Query 537021.9.peg.1087_1 Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:34:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1087.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3dac_P Cellular tumor antigen 25.3 11 0.00031 19.1 -1.1 17 28-44 5-21 (26) 2 >1w6s_A Methanol dehydrogenase 10.8 1.4E+02 0.0041 13.9 1.7 22 8-29 19-41 (49) 3 >2cou_A ECT2 protein; BRCT dom 8.5 96 0.0028 14.6 0.2 32 3-34 51-82 (109) 4 >3kx2_B PRE-mRNA-splicing fact 8.4 1.3E+02 0.0038 14.0 0.8 31 2-32 19-62 (110) 5 >1ywk_A 4-deoxy-L-threo-5-hexo 8.1 29 0.00087 17.1 -2.6 28 1-28 6-33 (149) 6 >2gs0_B Cellular tumor antigen 7.9 72 0.0021 15.2 -0.6 14 29-42 3-16 (54) 7 >2ea3_A Chymotrypsin; celloulo 7.8 1.4E+02 0.0041 13.9 0.8 10 23-32 19-28 (189) 8 >1xr7_A Genome polyprotein; RN 6.2 1.1E+02 0.0033 14.3 -0.4 5 24-28 20-24 (57) 9 >1wcz_A Glutamyl endopeptidase 5.9 2.5E+02 0.0074 12.6 1.3 10 23-32 38-47 (268) 10 >2k8f_B Cellular tumor antigen 5.4 74 0.0022 15.2 -1.7 12 30-41 23-34 (39) No 1 >>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} (P:) Probab=25.30 E-value=11 Score=19.15 Aligned_cols=17 Identities=47% Similarity=0.798 Sum_probs=13.6 Q ss_pred CEEEEECCCCCEEEEEE Q ss_conf 23899867551100335 Q 537021.9.peg.1 28 PKWILLSPNNVMAPLNL 44 (48) Q Consensus 28 pkwillspnnvmaplnl 44 (48) .-|-||..|||..||-- T Consensus 5 dlwkllpennvlsplps 21 (26) T 3dac_P 5 DLWKLLPENNVLSPLPS 21 (26) T ss_pred HHHHHCCCCCCCCCCCC T ss_conf 89987754575677865 No 2 >>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:53-101) Probab=10.81 E-value=1.4e+02 Score=13.87 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=15.2 Q ss_pred CCCCEEECC-CCCCCCEEEECCE Q ss_conf 353023135-3100215665323 Q 537021.9.peg.1 8 HPNRVMASN-AETARNAFLIHPK 29 (48) Q Consensus 8 hpnrvmasn-aetarnaflihpk 29 (48) ++|+|.|-+ |+|.+-..--.|+ T Consensus 19 ~~n~v~AlD~A~TG~~~W~ydp~ 41 (49) T 1w6s_A 19 FPNNTFALGLDDPGTILWQDKPK 41 (49) T ss_dssp TTTCEEEEETTCTTSEEEEECCC T ss_pred CCCCEEEEECCCCCCEEEECCCC T ss_conf 89958999479998678862487 No 3 >>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=8.49 E-value=96 Score=14.62 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=23.3 Q ss_pred EEEEECCCCEEECCCCCCCCEEEECCEEEEEC Q ss_conf 06887353023135310021566532389986 Q 537021.9.peg.1 3 TKVMVHPNRVMASNAETARNAFLIHPKWILLS 34 (48) Q Consensus 3 tkvmvhpnrvmasnaetarnaflihpkwills 34 (48) |-+.+.+++..--+...+++...++|.|+.-+ T Consensus 51 thli~~~~~~~k~~~a~~~~~~iV~~~Wl~~~ 82 (109) T 2cou_A 51 THLIVEENTVKDLPFEPSKKLFVVKQEWFWGS 82 (109) T ss_dssp SEEEECTTTCSSCSSCCCTTSEEECHHHHHHH T ss_pred CEEEEECCCCCHHHHHHHCCCCCCCHHHHHHH T ss_conf 17997436870467888557465999999999 No 4 >>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:658-767) Probab=8.35 E-value=1.3e+02 Score=14.02 Aligned_cols=31 Identities=23% Similarity=0.682 Sum_probs=20.5 Q ss_pred CEEEEECCCCEEEC-------------CCCCCCCEEEECCEEEE Q ss_conf 60688735302313-------------53100215665323899 Q 537021.9.peg.1 2 KTKVMVHPNRVMAS-------------NAETARNAFLIHPKWIL 32 (48) Q Consensus 2 ktkvmvhpnrvmas-------------naetarnaflihpkwil 32 (48) +++|.+||.-++.. +.+-.|+.--|.|.|++ T Consensus 19 ~~~v~iHPsS~L~~~p~~Vvy~Elv~Tsk~Y~r~vt~I~~~Wl~ 62 (110) T 3kx2_B 19 NQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLI 62 (110) T ss_dssp CCEEEECTTSCCCTTCSEEEEEEEEESSSEEEEEEEECCHHHHH T ss_pred CCEEEECCCHHCCCCCCEEEEEEEEEEEHHHEEECCEECHHHHH T ss_conf 92799768210499989899997777800010350136799999 No 5 >>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} (A:1-149) Probab=8.10 E-value=29 Score=17.06 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=21.5 Q ss_pred CCEEEEECCCCEEECCCCCCCCEEEECC Q ss_conf 9606887353023135310021566532 Q 537021.9.peg.1 1 MKTKVMVHPNRVMASNAETARNAFLIHP 28 (48) Q Consensus 1 mktkvmvhpnrvmasnaetarnaflihp 28 (48) |++.--.||..+..-+.+.-|..|||.. T Consensus 6 ~~~r~a~~p~~~k~~~T~~LR~~flie~ 33 (149) T 1ywk_A 6 METRYTHSPADIRHYSTEQLRDEFLVEK 33 (149) T ss_dssp EEEECCCCHHHHTTCCHHHHHHHHEESC T ss_pred EEEECCCCHHHHHHCCHHHHHHHHCHHH T ss_conf 3553269989970179999997504654 No 6 >>2gs0_B Cellular tumor antigen P53; TFIIH, TFB1, activation, transcription, PH domain; NMR {Homo sapiens} (B:) Probab=7.95 E-value=72 Score=15.21 Aligned_cols=14 Identities=57% Similarity=1.056 Sum_probs=10.1 Q ss_pred EEEEECCCCCEEEE Q ss_conf 38998675511003 Q 537021.9.peg.1 29 KWILLSPNNVMAPL 42 (48) Q Consensus 29 kwillspnnvmapl 42 (48) -|-||-+|||..+. T Consensus 3 LWkLLPennvLS~~ 16 (54) T 2gs0_B 3 LWKLLPENNVLSPL 16 (54) T ss_pred HHHHCCCCCCCCCC T ss_conf 77658754545666 No 7 >>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} (A:) Probab=7.85 E-value=1.4e+02 Score=13.86 Aligned_cols=10 Identities=0% Similarity=-0.297 Sum_probs=0.0 Q ss_pred EEEECCEEEE Q ss_conf 5665323899 Q 537021.9.peg.1 23 AFLIHPKWIL 32 (48) Q Consensus 23 aflihpkwil 32 (48) +.||+++||| T Consensus 19 GsLI~~~wVL 28 (189) T 2ea3_A 19 IGFAVNGGFI 28 (189) T ss_dssp CCEEETTEEE T ss_pred EEEEECCCEE T ss_conf 6999779999 No 8 >>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} (A:366-422) Probab=6.24 E-value=1.1e+02 Score=14.31 Aligned_cols=5 Identities=100% Similarity=1.902 Sum_probs=0.0 Q ss_pred EEECC Q ss_conf 66532 Q 537021.9.peg.1 24 FLIHP 28 (48) Q Consensus 24 flihp 28 (48) ||||| T Consensus 20 FLiHP 24 (57) T 1xr7_A 20 FLIHP 24 (57) T ss_dssp TSEEE T ss_pred EEEEE T ss_conf 48984 No 9 >>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} (A:) Probab=5.90 E-value=2.5e+02 Score=12.64 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=0.0 Q ss_pred EEEECCEEEE Q ss_conf 5665323899 Q 537021.9.peg.1 23 AFLIHPKWIL 32 (48) Q Consensus 23 aflihpkwil 32 (48) ..||++.||| T Consensus 38 GtLIs~~~VL 47 (268) T 1wcz_A 38 GVVVGKDTLL 47 (268) T ss_dssp EEECSSSEEE T ss_pred EEEEECCEEE T ss_conf 9999799999 No 10 >>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens} (B:) Probab=5.43 E-value=74 Score=15.17 Aligned_cols=12 Identities=58% Similarity=1.179 Sum_probs=0.0 Q ss_pred EEEECCCCCEEE Q ss_conf 899867551100 Q 537021.9.peg.1 30 WILLSPNNVMAP 41 (48) Q Consensus 30 willspnnvmap 41 (48) |-||.+|||..+ T Consensus 23 WkLLP~nnvLs~ 34 (39) T 2k8f_B 23 WKLLPENNVLSP 34 (39) T ss_dssp HHTCSSSCCCCC T ss_pred HHHCCCCCCCCC T ss_conf 986784343544 Done!