HHsearch alignment for GI: peg_1142 and conserved domain: PHA02006
>PHA02006 virion protein.
Probab=94.62 E-value=0.22 Score=27.39 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHH--CCCCCCCCCCC----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3347678654220--13211368761----7-899999999863119999999998563032212369999999999999
Q 537021.9.peg.1 2 QEHARGSVGSTIQ--DKRWITGKDGS----V-NNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSSQVYRAKALVIGILG 74 (218)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~tg~~Gt----~-ge~~R~~~QFK~fPis~~~m~~~~r~~~~~g~~s~~~~aaaL~at~tl 74 (218)
T Consensus 1149 q~dVd~vmN~alRiMDDsiLYGR~GQgssFaRSqvGQILGQFRSFV-sFAhNKLLRGT~~nsG~~G----lAsLlAfQYP 1223 (1337)
T PHA02006 1149 QADVNTVMNTALRIMDDSLLYGRVGQNSGFARSPVGQILGQFRSFV-AFAHNKLLRGTYENSGVLG----VASLLAFQYP 1223 (1337)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCHHCCCHHH----HHHHHHHHCC
T ss_conf 7888899999888731003012457887520306889999999999-9874077742010367024----9999975322
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHH
Q ss_conf 989999999985489877786523589---99985--223343020000234200025246768999987778---6554
Q 537021.9.peg.1 75 EELIRKTLVPLISGKEPQLDFSDPTEY---IKALI--NGITHYERFSPFNSSGWDVLGPWSSQAGKLAIAGKE---AVWD 146 (218)
Q Consensus 75 ~Gal~~qlk~LL~GkdP~~d~tdp~fw---~~a~l--~Ggg~fgD~t~ygSsg~~vlGP~~s~~~~L~~~~~~---~~~~ 146 (218)
T Consensus 1224 lT~lMv~anearkG~~d---~Se~Gi~kmA~~aIGYTAglGF~gD~~GiV~G~~~mSAPV~GLA~~~~~i~~G~~~L~~G 1300 (1337)
T PHA02006 1224 LTALMMGAKAAINGKFD---TSDEGIRKMAIDGIGYTAGLGFTADMWGVVTGHSRMSAPVFGLAEHSNEVFRGVKDLVTG 1300 (1337)
T ss_pred HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHCCCCCHHHCCCHHCCC
T ss_conf 89999988998658763---206779999886403000024203222001477876764300211896054153401068
Q ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 113101483145779999862186144899999
Q 537021.9.peg.1 147 EGTRKQRGKAQAQFGKELVNTFVPFQNLWYARG 179 (218)
Q Consensus 147 e~~~~~~~~~~~~~~~k~v~~~~P~~NLWYtK~ 179 (218)
T Consensus 1301 ~~ps~A~~D-~~----~~A~~ALPFV~V~P~T~ 1328 (1337)
T PHA02006 1301 DDPAAATGD-IV----SGAAGALPFVNVFPATK 1328 (1337)
T ss_pred CCHHHHHHH-HH----HHHCCCCCCCCCCCCHH
T ss_conf 884778889-99----85402486234463089