RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.1080_1
(110 letters)
>gnl|CDD|179913 PRK05007, PRK05007, PII uridylyl-transferase; Provisional.
Length = 884
Score = 27.2 bits (61), Expect = 0.90
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 78 LNMTRRSNIAGAYSTVTVRHL 98
M R SNI G YST T+R L
Sbjct: 375 YLMARNSNITGIYST-TLRQL 394
>gnl|CDD|185381 PRK15484, PRK15484, lipopolysaccharide
1,2-N-acetylglucosaminetransferase; Provisional.
Length = 380
Score = 27.1 bits (60), Expect = 0.99
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 47 ELTRDGIQRLLLGEPMSPDQQGSGMIPANKVLNMTRRSNIA 87
E +GI L EPM+ D S + N+ L + IA
Sbjct: 314 EFVLEGITGYHLAEPMTSDSIISDI---NRTLADPELTQIA 351
>gnl|CDD|161736 TIGR00160, MGSA, methylglyoxal synthase. Methylglyoxal synthase
(MGS) generates methylglyoxal (MG), a toxic metabolite
(that may also be a regulatory metabolite and) that is
detoxified, prinicipally, through a pathway involving
glutathione and glyoxylase I. Totemeyer, et al.
(MUID:98149311) propose that, during a loss of control
over carbon flux, with accumulation of phosphorylated
sugars and depletion of phosphate, as might happen
during a rapid shift to a richer medium, MGS aids the
cell by converting some dihydroxyacetone phosphate
(DHAP) to MG and phosphate. This is therefore an
alternative to triosephosphate isomerase and the
remainder of the glycolytic pathway for the disposal of
DHAP during the stress of a sudden increase in
available sugars.
Length = 143
Score = 27.1 bits (60), Expect = 1.1
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 29 RGYRFLQPIVMVAGSVTYELTRDG----IQRLLLGEPMSPDQQGSGMIPANKVLNM 80
+ L + A T L I +L G PM DQQ +I K+ +
Sbjct: 23 QHKPLLSQHDLYATGTTGNLISRATGLNINAMLSG-PMGGDQQIGALIAEGKIDAV 77
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIA based on a phylogenetic
analysis which distinguishes this group from the Type
IIB PMCA calcium pump modelled by TIGR01517. A separate
analysis divides Type IIA into sub-types, SERCA and PMR1
the former of which is modelled by TIGR01116.
Length = 884
Score = 26.3 bits (58), Expect = 1.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 57 LLGEPMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDI 103
L GE +P + + IPA ++ RSNI A+ VR G+ I
Sbjct: 168 LTGE-TTPVSKVTAPIPAATNGDLAERSNI--AFMGTLVRCGHGKGI 211
>gnl|CDD|183589 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic
subunit; Reviewed.
Length = 207
Score = 25.3 bits (56), Expect = 3.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 33 FLQPIVMVAGSVTYELTRDGIQRLLLGEPMSPDQ 66
F + I+ + G V D + +LL+ E + PD+
Sbjct: 33 FEERIIFLGGQVDDASANDVMAQLLVLESIDPDR 66
>gnl|CDD|151033 pfam10460, Peptidase_M30, Peptidase M30. This family contains
the metallopeptidase hyicolysin. Hyicolysin has a zinc
ion which is liganded by two histidine and one
glutamate residue.
Length = 366
Score = 24.5 bits (53), Expect = 6.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 59 GEPMSPDQQGSGMIPANKVLNM 80
G P P+ S MIP + L++
Sbjct: 62 GPPWGPNSYSSSMIPTGQPLDI 83
>gnl|CDD|162856 TIGR02435, CobG, precorrin-3B synthase. An iron-sulfur protein. An
oxygen atom from dioxygen is incorporated into the
macrocycle at C-20. In the aerobic cobalamin biosythesis
pathway, four enzymes are involved in the conversion of
precorrin-3A to precorrin-6A. The first of the four
steps is carried out by EC 1.14.13.83, precorrin-3B
synthase (CobG), yielding precorrin-3B as the product.
This is followed by three methylation reactions, which
introduce a methyl group at C-17 (CobJ; EC 2.1.1.131),
C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152)
of the macrocycle, giving rise to precorrin-4,
precorrin-5 and precorrin-6A, respectively.
Length = 390
Score = 24.4 bits (53), Expect = 6.7
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 3 GNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTY 46
L A +HLSGC + I +VA Y
Sbjct: 349 AEALAAYCEPTAPITVHLSGCAKGC--AHPGPAAITLVAAGAGY 390
>gnl|CDD|138914 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 24.4 bits (53), Expect = 7.2
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 29 RGYRFLQPIVMVA 41
+GYRF +P+V+V+
Sbjct: 101 QGYRFNRPVVVVS 113
>gnl|CDD|181347 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 24.1 bits (53), Expect = 8.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 86 IAGAYSTVTVRHLSGRDIGFIIE 108
+G Y T HL+ +I +I++
Sbjct: 58 RSGLYYTPINWHLTAAEIAYIVD 80
>gnl|CDD|182943 PRK11069, recC, exonuclease V subunit gamma; Provisional.
Length = 1122
Score = 23.7 bits (52), Expect = 10.0
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 52 GIQRLLLGEPMSPDQQG--SGMIPANKV 77
G+ R+LLG M G G++P ++
Sbjct: 527 GLTRMLLGYAM-ESAAGEWQGVLPYDES 553
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.135 0.407
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,815,908
Number of extensions: 102983
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 20
Length of query: 110
Length of database: 5,994,473
Length adjustment: 76
Effective length of query: 34
Effective length of database: 4,352,265
Effective search space: 147977010
Effective search space used: 147977010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)