Query 537021.9.peg.1086_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:09:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1086.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3d85_D IL-12B, interleukin-12 15.4 74 0.0022 15.6 1.5 27 7-33 23-71 (99) 2 >1vg0_A RAB proteins geranylge 14.7 46 0.0014 16.6 0.3 18 18-36 99-116 (242) 3 >1xg8_A Hypothetical protein S 9.2 55 0.0016 16.2 -0.8 23 3-25 13-35 (111) 4 >2bcg_G Secretory pathway GDP 7.3 88 0.0026 15.2 -0.4 17 18-35 54-70 (152) 5 >1i9w_A Fusion protein E1; env 6.6 1.8E+02 0.0052 13.7 0.8 10 23-33 38-47 (116) 6 >2jn4_A Hypothetical protein F 6.4 1.9E+02 0.0057 13.4 0.9 16 18-33 49-64 (87) 7 >1ub6_H Antibody 19G2, alpha c 6.0 2E+02 0.0059 13.4 0.8 12 21-32 69-80 (94) 8 >1hxm_B Gamma-delta T-cell rec 5.9 2.1E+02 0.0063 13.2 0.9 11 21-31 75-85 (116) 9 >3eow_R Poliovirus receptor; i 5.8 2.2E+02 0.0064 13.2 0.9 10 21-30 70-79 (107) 10 >1q87_A 39 kDa initiator bindi 5.8 2.6E+02 0.0076 12.8 1.3 9 25-33 57-65 (114) No 1 >>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} (D:1-99) Probab=15.39 E-value=74 Score=15.57 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=16.3 Q ss_pred EEEEEECCCCCC-------CCC--------------CCC-CCEEEEEEC Q ss_conf 133100006532-------122--------------233-516566402 Q 537021.9.peg.1 7 MVSASCSIAPES-------RRS--------------ESW-GGIYTCFNR 33 (38) Q Consensus 7 mvsascsiapes-------rrs--------------esw-ggiytcfnr 33 (38) +|.-+|.-+.|. ..| |.+ ||-|||+.- T Consensus 23 ~V~L~C~~~~E~~I~W~kd~~se~~~~GntltV~VkE~~daGnYTCh~~ 71 (99) T 3d85_D 23 MVVLTCDTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG 71 (99) T ss_dssp EEEEECSSSCCSSCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEEET T ss_pred EEEEECCCCCCCEEEEECCCCEECCCCCCEEEEEEEEECCCEEEEEECC T ss_conf 1899808889986899629930014689869999978547878999305 No 2 >>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} (A:1-91,A:378-439,A:562-650) Probab=14.67 E-value=46 Score=16.58 Aligned_cols=18 Identities=39% Similarity=0.971 Sum_probs=12.3 Q ss_pred CCCCCCCCCEEEEEECEEE Q ss_conf 2122233516566402487 Q 537021.9.peg.1 18 SRRSESWGGIYTCFNRTIQ 36 (38) Q Consensus 18 srrseswggiytcfnrtiq 36 (38) +|.+--+||+| |.|+.|+ T Consensus 99 CRlsAV~GGvY-vLn~~V~ 116 (242) T 1vg0_A 99 CRMCAVFGGIY-CLRHSVQ 116 (242) T ss_dssp HHHHHHTTCEE-ESSCCEE T ss_pred HHHHHHCCCEE-ECCCCCC T ss_conf 99987539689-8588542 No 3 >>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} (A:) Probab=9.22 E-value=55 Score=16.22 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=18.1 Q ss_pred CCCCEEEEEECCCCCCCCCCCCC Q ss_conf 22211331000065321222335 Q 537021.9.peg.1 3 YKNAMVSASCSIAPESRRSESWG 25 (38) Q Consensus 3 yknamvsascsiapesrrseswg 25 (38) |-...+-|||--+|.|...-.|- T Consensus 13 YGA~viCASCVn~PsSkeT~EWL 35 (111) T 1xg8_A 13 YGADVICASCVNAPTSKDIYDWL 35 (111) T ss_dssp EECSSCCGGGSSSCCHHHHHHHH T ss_pred ECCCCCCHHHCCCCCCHHHHHHH T ss_conf 74454045423899724189999 No 4 >>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (G:1-46,G:242-298,G:405-453) Probab=7.31 E-value=88 Score=15.16 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=9.7 Q ss_pred CCCCCCCCCEEEEEECEE Q ss_conf 212223351656640248 Q 537021.9.peg.1 18 SRRSESWGGIYTCFNRTI 35 (38) Q Consensus 18 srrseswggiytcfnrti 35 (38) .|.+.-+||+| |.|+.| T Consensus 54 cR~~AV~Gg~Y-~L~~~v 70 (152) T 2bcg_G 54 ARLSAIYGGTY-MLDTPI 70 (152) T ss_dssp HHHHHHTTCEE-ECSCCC T ss_pred HHHHHHCCCEE-EECCEE T ss_conf 99999709999-959944 No 5 >>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} (A:51-114,A:195-246) Probab=6.59 E-value=1.8e+02 Score=13.65 Aligned_cols=10 Identities=60% Similarity=1.644 Sum_probs=5.9 Q ss_pred CCCCEEEEEEC Q ss_conf 33516566402 Q 537021.9.peg.1 23 SWGGIYTCFNR 33 (38) Q Consensus 23 swggiytcfnr 33 (38) -|||-| ||-. T Consensus 38 mWGgA~-CFCd 47 (116) T 1i9w_A 38 MWGGAY-CFCD 47 (116) T ss_pred CCCCEE-EEEC T ss_conf 027545-7753 No 6 >>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} (A:) Probab=6.35 E-value=1.9e+02 Score=13.45 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=11.6 Q ss_pred CCCCCCCCCEEEEEEC Q ss_conf 2122233516566402 Q 537021.9.peg.1 18 SRRSESWGGIYTCFNR 33 (38) Q Consensus 18 srrseswggiytcfnr 33 (38) ....+.|||+.|--|- T Consensus 49 ~e~~~~WGG~vtLaNG 64 (87) T 2jn4_A 49 MENPALWGGKVTLANG 64 (87) T ss_dssp ESSSSSCSSEEEETTS T ss_pred EECCCCCCCEEEECCC T ss_conf 1447655888996897 No 7 >>1ub6_H Antibody 19G2, alpha chain; antibody fluorscence dynamics, SERA ligand, immune system; 2.12A {Mus musculus} (H:115-208) Probab=5.98 E-value=2e+02 Score=13.37 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=9.2 Q ss_pred CCCCCCEEEEEE Q ss_conf 223351656640 Q 537021.9.peg.1 21 SESWGGIYTCFN 32 (38) Q Consensus 21 seswggiytcfn 32 (38) .+.||..|+|-- T Consensus 69 ~~~w~~~ytC~V 80 (94) T 1ub6_H 69 SSTWPSTVTCSV 80 (94) T ss_dssp TTTTTSCEEEEE T ss_pred HHHCCCEEEEEE T ss_conf 899998408999 No 8 >>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} (B:127-242) Probab=5.88 E-value=2.1e+02 Score=13.21 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=8.8 Q ss_pred CCCCCCEEEEE Q ss_conf 22335165664 Q 537021.9.peg.1 21 SESWGGIYTCF 31 (38) Q Consensus 21 seswggiytcf 31 (38) .+.||..|+|- T Consensus 75 ~~~~~~~ytC~ 85 (116) T 1hxm_B 75 EKSLDKEHRCI 85 (116) T ss_dssp TGGGGSCEEEE T ss_pred CHHCCCCCEEE T ss_conf 20037321037 No 9 >>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3epc_R* 3epd_R* 3epf_R* (R:115-221) Probab=5.79 E-value=2.2e+02 Score=13.19 Aligned_cols=10 Identities=40% Similarity=0.475 Sum_probs=0.0 Q ss_pred CCCCCCEEEE Q ss_conf 2233516566 Q 537021.9.peg.1 21 SESWGGIYTC 30 (38) Q Consensus 21 seswggiytc 30 (38) .+..+|.|+| T Consensus 70 ~~~d~g~Y~C 79 (107) T 3eow_R 70 SQVDGKQVTC 79 (107) T ss_dssp SCCCCCCEEE T ss_pred CHHCCCEEEE T ss_conf 3773989999 No 10 >>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} (A:108-221) Probab=5.79 E-value=2.6e+02 Score=12.81 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=0.0 Q ss_pred CCEEEEEEC Q ss_conf 516566402 Q 537021.9.peg.1 25 GGIYTCFNR 33 (38) Q Consensus 25 ggiytcfnr 33 (38) +|+|.|+|+ T Consensus 57 ~G~~kvyN~ 65 (114) T 1q87_A 57 TGIRKIWNK 65 (114) T ss_dssp TEEEEEEEC T ss_pred CCEEEEECC T ss_conf 956897146 Done!