Query 537021.9.peg.1090_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:14:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1090.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1fjk_A Cardiac phospholamban; 49.5 8.8 0.00026 19.5 1.7 15 9-24 34-48 (52) 2 >1qey_A MNT-C, protein (regula 14.2 1E+02 0.0031 13.9 2.6 16 20-35 6-21 (31) 3 >2i09_A Phosphopentomutase; st 11.4 1E+02 0.0031 13.9 1.3 14 17-30 73-86 (121) 4 >2ohc_A TRNA-splicing endonucl 11.0 1.2E+02 0.0035 13.6 1.4 12 6-17 38-49 (67) 5 >2rdd_B UPF0092 membrane prote 9.6 1.5E+02 0.0044 13.1 1.9 24 9-32 11-34 (37) 6 >1iup_A META-cleavage product 8.9 1.2E+02 0.0035 13.6 0.8 14 22-35 17-30 (60) 7 >1es9_A PAF-AH, platelet-activ 7.0 1.9E+02 0.0057 12.4 1.2 13 4-16 22-34 (51) 8 >2puj_A 2-hydroxy-6-OXO-6-phen 6.7 1.7E+02 0.0051 12.7 0.8 15 22-36 22-36 (76) 9 >3f2b_A DNA-directed DNA polym 6.1 1.7E+02 0.005 12.8 0.5 9 19-27 42-50 (80) 10 >1u2e_A 2-hydroxy-6-ketonona-2 5.6 1.4E+02 0.0041 13.2 -0.1 12 23-34 23-34 (75) No 1 >>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} (A:) Probab=49.46 E-value=8.8 Score=19.55 Aligned_cols=15 Identities=73% Similarity=1.238 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q 537021.9.peg.1 9 LFCLILYFLLLKICEN 24 (38) Q Consensus 9 lfclilyflllkicen 24 (38) -|||||.+||| ||-- T Consensus 34 nfclili~lll-icii 48 (52) T 1fjk_A 34 NFCLILIFLLL-ICII 48 (52) T ss_dssp HHHHHHHHHHH-HHHH T ss_pred HHHHHHHHHHH-HHHH T ss_conf 99999999999-9999 No 2 >>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} (A:) Probab=14.20 E-value=1e+02 Score=13.90 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999989 Q 537021.9.peg.1 20 KICENVRKIVKSMVFL 35 (38) Q Consensus 20 kicenvrkivksmvfl 35 (38) .+.+.-...||.|||- T Consensus 6 r~adeqs~lvkkmvfd 21 (31) T 1qey_A 6 RLADEQSELVKKMVFD 21 (31) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9888899999999999 No 3 >>2i09_A Phosphopentomutase; structural genomics, target T1865, NYSGXRC, PSI, protein structure initiative; 2.00A {Streptococcus mutans} (A:109-229) Probab=11.44 E-value=1e+02 Score=13.87 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q 537021.9.peg.1 17 LLLKICENVRKIVK 30 (38) Q Consensus 17 lllkicenvrkivk 30 (38) -|.++|+-.|+++. T Consensus 73 ~Ly~~C~~aR~~l~ 86 (121) T 2i09_A 73 ELYRICEYARSITL 86 (121) T ss_dssp HHHHHHHHHHHHCS T ss_pred HHCCCCCCCCCCCC T ss_conf 32011211343466 No 4 >>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum dsm 1728} PDB: 2ohe_A (A:1-67) Probab=11.05 E-value=1.2e+02 Score=13.62 Aligned_cols=12 Identities=58% Similarity=1.065 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 026999999999 Q 537021.9.peg.1 6 CDPLFCLILYFL 17 (38) Q Consensus 6 cdplfclilyfl 17 (38) -||.-|+-|||- T Consensus 38 LdpYEclYLYfK 49 (67) T 2ohc_A 38 LDPYECLYLYFK 49 (67) T ss_dssp CCHHHHHHHHHT T ss_pred EEHHHHHHHHHC T ss_conf 838998899872 No 5 >>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:) Probab=9.64 E-value=1.5e+02 Score=13.08 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q 537021.9.peg.1 9 LFCLILYFLLLKICENVRKIVKSM 32 (38) Q Consensus 9 lfclilyflllkicenvrkivksm 32 (38) ++-++.||++..--..-+|-.+.| T Consensus 11 ~i~~ifYFllIRPQ~Kr~Ke~~~m 34 (37) T 2rdd_B 11 VFGLIFYFMILRPQQKRTKEHKKL 34 (37) T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTG T ss_pred HHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 999999999937217889999998 No 6 >>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} (A:133-192) Probab=8.92 E-value=1.2e+02 Score=13.58 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999989 Q 537021.9.peg.1 22 CENVRKIVKSMVFL 35 (38) Q Consensus 22 cenvrkivksmvfl 35 (38) -||.|+++..|||= T Consensus 17 ~e~mr~~i~~~vyD 30 (60) T 1iup_A 17 IENMRNLLDIFAYD 30 (60) T ss_dssp HHHHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHC T ss_conf 89999999986302 No 7 >>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} (A:182-232) Probab=6.95 E-value=1.9e+02 Score=12.45 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=6.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 5502699999999 Q 537021.9.peg.1 4 AMCDPLFCLILYF 16 (38) Q Consensus 4 amcdplfclilyf 16 (38) ..|.||+.+++-. T Consensus 22 ki~~pl~elL~ql 34 (51) T 1es9_A 22 PVCRALHSLLLRL 34 (51) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999998 No 8 >>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase; C-C bond hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans LB400} PDB: 2pu7_A* 2puh_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A (A:144-219) Probab=6.70 E-value=1.7e+02 Score=12.72 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999896 Q 537021.9.peg.1 22 CENVRKIVKSMVFLQ 36 (38) Q Consensus 22 cenvrkivksmvflq 36 (38) -||.|+.+..|||=+ T Consensus 22 ~E~mr~~l~~mvyD~ 36 (76) T 2puj_A 22 YETLKQMLQVFLYDQ 36 (76) T ss_dssp HHHHHHHHHHHCSCG T ss_pred HHHHHHHHHHHHCCC T ss_conf 457899999851375 No 9 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:776-855) Probab=6.12 E-value=1.7e+02 Score=12.76 Aligned_cols=9 Identities=67% Similarity=0.892 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q 537021.9.peg.1 19 LKICENVRK 27 (38) Q Consensus 19 lkicenvrk 27 (38) .+|-|+||| T Consensus 42 F~IME~VRK 50 (80) T 3f2b_A 42 FKIMESVRK 50 (80) T ss_dssp HHHHHHHTT T ss_pred HHHHHHHHH T ss_conf 889999997 No 10 >>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} (A:147-221) Probab=5.64 E-value=1.4e+02 Score=13.21 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999998 Q 537021.9.peg.1 23 ENVRKIVKSMVF 34 (38) Q Consensus 23 envrkivksmvf 34 (38) ||.|+.+..||| T Consensus 23 E~mr~~l~~fvy 34 (75) T 1u2e_A 23 ENLKLMMDIFVF 34 (75) T ss_dssp HHHHHHHHTTSS T ss_pred HHHHHHHHHHCC T ss_conf 234554444203 Done!