RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1080_1
         (110 letters)



>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of
          TFIIF {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 41 AGSVTYELTRDGIQRLLLGEPMSPDQ 66
           GS   ++T D ++R L  +PM+   
Sbjct: 3  LGSGDVQVTEDAVRRYLTRKPMTTKD 28


>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
           {Methylococcus capsulatus [TaxId: 414]}
          Length = 512

 Score = 23.3 bits (50), Expect = 5.8
 Identities = 2/12 (16%), Positives = 7/12 (58%)

Query: 27  WWRGYRFLQPIV 38
           +W   ++  P++
Sbjct: 261 FWTQQKYFTPVL 272


>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 23.1 bits (50), Expect = 6.0
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 49 TRDGIQRLLLGEPMSPDQQGSGMI-----PANKV---LNMTRRSNIAGAYSTVTVRHLS 99
           RDG+  + +    +P+             A      L +++  +I   Y+T  V   +
Sbjct: 24 DRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFN 82


>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
           {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
          Length = 435

 Score = 23.1 bits (48), Expect = 6.3
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 12/52 (23%)

Query: 39  MVAGSVTY------ELTRDGIQRLL------LGEPMSPDQQGSGMIPANKVL 78
            V+G  T       E +   ++  L      L      +Q G GMI A    
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQTGYGMINAVAAK 425


>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43,
           N-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
           109322]}
          Length = 318

 Score = 23.3 bits (48), Expect = 6.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 58  LGEPMSPDQQGSGMIPANKVLNM 80
           +G       QG G +  +K LN+
Sbjct: 296 IGLGYPNGNQGWGRVTLDKSLNV 318


>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
           [TaxId: 93466]}
          Length = 671

 Score = 22.7 bits (47), Expect = 8.8
 Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 12/74 (16%)

Query: 39  MVAGSVTY------ELTRDGIQRLL------LGEPMSPDQQGSGMIPANKVLNMTRRSNI 86
            V G V              I++LL                G G++  +  L     +  
Sbjct: 386 HVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHDTGYGLVKLDAALQGPLPTQG 445

Query: 87  AGAYSTVTVRHLSG 100
                 V V    G
Sbjct: 446 GVEEFQVVVTDAKG 459


>d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator
          BB3683 {Bordetella bronchiseptica [TaxId: 518]}
          Length = 162

 Score = 22.4 bits (47), Expect = 9.5
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 62 MSPDQQGSGMIPANKVLNMTRR 83
          ++PD++G G    +++L   R 
Sbjct: 8  LAPDEEGEGGRAESRILECRRL 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,370
Number of extensions: 15943
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)