RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.1096_1
         (53 letters)



>gnl|CDD|37259 KOG2048, KOG2048, KOG2048, WD40 repeat protein [General function
           prediction only].
          Length = 691

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 7   YYSADKISESRIFSLKYADHIFYCCMIFIGVIDGVVR 43
           Y  +    +SR+ SL +         I  G IDGV+R
Sbjct: 146 YKRSLMRQKSRVLSLSWNPTGTK---IAGGSIDGVIR 179


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.333    0.148    0.472 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 661,941
Number of extensions: 23212
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 4
Length of query: 53
Length of database: 6,263,737
Length adjustment: 26
Effective length of query: 27
Effective length of database: 5,701,903
Effective search space: 153951381
Effective search space used: 153951381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.4 bits)