RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.1120_1 (40 letters) >d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]} Length = 158 Score = 22.5 bits (48), Expect = 9.4 Identities = 5/17 (29%), Positives = 8/17 (47%) Query: 10 REKEVVGSRTLRNIEKK 26 R+ + G TL I + Sbjct: 17 RDPRLYGMVTLDQIHEI 33 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.304 0.125 0.320 Gapped Lambda K H 0.267 0.0614 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 117,975 Number of extensions: 2438 Number of successful extensions: 10 Number of sequences better than 10.0: 1 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 4 Length of query: 40 Length of database: 2,407,596 Length adjustment: 13 Effective length of query: 27 Effective length of database: 2,229,106 Effective search space: 60185862 Effective search space used: 60185862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 47 (22.1 bits)