RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.1120_1 (40 letters) >gnl|CDD|150762 pfam10124, Mu-like_gpT, Mu-like prophage major head subunit gpT. Members of this family of proteins comprise various caudoviral prophage proteins, including the Mu-like prophage major head subunit gpT. Length = 291 Score = 27.6 bits (62), Expect = 0.67 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 7/33 (21%) Query: 6 GNFPREKEVVGSRTLRNIEK-------KPKESS 31 G FP +E +G R ++++ K ES+ Sbjct: 43 GQFPGLREWIGDRVIQDLSAHGYSITNKTFEST 75 >gnl|CDD|130160 TIGR01088, aroQ, 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093. Length = 141 Score = 24.2 bits (53), Expect = 7.4 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%) Query: 10 REKEVVGSRTLRNIEKKPK--------ESSTRKSSLEGQ 40 RE V GS+TL I + + E +S+ EGQ Sbjct: 16 REPGVYGSQTLEEIVEIIETFAAQLNVELEFFQSNSEGQ 54 >gnl|CDD|180053 PRK05395, PRK05395, 3-dehydroquinate dehydratase; Provisional. Length = 146 Score = 24.2 bits (54), Expect = 8.3 Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 10 REKEVVGSRTLRNIEK 25 RE E+ GS TL +IE Sbjct: 18 REPEIYGSTTLADIEA 33 >gnl|CDD|178849 PRK00082, hrcA, heat-inducible transcription repressor; Provisional. Length = 339 Score = 24.0 bits (53), Expect = 9.8 Identities = 8/20 (40%), Positives = 14/20 (70%) Query: 1 LKSIIGNFPREKEVVGSRTL 20 L++I+ ++ E VGS+TL Sbjct: 12 LRAIVEDYIATGEPVGSKTL 31 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.304 0.125 0.320 Gapped Lambda K H 0.267 0.0714 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 553,435 Number of extensions: 16297 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 6 Length of query: 40 Length of database: 5,994,473 Length adjustment: 14 Effective length of query: 26 Effective length of database: 5,691,961 Effective search space: 147990986 Effective search space used: 147990986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 50 (23.1 bits)