RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.1087_1
         (48 letters)



>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1;
          structural genomics, nysgxrc target T1814, PSI, protein
          structure initiative; 2.95A {Enterococcus faecalis}
          (A:1-149)
          Length = 149

 Score = 25.1 bits (55), Expect = 3.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 1  MKTKVMVHPNRVMASNAETARNAFLI 26
          M+T+    P  +   + E  R+ FL+
Sbjct: 6  METRYTHSPADIRHYSTEQLRDEFLV 31


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 313,035
Number of extensions: 7727
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 48
Length of database: 4,956,049
Length adjustment: 19
Effective length of query: 29
Effective length of database: 4,313,754
Effective search space: 125098866
Effective search space used: 125098866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)