Query         537021.9.peg.1090_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 07:52:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1090.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1fjk_A Cardiac phospholamban;   46.6     7.3 0.00031   19.2   1.7   15    9-24     34-48  (52)
  2 2rdd_B UPF0092 membrane protei  19.9      43  0.0018   15.1   1.9   25    9-33     11-35  (37)
  3 2h7b_A Core-binding factor, ML   6.5 1.5E+02  0.0061   12.3   2.4   16   19-34     25-40  (105)
  4 2d5u_A N-glycanase 1; pngase,    6.5 1.5E+02  0.0062   12.3   1.9   14   14-27     36-49  (124)
  5 1qey_A MNT-C, protein (regulat   6.3 1.5E+02  0.0063   12.2   2.6   16   20-35      6-21  (31)
  6 2p6v_A Transcription initiatio   5.3 1.7E+02  0.0073   11.9   2.4   15   20-34     41-55  (114)
  7 3epo_A Thiamine biosynthesis p   4.5 1.4E+02  0.0059   12.4   0.0   21    3-29    561-581 (612)
  8 3b4s_A Protein LUXT; APC91483.   4.3 2.1E+02  0.0087   11.5   2.7   21    3-23     30-50  (94)
  9 3bz1_M PSII-M, photosystem II    4.3 2.1E+02  0.0087   11.5   1.8   15    2-16     13-27  (36)
 10 1nov_D Nodamura virus coat pro   3.7 2.3E+02  0.0098   11.2   1.5    9   23-31      5-13  (44)

No 1  
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=46.63  E-value=7.3  Score=19.17  Aligned_cols=15  Identities=73%  Similarity=1.238  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q 537021.9.peg.1    9 LFCLILYFLLLKICEN   24 (38)
Q Consensus         9 lfclilyflllkicen   24 (38)
                      -|||||.+||| ||--
T Consensus        34 nf~lili~lll-icii   48 (52)
T 1fjk_A           34 NFCLILIFLLL-ICII   48 (52)
T ss_dssp             HHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHH-HHHH
T ss_conf             99999999999-9999


No 2  
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.89  E-value=43  Score=15.10  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999
Q 537021.9.peg.1    9 LFCLILYFLLLKICENVRKIVKSMV   33 (38)
Q Consensus         9 lfclilyflllkicenvrkivksmv   33 (38)
                      ++..|.||++..--..-.|-.++|+
T Consensus        11 ~~f~ifYFliIRPQ~Kr~Ke~~~m~   35 (37)
T 2rdd_B           11 VFGLIFYFMILRPQQKRTKEHKKLM   35 (37)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             9999999999570177799999987


No 3  
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=6.55  E-value=1.5e+02  Score=12.31  Aligned_cols=16  Identities=38%  Similarity=0.430  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998
Q 537021.9.peg.1   19 LKICENVRKIVKSMVF   34 (38)
Q Consensus        19 lkicenvrkivksmvf   34 (38)
                      -.+.+|||..|.+.+-
T Consensus        25 pe~~~~Vr~LV~~L~~   40 (105)
T 2h7b_A           25 PEIGERVRTLVLGLVN   40 (105)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             2588999999999980


No 4  
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=6.45  E-value=1.5e+02  Score=12.28  Aligned_cols=14  Identities=29%  Similarity=0.373  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q 537021.9.peg.1   14 LYFLLLKICENVRK   27 (38)
Q Consensus        14 lyflllkicenvrk   27 (38)
                      -.-.|+|||+|+.+
T Consensus        36 a~~~L~kil~NIl~   49 (124)
T 2d5u_A           36 ASKLLLTYADNILR   49 (124)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999972


No 5  
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=6.27  E-value=1.5e+02  Score=12.22  Aligned_cols=16  Identities=31%  Similarity=0.611  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999989
Q 537021.9.peg.1   20 KICENVRKIVKSMVFL   35 (38)
Q Consensus        20 kicenvrkivksmvfl   35 (38)
                      .+.+.-...||.|||-
T Consensus         6 r~ad~qse~vkk~vfd   21 (31)
T 1qey_A            6 RLADEQSELVKKMVFD   21 (31)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9888899999999999


No 6  
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=5.29  E-value=1.7e+02  Score=11.89  Aligned_cols=15  Identities=20%  Similarity=0.405  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999998
Q 537021.9.peg.1   20 KICENVRKIVKSMVF   34 (38)
Q Consensus        20 kicenvrkivksmvf   34 (38)
                      .+-+|||.+|.+++-
T Consensus        41 e~~~~Vr~LV~~L~~   55 (114)
T 2p6v_A           41 ETAANVXELVQNLLD   55 (114)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             899999999999997


No 7  
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Probab=4.46  E-value=1.4e+02  Score=12.38  Aligned_cols=21  Identities=43%  Similarity=0.955  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             655026999999999999999999999
Q 537021.9.peg.1    3 FAMCDPLFCLILYFLLLKICENVRKIV   29 (38)
Q Consensus         3 famcdplfclilyflllkicenvrkiv   29 (38)
                      -.||.|-||-+      ||.+.+|+..
T Consensus       561 CsMCGp~fCam------ki~~~~~~~~  581 (612)
T 3epo_A          561 CSMCGPKFCSM------KISQEVRDFA  581 (612)
T ss_dssp             ---------------------------
T ss_pred             ECCCCCCCCHH------HHHHHHHHHH
T ss_conf             27898330556------7899999998


No 8  
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=4.29  E-value=2.1e+02  Score=11.50  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             655026999999999999999
Q 537021.9.peg.1    3 FAMCDPLFCLILYFLLLKICE   23 (38)
Q Consensus         3 famcdplfclilyflllkice   23 (38)
                      -||-||-|+-||-.+...||-
T Consensus        30 ~Al~~~~F~AILRL~F~h~v~   50 (94)
T 3b4s_A           30 KALEDSEFLAILRLLFHHIVT   50 (94)
T ss_dssp             HHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHC
T ss_conf             998578999999999998863


No 9  
>3bz1_M PSII-M, photosystem II reaction center protein M; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_M* 2axt_M* 3bz2_M* 3kzi_M* 3a0b_M* 3a0h_M*
Probab=4.25  E-value=2.1e+02  Score=11.48  Aligned_cols=15  Identities=40%  Similarity=0.879  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             365502699999999
Q 537021.9.peg.1    2 LFAMCDPLFCLILYF   16 (38)
Q Consensus         2 lfamcdplfclilyf   16 (38)
                      ||-.-...|-+|||.
T Consensus        13 LFilvPt~FLlILyv   27 (36)
T 3bz1_M           13 LFVLVPSVFLIILYV   27 (36)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHEE
T ss_conf             999998888765314


No 10 
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus}
Probab=3.68  E-value=2.3e+02  Score=11.21  Aligned_cols=9  Identities=67%  Similarity=0.863  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q 537021.9.peg.1   23 ENVRKIVKS   31 (38)
Q Consensus        23 envrkivks   31 (38)
                      |.|+.|.||
T Consensus         5 ERVk~ilKs   13 (44)
T 1nov_D            5 ERVRSILKS   13 (44)
T ss_pred             HHHHHHHHH
T ss_conf             999999998


Done!