Query         537021.9.peg.1086_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 08:09:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1086.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3d85_D IL-12B, interleukin-12  15.4      74  0.0022   15.6   1.5   27    7-33     23-71  (99)
  2 >1vg0_A RAB proteins geranylge  14.7      46  0.0014   16.6   0.3   18   18-36     99-116 (242)
  3 >1xg8_A Hypothetical protein S   9.2      55  0.0016   16.2  -0.8   23    3-25     13-35  (111)
  4 >2bcg_G Secretory pathway GDP    7.3      88  0.0026   15.2  -0.4   17   18-35     54-70  (152)
  5 >1i9w_A Fusion protein E1; env   6.6 1.8E+02  0.0052   13.7   0.8   10   23-33     38-47  (116)
  6 >2jn4_A Hypothetical protein F   6.4 1.9E+02  0.0057   13.4   0.9   16   18-33     49-64  (87)
  7 >1ub6_H Antibody 19G2, alpha c   6.0   2E+02  0.0059   13.4   0.8   12   21-32     69-80  (94)
  8 >1hxm_B Gamma-delta T-cell rec   5.9 2.1E+02  0.0063   13.2   0.9   11   21-31     75-85  (116)
  9 >3eow_R Poliovirus receptor; i   5.8 2.2E+02  0.0064   13.2   0.9   10   21-30     70-79  (107)
 10 >1q87_A 39 kDa initiator bindi   5.8 2.6E+02  0.0076   12.8   1.3    9   25-33     57-65  (114)

No 1  
>>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} (D:1-99)
Probab=15.39  E-value=74  Score=15.57  Aligned_cols=27  Identities=37%  Similarity=0.609  Sum_probs=16.3

Q ss_pred             EEEEEECCCCCC-------CCC--------------CCC-CCEEEEEEC
Q ss_conf             133100006532-------122--------------233-516566402
Q 537021.9.peg.1    7 MVSASCSIAPES-------RRS--------------ESW-GGIYTCFNR   33 (38)
Q Consensus         7 mvsascsiapes-------rrs--------------esw-ggiytcfnr   33 (38)
                      +|.-+|.-+.|.       ..|              |.+ ||-|||+.-
T Consensus        23 ~V~L~C~~~~E~~I~W~kd~~se~~~~GntltV~VkE~~daGnYTCh~~   71 (99)
T 3d85_D           23 MVVLTCDTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKG   71 (99)
T ss_dssp             EEEEECSSSCCSSCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEEET
T ss_pred             EEEEECCCCCCCEEEEECCCCEECCCCCCEEEEEEEEECCCEEEEEECC
T ss_conf             1899808889986899629930014689869999978547878999305


No 2  
>>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} (A:1-91,A:378-439,A:562-650)
Probab=14.67  E-value=46  Score=16.58  Aligned_cols=18  Identities=39%  Similarity=0.971  Sum_probs=12.3

Q ss_pred             CCCCCCCCCEEEEEECEEE
Q ss_conf             2122233516566402487
Q 537021.9.peg.1   18 SRRSESWGGIYTCFNRTIQ   36 (38)
Q Consensus        18 srrseswggiytcfnrtiq   36 (38)
                      +|.+--+||+| |.|+.|+
T Consensus        99 CRlsAV~GGvY-vLn~~V~  116 (242)
T 1vg0_A           99 CRMCAVFGGIY-CLRHSVQ  116 (242)
T ss_dssp             HHHHHHTTCEE-ESSCCEE
T ss_pred             HHHHHHCCCEE-ECCCCCC
T ss_conf             99987539689-8588542


No 3  
>>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} (A:)
Probab=9.22  E-value=55  Score=16.22  Aligned_cols=23  Identities=35%  Similarity=0.631  Sum_probs=18.1

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             22211331000065321222335
Q 537021.9.peg.1    3 YKNAMVSASCSIAPESRRSESWG   25 (38)
Q Consensus         3 yknamvsascsiapesrrseswg   25 (38)
                      |-...+-|||--+|.|...-.|-
T Consensus        13 YGA~viCASCVn~PsSkeT~EWL   35 (111)
T 1xg8_A           13 YGADVICASCVNAPTSKDIYDWL   35 (111)
T ss_dssp             EECSSCCGGGSSSCCHHHHHHHH
T ss_pred             ECCCCCCHHHCCCCCCHHHHHHH
T ss_conf             74454045423899724189999


No 4  
>>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (G:1-46,G:242-298,G:405-453)
Probab=7.31  E-value=88  Score=15.16  Aligned_cols=17  Identities=35%  Similarity=0.700  Sum_probs=9.7

Q ss_pred             CCCCCCCCCEEEEEECEE
Q ss_conf             212223351656640248
Q 537021.9.peg.1   18 SRRSESWGGIYTCFNRTI   35 (38)
Q Consensus        18 srrseswggiytcfnrti   35 (38)
                      .|.+.-+||+| |.|+.|
T Consensus        54 cR~~AV~Gg~Y-~L~~~v   70 (152)
T 2bcg_G           54 ARLSAIYGGTY-MLDTPI   70 (152)
T ss_dssp             HHHHHHTTCEE-ECSCCC
T ss_pred             HHHHHHCCCEE-EECCEE
T ss_conf             99999709999-959944


No 5  
>>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} (A:51-114,A:195-246)
Probab=6.59  E-value=1.8e+02  Score=13.65  Aligned_cols=10  Identities=60%  Similarity=1.644  Sum_probs=5.9

Q ss_pred             CCCCEEEEEEC
Q ss_conf             33516566402
Q 537021.9.peg.1   23 SWGGIYTCFNR   33 (38)
Q Consensus        23 swggiytcfnr   33 (38)
                      -|||-| ||-.
T Consensus        38 mWGgA~-CFCd   47 (116)
T 1i9w_A           38 MWGGAY-CFCD   47 (116)
T ss_pred             CCCCEE-EEEC
T ss_conf             027545-7753


No 6  
>>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} (A:)
Probab=6.35  E-value=1.9e+02  Score=13.45  Aligned_cols=16  Identities=31%  Similarity=0.486  Sum_probs=11.6

Q ss_pred             CCCCCCCCCEEEEEEC
Q ss_conf             2122233516566402
Q 537021.9.peg.1   18 SRRSESWGGIYTCFNR   33 (38)
Q Consensus        18 srrseswggiytcfnr   33 (38)
                      ....+.|||+.|--|-
T Consensus        49 ~e~~~~WGG~vtLaNG   64 (87)
T 2jn4_A           49 MENPALWGGKVTLANG   64 (87)
T ss_dssp             ESSSSSCSSEEEETTS
T ss_pred             EECCCCCCCEEEECCC
T ss_conf             1447655888996897


No 7  
>>1ub6_H Antibody 19G2, alpha chain; antibody fluorscence dynamics, SERA ligand, immune system; 2.12A {Mus musculus} (H:115-208)
Probab=5.98  E-value=2e+02  Score=13.37  Aligned_cols=12  Identities=33%  Similarity=0.673  Sum_probs=9.2

Q ss_pred             CCCCCCEEEEEE
Q ss_conf             223351656640
Q 537021.9.peg.1   21 SESWGGIYTCFN   32 (38)
Q Consensus        21 seswggiytcfn   32 (38)
                      .+.||..|+|--
T Consensus        69 ~~~w~~~ytC~V   80 (94)
T 1ub6_H           69 SSTWPSTVTCSV   80 (94)
T ss_dssp             TTTTTSCEEEEE
T ss_pred             HHHCCCEEEEEE
T ss_conf             899998408999


No 8  
>>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} (B:127-242)
Probab=5.88  E-value=2.1e+02  Score=13.21  Aligned_cols=11  Identities=18%  Similarity=0.283  Sum_probs=8.8

Q ss_pred             CCCCCCEEEEE
Q ss_conf             22335165664
Q 537021.9.peg.1   21 SESWGGIYTCF   31 (38)
Q Consensus        21 seswggiytcf   31 (38)
                      .+.||..|+|-
T Consensus        75 ~~~~~~~ytC~   85 (116)
T 1hxm_B           75 EKSLDKEHRCI   85 (116)
T ss_dssp             TGGGGSCEEEE
T ss_pred             CHHCCCCCEEE
T ss_conf             20037321037


No 9  
>>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3epc_R* 3epd_R* 3epf_R* (R:115-221)
Probab=5.79  E-value=2.2e+02  Score=13.19  Aligned_cols=10  Identities=40%  Similarity=0.475  Sum_probs=0.0

Q ss_pred             CCCCCCEEEE
Q ss_conf             2233516566
Q 537021.9.peg.1   21 SESWGGIYTC   30 (38)
Q Consensus        21 seswggiytc   30 (38)
                      .+..+|.|+|
T Consensus        70 ~~~d~g~Y~C   79 (107)
T 3eow_R           70 SQVDGKQVTC   79 (107)
T ss_dssp             SCCCCCCEEE
T ss_pred             CHHCCCEEEE
T ss_conf             3773989999


No 10 
>>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} (A:108-221)
Probab=5.79  E-value=2.6e+02  Score=12.81  Aligned_cols=9  Identities=33%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             CCEEEEEEC
Q ss_conf             516566402
Q 537021.9.peg.1   25 GGIYTCFNR   33 (38)
Q Consensus        25 ggiytcfnr   33 (38)
                      +|+|.|+|+
T Consensus        57 ~G~~kvyN~   65 (114)
T 1q87_A           57 TGIRKIWNK   65 (114)
T ss_dssp             TEEEEEEEC
T ss_pred             CCEEEEECC
T ss_conf             956897146


Done!