RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.1086_1 (38 letters) >gnl|CDD|34516 COG4907, COG4907, Predicted membrane protein [Function unknown]. Length = 595 Score = 25.4 bits (55), Expect = 3.7 Identities = 10/26 (38%), Positives = 12/26 (46%) Query: 2 RYKNAMVSASCSIAPESRRSESWGGI 27 R N + A +IA R S S GG Sbjct: 555 RSFNNLNRAYSAIASSRRSSSSGGGG 580 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.129 0.405 Gapped Lambda K H 0.267 0.0553 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 412,309 Number of extensions: 9038 Number of successful extensions: 14 Number of sequences better than 10.0: 1 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 1 Length of query: 38 Length of database: 6,263,737 Length adjustment: 12 Effective length of query: 26 Effective length of database: 6,004,429 Effective search space: 156115154 Effective search space used: 156115154 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (23.8 bits)