Query         537021.9.peg.1101_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 08:40:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1101.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jvl_A TRMBF1; coactivator, he  10.4      34  0.0014   16.8  -0.7   20    1-20     87-106 (107)
  2 2npt_B Mitogen-activated prote   7.6 1.4E+02   0.006   13.8   1.5   25    3-29     54-78  (100)
  3 2jrh_A Mitogen-activated prote   7.4 1.4E+02   0.006   13.8   1.5   25    3-29     38-62  (94)
  4 2cu1_A Mitogen-activated prote   6.1 1.5E+02  0.0061   13.7   1.0   25    3-29     42-66  (103)
  5 2c60_A Human mitogen-activated   6.1 1.9E+02  0.0081   13.1   1.6   25    3-29     65-89  (111)
  6 2o8m_C Protease; NS3, NS4A, vi   5.9 1.4E+02  0.0057   13.9   0.7   10   11-20     14-23  (26)
  7 3eud_A Protein SHQ1; CS domain   5.6 1.4E+02  0.0058   13.8   0.6   18   12-30     12-29  (115)
  8 3cl5_A Hemagglutinin-esterase;   5.6 1.8E+02  0.0074   13.3   1.1   10    5-14     13-22  (377)
  9 2h2z_A PP1AB, ORF1AB, replicas   5.3 2.2E+02  0.0091   12.9   2.2   22    5-26     26-47  (306)
 10 3d23_B 3C-like proteinase; mai   5.1 2.3E+02  0.0095   12.8   2.3   23    5-27     28-50  (302)

No 1  
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=10.39  E-value=34  Score=16.81  Aligned_cols=20  Identities=35%  Similarity=0.360  Sum_probs=14.8

Q ss_pred             CCCCCCCEEEECCCEEECCC
Q ss_conf             95322204896461320111
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIPKK   20 (37)
Q Consensus         1 vlkksldwiyfgdemiipkk   20 (37)
                      +|.-+|+|+.+|.+-.-|+|
T Consensus        87 ~L~V~L~~~~~g~p~~~p~k  106 (107)
T 2jvl_A           87 VLNVKLRGANIGAPRLGPKK  106 (107)
T ss_dssp             TTTCBSSSSSTTBCSSSSCC
T ss_pred             HHCCCCCCCCCCCCCCCCCC
T ss_conf             94996766548998889999


No 2  
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=7.57  E-value=1.4e+02  Score=13.80  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=18.3

Q ss_pred             CCCCCEEEECCCEEECCCCCCCCCCCC
Q ss_conf             322204896461320111002435660
Q 537021.9.peg.1    3 KKSLDWIYFGDEMIIPKKLECSSDLNH   29 (37)
Q Consensus         3 kksldwiyfgdemiipkklecssdlnh   29 (37)
                      -.++|-.|-..|++||-+  |-.||++
T Consensus        54 Gq~ldl~y~NnEL~IPl~--~Q~DLDk   78 (100)
T 2npt_B           54 GQSMDLHYTNNELVIPLT--TQDDLDK   78 (100)
T ss_dssp             TSCEEEEEEETTEEEECC--CHHHHHH
T ss_pred             CCCEEEEEECCEEEEECC--CHHHHHH
T ss_conf             881546773673788635--6788999


No 3  
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=7.43  E-value=1.4e+02  Score=13.78  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=18.1

Q ss_pred             CCCCCEEEECCCEEECCCCCCCCCCCC
Q ss_conf             322204896461320111002435660
Q 537021.9.peg.1    3 KKSLDWIYFGDEMIIPKKLECSSDLNH   29 (37)
Q Consensus         3 kksldwiyfgdemiipkklecssdlnh   29 (37)
                      ..++|--|-..|++||-+  |-.||+.
T Consensus        38 Gq~ldl~y~NnEL~IPl~--~Q~DLDk   62 (94)
T 2jrh_A           38 GQPLDLHYMNNELSILLK--NQDDLDK   62 (94)
T ss_dssp             CSSEEEEEECSSCEEECC--SHHHHHH
T ss_pred             CCCEEEEEECCEEEEECC--CHHHHHH
T ss_conf             881547873775888636--7788999


No 4  
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=6.09  E-value=1.5e+02  Score=13.74  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=17.9

Q ss_pred             CCCCCEEEECCCEEECCCCCCCCCCCC
Q ss_conf             322204896461320111002435660
Q 537021.9.peg.1    3 KKSLDWIYFGDEMIIPKKLECSSDLNH   29 (37)
Q Consensus         3 kksldwiyfgdemiipkklecssdlnh   29 (37)
                      -.++|--|-..|++||-+  |-.||+.
T Consensus        42 Gq~ldl~y~NnEL~IPL~--~Q~DLDk   66 (103)
T 2cu1_A           42 GQSMDLHYTNNELVIPLT--TQDDLDK   66 (103)
T ss_dssp             SSCEEEEECSSSSCEECC--SHHHHHH
T ss_pred             CCCEEEEEECCEEEEECC--CHHHHHH
T ss_conf             881535663673788636--6788999


No 5  
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=6.07  E-value=1.9e+02  Score=13.15  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=18.3

Q ss_pred             CCCCCEEEECCCEEECCCCCCCCCCCC
Q ss_conf             322204896461320111002435660
Q 537021.9.peg.1    3 KKSLDWIYFGDEMIIPKKLECSSDLNH   29 (37)
Q Consensus         3 kksldwiyfgdemiipkklecssdlnh   29 (37)
                      -.++|--|-..|++||-+  |-.||+.
T Consensus        65 Gq~ldl~y~NnEl~IPL~--~Q~DLDk   89 (111)
T 2c60_A           65 GQPLDLHYMNNELSILLK--NQDDLDK   89 (111)
T ss_dssp             SSCCEEEEECSSCEEECC--SHHHHHH
T ss_pred             CCCEEEEEECCEEEEECC--CHHHHHH
T ss_conf             881426773672788536--7888999


No 6  
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 2oc0_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 3eyd_B* 3kee_E* ...
Probab=5.90  E-value=1.4e+02  Score=13.89  Aligned_cols=10  Identities=60%  Similarity=0.836  Sum_probs=7.3

Q ss_pred             ECCCEEECCC
Q ss_conf             6461320111
Q 537021.9.peg.1   11 FGDEMIIPKK   20 (37)
Q Consensus        11 fgdemiipkk   20 (37)
                      -|...|||||
T Consensus        14 sgkpaiipkk   23 (26)
T 2o8m_C           14 SGKPAIIPKK   23 (26)
T ss_dssp             SCCCEECCCC
T ss_pred             CCCCEECCCC
T ss_conf             5985044355


No 7  
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=5.62  E-value=1.4e+02  Score=13.85  Aligned_cols=18  Identities=28%  Similarity=0.604  Sum_probs=11.9

Q ss_pred             CCCEEECCCCCCCCCCCCE
Q ss_conf             4613201110024356602
Q 537021.9.peg.1   12 GDEMIIPKKLECSSDLNHV   30 (37)
Q Consensus        12 gdemiipkklecssdlnhv   30 (37)
                      .|.||.|+ .+||.|-.+|
T Consensus        12 ~~~MiTP~-F~isQDd~~V   29 (115)
T 3eud_A           12 DDKMITPR-FSITQDEEFI   29 (115)
T ss_dssp             --CCBCCC-EEEEECSSEE
T ss_pred             CCCEECCE-EEEEECCCEE
T ss_conf             88778750-8988689989


No 8  
>3cl5_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprotein, membrane, transmembrane, virio; HET: NAG SIO; 1.80A {Bovine coronavirus} PDB: 3cl4_A*
Probab=5.61  E-value=1.8e+02  Score=13.34  Aligned_cols=10  Identities=50%  Similarity=1.155  Sum_probs=8.0

Q ss_pred             CCCEEEECCC
Q ss_conf             2204896461
Q 537021.9.peg.1    5 SLDWIYFGDE   14 (37)
Q Consensus         5 sldwiyfgde   14 (37)
                      .-||--|||.
T Consensus        13 t~DW~lFGDS   22 (377)
T 3cl5_A           13 NGDWFLFGDA   22 (377)
T ss_dssp             SSCEEEEEEG
T ss_pred             CCCCEEECCC
T ss_conf             3560230466


No 9  
>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=5.33  E-value=2.2e+02  Score=12.91  Aligned_cols=22  Identities=18%  Similarity=0.665  Sum_probs=20.0

Q ss_pred             CCCEEEECCCEEECCCCCCCCC
Q ss_conf             2204896461320111002435
Q 537021.9.peg.1    5 SLDWIYFGDEMIIPKKLECSSD   26 (37)
Q Consensus         5 sldwiyfgdemiipkklecssd   26 (37)
                      .|.+++.||..+-|+..-|+++
T Consensus        26 ~LNGlWL~d~VyCPRHVi~~~~   47 (306)
T 2h2z_A           26 TLNGLWLDDTVYCPRHVICTAE   47 (306)
T ss_dssp             EEEEEEETTEEEEEGGGGCCTT
T ss_pred             EEEEEEECCEEECCCEEEECCC
T ss_conf             5741775899974652776166


No 10 
>3d23_B 3C-like proteinase; main protease, ATP-binding, cytoplasm, endonuclease, exonuclease, helicase, hydrolase, membrane, metal-binding; HET: 3IH; 2.50A {Human coronavirus HKU1}
Probab=5.06  E-value=2.3e+02  Score=12.81  Aligned_cols=23  Identities=26%  Similarity=0.606  Sum_probs=20.4

Q ss_pred             CCCEEEECCCEEECCCCCCCCCC
Q ss_conf             22048964613201110024356
Q 537021.9.peg.1    5 SLDWIYFGDEMIIPKKLECSSDL   27 (37)
Q Consensus         5 sldwiyfgdemiipkklecssdl   27 (37)
                      .|.+++.||..+-|+..-||++-
T Consensus        28 ~LNGlWL~d~VyCPRHVi~s~~~   50 (302)
T 3d23_B           28 TLNGLWLDDKVYCPRHVICSSSN   50 (302)
T ss_dssp             EEEEEEETTEEEEEGGGGCCSSS
T ss_pred             EEEEEEECCEEECCCEEEECCCC
T ss_conf             57527758999736627863888


Done!