Query 537021.9.peg.1096_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 08:31:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1096.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1n93_X P40 nucleoprotein; RNA 23.0 36 0.0015 15.7 2.1 18 24-41 138-156 (375) 2 1ezj_A Nucleocapsid phosphopro 5.2 1.9E+02 0.0079 12.2 2.3 21 19-39 42-62 (115) 3 2waq_G DNA-directed RNA polyme 3.8 1.7E+02 0.0073 12.3 0.0 15 18-32 115-129 (132) 4 2rji_A Erythrocyte binding ant 3.2 2.8E+02 0.012 11.3 0.8 12 42-53 49-60 (84) 5 2e52_A Type II restriction enz 2.7 2.9E+02 0.012 11.2 0.2 23 14-37 59-81 (300) 6 2kr6_A Presenilin-1; protease, 2.4 3.5E+02 0.015 10.8 1.1 19 15-33 84-102 (176) 7 3eeq_A Putative cobalamin bios 2.3 44 0.0018 15.3 -4.3 20 29-48 55-74 (336) 8 2xpp_B SPT6, chromatin structu 2.2 3.9E+02 0.016 10.6 1.7 23 12-34 6-28 (42) 9 2e72_A POGO transposable eleme 2.1 4E+02 0.017 10.5 0.2 6 26-31 31-36 (49) 10 1jov_A HI1317; hypothetical pr 1.9 4.1E+02 0.017 10.4 0.2 6 48-53 75-80 (270) No 1 >1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X* Probab=23.01 E-value=36 Score=15.66 Aligned_cols=18 Identities=44% Similarity=0.992 Sum_probs=13.3 Q ss_pred HHHHH-HHHHHHHHHHHHH Q ss_conf 55899-9999999999989 Q 537021.9.peg.1 24 ADHIF-YCCMIFIGVIDGV 41 (53) Q Consensus 24 adhif-yccmifigvidgv 41 (53) --.|| +||-..|||.-|- T Consensus 138 ~sSil~hCCdLLIGi~igS 156 (375) T 1n93_X 138 ISSIFSHCCSLLIGVVIGS 156 (375) T ss_dssp HHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 9999999888887542066 No 2 >1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, tetramer, viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1 Probab=5.22 E-value=1.9e+02 Score=12.15 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=16.3 Q ss_pred EEHHHHHHHHHHHHHHHHHHH Q ss_conf 320135589999999999999 Q 537021.9.peg.1 19 FSLKYADHIFYCCMIFIGVID 39 (53) Q Consensus 19 fslkyadhifyccmifigvid 39 (53) -+..||..+|.-|-..|||-- T Consensus 42 ~~a~~a~~~~~l~Gl~l~v~~ 62 (115) T 1ezj_A 42 KSANYAEMTFNVCGLILSAEK 62 (115) T ss_dssp TCCSHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHH T ss_conf 423589999999899975344 No 3 >2waq_G DNA-directed RNA polymerase RPO8 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_G 3hkz_G Probab=3.78 E-value=1.7e+02 Score=12.33 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=11.0 Q ss_pred EEEHHHHHHHHHHHH Q ss_conf 232013558999999 Q 537021.9.peg.1 18 IFSLKYADHIFYCCM 32 (53) Q Consensus 18 ifslkyadhifyccm 32 (53) .-.++--||+++|-+ T Consensus 115 ~~~~~~Md~vY~cv~ 129 (132) T 2waq_G 115 IHQLNVMDHIYFCVK 129 (132) T ss_dssp EBC------------ T ss_pred CCCCCCCCEEEEEEE T ss_conf 157750456999997 No 4 >2rji_A Erythrocyte binding antigen 175; CBP KIX, EBA-175, region VI, protein transport, cell invasion; 1.80A {Plasmodium falciparum} Probab=3.19 E-value=2.8e+02 Score=11.27 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=7.9 Q ss_pred HHHHHHHHCCCC Q ss_conf 998776312359 Q 537021.9.peg.1 42 VRSISSLCFPYF 53 (53) Q Consensus 42 vrsisslcfpyf 53 (53) --|||..|.-|| T Consensus 49 CCsISdYClkyF 60 (84) T 2rji_A 49 CCAVSDYCMSYF 60 (84) T ss_dssp HHHHHHHHHTTS T ss_pred HHHHHHHHHHHC T ss_conf 454898999983 No 5 >2e52_A Type II restriction enzyme HINDIII; type II restriction enzyme HINDIII(E.C.3.1.21.4)/DNA; HET: DNA; 2.00A {Haemophilus influenzae rd KW20} PDB: 3a4k_A* Probab=2.72 E-value=2.9e+02 Score=11.23 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=15.3 Q ss_pred CHHHEEEHHHHHHHHHHHHHHHHH Q ss_conf 612323201355899999999999 Q 537021.9.peg.1 14 SESRIFSLKYADHIFYCCMIFIGV 37 (53) Q Consensus 14 sesrifslkyadhifyccmifigv 37 (53) ||-..|| ||.|-++-||...+|. T Consensus 59 SEEkLyS-KytD~L~s~~~~~mG~ 81 (300) T 2e52_A 59 TQEKLFS-KAGDIVLAKAFQLLNL 81 (300) T ss_dssp HHHHHHH-HHHHHHHHHHHHHTTE T ss_pred HHHHHHH-HHHHHHHHHHHHHCCC T ss_conf 2888999-9999999999998183 No 6 >2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens} Probab=2.41 E-value=3.5e+02 Score=10.78 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=14.9 Q ss_pred HHHEEEHHHHHHHHHHHHH Q ss_conf 1232320135589999999 Q 537021.9.peg.1 15 ESRIFSLKYADHIFYCCMI 33 (53) Q Consensus 15 esrifslkyadhifyccmi 33 (53) |+|-..|-..|-|||--|+ T Consensus 84 ~~~~ikLGlGDFiFYSvLv 102 (176) T 2kr6_A 84 EERGVKLGLGDFIFYSVLV 102 (176) T ss_dssp CSSCCSSCTTTHHHHHHHH T ss_pred CCCCCEECCCCEEEEEEEH T ss_conf 5456031467858754234 No 7 >3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1 Probab=2.33 E-value=44 Score=15.26 Aligned_cols=20 Identities=20% Similarity=0.597 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999899987763 Q 537021.9.peg.1 29 YCCMIFIGVIDGVVRSISSL 48 (53) Q Consensus 29 yccmifigvidgvvrsissl 48 (53) |-+.|||+-...+||.|..+ T Consensus 55 yda~IfI~A~GI~VR~IAP~ 74 (336) T 3eeq_A 55 YDAIVFVMALEGATRIVCKY 74 (336) T ss_dssp CSEEEEESCHHHHHHHHHHH T ss_pred CCEEEEEECHHHHHHHHHHH T ss_conf 88599994448999985555 No 8 >2xpp_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} Probab=2.16 E-value=3.9e+02 Score=10.60 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=0.0 Q ss_pred HCCHHHEEEHHHHHHHHHHHHHH Q ss_conf 22612323201355899999999 Q 537021.9.peg.1 12 KISESRIFSLKYADHIFYCCMIF 34 (53) Q Consensus 12 kisesrifslkyadhifyccmif 34 (53) .|||..|-|..|.|.--.---|| T Consensus 6 eiseesissidy~dr~slf~eif 28 (42) T 2xpp_B 6 EISEESISSIDYGDRDSLFFEIF 28 (42) T ss_dssp ---------CCHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCEEEEEE T ss_conf 54243213357465651566674 No 9 >2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=2.07 E-value=4e+02 Score=10.54 Aligned_cols=6 Identities=67% Similarity=2.134 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 899999 Q 537021.9.peg.1 26 HIFYCC 31 (53) Q Consensus 26 hifycc 31 (53) |.-||| T Consensus 31 HMk~CC 36 (49) T 2e72_A 31 HMCYCC 36 (49) T ss_dssp HHHHHC T ss_pred HHHHCC T ss_conf 455339 No 10 >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Probab=1.94 E-value=4.1e+02 Score=10.45 Aligned_cols=6 Identities=50% Similarity=2.112 Sum_probs=0.0 Q ss_pred HHCCCC Q ss_conf 312359 Q 537021.9.peg.1 48 LCFPYF 53 (53) Q Consensus 48 lcfpyf 53 (53) +|||.| T Consensus 75 v~fP~f 80 (270) T 1jov_A 75 ICYPWF 80 (270) T ss_dssp EEBSSC T ss_pred EECCCC T ss_conf 643215 Done!