RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.1140_1
         (90 letters)



>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS
          release, karyopherin recycling; 2.6A {Saccharomyces
          cerevisiae} PDB: 2c1t_C (C:)
          Length = 51

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 1  MTKRQEDHYITREEF 15
          M KR  D  I RE +
Sbjct: 1  MAKRVADAQIQRETY 15


>3drw_A ADP-specific phosphofructokinase; AMP, cytoplasm,
           glycolysis, magnesium, metal-binding, transferase,
           structural genomics, PSI-2; HET: AMP; 1.90A {Pyrococcus
           horikoshii} PDB: 1u2x_A (A:1-34,A:120-174,A:222-474)
          Length = 342

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 7/57 (12%)

Query: 7   DHYITREEFIEFCTNSNSKQDCLI-------SQFKLFEKHYREQQKGVNEILDILKS 56
           + Y TRE+   F      + D  I              K      +   E +   K 
Sbjct: 86  EAYRTREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLRRAKEDIIEFKE 142


>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
          cytoplasm, detoxification, magnesium, metal-binding,
          peroxisome, polymorphism; HET: 34N; 1.95A {Homo
          sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A*
          3i1y_A* 1zd3_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A*
          (A:17-100)
          Length = 84

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 33 FKLFEKHYREQQKGVNEILDILKSVKWLF----SALK 65
            L E++ R+  +     L    S+K +F    SA K
Sbjct: 48 IPLMEENCRKCSETAKVCLPKNFSIKEIFDKAISARK 84


>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168,
          calicium binding, EF-hand superfamily, structural
          genomics, protein structure initiative, PSI; 2.10A
          {Danio rerio} PDB: 2q4u_A (A:1-100)
          Length = 100

 Score = 23.5 bits (50), Expect = 9.6
 Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 3/32 (9%)

Query: 7  DHYITREEFIEFCTNSNSKQDCLISQFKLFEK 38
          D  +  EE          +++  +  F+    
Sbjct: 71 DGRLQIEELANXIL---PQEENFLLIFRREAP 99


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 642,888
Number of extensions: 22250
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 18
Length of query: 90
Length of database: 4,956,049
Length adjustment: 52
Effective length of query: 38
Effective length of database: 3,198,189
Effective search space: 121531182
Effective search space used: 121531182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)