Query         537021.9.peg.1140_1
Match_columns 90
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 07:43:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1140.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1un0_C Nucleoporin NUP2; nucl  48.0     5.1 0.00015   21.2   0.3   15    1-15      1-15  (51)
  2 >1gxg_A Colicin E8 immunity pr  32.7      35   0.001   15.9   2.7   30   10-39     10-45  (85)
  3 >1k9u_A Polcalcin PHL P 7; pol  30.6      18 0.00053   17.8   0.8   20    5-24     15-34  (43)
  4 >1qjt_A EH1, epidermal growth   25.3      51  0.0015   14.8   2.6   53    4-57     22-74  (99)
  5 >2be4_A Hypothetical protein L  20.7      48  0.0014   15.0   1.5   15    7-21     25-39  (100)
  6 >2jak_A Serine/threonine-prote  20.4      61  0.0018   14.4   2.0   14   45-58      3-16  (64)
  7 >2qyu_A Secreted effector prot  19.2      68   0.002   14.1   5.1   40   24-63      3-50  (98)
  8 >3hhw_A Phosphoprotein; protei  17.4      38  0.0011   15.7   0.4   39    2-40     40-82  (87)
  9 >2k47_A Phosphoprotein, P prot  17.3      54  0.0016   14.7   1.2   39    2-40     24-66  (79)
 10 >3bq3_A Defective in cullin ne  15.4      64  0.0019   14.2   1.2   15    9-23     60-74  (112)

No 1  
>>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C (C:)
Probab=48.01  E-value=5.1  Score=21.25  Aligned_cols=15  Identities=47%  Similarity=0.685  Sum_probs=14.2

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             983034330239999
Q 537021.9.peg.1    1 MTKRQEDHYITREEF   15 (90)
Q Consensus         1 mtkrqedhyitreef   15 (90)
                      |.||..|+-||||.|
T Consensus         1 MaKR~A~~QITre~~   15 (51)
T 1un0_C            1 MAKRVADAQIQRETY   15 (51)
T ss_pred             CCCCCCCCCHHHHHC
T ss_conf             974333320003221


No 2  
>>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} (A:)
Probab=32.74  E-value=35  Score=15.89  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=22.1

Q ss_pred             HHHHHHHHHH------HCCCCHHHHHHHHHHHHHHH
Q ss_conf             2399999997------36863367789999999999
Q 537021.9.peg.1   10 ITREEFIEFC------TNSNSKQDCLISQFKLFEKH   39 (90)
Q Consensus        10 itreefiefc------tnsnskqdclisqfklfekh   39 (90)
                      .|++|||+|-      +.+...+|-|+..|.-.--|
T Consensus        10 YTE~EFl~lv~~i~~~~~~e~~~d~li~hF~~iteH   45 (85)
T 1gxg_A           10 YTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEH   45 (85)
T ss_dssp             SCHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             229999999999980646525687789999999808


No 3  
>>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} (A:36-78)
Probab=30.58  E-value=18  Score=17.80  Aligned_cols=20  Identities=35%  Similarity=0.735  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             34330239999999736863
Q 537021.9.peg.1    5 QEDHYITREEFIEFCTNSNS   24 (90)
Q Consensus         5 qedhyitreefiefctnsns   24 (90)
                      ..|-||.-+||++||+.+.+
T Consensus        15 DgDG~I~l~EF~~~~~~~~~   34 (43)
T 1k9u_A           15 DGDGFIDFNEFISFCNANPG   34 (43)
T ss_dssp             TCSSSEEHHHHHHHHHHCHH
T ss_pred             CCCCEEEHHHHHHHHHHCCC
T ss_conf             99990829999999988987


No 4  
>>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} (A:)
Probab=25.30  E-value=51  Score=14.85  Aligned_cols=53  Identities=13%  Similarity=0.058  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             034330239999999736863367789999999999999862789999999999
Q 537021.9.peg.1    4 RQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSV   57 (90)
Q Consensus         4 rqedhyitreefiefctnsnskqdclisqfklfekhyreqqkgvneildilksv   57 (90)
                      +..+.+|+++||.....+.+..+..+-..|..+... +...-..+|.+..+..+
T Consensus        22 ~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~D~~-~dg~I~~~eF~~~~~~~   74 (99)
T 1qjt_A           22 AGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTD-GKGVLSKQEFFVALRLV   74 (99)
T ss_dssp             CTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCS-SSSSCCSHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHH
T ss_conf             899795979999999998187599999999972789-99918899999999999


No 5  
>>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, structural genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A (A:1-100)
Probab=20.71  E-value=48  Score=15.02  Aligned_cols=15  Identities=27%  Similarity=0.543  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             330239999999736
Q 537021.9.peg.1    7 DHYITREEFIEFCTN   21 (90)
Q Consensus         7 dhyitreefiefctn   21 (90)
                      +-+|+++||.+..++
T Consensus        25 ~G~I~~~El~~~l~~   39 (100)
T 2be4_A           25 NGYIEGKELDDFFRH   39 (100)
T ss_dssp             CSEEEGGGHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             994889999999999


No 6  
>>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation, PP2A regulatory subunit; 2.60A {Homo sapiens} (A:229-292)
Probab=20.39  E-value=61  Score=14.39  Aligned_cols=14  Identities=43%  Similarity=0.795  Sum_probs=11.4

Q ss_pred             HCHHHHHHHHHHHH
Q ss_conf             27899999999999
Q 537021.9.peg.1   45 KGVNEILDILKSVK   58 (90)
Q Consensus        45 kgvneildilksvk   58 (90)
                      .|+.|+|+|+.|.-
T Consensus         3 ngi~ELLei~gSII   16 (64)
T 2jak_A            3 NGIAELLEILGSII   16 (64)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             34899999999999


No 7  
>>2qyu_A Secreted effector protein; ubiquitin E3 ligase; HET: B3P; 2.10A {Salmonella typhimurium SL1344} PDB: 2qza_A (A:423-520)
Probab=19.23  E-value=68  Score=14.07  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHH------HHHHHHHHH
Q ss_conf             33677899999999999998--62789999999------999999999
Q 537021.9.peg.1   24 SKQDCLISQFKLFEKHYREQ--QKGVNEILDIL------KSVKWLFSA   63 (90)
Q Consensus        24 skqdclisqfklfekhyreq--qkgvneildil------ksvkwlfsa   63 (90)
                      |-+.|.--.|.+|--+|.++  |.-+++++||+      .+.|-+|-+
T Consensus         3 sl~elF~q~FPlF~~~f~~~~~Q~~f~~lld~iiS~~~~~~Lk~~F~~   50 (98)
T 2qyu_A            3 SPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELNQQFLA   50 (98)
T ss_dssp             CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCTTTCHHHHHHHHH
T ss_pred             CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             988987423638789999999873357899999712334359999999


No 8  
>>3hhw_A Phosphoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 3hhz_A (A:)
Probab=17.42  E-value=38  Score=15.72  Aligned_cols=39  Identities=23%  Similarity=0.439  Sum_probs=25.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH---HHHHHHH
Q ss_conf             8303433023999999973686-3367789999---9999999
Q 537021.9.peg.1    2 TKRQEDHYITREEFIEFCTNSN-SKQDCLISQF---KLFEKHY   40 (90)
Q Consensus         2 tkrqedhyitreefiefctnsn-skqdclisqf---klfekhy   40 (90)
                      |-.-+|-++.++||+-.|.++. +-.+..|--.   |||.+-|
T Consensus        40 tVtL~DlF~Se~Ef~svc~~g~~~~~~ail~Glk~kkLyNqar   82 (87)
T 3hhw_A           40 TISLDELFSSRGEFISVGGNGRXSHKEAILLGLRYKKLYNQAR   82 (87)
T ss_dssp             EEEHHHHCSSSHHHHHHTCCSSSCHHHHHHHHTTTSCCHHHHH
T ss_pred             EEEHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6669997546146520278850658889998268999999988


No 9  
>>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus} (A:)
Probab=17.31  E-value=54  Score=14.69  Aligned_cols=39  Identities=18%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHH-HHHHHHH---HHHHHHH
Q ss_conf             8303433023999999973686336-7789999---9999999
Q 537021.9.peg.1    2 TKRQEDHYITREEFIEFCTNSNSKQ-DCLISQF---KLFEKHY   40 (90)
Q Consensus         2 tkrqedhyitreefiefctnsnskq-dclisqf---klfekhy   40 (90)
                      +-.-+|-++.|+||+-.|..+.+.. +.+|--.   |||.+-|
T Consensus        24 tvtL~dlF~Se~Ef~svc~~g~~~~~~Ail~Glk~kkLyNqar   66 (79)
T 2k47_A           24 TISLDELFSSRGEFISVGGDGRMSHKEAILLGLRYKKLYNQAR   66 (79)
T ss_dssp             EEESGGGCCCHHHHHHHHCCSCCCSHHHHHHHHHHHTCHHHHH
T ss_pred             EEEHHHHHCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6779997557156520378850667787997147999999999


No 10 
>>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 ligases, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* (A:66-177)
Probab=15.35  E-value=64  Score=14.23  Aligned_cols=15  Identities=20%  Similarity=0.356  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             023999999973686
Q 537021.9.peg.1    9 YITREEFIEFCTNSN   23 (90)
Q Consensus         9 yitreefiefctnsn   23 (90)
                      |+||+||++-+.+-+
T Consensus        60 ~ftr~eF~~G~~~l~   74 (112)
T 3bq3_A           60 PLKREDFLSTWFXQG   74 (112)
T ss_dssp             CCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             652788999999908


Done!