RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.1120_1
         (40 letters)



>gnl|CDD|150762 pfam10124, Mu-like_gpT, Mu-like prophage major head subunit gpT. 
          Members of this family of proteins comprise various
          caudoviral prophage proteins, including the Mu-like
          prophage major head subunit gpT.
          Length = 291

 Score = 27.6 bits (62), Expect = 0.67
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 7/33 (21%)

Query: 6  GNFPREKEVVGSRTLRNIEK-------KPKESS 31
          G FP  +E +G R ++++         K  ES+
Sbjct: 43 GQFPGLREWIGDRVIQDLSAHGYSITNKTFEST 75


>gnl|CDD|130160 TIGR01088, aroQ, 3-dehydroquinate dehydratase, type II.  This
          model specifies the type II enzyme. The type I enzyme,
          often found as part of a multifunctional protein, is
          described by TIGR01093.
          Length = 141

 Score = 24.2 bits (53), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)

Query: 10 REKEVVGSRTLRNIEKKPK--------ESSTRKSSLEGQ 40
          RE  V GS+TL  I +  +        E    +S+ EGQ
Sbjct: 16 REPGVYGSQTLEEIVEIIETFAAQLNVELEFFQSNSEGQ 54


>gnl|CDD|180053 PRK05395, PRK05395, 3-dehydroquinate dehydratase; Provisional.
          Length = 146

 Score = 24.2 bits (54), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 10 REKEVVGSRTLRNIEK 25
          RE E+ GS TL +IE 
Sbjct: 18 REPEIYGSTTLADIEA 33


>gnl|CDD|178849 PRK00082, hrcA, heat-inducible transcription repressor;
          Provisional.
          Length = 339

 Score = 24.0 bits (53), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 1  LKSIIGNFPREKEVVGSRTL 20
          L++I+ ++    E VGS+TL
Sbjct: 12 LRAIVEDYIATGEPVGSKTL 31


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.304    0.125    0.320 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 553,435
Number of extensions: 16297
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 6
Length of query: 40
Length of database: 5,994,473
Length adjustment: 14
Effective length of query: 26
Effective length of database: 5,691,961
Effective search space: 147990986
Effective search space used: 147990986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.1 bits)