Query 537021.9.peg.1107_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:40:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1107.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1t77_A Lipopolysaccharide-res 18.4 24 0.00072 17.5 -0.4 20 10-29 80-99 (115) 2 >1twf_B DNA-directed RNA polym 8.4 53 0.0016 16.0 -1.1 18 10-27 36-53 (175) 3 >2rgn_B RHOA/RAC/CDC42 exchang 6.4 2.5E+02 0.0073 13.0 1.6 14 12-25 36-49 (164) 4 >1txd_A RHO guanine nucleotide 6.0 2.6E+02 0.0077 12.9 1.7 11 15-25 44-54 (156) 5 >1h2w_A Prolyl endopeptidase; 5.9 2.7E+02 0.0079 12.9 2.4 17 12-28 8-24 (47) 6 >2ox6_A Hypothetical protein S 5.5 2.8E+02 0.0084 12.7 2.5 24 3-26 70-93 (166) 7 >2bkl_A Prolyl endopeptidase; 5.2 3E+02 0.0088 12.6 2.4 17 12-28 9-25 (48) 8 >1kz7_A Guanine nucleotide exc 5.0 3.1E+02 0.0091 12.6 1.5 10 16-25 44-53 (158) 9 >1dbh_A Protein (human SOS 1); 4.7 3.3E+02 0.0096 12.5 1.6 13 13-25 44-56 (140) 10 >1b8k_A NT3, protein (neurotro 4.6 2.4E+02 0.0072 13.0 0.5 10 14-23 47-56 (119) No 1 >>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} (A:1-115) Probab=18.37 E-value=24 Score=17.54 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=15.3 Q ss_pred HHEEECCEEEEEEECCCCCC Q ss_conf 63010305999990677114 Q 537021.9.peg.1 10 FFFREKRQYFFVFNDTNQMN 29 (40) Q Consensus 10 fffrekrqyffvfndtnqmn 29 (40) .||...+.|||+|.+.+..+ T Consensus 80 IF~~dg~s~f~~F~~~~~r~ 99 (115) T 1t77_A 80 IFMANRVAVMFNFPDPATVK 99 (115) T ss_dssp EEETTSCEEEEECSSHHHHH T ss_pred EEECCCCEEEEECCCHHHHH T ss_conf 99718967999838888999 No 2 >>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1-42,B:542-549,B:630-754) Probab=8.41 E-value=53 Score=16.02 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=11.5 Q ss_pred HHEEECCEEEEEEECCCC Q ss_conf 630103059999906771 Q 537021.9.peg.1 10 FFFREKRQYFFVFNDTNQ 27 (40) Q Consensus 10 fffrekrqyffvfndtnq 27 (40) -||+||.|-|.+|.|... T Consensus 36 ~~f~~kg~~~~IfTDaGR 53 (175) T 1twf_B 36 AFFREKGMSCISVGTAGR 53 (175) T ss_dssp HHHHHHTTCEECCCCSCC T ss_pred HHHCCCCEEEECCCCCCC T ss_conf 986899913311345765 No 3 >>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, signaling complex, protein-protein complex, rhogef; HET: GDP; 3.50A {Homo sapiens} (B:191-354) Probab=6.44 E-value=2.5e+02 Score=13.01 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=10.1 Q ss_pred EEECCEEEEEEECC Q ss_conf 01030599999067 Q 537021.9.peg.1 12 FREKRQYFFVFNDT 25 (40) Q Consensus 12 frekrqyffvfndt 25 (40) .+.+.-|||.|||. T Consensus 36 ~~~~~r~~fLF~d~ 49 (164) T 2rgn_B 36 SRGRERRVFLFEQI 49 (164) T ss_dssp CCCCEEEEEEESSE T ss_pred CCCCHHHHHHHCCE T ss_conf 77612547661550 No 4 >>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} (A:230-385) Probab=6.04 E-value=2.6e+02 Score=12.90 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=8.1 Q ss_pred CCEEEEEEECC Q ss_conf 30599999067 Q 537021.9.peg.1 15 KRQYFFVFNDT 25 (40) Q Consensus 15 krqyffvfndt 25 (40) +.-|+|.|||. T Consensus 44 k~r~~fLF~d~ 54 (156) T 1txd_A 44 IDLYTLLLEDI 54 (156) T ss_dssp CCEEEEEESSE T ss_pred EEEEEEECCCE T ss_conf 57999950797 No 5 >>1h2w_A Prolyl endopeptidase; hydrolase, prolyl oligopeptidase, amnesia, alpha/ beta- hydrolase, beta-propeller, serine protease; 1.39A {Sus scrofa} (A:73-119) Probab=5.94 E-value=2.7e+02 Score=12.87 Aligned_cols=17 Identities=29% Similarity=0.770 Sum_probs=12.6 Q ss_pred EEECCEEEEEEECCCCC Q ss_conf 01030599999067711 Q 537021.9.peg.1 12 FREKRQYFFVFNDTNQM 28 (40) Q Consensus 12 frekrqyffvfndtnqm 28 (40) |+....|||..||--|- T Consensus 8 ~krG~~yf~~~N~GLQn 24 (47) T 1h2w_A 8 FKKGKRYFYFYNTGLQN 24 (47) T ss_dssp EEETTEEEEEEECSSCS T ss_pred EEECCEEEEEEECCCCC T ss_conf 78689999998048776 No 6 >>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} (A:) Probab=5.53 E-value=2.8e+02 Score=12.75 Aligned_cols=24 Identities=42% Similarity=0.445 Sum_probs=20.9 Q ss_pred HHHHHHHHHEEECCEEEEEEECCC Q ss_conf 667666463010305999990677 Q 537021.9.peg.1 3 YDEIEDLFFFREKRQYFFVFNDTN 26 (40) Q Consensus 3 ydeiedlfffrekrqyffvfndtn 26 (40) .|.||.||--..||+.-||.-.|. T Consensus 70 ~dgieelfkkepkr~l~fvvyptq 93 (166) T 2ox6_A 70 TDGIEALFKKEPKRHLAFVVYPTQ 93 (166) T ss_dssp HHHHHHHHTTSCCSEEEEEECSSH T ss_pred CCCHHHHHHHCCCCEEEEEECCHH T ss_conf 422999973184303678972318 No 7 >>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} (A:68-115) Probab=5.19 E-value=3e+02 Score=12.64 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=12.6 Q ss_pred EEECCEEEEEEECCCCC Q ss_conf 01030599999067711 Q 537021.9.peg.1 12 FREKRQYFFVFNDTNQM 28 (40) Q Consensus 12 frekrqyffvfndtnqm 28 (40) ++....|||..|+--|- T Consensus 9 ~~rG~ryF~~~n~GlQn 25 (48) T 2bkl_A 9 SRRNGRFFYVRTHKDKE 25 (48) T ss_dssp EEETTEEEEEEECTTCS T ss_pred EEECCEEEEEEEECCCC T ss_conf 79889589999818996 No 8 >>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} (A:196-353) Probab=5.05 E-value=3.1e+02 Score=12.59 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=7.4 Q ss_pred CEEEEEEECC Q ss_conf 0599999067 Q 537021.9.peg.1 16 RQYFFVFNDT 25 (40) Q Consensus 16 rqyffvfndt 25 (40) .-|+|.|||. T Consensus 44 ~r~~fLF~d~ 53 (158) T 1kz7_A 44 QRHLFLHEKA 53 (158) T ss_dssp EEEEEEESSE T ss_pred EEEEEEECCE T ss_conf 5899997886 No 9 >>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} (A:215-354) Probab=4.69 E-value=3.3e+02 Score=12.47 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=9.2 Q ss_pred EECCEEEEEEECC Q ss_conf 1030599999067 Q 537021.9.peg.1 13 REKRQYFFVFNDT 25 (40) Q Consensus 13 rekrqyffvfndt 25 (40) +.++.|||.|||. T Consensus 44 ~~k~r~~fLf~d~ 56 (140) T 1dbh_A 44 AKHERHIFLFDGL 56 (140) T ss_dssp CSSCEEEEEESSE T ss_pred CCCEEEEEECCCE T ss_conf 5653699961877 No 10 >>1b8k_A NT3, protein (neurotrophin-3); complex (growth factor/growth factor); 2.15A {Homo sapiens} (A:) Probab=4.57 E-value=2.4e+02 Score=13.05 Aligned_cols=10 Identities=30% Similarity=0.643 Sum_probs=7.0 Q ss_pred ECCEEEEEEE Q ss_conf 0305999990 Q 537021.9.peg.1 14 EKRQYFFVFN 23 (40) Q Consensus 14 ekrqyffvfn 23 (40) ..+||||.-. T Consensus 47 ~~kQyF~eTk 56 (119) T 1b8k_A 47 PVKQYFYETR 56 (119) T ss_dssp -CBCCEEEEE T ss_pred EEEEEEEEEE T ss_conf 7899999999 Done!