May 25 06:43:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1080.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3cpe_A Terminase, DNA packagin 67.7 5.9 0.00025 20.0 4.2 46 1-57 184-229 (592) 2 1swg_A Circularly permuted cor 67.0 0.24 1E-05 28.2 -3.1 31 14-44 1-47 (128) 3 2o0j_A Terminase, DNA packagin 44.6 19 0.00078 17.1 4.3 47 1-58 184-230 (385) 4 1kjw_A Postsynaptic density pr 36.3 9.3 0.00039 18.9 0.9 10 25-34 39-48 (295) 5 1t3l_A Dihydropyridine-sensiti 32.5 9.5 0.0004 18.8 0.5 11 24-34 77-87 (337) 6 1t0h_A Voltage-gated calcium c 27.3 13 0.00054 18.0 0.4 12 24-35 87-98 (132) 7 2ebv_A Nuclear pore complex pr 15.7 15 0.00064 17.6 -1.2 17 29-45 21-37 (57) 8 2gfu_A DNA mismatch repair pro 13.7 43 0.0018 15.0 0.7 15 22-37 34-48 (134) 9 2pz1_A RHO guanine nucleotide 13.4 74 0.0031 13.6 1.8 19 24-44 62-80 (466) 10 3lh5_A Tight junction protein 13.3 64 0.0027 14.0 1.5 13 25-37 39-51 (251) No 1 >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Probab=67.71 E-value=5.9 Score=20.02 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=36.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHH Q ss_conf 952102124788999999863899850175455577279994145325787656665 Q 537021.9.peg.1 1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLL 57 (110) Q Consensus 1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~L 57 (110) +++-|+|||.+.++++..++. |....+.+..+.+.++.|+++.+.- T Consensus 184 lk~RQ~GKSt~~a~~~l~~al-----------~~~~~~i~ivA~~~~~A~~i~~~ik 229 (592) T 3cpe_A 184 NLSRQLGKTTVVAIFLAHFVC-----------FNKDKAVGILAHKGSMSAEVLDRTK 229 (592) T ss_dssp EECSSSCHHHHHHHHHHHHHH-----------TSSSCEEEEEESSHHHHHHHHHHHH T ss_pred EECCCCCHHHHHHHHHHHHHH-----------HCCCCEEEEEECCHHHHHHHHHHHH T ss_conf 946988699999999999998-----------2999759999198999999999999 No 2 >1swg_A Circularly permuted core-streptavidin E51/A46; biotin binding protein, circular permutation, signal, biotin, biotin-binding protein; HET: BTN; 1.80A {Streptomyces avidinii} SCOP: b.61.1.1 PDB: 1swf_A* Probab=66.97 E-value=0.24 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=24.0 Q ss_pred HHHHHHHHCCCCCC---------------CC-CEEECCCCEEEEECC Q ss_conf 99999863899850---------------17-545557727999414 Q 537021.9.peg.1 14 AEAAMHLSGCYPSW---------------WR-GYRFLQPIVMVAGSV 44 (110) Q Consensus 14 ~E~A~HlTG~YP~W---------------W~-G~RF~~Pi~aWa~g~ 44 (110) +|--|||||||--| |+ |.+|.+....|.|-- T Consensus 1 ~e~~y~ltGry~~~p~~~G~g~TFGFtV~W~ng~~~~~StTsWtGQC 47 (128) T 1swg_A 1 MESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQY 47 (128) T ss_dssp --CEEEEEEEECSSCCSSSCCEEEEEEEEEECSSCEEEEEEEEEEEE T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEE T ss_conf 98435432040335887899763799999527854453041677887 No 3 >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Probab=44.63 E-value=19 Score=17.10 Aligned_cols=47 Identities=19% Similarity=0.066 Sum_probs=36.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHC Q ss_conf 9521021247889999998638998501754555772799941453257876566650 Q 537021.9.peg.1 1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLL 58 (110) Q Consensus 1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~Ll 58 (110) +++-|+|||.+.++++..++. |.+....++...+.++.+.+..+... T Consensus 184 lKsRQ~GKTT~~a~~~L~~Al-----------f~~~~~i~IiA~k~~~A~~i~~~ik~ 230 (385) T 2o0j_A 184 NLSRQLGKTTVVAIFLAHFVC-----------FNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385) T ss_dssp EECSSSCHHHHHHHHHHHHHH-----------SSSSCEEEEEESSHHHHHHHHHHHHH T ss_pred EECCCCCCCHHHHHHHHHHHH-----------HCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 962668720879999999997-----------26677148861537889999999999 No 4 >1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Probab=36.33 E-value=9.3 Score=18.86 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=6.2 Q ss_pred CCCCCCEEEC Q ss_conf 8501754555 Q 537021.9.peg.1 25 PSWWRGYRFL 34 (110) Q Consensus 25 P~WW~G~RF~ 34 (110) |+||+++|-+ T Consensus 39 ~~wWqa~~~~ 48 (295) T 1kjw_A 39 EEWWQARRVH 48 (295) T ss_dssp SSEEEEEECC T ss_pred CCCEEEEECC T ss_conf 9807999738 No 5 >1t3l_A Dihydropyridine-sensitive L-type, calcium channel beta-2 subunit; protein-peptide complex, SH3 domain, guanylate kinase domain; 2.20A {Oryctolagus cuniculus} SCOP: b.34.2.1 c.37.1.1 PDB: 1t3s_A 1vyv_A 1vyu_A 1vyt_A Probab=32.47 E-value=9.5 Score=18.81 Aligned_cols=11 Identities=27% Similarity=0.752 Sum_probs=7.0 Q ss_pred CCCCCCCEEEC Q ss_conf 98501754555 Q 537021.9.peg.1 24 YPSWWRGYRFL 34 (110) Q Consensus 24 YP~WW~G~RF~ 34 (110) +|+|||+|+.. T Consensus 77 D~~WWqar~~~ 87 (337) T 1t3l_A 77 NNDWWIGRLVK 87 (337) T ss_dssp SSSEEEEEESS T ss_pred CCCHHHEEECC T ss_conf 83045323337 No 6 >1t0h_A Voltage-gated calcium channel subunit BETA2A; SH3 domain, nucleotide kinase like domain, signaling protein; 1.97A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1t0j_A Probab=27.32 E-value=13 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=8.3 Q ss_pred CCCCCCCEEECC Q ss_conf 985017545557 Q 537021.9.peg.1 24 YPSWWRGYRFLQ 35 (110) Q Consensus 24 YP~WW~G~RF~~ 35 (110) -++||+|+.... T Consensus 87 d~~WW~gr~~~~ 98 (132) T 1t0h_A 87 NNDWWIGRLVKE 98 (132) T ss_dssp SSSEEEEEESST T ss_pred CCCCEEEEECCC T ss_conf 888379998168 No 7 >2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=15.72 E-value=15 Score=17.59 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=13.5 Q ss_pred CCEEECCCCEEEEECCC Q ss_conf 75455577279994145 Q 537021.9.peg.1 29 RGYRFLQPIVMVAGSVT 45 (110) Q Consensus 29 ~G~RF~~Pi~aWa~g~t 45 (110) -|-+|.|||--|-.++- T Consensus 21 fgdkfkrpigswecsvc 37 (57) T 2ebv_A 21 FGDKFKRPIGSWECSVC 37 (57) T ss_dssp CCSCCCCCSSSCCCSSS T ss_pred CCCCCCCCCCCEEEEEE T ss_conf 65001575575377789 No 8 >2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Probab=13.71 E-value=43 Score=14.95 Aligned_cols=15 Identities=33% Similarity=1.119 Sum_probs=11.2 Q ss_pred CCCCCCCCCEEECCCC Q ss_conf 8998501754555772 Q 537021.9.peg.1 22 GCYPSWWRGYRFLQPI 37 (110) Q Consensus 22 G~YP~WW~G~RF~~Pi 37 (110) +.|| ||-|+..+.|. T Consensus 34 ~gyP-wWPa~I~~~~~ 48 (134) T 2gfu_A 34 EGYP-WWPSLVYNHPF 48 (134) T ss_dssp TTSC-CEEEECCCCSS T ss_pred CCCC-CCCEEECCCCC T ss_conf 7968-98756527420 No 9 >2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protein; 2.25A {Homo sapiens} PDB: 2dx1_A Probab=13.37 E-value=74 Score=13.59 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=13.1 Q ss_pred CCCCCCCEEECCCCEEEEECC Q ss_conf 985017545557727999414 Q 537021.9.peg.1 24 YPSWWRGYRFLQPIVMVAGSV 44 (110) Q Consensus 24 YP~WW~G~RF~~Pi~aWa~g~ 44 (110) .|+||.|+. .+...|.-+. T Consensus 62 ~~~wW~g~~--~~~~GwfPsn 80 (466) T 2pz1_A 62 NREWWWGRV--ADGEGWFPAS 80 (466) T ss_dssp SSSEEEEEE--TTEEEEEEGG T ss_pred CCCEEEEEE--CCCEEECCHH T ss_conf 798589998--9900131545 No 10 >3lh5_A Tight junction protein ZO-1; SH3-guanylate kinase, intramolecular fold, alternative splicing, cell junction, cell membrane, membrane, phosphoprotein; 2.60A {Homo sapiens} Probab=13.30 E-value=64 Score=13.96 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=9.1 Q ss_pred CCCCCCEEECCCC Q ss_conf 8501754555772 Q 537021.9.peg.1 25 PSWWRGYRFLQPI 37 (110) Q Consensus 25 P~WW~G~RF~~Pi 37 (110) ++||+++|-+... T Consensus 39 ~~wW~a~~v~~~~ 51 (251) T 3lh5_A 39 LGSWLAIRIGKNH 51 (251) T ss_dssp TSEEEEEEECGGG T ss_pred CCCEEEEEECCCC T ss_conf 6746899978998 Done!