Query         537021.9.peg.1087_1
Match_columns 48
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 08:34:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1087.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3dac_P Cellular tumor antigen  25.3      11 0.00031   19.1  -1.1   17   28-44      5-21  (26)
  2 >1w6s_A Methanol dehydrogenase  10.8 1.4E+02  0.0041   13.9   1.7   22    8-29     19-41  (49)
  3 >2cou_A ECT2 protein; BRCT dom   8.5      96  0.0028   14.6   0.2   32    3-34     51-82  (109)
  4 >3kx2_B PRE-mRNA-splicing fact   8.4 1.3E+02  0.0038   14.0   0.8   31    2-32     19-62  (110)
  5 >1ywk_A 4-deoxy-L-threo-5-hexo   8.1      29 0.00087   17.1  -2.6   28    1-28      6-33  (149)
  6 >2gs0_B Cellular tumor antigen   7.9      72  0.0021   15.2  -0.6   14   29-42      3-16  (54)
  7 >2ea3_A Chymotrypsin; celloulo   7.8 1.4E+02  0.0041   13.9   0.8   10   23-32     19-28  (189)
  8 >1xr7_A Genome polyprotein; RN   6.2 1.1E+02  0.0033   14.3  -0.4    5   24-28     20-24  (57)
  9 >1wcz_A Glutamyl endopeptidase   5.9 2.5E+02  0.0074   12.6   1.3   10   23-32     38-47  (268)
 10 >2k8f_B Cellular tumor antigen   5.4      74  0.0022   15.2  -1.7   12   30-41     23-34  (39)

No 1  
>>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} (P:)
Probab=25.30  E-value=11  Score=19.15  Aligned_cols=17  Identities=47%  Similarity=0.798  Sum_probs=13.6

Q ss_pred             CEEEEECCCCCEEEEEE
Q ss_conf             23899867551100335
Q 537021.9.peg.1   28 PKWILLSPNNVMAPLNL   44 (48)
Q Consensus        28 pkwillspnnvmaplnl   44 (48)
                      .-|-||..|||..||--
T Consensus         5 dlwkllpennvlsplps   21 (26)
T 3dac_P            5 DLWKLLPENNVLSPLPS   21 (26)
T ss_pred             HHHHHCCCCCCCCCCCC
T ss_conf             89987754575677865


No 2  
>>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:53-101)
Probab=10.81  E-value=1.4e+02  Score=13.87  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=15.2

Q ss_pred             CCCCEEECC-CCCCCCEEEECCE
Q ss_conf             353023135-3100215665323
Q 537021.9.peg.1    8 HPNRVMASN-AETARNAFLIHPK   29 (48)
Q Consensus         8 hpnrvmasn-aetarnaflihpk   29 (48)
                      ++|+|.|-+ |+|.+-..--.|+
T Consensus        19 ~~n~v~AlD~A~TG~~~W~ydp~   41 (49)
T 1w6s_A           19 FPNNTFALGLDDPGTILWQDKPK   41 (49)
T ss_dssp             TTTCEEEEETTCTTSEEEEECCC
T ss_pred             CCCCEEEEECCCCCCEEEECCCC
T ss_conf             89958999479998678862487


No 3  
>>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=8.49  E-value=96  Score=14.62  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=23.3

Q ss_pred             EEEEECCCCEEECCCCCCCCEEEECCEEEEEC
Q ss_conf             06887353023135310021566532389986
Q 537021.9.peg.1    3 TKVMVHPNRVMASNAETARNAFLIHPKWILLS   34 (48)
Q Consensus         3 tkvmvhpnrvmasnaetarnaflihpkwills   34 (48)
                      |-+.+.+++..--+...+++...++|.|+.-+
T Consensus        51 thli~~~~~~~k~~~a~~~~~~iV~~~Wl~~~   82 (109)
T 2cou_A           51 THLIVEENTVKDLPFEPSKKLFVVKQEWFWGS   82 (109)
T ss_dssp             SEEEECTTTCSSCSSCCCTTSEEECHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHCCCCCCCHHHHHHH
T ss_conf             17997436870467888557465999999999


No 4  
>>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:658-767)
Probab=8.35  E-value=1.3e+02  Score=14.02  Aligned_cols=31  Identities=23%  Similarity=0.682  Sum_probs=20.5

Q ss_pred             CEEEEECCCCEEEC-------------CCCCCCCEEEECCEEEE
Q ss_conf             60688735302313-------------53100215665323899
Q 537021.9.peg.1    2 KTKVMVHPNRVMAS-------------NAETARNAFLIHPKWIL   32 (48)
Q Consensus         2 ktkvmvhpnrvmas-------------naetarnaflihpkwil   32 (48)
                      +++|.+||.-++..             +.+-.|+.--|.|.|++
T Consensus        19 ~~~v~iHPsS~L~~~p~~Vvy~Elv~Tsk~Y~r~vt~I~~~Wl~   62 (110)
T 3kx2_B           19 NQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLI   62 (110)
T ss_dssp             CCEEEECTTSCCCTTCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred             CCEEEECCCHHCCCCCCEEEEEEEEEEEHHHEEECCEECHHHHH
T ss_conf             92799768210499989899997777800010350136799999


No 5  
>>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} (A:1-149)
Probab=8.10  E-value=29  Score=17.06  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCEEECCCCCCCCEEEECC
Q ss_conf             9606887353023135310021566532
Q 537021.9.peg.1    1 MKTKVMVHPNRVMASNAETARNAFLIHP   28 (48)
Q Consensus         1 mktkvmvhpnrvmasnaetarnaflihp   28 (48)
                      |++.--.||..+..-+.+.-|..|||..
T Consensus         6 ~~~r~a~~p~~~k~~~T~~LR~~flie~   33 (149)
T 1ywk_A            6 METRYTHSPADIRHYSTEQLRDEFLVEK   33 (149)
T ss_dssp             EEEECCCCHHHHTTCCHHHHHHHHEESC
T ss_pred             EEEECCCCHHHHHHCCHHHHHHHHCHHH
T ss_conf             3553269989970179999997504654


No 6  
>>2gs0_B Cellular tumor antigen P53; TFIIH, TFB1, activation, transcription, PH domain; NMR {Homo sapiens} (B:)
Probab=7.95  E-value=72  Score=15.21  Aligned_cols=14  Identities=57%  Similarity=1.056  Sum_probs=10.1

Q ss_pred             EEEEECCCCCEEEE
Q ss_conf             38998675511003
Q 537021.9.peg.1   29 KWILLSPNNVMAPL   42 (48)
Q Consensus        29 kwillspnnvmapl   42 (48)
                      -|-||-+|||..+.
T Consensus         3 LWkLLPennvLS~~   16 (54)
T 2gs0_B            3 LWKLLPENNVLSPL   16 (54)
T ss_pred             HHHHCCCCCCCCCC
T ss_conf             77658754545666


No 7  
>>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} (A:)
Probab=7.85  E-value=1.4e+02  Score=13.86  Aligned_cols=10  Identities=0%  Similarity=-0.297  Sum_probs=0.0

Q ss_pred             EEEECCEEEE
Q ss_conf             5665323899
Q 537021.9.peg.1   23 AFLIHPKWIL   32 (48)
Q Consensus        23 aflihpkwil   32 (48)
                      +.||+++|||
T Consensus        19 GsLI~~~wVL   28 (189)
T 2ea3_A           19 IGFAVNGGFI   28 (189)
T ss_dssp             CCEEETTEEE
T ss_pred             EEEEECCCEE
T ss_conf             6999779999


No 8  
>>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} (A:366-422)
Probab=6.24  E-value=1.1e+02  Score=14.31  Aligned_cols=5  Identities=100%  Similarity=1.902  Sum_probs=0.0

Q ss_pred             EEECC
Q ss_conf             66532
Q 537021.9.peg.1   24 FLIHP   28 (48)
Q Consensus        24 flihp   28 (48)
                      |||||
T Consensus        20 FLiHP   24 (57)
T 1xr7_A           20 FLIHP   24 (57)
T ss_dssp             TSEEE
T ss_pred             EEEEE
T ss_conf             48984


No 9  
>>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} (A:)
Probab=5.90  E-value=2.5e+02  Score=12.64  Aligned_cols=10  Identities=10%  Similarity=0.245  Sum_probs=0.0

Q ss_pred             EEEECCEEEE
Q ss_conf             5665323899
Q 537021.9.peg.1   23 AFLIHPKWIL   32 (48)
Q Consensus        23 aflihpkwil   32 (48)
                      ..||++.|||
T Consensus        38 GtLIs~~~VL   47 (268)
T 1wcz_A           38 GVVVGKDTLL   47 (268)
T ss_dssp             EEECSSSEEE
T ss_pred             EEEEECCEEE
T ss_conf             9999799999


No 10 
>>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens} (B:)
Probab=5.43  E-value=74  Score=15.17  Aligned_cols=12  Identities=58%  Similarity=1.179  Sum_probs=0.0

Q ss_pred             EEEECCCCCEEE
Q ss_conf             899867551100
Q 537021.9.peg.1   30 WILLSPNNVMAP   41 (48)
Q Consensus        30 willspnnvmap   41 (48)
                      |-||.+|||..+
T Consensus        23 WkLLP~nnvLs~   34 (39)
T 2k8f_B           23 WKLLPENNVLSP   34 (39)
T ss_dssp             HHTCSSSCCCCC
T ss_pred             HHHCCCCCCCCC
T ss_conf             986784343544


Done!