RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1087_1
         (48 letters)



>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase
          KduI {Enterococcus faecalis [TaxId: 1351]}
          Length = 260

 Score = 23.6 bits (51), Expect = 5.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 1  MKTKVMVHPNRVMASNAETARNAFLI 26
          M+T+    P  +   + E  R+ FL+
Sbjct: 1  METRYTHSPADIRHYSTEQLRDEFLV 26


>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId:
           29459]}
          Length = 332

 Score = 22.5 bits (48), Expect = 9.8
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 15  SNAETARNAFLIHPKWILLSP 35
            +  T  N   I P     SP
Sbjct: 234 GDVLTGVNTVAIRPAKFDRSP 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 153,634
Number of extensions: 3835
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 48
Length of database: 2,407,596
Length adjustment: 20
Effective length of query: 28
Effective length of database: 2,132,996
Effective search space: 59723888
Effective search space used: 59723888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)