RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1107_1
         (40 letters)



>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
          beige-like anchor protein LRBA {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 22.6 bits (48), Expect = 8.8
 Identities = 4/20 (20%), Positives = 6/20 (30%)

Query: 10 FFFREKRQYFFVFNDTNQMN 29
           F   +    F F D   + 
Sbjct: 80 IFMANRVAVMFNFPDPATVK 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.339    0.148    0.472 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 163,408
Number of extensions: 4598
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 3
Length of query: 40
Length of database: 2,407,596
Length adjustment: 13
Effective length of query: 27
Effective length of database: 2,229,106
Effective search space: 60185862
Effective search space used: 60185862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 47 (22.2 bits)