Query 537021.9.peg.1090_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 07:52:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1090.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1fjk_A Cardiac phospholamban; 46.6 7.3 0.00031 19.2 1.7 15 9-24 34-48 (52) 2 2rdd_B UPF0092 membrane protei 19.9 43 0.0018 15.1 1.9 25 9-33 11-35 (37) 3 2h7b_A Core-binding factor, ML 6.5 1.5E+02 0.0061 12.3 2.4 16 19-34 25-40 (105) 4 2d5u_A N-glycanase 1; pngase, 6.5 1.5E+02 0.0062 12.3 1.9 14 14-27 36-49 (124) 5 1qey_A MNT-C, protein (regulat 6.3 1.5E+02 0.0063 12.2 2.6 16 20-35 6-21 (31) 6 2p6v_A Transcription initiatio 5.3 1.7E+02 0.0073 11.9 2.4 15 20-34 41-55 (114) 7 3epo_A Thiamine biosynthesis p 4.5 1.4E+02 0.0059 12.4 0.0 21 3-29 561-581 (612) 8 3b4s_A Protein LUXT; APC91483. 4.3 2.1E+02 0.0087 11.5 2.7 21 3-23 30-50 (94) 9 3bz1_M PSII-M, photosystem II 4.3 2.1E+02 0.0087 11.5 1.8 15 2-16 13-27 (36) 10 1nov_D Nodamura virus coat pro 3.7 2.3E+02 0.0098 11.2 1.5 9 23-31 5-13 (44) No 1 >1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A Probab=46.63 E-value=7.3 Score=19.17 Aligned_cols=15 Identities=73% Similarity=1.238 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q 537021.9.peg.1 9 LFCLILYFLLLKICEN 24 (38) Q Consensus 9 lfclilyflllkicen 24 (38) -|||||.+||| ||-- T Consensus 34 nf~lili~lll-icii 48 (52) T 1fjk_A 34 NFCLILIFLLL-ICII 48 (52) T ss_dssp HHHHHHHHHHH-HHHH T ss_pred HHHHHHHHHHH-HHHH T ss_conf 99999999999-9999 No 2 >2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} Probab=19.89 E-value=43 Score=15.10 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999 Q 537021.9.peg.1 9 LFCLILYFLLLKICENVRKIVKSMV 33 (38) Q Consensus 9 lfclilyflllkicenvrkivksmv 33 (38) ++..|.||++..--..-.|-.++|+ T Consensus 11 ~~f~ifYFliIRPQ~Kr~Ke~~~m~ 35 (37) T 2rdd_B 11 VFGLIFYFMILRPQQKRTKEHKKLM 35 (37) T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTGG T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 9999999999570177799999987 No 3 >2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A Probab=6.55 E-value=1.5e+02 Score=12.31 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999998 Q 537021.9.peg.1 19 LKICENVRKIVKSMVF 34 (38) Q Consensus 19 lkicenvrkivksmvf 34 (38) -.+.+|||..|.+.+- T Consensus 25 pe~~~~Vr~LV~~L~~ 40 (105) T 2h7b_A 25 PEIGERVRTLVLGLVN 40 (105) T ss_dssp HHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHH T ss_conf 2588999999999980 No 4 >2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1 Probab=6.45 E-value=1.5e+02 Score=12.28 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q 537021.9.peg.1 14 LYFLLLKICENVRK 27 (38) Q Consensus 14 lyflllkicenvrk 27 (38) -.-.|+|||+|+.+ T Consensus 36 a~~~L~kil~NIl~ 49 (124) T 2d5u_A 36 ASKLLLTYADNILR 49 (124) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999999972 No 5 >1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1 Probab=6.27 E-value=1.5e+02 Score=12.22 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999989 Q 537021.9.peg.1 20 KICENVRKIVKSMVFL 35 (38) Q Consensus 20 kicenvrkivksmvfl 35 (38) .+.+.-...||.|||- T Consensus 6 r~ad~qse~vkk~vfd 21 (31) T 1qey_A 6 RLADEQSELVKKMVFD 21 (31) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9888899999999999 No 6 >2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1 Probab=5.29 E-value=1.7e+02 Score=11.89 Aligned_cols=15 Identities=20% Similarity=0.405 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999998 Q 537021.9.peg.1 20 KICENVRKIVKSMVF 34 (38) Q Consensus 20 kicenvrkivksmvf 34 (38) .+-+|||.+|.+++- T Consensus 41 e~~~~Vr~LV~~L~~ 55 (114) T 2p6v_A 41 ETAANVXELVQNLLD 55 (114) T ss_dssp HHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHH T ss_conf 899999999999997 No 7 >3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* Probab=4.46 E-value=1.4e+02 Score=12.38 Aligned_cols=21 Identities=43% Similarity=0.955 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 655026999999999999999999999 Q 537021.9.peg.1 3 FAMCDPLFCLILYFLLLKICENVRKIV 29 (38) Q Consensus 3 famcdplfclilyflllkicenvrkiv 29 (38) -.||.|-||-+ ||.+.+|+.. T Consensus 561 CsMCGp~fCam------ki~~~~~~~~ 581 (612) T 3epo_A 561 CSMCGPKFCSM------KISQEVRDFA 581 (612) T ss_dssp --------------------------- T ss_pred ECCCCCCCCHH------HHHHHHHHHH T ss_conf 27898330556------7899999998 No 8 >3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633} Probab=4.29 E-value=2.1e+02 Score=11.50 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 655026999999999999999 Q 537021.9.peg.1 3 FAMCDPLFCLILYFLLLKICE 23 (38) Q Consensus 3 famcdplfclilyflllkice 23 (38) -||-||-|+-||-.+...||- T Consensus 30 ~Al~~~~F~AILRL~F~h~v~ 50 (94) T 3b4s_A 30 KALEDSEFLAILRLLFHHIVT 50 (94) T ss_dssp HHTTSHHHHHHHHHHHHHHHH T ss_pred HHHHCHHHHHHHHHHHHHHHC T ss_conf 998578999999999998863 No 9 >3bz1_M PSII-M, photosystem II reaction center protein M; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_M* 2axt_M* 3bz2_M* 3kzi_M* 3a0b_M* 3a0h_M* Probab=4.25 E-value=2.1e+02 Score=11.48 Aligned_cols=15 Identities=40% Similarity=0.879 Sum_probs=7.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 365502699999999 Q 537021.9.peg.1 2 LFAMCDPLFCLILYF 16 (38) Q Consensus 2 lfamcdplfclilyf 16 (38) ||-.-...|-+|||. T Consensus 13 LFilvPt~FLlILyv 27 (36) T 3bz1_M 13 LFVLVPSVFLIILYV 27 (36) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHEE T ss_conf 999998888765314 No 10 >1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus} Probab=3.68 E-value=2.3e+02 Score=11.21 Aligned_cols=9 Identities=67% Similarity=0.863 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q 537021.9.peg.1 23 ENVRKIVKS 31 (38) Q Consensus 23 envrkivks 31 (38) |.|+.|.|| T Consensus 5 ERVk~ilKs 13 (44) T 1nov_D 5 ERVRSILKS 13 (44) T ss_pred HHHHHHHHH T ss_conf 999999998 Done!