RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1128_1
         (41 letters)



>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive
          peptide activation, copper, ascorbate, oxidoreductase;
          1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2
          PDB: 1sdw_A* 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A
          Length = 309

 Score = 24.7 bits (53), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 24 FQFRGHTFIVHHLLL 38
          F+ R     VHH+LL
Sbjct: 51 FKPRASMDTVHHMLL 65


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.145    0.437 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 321,353
Number of extensions: 7218
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 41
Length of database: 5,693,230
Length adjustment: 14
Effective length of query: 27
Effective length of database: 5,353,814
Effective search space: 144552978
Effective search space used: 144552978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.5 bits)