Query 537021.9.peg.1090_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 08:44:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1090.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2i09a2 d.327.1.1 (A:108-226) 5.3 1E+02 0.0073 11.9 1.9 13 17-29 74-86 (119) 2 d1ta0a_ c.108.1.16 (A:) Carbox 4.1 80 0.0058 12.4 -0.3 23 8-30 158-180 (181) 3 d2dlba1 b.174.1.1 (A:2002-2071 3.5 1.4E+02 0.01 11.1 0.9 10 16-25 27-36 (70) 4 d2axtm1 f.23.35.1 (M:1-36) Pho 3.3 1.5E+02 0.011 11.0 1.8 14 3-16 14-27 (36) 5 d2p6va1 a.277.1.1 (A:582-678) 3.3 1.5E+02 0.011 11.0 2.4 16 19-34 32-47 (97) 6 d2pp4a1 a.277.1.1 (A:119-225) 2.9 1.6E+02 0.012 10.8 2.2 14 20-33 25-38 (107) 7 d1j2jb_ a.7.8.1 (B:) ADP-ribos 2.4 1.9E+02 0.014 10.4 1.2 10 25-34 26-35 (41) 8 d1ehsa_ g.2.1.1 (A:) Heat-stab 2.3 1.9E+02 0.014 10.4 1.7 12 21-32 9-20 (48) 9 d2v9va1 a.4.5.35 (A:377-437) C 2.2 2E+02 0.015 10.3 1.7 13 22-34 31-43 (61) 10 d2jdig1 c.49.2.1 (G:1-272) ATP 2.2 2.1E+02 0.015 10.2 2.4 14 19-32 10-23 (272) No 1 >d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]} Probab=5.29 E-value=1e+02 Score=11.90 Aligned_cols=13 Identities=46% Similarity=0.782 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q 537021.9.peg.1 17 LLLKICENVRKIV 29 (38) Q Consensus 17 lllkicenvrkiv 29 (38) -|.++||..|++. T Consensus 74 ~Ly~~C~~aR~~~ 86 (119) T d2i09a2 74 ELYRICEYARSIT 86 (119) T ss_dssp HHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999985 No 2 >d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.10 E-value=80 Score=12.41 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 69999999999999999999999 Q 537021.9.peg.1 8 PLFCLILYFLLLKICENVRKIVK 30 (38) Q Consensus 8 plfclilyflllkicenvrkivk 30 (38) -|..++-|+--++-+++||++.| T Consensus 158 eL~~l~~~L~~l~~~~DVR~~l~ 180 (181) T d1ta0a_ 158 ELHDLLPFFEQLSRVDDVYSVLR 180 (181) T ss_dssp HHHHHHHHHHHHTTCSCHHHHHC T ss_pred HHHHHHHHHHHHCCCCCHHHHHC T ss_conf 79999999999764876778865 No 3 >d2dlba1 b.174.1.1 (A:2002-2071) Uncharacterized protein YopT {Bacillus subtilis [TaxId: 1423]} Probab=3.45 E-value=1.4e+02 Score=11.09 Aligned_cols=10 Identities=50% Similarity=0.989 Sum_probs=7.1 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q 537021.9.peg.1 16 FLLLKICENV 25 (38) Q Consensus 16 flllkicenv 25 (38) -|.-.||||. T Consensus 27 tlvtricenl 36 (70) T d2dlba1 27 TLVTRICENL 36 (70) T ss_dssp HHHHHHHHTT T ss_pred HHHHHHHHHH T ss_conf 9999999988 No 4 >d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]} Probab=3.33 E-value=1.5e+02 Score=11.03 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 65502699999999 Q 537021.9.peg.1 3 FAMCDPLFCLILYF 16 (38) Q Consensus 3 famcdplfclilyf 16 (38) |-.-...|-+|||. T Consensus 14 FilvPt~FLliLyv 27 (36) T d2axtm1 14 FVLVPSVFLIILYV 27 (36) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHE T ss_conf 99998999887512 No 5 >d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.26 E-value=1.5e+02 Score=10.99 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999998 Q 537021.9.peg.1 19 LKICENVRKIVKSMVF 34 (38) Q Consensus 19 lkicenvrkivksmvf 34 (38) -.+-+|||..|.+++- T Consensus 32 pe~~~~Vr~LV~~L~~ 47 (97) T d2p6va1 32 TETAANVKELVQNLLD 47 (97) T ss_dssp HHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHH T ss_conf 3488999999999983 No 6 >d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]} Probab=2.89 E-value=1.6e+02 Score=10.76 Aligned_cols=14 Identities=43% Similarity=0.620 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q 537021.9.peg.1 20 KICENVRKIVKSMV 33 (38) Q Consensus 20 kicenvrkivksmv 33 (38) .+.+|||..|.+.+ T Consensus 25 e~~~~Vr~LV~~L~ 38 (107) T d2pp4a1 25 EIGERVRTLVLGLV 38 (107) T ss_dssp THHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 38899999999998 No 7 >d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.39 E-value=1.9e+02 Score=10.42 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=6.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999999998 Q 537021.9.peg.1 25 VRKIVKSMVF 34 (38) Q Consensus 25 vrkivksmvf 34 (38) ..+..||||- T Consensus 26 ANrLIK~mVk 35 (41) T d1j2jb_ 26 ANKLIKEMVQ 35 (41) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999988 No 8 >d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]} Probab=2.35 E-value=1.9e+02 Score=10.39 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q 537021.9.peg.1 21 ICENVRKIVKSM 32 (38) Q Consensus 21 icenvrkivksm 32 (38) .||..|.|.|.- T Consensus 9 lcehyrqiakes 20 (48) T d1ehsa_ 9 LCEHYRQIAKES 20 (48) T ss_dssp SHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 9 >d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=2.20 E-value=2e+02 Score=10.27 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999998 Q 537021.9.peg.1 22 CENVRKIVKSMVF 34 (38) Q Consensus 22 cenvrkivksmvf 34 (38) -|..||...||.- T Consensus 31 leetrkllqsmaa 43 (61) T d2v9va1 31 LEETRKLLQSMAA 43 (61) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8999999999985 No 10 >d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Probab=2.17 E-value=2.1e+02 Score=10.25 Aligned_cols=14 Identities=57% Similarity=0.733 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q 537021.9.peg.1 19 LKICENVRKIVKSM 32 (38) Q Consensus 19 lkicenvrkivksm 32 (38) .+--++.+||+|.| T Consensus 10 I~Sv~~t~kITkAM 23 (272) T d2jdig1 10 LKSIKNIQKITKSM 23 (272) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99987999999999 Done!