Query         537021.9.peg.1080_1
Match_columns 110
No_of_seqs    50 out of 52
Neff          3.6 
Searched_HMMs 23785
Date          Wed May 25 06:43:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1080.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3cpe_A Terminase, DNA packagin  67.7     5.9 0.00025   20.0   4.2   46    1-57    184-229 (592)
  2 1swg_A Circularly permuted cor  67.0    0.24   1E-05   28.2  -3.1   31   14-44      1-47  (128)
  3 2o0j_A Terminase, DNA packagin  44.6      19 0.00078   17.1   4.3   47    1-58    184-230 (385)
  4 1kjw_A Postsynaptic density pr  36.3     9.3 0.00039   18.9   0.9   10   25-34     39-48  (295)
  5 1t3l_A Dihydropyridine-sensiti  32.5     9.5  0.0004   18.8   0.5   11   24-34     77-87  (337)
  6 1t0h_A Voltage-gated calcium c  27.3      13 0.00054   18.0   0.4   12   24-35     87-98  (132)
  7 2ebv_A Nuclear pore complex pr  15.7      15 0.00064   17.6  -1.2   17   29-45     21-37  (57)
  8 2gfu_A DNA mismatch repair pro  13.7      43  0.0018   15.0   0.7   15   22-37     34-48  (134)
  9 2pz1_A RHO guanine nucleotide   13.4      74  0.0031   13.6   1.8   19   24-44     62-80  (466)
 10 3lh5_A Tight junction protein   13.3      64  0.0027   14.0   1.5   13   25-37     39-51  (251)

No 1  
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=67.71  E-value=5.9  Score=20.02  Aligned_cols=46  Identities=20%  Similarity=0.079  Sum_probs=36.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             952102124788999999863899850175455577279994145325787656665
Q 537021.9.peg.1    1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLL   57 (110)
Q Consensus         1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~L   57 (110)
                      +++-|+|||.+.++++..++.           |....+.+..+.+.++.|+++.+.-
T Consensus       184 lk~RQ~GKSt~~a~~~l~~al-----------~~~~~~i~ivA~~~~~A~~i~~~ik  229 (592)
T 3cpe_A          184 NLSRQLGKTTVVAIFLAHFVC-----------FNKDKAVGILAHKGSMSAEVLDRTK  229 (592)
T ss_dssp             EECSSSCHHHHHHHHHHHHHH-----------TSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHH-----------HCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             946988699999999999998-----------2999759999198999999999999


No 2  
>1swg_A Circularly permuted core-streptavidin E51/A46; biotin binding protein, circular permutation, signal, biotin, biotin-binding protein; HET: BTN; 1.80A {Streptomyces avidinii} SCOP: b.61.1.1 PDB: 1swf_A*
Probab=66.97  E-value=0.24  Score=28.18  Aligned_cols=31  Identities=29%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             HHHHHHHHCCCCCC---------------CC-CEEECCCCEEEEECC
Q ss_conf             99999863899850---------------17-545557727999414
Q 537021.9.peg.1   14 AEAAMHLSGCYPSW---------------WR-GYRFLQPIVMVAGSV   44 (110)
Q Consensus        14 ~E~A~HlTG~YP~W---------------W~-G~RF~~Pi~aWa~g~   44 (110)
                      +|--|||||||--|               |+ |.+|.+....|.|--
T Consensus         1 ~e~~y~ltGry~~~p~~~G~g~TFGFtV~W~ng~~~~~StTsWtGQC   47 (128)
T 1swg_A            1 MESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQY   47 (128)
T ss_dssp             --CEEEEEEEECSSCCSSSCCEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf             98435432040335887899763799999527854453041677887


No 3  
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=44.63  E-value=19  Score=17.10  Aligned_cols=47  Identities=19%  Similarity=0.066  Sum_probs=36.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf             9521021247889999998638998501754555772799941453257876566650
Q 537021.9.peg.1    1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLL   58 (110)
Q Consensus         1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~Ll   58 (110)
                      +++-|+|||.+.++++..++.           |.+....++...+.++.+.+..+...
T Consensus       184 lKsRQ~GKTT~~a~~~L~~Al-----------f~~~~~i~IiA~k~~~A~~i~~~ik~  230 (385)
T 2o0j_A          184 NLSRQLGKTTVVAIFLAHFVC-----------FNKDKAVGILAHKGSMSAEVLDRTKQ  230 (385)
T ss_dssp             EECSSSCHHHHHHHHHHHHHH-----------SSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHH-----------HCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             962668720879999999997-----------26677148861537889999999999


No 4  
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=36.33  E-value=9.3  Score=18.86  Aligned_cols=10  Identities=30%  Similarity=1.039  Sum_probs=6.2

Q ss_pred             CCCCCCEEEC
Q ss_conf             8501754555
Q 537021.9.peg.1   25 PSWWRGYRFL   34 (110)
Q Consensus        25 P~WW~G~RF~   34 (110)
                      |+||+++|-+
T Consensus        39 ~~wWqa~~~~   48 (295)
T 1kjw_A           39 EEWWQARRVH   48 (295)
T ss_dssp             SSEEEEEECC
T ss_pred             CCCEEEEECC
T ss_conf             9807999738


No 5  
>1t3l_A Dihydropyridine-sensitive L-type, calcium channel beta-2 subunit; protein-peptide complex, SH3 domain, guanylate kinase domain; 2.20A {Oryctolagus cuniculus} SCOP: b.34.2.1 c.37.1.1 PDB: 1t3s_A 1vyv_A 1vyu_A 1vyt_A
Probab=32.47  E-value=9.5  Score=18.81  Aligned_cols=11  Identities=27%  Similarity=0.752  Sum_probs=7.0

Q ss_pred             CCCCCCCEEEC
Q ss_conf             98501754555
Q 537021.9.peg.1   24 YPSWWRGYRFL   34 (110)
Q Consensus        24 YP~WW~G~RF~   34 (110)
                      +|+|||+|+..
T Consensus        77 D~~WWqar~~~   87 (337)
T 1t3l_A           77 NNDWWIGRLVK   87 (337)
T ss_dssp             SSSEEEEEESS
T ss_pred             CCCHHHEEECC
T ss_conf             83045323337


No 6  
>1t0h_A Voltage-gated calcium channel subunit BETA2A; SH3 domain, nucleotide kinase like domain, signaling protein; 1.97A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1t0j_A
Probab=27.32  E-value=13  Score=18.02  Aligned_cols=12  Identities=25%  Similarity=0.736  Sum_probs=8.3

Q ss_pred             CCCCCCCEEECC
Q ss_conf             985017545557
Q 537021.9.peg.1   24 YPSWWRGYRFLQ   35 (110)
Q Consensus        24 YP~WW~G~RF~~   35 (110)
                      -++||+|+....
T Consensus        87 d~~WW~gr~~~~   98 (132)
T 1t0h_A           87 NNDWWIGRLVKE   98 (132)
T ss_dssp             SSSEEEEEESST
T ss_pred             CCCCEEEEECCC
T ss_conf             888379998168


No 7  
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.72  E-value=15  Score=17.59  Aligned_cols=17  Identities=35%  Similarity=0.337  Sum_probs=13.5

Q ss_pred             CCEEECCCCEEEEECCC
Q ss_conf             75455577279994145
Q 537021.9.peg.1   29 RGYRFLQPIVMVAGSVT   45 (110)
Q Consensus        29 ~G~RF~~Pi~aWa~g~t   45 (110)
                      -|-+|.|||--|-.++-
T Consensus        21 fgdkfkrpigswecsvc   37 (57)
T 2ebv_A           21 FGDKFKRPIGSWECSVC   37 (57)
T ss_dssp             CCSCCCCCSSSCCCSSS
T ss_pred             CCCCCCCCCCCEEEEEE
T ss_conf             65001575575377789


No 8  
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=13.71  E-value=43  Score=14.95  Aligned_cols=15  Identities=33%  Similarity=1.119  Sum_probs=11.2

Q ss_pred             CCCCCCCCCEEECCCC
Q ss_conf             8998501754555772
Q 537021.9.peg.1   22 GCYPSWWRGYRFLQPI   37 (110)
Q Consensus        22 G~YP~WW~G~RF~~Pi   37 (110)
                      +.|| ||-|+..+.|.
T Consensus        34 ~gyP-wWPa~I~~~~~   48 (134)
T 2gfu_A           34 EGYP-WWPSLVYNHPF   48 (134)
T ss_dssp             TTSC-CEEEECCCCSS
T ss_pred             CCCC-CCCEEECCCCC
T ss_conf             7968-98756527420


No 9  
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protein; 2.25A {Homo sapiens} PDB: 2dx1_A
Probab=13.37  E-value=74  Score=13.59  Aligned_cols=19  Identities=16%  Similarity=0.183  Sum_probs=13.1

Q ss_pred             CCCCCCCEEECCCCEEEEECC
Q ss_conf             985017545557727999414
Q 537021.9.peg.1   24 YPSWWRGYRFLQPIVMVAGSV   44 (110)
Q Consensus        24 YP~WW~G~RF~~Pi~aWa~g~   44 (110)
                      .|+||.|+.  .+...|.-+.
T Consensus        62 ~~~wW~g~~--~~~~GwfPsn   80 (466)
T 2pz1_A           62 NREWWWGRV--ADGEGWFPAS   80 (466)
T ss_dssp             SSSEEEEEE--TTEEEEEEGG
T ss_pred             CCCEEEEEE--CCCEEECCHH
T ss_conf             798589998--9900131545


No 10 
>3lh5_A Tight junction protein ZO-1; SH3-guanylate kinase, intramolecular fold, alternative splicing, cell junction, cell membrane, membrane, phosphoprotein; 2.60A {Homo sapiens}
Probab=13.30  E-value=64  Score=13.96  Aligned_cols=13  Identities=15%  Similarity=0.163  Sum_probs=9.1

Q ss_pred             CCCCCCEEECCCC
Q ss_conf             8501754555772
Q 537021.9.peg.1   25 PSWWRGYRFLQPI   37 (110)
Q Consensus        25 P~WW~G~RF~~Pi   37 (110)
                      ++||+++|-+...
T Consensus        39 ~~wW~a~~v~~~~   51 (251)
T 3lh5_A           39 LGSWLAIRIGKNH   51 (251)
T ss_dssp             TSEEEEEEECGGG
T ss_pred             CCCEEEEEECCCC
T ss_conf             6746899978998


Done!