BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.1140_1
         (90 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|317120665|gb|ADV02488.1| hypothetical protein SC1_gp010 [Liberibacter phage SC1]
 gi|317120809|gb|ADV02630.1| hypothetical protein SC1_gp010 [Candidatus Liberibacter
          asiaticus]
          Length = 90

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/90 (98%), Positives = 90/90 (100%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
          MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60

Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
          FSALKNIAIAVTSLTAIIYG+LNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGILNIKGWFKQ 90


>gi|317120706|gb|ADV02528.1| hypothetical protein SC2_gp010 [Liberibacter phage SC2]
 gi|317120767|gb|ADV02588.1| hypothetical protein SC2_gp010 [Candidatus Liberibacter
          asiaticus]
          Length = 90

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/90 (97%), Positives = 89/90 (98%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
          MTKRQED YITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1  MTKRQEDRYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60

Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
          FSALKNIAIAVTSLTAIIYG+LNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGILNIKGWFKQ 90


>gi|317120749|gb|ADV02571.1| hypothetical protein SC2_gp255 [Liberibacter phage SC2]
 gi|317120763|gb|ADV02584.1| hypothetical protein SC2_gp255 [Candidatus Liberibacter
          asiaticus]
          Length = 90

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/90 (94%), Positives = 87/90 (96%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
          M KRQED+YITREEFIEFCTNSNSKQDCLIS  KLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1  MAKRQEDYYITREEFIEFCTNSNSKQDCLISHCKLFEKHYREQQKGVNEILDILKSVKWL 60

Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
          FSALKNIAIAVTSLTAIIYG+LNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGILNIKGWFKQ 90


>gi|315121925|ref|YP_004062414.1| hypothetical protein CKC_00875 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495327|gb|ADR51926.1| hypothetical protein CKC_00875 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 85

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 70/90 (77%), Gaps = 5/90 (5%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
          MTKRQE  Y+T++EF E     ++K DC+I+  K+ E+  R+QQ+G+ EIL+IL+ +KW 
Sbjct: 1  MTKRQE-QYVTKQEFNEL----SAKVDCIITHLKVCERSERKQQQGIEEILNILQGLKWF 55

Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
          F+++KNIAI VTSL+AI+YG+ NIKGW KQ
Sbjct: 56 FASIKNIAIIVTSLSAILYGVFNIKGWLKQ 85


>gi|315122887|ref|YP_004063376.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496289|gb|ADR52888.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 85

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 5/90 (5%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
          MTKRQE  Y+T++EF E     N+K DCLI+  K+FE+HY EQQ  +  IL IL + K L
Sbjct: 1  MTKRQE-QYVTKQEFNEL----NAKVDCLITHCKVFERHYNEQQNDIKSILQILNTSKGL 55

Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
           S +K       SL+AIIY L N+K W KQ
Sbjct: 56 ASFIKTSGAITASLSAIIYALYNLKAWLKQ 85


>gi|315122304|ref|YP_004062793.1| hypothetical protein CKC_02780 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495706|gb|ADR52305.1| hypothetical protein CKC_02780 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 92

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 55/97 (56%), Gaps = 12/97 (12%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFE-----KHYRE--QQKGVNEILDI 53
          M KRQ D  +TR+EF       +SK D +  QFK  E     K  R+  QQK + EIL+I
Sbjct: 1  MAKRQ-DQTVTRQEFKAL----DSKVDHIDKQFKALEARDKKKQARDEKQQKYIEEILNI 55

Query: 54 LKSVKWLFSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
          L + K L S +K I     SL+AIIY + N+KGW KQ
Sbjct: 56 LNTSKGLASFIKMIGAITASLSAIIYAIYNLKGWLKQ 92


>gi|315122320|ref|YP_004062809.1| hypothetical protein CKC_02860 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495722|gb|ADR52321.1| hypothetical protein CKC_02860 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 55

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 40 YREQQKGVNEILDILKSVKWLFSALKNIAIAVTSLTAIIYGLLNIKGWFK 89
          YR QQKG+ EI ++L + K L S +K       SL+AIIY L N+K W K
Sbjct: 6  YR-QQKGIEEIFNLLNTSKGLASFIKTSGAITASLSAIIYALYNLKNWIK 54


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 32  QFKLFEKHYREQQKGVNEILDILKSVKWLFSALK 65
           + K+FEK YRE Q+ +N +  IL S K LF  +K
Sbjct: 448 EIKVFEKEYRELQRRINALTKILNSEKELFKVIK 481


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 32  QFKLFEKHYREQQKGVNEILDILKSVKWLFSALK 65
           + K+FEK Y+E Q+ +N +  IL S K LF  +K
Sbjct: 448 EIKVFEKEYKELQRRINALTKILNSEKELFKVIK 481


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.323    0.136    0.400 

Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 926,378,637
Number of Sequences: 13984884
Number of extensions: 34443437
Number of successful extensions: 95019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95010
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 4,792,584,752
effective HSP length: 60
effective length of query: 30
effective length of database: 3,953,491,712
effective search space: 118604751360
effective search space used: 118604751360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.8 bits)