Query 537021.9.peg.1140_1 Match_columns 90 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 07:43:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1140.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1un0_C Nucleoporin NUP2; nucl 48.0 5.1 0.00015 21.2 0.3 15 1-15 1-15 (51) 2 >1gxg_A Colicin E8 immunity pr 32.7 35 0.001 15.9 2.7 30 10-39 10-45 (85) 3 >1k9u_A Polcalcin PHL P 7; pol 30.6 18 0.00053 17.8 0.8 20 5-24 15-34 (43) 4 >1qjt_A EH1, epidermal growth 25.3 51 0.0015 14.8 2.6 53 4-57 22-74 (99) 5 >2be4_A Hypothetical protein L 20.7 48 0.0014 15.0 1.5 15 7-21 25-39 (100) 6 >2jak_A Serine/threonine-prote 20.4 61 0.0018 14.4 2.0 14 45-58 3-16 (64) 7 >2qyu_A Secreted effector prot 19.2 68 0.002 14.1 5.1 40 24-63 3-50 (98) 8 >3hhw_A Phosphoprotein; protei 17.4 38 0.0011 15.7 0.4 39 2-40 40-82 (87) 9 >2k47_A Phosphoprotein, P prot 17.3 54 0.0016 14.7 1.2 39 2-40 24-66 (79) 10 >3bq3_A Defective in cullin ne 15.4 64 0.0019 14.2 1.2 15 9-23 60-74 (112) No 1 >>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C (C:) Probab=48.01 E-value=5.1 Score=21.25 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=14.2 Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 983034330239999 Q 537021.9.peg.1 1 MTKRQEDHYITREEF 15 (90) Q Consensus 1 mtkrqedhyitreef 15 (90) |.||..|+-||||.| T Consensus 1 MaKR~A~~QITre~~ 15 (51) T 1un0_C 1 MAKRVADAQIQRETY 15 (51) T ss_pred CCCCCCCCCHHHHHC T ss_conf 974333320003221 No 2 >>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} (A:) Probab=32.74 E-value=35 Score=15.89 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=22.1 Q ss_pred HHHHHHHHHH------HCCCCHHHHHHHHHHHHHHH Q ss_conf 2399999997------36863367789999999999 Q 537021.9.peg.1 10 ITREEFIEFC------TNSNSKQDCLISQFKLFEKH 39 (90) Q Consensus 10 itreefiefc------tnsnskqdclisqfklfekh 39 (90) .|++|||+|- +.+...+|-|+..|.-.--| T Consensus 10 YTE~EFl~lv~~i~~~~~~e~~~d~li~hF~~iteH 45 (85) T 1gxg_A 10 YTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEH 45 (85) T ss_dssp SCHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC T ss_conf 229999999999980646525687789999999808 No 3 >>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} (A:36-78) Probab=30.58 E-value=18 Score=17.80 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHCCCC Q ss_conf 34330239999999736863 Q 537021.9.peg.1 5 QEDHYITREEFIEFCTNSNS 24 (90) Q Consensus 5 qedhyitreefiefctnsns 24 (90) ..|-||.-+||++||+.+.+ T Consensus 15 DgDG~I~l~EF~~~~~~~~~ 34 (43) T 1k9u_A 15 DGDGFIDFNEFISFCNANPG 34 (43) T ss_dssp TCSSSEEHHHHHHHHHHCHH T ss_pred CCCCEEEHHHHHHHHHHCCC T ss_conf 99990829999999988987 No 4 >>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} (A:) Probab=25.30 E-value=51 Score=14.85 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=35.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH Q ss_conf 034330239999999736863367789999999999999862789999999999 Q 537021.9.peg.1 4 RQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSV 57 (90) Q Consensus 4 rqedhyitreefiefctnsnskqdclisqfklfekhyreqqkgvneildilksv 57 (90) +..+.+|+++||.....+.+..+..+-..|..+... +...-..+|.+..+..+ T Consensus 22 ~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~D~~-~dg~I~~~eF~~~~~~~ 74 (99) T 1qjt_A 22 AGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTD-GKGVLSKQEFFVALRLV 74 (99) T ss_dssp CTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCS-SSSSCCSHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHH T ss_conf 899795979999999998187599999999972789-99918899999999999 No 5 >>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, structural genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A (A:1-100) Probab=20.71 E-value=48 Score=15.02 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 330239999999736 Q 537021.9.peg.1 7 DHYITREEFIEFCTN 21 (90) Q Consensus 7 dhyitreefiefctn 21 (90) +-+|+++||.+..++ T Consensus 25 ~G~I~~~El~~~l~~ 39 (100) T 2be4_A 25 NGYIEGKELDDFFRH 39 (100) T ss_dssp CSEEEGGGHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 994889999999999 No 6 >>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation, PP2A regulatory subunit; 2.60A {Homo sapiens} (A:229-292) Probab=20.39 E-value=61 Score=14.39 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=11.4 Q ss_pred HCHHHHHHHHHHHH Q ss_conf 27899999999999 Q 537021.9.peg.1 45 KGVNEILDILKSVK 58 (90) Q Consensus 45 kgvneildilksvk 58 (90) .|+.|+|+|+.|.- T Consensus 3 ngi~ELLei~gSII 16 (64) T 2jak_A 3 NGIAELLEILGSII 16 (64) T ss_dssp SCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 34899999999999 No 7 >>2qyu_A Secreted effector protein; ubiquitin E3 ligase; HET: B3P; 2.10A {Salmonella typhimurium SL1344} PDB: 2qza_A (A:423-520) Probab=19.23 E-value=68 Score=14.07 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=31.0 Q ss_pred CHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHH------HHHHHHHHH Q ss_conf 33677899999999999998--62789999999------999999999 Q 537021.9.peg.1 24 SKQDCLISQFKLFEKHYREQ--QKGVNEILDIL------KSVKWLFSA 63 (90) Q Consensus 24 skqdclisqfklfekhyreq--qkgvneildil------ksvkwlfsa 63 (90) |-+.|.--.|.+|--+|.++ |.-+++++||+ .+.|-+|-+ T Consensus 3 sl~elF~q~FPlF~~~f~~~~~Q~~f~~lld~iiS~~~~~~Lk~~F~~ 50 (98) T 2qyu_A 3 SPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELNQQFLA 50 (98) T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCTTTCHHHHHHHHH T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 988987423638789999999873357899999712334359999999 No 8 >>3hhw_A Phosphoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 3hhz_A (A:) Probab=17.42 E-value=38 Score=15.72 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=25.7 Q ss_pred CCCHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH---HHHHHHH Q ss_conf 8303433023999999973686-3367789999---9999999 Q 537021.9.peg.1 2 TKRQEDHYITREEFIEFCTNSN-SKQDCLISQF---KLFEKHY 40 (90) Q Consensus 2 tkrqedhyitreefiefctnsn-skqdclisqf---klfekhy 40 (90) |-.-+|-++.++||+-.|.++. +-.+..|--. |||.+-| T Consensus 40 tVtL~DlF~Se~Ef~svc~~g~~~~~~ail~Glk~kkLyNqar 82 (87) T 3hhw_A 40 TISLDELFSSRGEFISVGGNGRXSHKEAILLGLRYKKLYNQAR 82 (87) T ss_dssp EEEHHHHCSSSHHHHHHTCCSSSCHHHHHHHHTTTSCCHHHHH T ss_pred EEEHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 6669997546146520278850658889998268999999988 No 9 >>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus} (A:) Probab=17.31 E-value=54 Score=14.69 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=25.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHH-HHHHHHH---HHHHHHH Q ss_conf 8303433023999999973686336-7789999---9999999 Q 537021.9.peg.1 2 TKRQEDHYITREEFIEFCTNSNSKQ-DCLISQF---KLFEKHY 40 (90) Q Consensus 2 tkrqedhyitreefiefctnsnskq-dclisqf---klfekhy 40 (90) +-.-+|-++.|+||+-.|..+.+.. +.+|--. |||.+-| T Consensus 24 tvtL~dlF~Se~Ef~svc~~g~~~~~~Ail~Glk~kkLyNqar 66 (79) T 2k47_A 24 TISLDELFSSRGEFISVGGDGRMSHKEAILLGLRYKKLYNQAR 66 (79) T ss_dssp EEESGGGCCCHHHHHHHHCCSCCCSHHHHHHHHHHHTCHHHHH T ss_pred EEEHHHHHCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6779997557156520378850667787997147999999999 No 10 >>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 ligases, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* (A:66-177) Probab=15.35 E-value=64 Score=14.23 Aligned_cols=15 Identities=20% Similarity=0.356 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 023999999973686 Q 537021.9.peg.1 9 YITREEFIEFCTNSN 23 (90) Q Consensus 9 yitreefiefctnsn 23 (90) |+||+||++-+.+-+ T Consensus 60 ~ftr~eF~~G~~~l~ 74 (112) T 3bq3_A 60 PLKREDFLSTWFXQG 74 (112) T ss_dssp CCCHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCC T ss_conf 652788999999908 Done!