Query 537021.9.peg.1101_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 08:40:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1101.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jvl_A TRMBF1; coactivator, he 10.4 34 0.0014 16.8 -0.7 20 1-20 87-106 (107) 2 2npt_B Mitogen-activated prote 7.6 1.4E+02 0.006 13.8 1.5 25 3-29 54-78 (100) 3 2jrh_A Mitogen-activated prote 7.4 1.4E+02 0.006 13.8 1.5 25 3-29 38-62 (94) 4 2cu1_A Mitogen-activated prote 6.1 1.5E+02 0.0061 13.7 1.0 25 3-29 42-66 (103) 5 2c60_A Human mitogen-activated 6.1 1.9E+02 0.0081 13.1 1.6 25 3-29 65-89 (111) 6 2o8m_C Protease; NS3, NS4A, vi 5.9 1.4E+02 0.0057 13.9 0.7 10 11-20 14-23 (26) 7 3eud_A Protein SHQ1; CS domain 5.6 1.4E+02 0.0058 13.8 0.6 18 12-30 12-29 (115) 8 3cl5_A Hemagglutinin-esterase; 5.6 1.8E+02 0.0074 13.3 1.1 10 5-14 13-22 (377) 9 2h2z_A PP1AB, ORF1AB, replicas 5.3 2.2E+02 0.0091 12.9 2.2 22 5-26 26-47 (306) 10 3d23_B 3C-like proteinase; mai 5.1 2.3E+02 0.0095 12.8 2.3 23 5-27 28-50 (302) No 1 >2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei} Probab=10.39 E-value=34 Score=16.81 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=14.8 Q ss_pred CCCCCCCEEEECCCEEECCC Q ss_conf 95322204896461320111 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIPKK 20 (37) Q Consensus 1 vlkksldwiyfgdemiipkk 20 (37) +|.-+|+|+.+|.+-.-|+| T Consensus 87 ~L~V~L~~~~~g~p~~~p~k 106 (107) T 2jvl_A 87 VLNVKLRGANIGAPRLGPKK 106 (107) T ss_dssp TTTCBSSSSSTTBCSSSSCC T ss_pred HHCCCCCCCCCCCCCCCCCC T ss_conf 94996766548998889999 No 2 >2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2 Probab=7.57 E-value=1.4e+02 Score=13.80 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=18.3 Q ss_pred CCCCCEEEECCCEEECCCCCCCCCCCC Q ss_conf 322204896461320111002435660 Q 537021.9.peg.1 3 KKSLDWIYFGDEMIIPKKLECSSDLNH 29 (37) Q Consensus 3 kksldwiyfgdemiipkklecssdlnh 29 (37) -.++|-.|-..|++||-+ |-.||++ T Consensus 54 Gq~ldl~y~NnEL~IPl~--~Q~DLDk 78 (100) T 2npt_B 54 GQSMDLHYTNNELVIPLT--TQDDLDK 78 (100) T ss_dssp TSCEEEEEEETTEEEECC--CHHHHHH T ss_pred CCCEEEEEECCEEEEECC--CHHHHHH T ss_conf 881546773673788635--6788999 No 3 >2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A Probab=7.43 E-value=1.4e+02 Score=13.78 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=18.1 Q ss_pred CCCCCEEEECCCEEECCCCCCCCCCCC Q ss_conf 322204896461320111002435660 Q 537021.9.peg.1 3 KKSLDWIYFGDEMIIPKKLECSSDLNH 29 (37) Q Consensus 3 kksldwiyfgdemiipkklecssdlnh 29 (37) ..++|--|-..|++||-+ |-.||+. T Consensus 38 Gq~ldl~y~NnEL~IPl~--~Q~DLDk 62 (94) T 2jrh_A 38 GQPLDLHYMNNELSILLK--NQDDLDK 62 (94) T ss_dssp CSSEEEEEECSSCEEECC--SHHHHHH T ss_pred CCCEEEEEECCEEEEECC--CHHHHHH T ss_conf 881547873775888636--7788999 No 4 >2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2 Probab=6.09 E-value=1.5e+02 Score=13.74 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=17.9 Q ss_pred CCCCCEEEECCCEEECCCCCCCCCCCC Q ss_conf 322204896461320111002435660 Q 537021.9.peg.1 3 KKSLDWIYFGDEMIIPKKLECSSDLNH 29 (37) Q Consensus 3 kksldwiyfgdemiipkklecssdlnh 29 (37) -.++|--|-..|++||-+ |-.||+. T Consensus 42 Gq~ldl~y~NnEL~IPL~--~Q~DLDk 66 (103) T 2cu1_A 42 GQSMDLHYTNNELVIPLT--TQDDLDK 66 (103) T ss_dssp SSCEEEEECSSSSCEECC--SHHHHHH T ss_pred CCCEEEEEECCEEEEECC--CHHHHHH T ss_conf 881535663673788636--6788999 No 5 >2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B Probab=6.07 E-value=1.9e+02 Score=13.15 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=18.3 Q ss_pred CCCCCEEEECCCEEECCCCCCCCCCCC Q ss_conf 322204896461320111002435660 Q 537021.9.peg.1 3 KKSLDWIYFGDEMIIPKKLECSSDLNH 29 (37) Q Consensus 3 kksldwiyfgdemiipkklecssdlnh 29 (37) -.++|--|-..|++||-+ |-.||+. T Consensus 65 Gq~ldl~y~NnEl~IPL~--~Q~DLDk 89 (111) T 2c60_A 65 GQPLDLHYMNNELSILLK--NQDDLDK 89 (111) T ss_dssp SSCCEEEEECSSCEEECC--SHHHHHH T ss_pred CCCEEEEEECCEEEEECC--CHHHHHH T ss_conf 881426773672788536--7888999 No 6 >2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 2oc0_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 3eyd_B* 3kee_E* ... Probab=5.90 E-value=1.4e+02 Score=13.89 Aligned_cols=10 Identities=60% Similarity=0.836 Sum_probs=7.3 Q ss_pred ECCCEEECCC Q ss_conf 6461320111 Q 537021.9.peg.1 11 FGDEMIIPKK 20 (37) Q Consensus 11 fgdemiipkk 20 (37) -|...||||| T Consensus 14 sgkpaiipkk 23 (26) T 2o8m_C 14 SGKPAIIPKK 23 (26) T ss_dssp SCCCEECCCC T ss_pred CCCCEECCCC T ss_conf 5985044355 No 7 >3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Probab=5.62 E-value=1.4e+02 Score=13.85 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=11.9 Q ss_pred CCCEEECCCCCCCCCCCCE Q ss_conf 4613201110024356602 Q 537021.9.peg.1 12 GDEMIIPKKLECSSDLNHV 30 (37) Q Consensus 12 gdemiipkklecssdlnhv 30 (37) .|.||.|+ .+||.|-.+| T Consensus 12 ~~~MiTP~-F~isQDd~~V 29 (115) T 3eud_A 12 DDKMITPR-FSITQDEEFI 29 (115) T ss_dssp --CCBCCC-EEEEECSSEE T ss_pred CCCEECCE-EEEEECCCEE T ss_conf 88778750-8988689989 No 8 >3cl5_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprotein, membrane, transmembrane, virio; HET: NAG SIO; 1.80A {Bovine coronavirus} PDB: 3cl4_A* Probab=5.61 E-value=1.8e+02 Score=13.34 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=8.0 Q ss_pred CCCEEEECCC Q ss_conf 2204896461 Q 537021.9.peg.1 5 SLDWIYFGDE 14 (37) Q Consensus 5 sldwiyfgde 14 (37) .-||--|||. T Consensus 13 t~DW~lFGDS 22 (377) T 3cl5_A 13 NGDWFLFGDA 22 (377) T ss_dssp SSCEEEEEEG T ss_pred CCCCEEECCC T ss_conf 3560230466 No 9 >2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ... Probab=5.33 E-value=2.2e+02 Score=12.91 Aligned_cols=22 Identities=18% Similarity=0.665 Sum_probs=20.0 Q ss_pred CCCEEEECCCEEECCCCCCCCC Q ss_conf 2204896461320111002435 Q 537021.9.peg.1 5 SLDWIYFGDEMIIPKKLECSSD 26 (37) Q Consensus 5 sldwiyfgdemiipkklecssd 26 (37) .|.+++.||..+-|+..-|+++ T Consensus 26 ~LNGlWL~d~VyCPRHVi~~~~ 47 (306) T 2h2z_A 26 TLNGLWLDDTVYCPRHVICTAE 47 (306) T ss_dssp EEEEEEETTEEEEEGGGGCCTT T ss_pred EEEEEEECCEEECCCEEEECCC T ss_conf 5741775899974652776166 No 10 >3d23_B 3C-like proteinase; main protease, ATP-binding, cytoplasm, endonuclease, exonuclease, helicase, hydrolase, membrane, metal-binding; HET: 3IH; 2.50A {Human coronavirus HKU1} Probab=5.06 E-value=2.3e+02 Score=12.81 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.4 Q ss_pred CCCEEEECCCEEECCCCCCCCCC Q ss_conf 22048964613201110024356 Q 537021.9.peg.1 5 SLDWIYFGDEMIIPKKLECSSDL 27 (37) Q Consensus 5 sldwiyfgdemiipkklecssdl 27 (37) .|.+++.||..+-|+..-||++- T Consensus 28 ~LNGlWL~d~VyCPRHVi~s~~~ 50 (302) T 3d23_B 28 TLNGLWLDDKVYCPRHVICSSSN 50 (302) T ss_dssp EEEEEEETTEEEEEGGGGCCSSS T ss_pred EEEEEEECCEEECCCEEEECCCC T ss_conf 57527758999736627863888 Done!